BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032306
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BEZ|C Chain C, Structure Of A Proteolitically Resistant Core From The
           Severe Acute Respiratory Syndrome Coronavirus S2 Fusion
           Protein
          Length = 77

 Score = 28.9 bits (63), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 67  GQMDSVISQAQATLGALVFQ-RSTFGGINSKLSNVSSRLPSV 107
           G++  V++Q    L  LV Q  S FG I+S L+++ SRL  V
Sbjct: 33  GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV 74


>pdb|1WYY|A Chain A, Post-Fusion Hairpin Conformation Of The Sars Coronavirus
           Spike Glycoprotein
 pdb|1WYY|B Chain B, Post-Fusion Hairpin Conformation Of The Sars Coronavirus
           Spike Glycoprotein
          Length = 149

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 67  GQMDSVISQAQATLGALVFQ-RSTFGGINSKLSNVSSRLPSV 107
           G++  V++Q    L  LV Q  S FG I+S L+++ SRL  V
Sbjct: 46  GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV 87


>pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From
           Sulfolobus Tokodaii
 pdb|4E1B|A Chain A, Re-Refinement Of Pdb Entry 2eqa - Sua5 Protein From
           Sulfolobus Tokodaii With Bound
           Threonylcarbamoyladenylate
          Length = 352

 Score = 26.9 bits (58), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 8   QSLGTEFYRLRSSLKAKQEHA-----SLLEDFREFDRTRLDLEDGVGSPEQAL 55
           + L  EF  L+  +    E+      +L + FRE D+  +DL   +G PE+ +
Sbjct: 271 KELSKEFEGLQQIILGSDENLYEVARNLFDSFRELDKLNVDLGIXIGFPERGI 323


>pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With
           L-Threonine And Amppnp
          Length = 352

 Score = 26.6 bits (57), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 8   QSLGTEFYRLRSSLKAKQEHA-----SLLEDFREFDRTRLDLEDGVGSPEQALLKEHASI 62
           + L  EF  L+  +    E+      +L + FRE D+  +DL   +G PE+ +    A +
Sbjct: 271 KELSKEFEGLQQIILGSDENLYEVARNLFDSFRELDKLNVDLGIMIGFPERGI--GFAIM 328

Query: 63  NRS 65
           NR+
Sbjct: 329 NRA 331


>pdb|1RZ2|A Chain A, 1.6a Crystal Structure Of The Protein Ba4783Q81L49
           (SIMILAR TO Sortase B) From Bacillus Anthracis
          Length = 254

 Score = 26.2 bits (56), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 4   VFNVQSLGTEFYRLRSSLKAKQEHASLLEDFRE 36
           VF+V +  T+FY + +   +  E+ S LE  +E
Sbjct: 179 VFSVYTTTTDFYYIETDFSSDTEYTSFLEKIQE 211


>pdb|4GBM|A Chain A, Sulfotransferase Domain From The Curacin Biosynthetic
           Pathway
          Length = 323

 Score = 25.8 bits (55), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 31/53 (58%)

Query: 74  SQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
           S A  T   +   +S+  G +++ ++VSSRLP +  ILSS +   ++  ++LA
Sbjct: 1   SNASPTSLEIFATKSSPSGNSARPASVSSRLPGIIFILSSPRSGSTLLRVMLA 53


>pdb|2OQW|A Chain A, The Crystal Structure Of Sortase B From B.Anthracis In
           Complex With Aaek1
 pdb|2OQZ|A Chain A, The Crystal Structure Of Sortase B From B.Anthracis In
           Complex With Aaek2
          Length = 223

 Score = 25.8 bits (55), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 4   VFNVQSLGTEFYRLRSSLKAKQEHASLLEDFRE 36
           VF+V +  T+FY + +   +  E+ S LE  +E
Sbjct: 148 VFSVYTTTTDFYYIETDFSSDTEYTSFLEKIQE 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.131    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,279,887
Number of Sequences: 62578
Number of extensions: 105225
Number of successful extensions: 261
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 8
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)