BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032306
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LMP7|GOS11_ARATH Golgi SNAP receptor complex member 1-1 OS=Arabidopsis thaliana
GN=GOS11 PE=2 SV=1
Length = 223
Score = 236 bits (601), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/137 (83%), Positives = 125/137 (91%), Gaps = 1/137 (0%)
Query: 7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRST 66
+Q L EFYR RSSL+AKQEHASLLEDFREFDRTRLDLEDG GS EQAL+KEH INR+T
Sbjct: 88 LQDLTQEFYRHRSSLRAKQEHASLLEDFREFDRTRLDLEDGYGS-EQALIKEHMGINRNT 146
Query: 67 GQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126
QMD VISQAQATLG LVFQRSTFGGINSKLSNV+SRLP+VN IL++IKRKKSMDTIIL+
Sbjct: 147 AQMDGVISQAQATLGTLVFQRSTFGGINSKLSNVASRLPTVNTILAAIKRKKSMDTIILS 206
Query: 127 LVASVCTFLIFIYWVTK 143
LVA+VCTFLIFIYW+TK
Sbjct: 207 LVAAVCTFLIFIYWITK 223
>sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana
GN=GOS12 PE=1 SV=2
Length = 257
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 10/135 (7%)
Query: 13 EFYRLRSSLKAKQEHASLL----EDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQ 68
EF R++ ++ + +EHA LL +D E+ + G SP +L+E ASI+ S
Sbjct: 129 EFRRIKGNINSLREHAELLSSVRDDISEYKAS------GSMSPGVQVLRERASIHGSISH 182
Query: 69 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALV 128
+D VI QAQAT L QRS F + K+ N+ + P + +L SIKRK+S DT+IL+ V
Sbjct: 183 IDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILSAV 242
Query: 129 ASVCTFLIFIYWVTK 143
+ CT + IYW++K
Sbjct: 243 IAACTLFLIIYWLSK 257
>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1
SV=2
Length = 250
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
+Q EF++ +++ A +E +L+ R+ D+E GV + L LKEH
Sbjct: 115 LQDYTHEFHKTKANFTAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168
Query: 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
+ S ++ IS A AT + QR I+SK++ +++R P+VN ++ I +K
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 228
Query: 121 DTIILALVASVCTFLIFIY 139
D++IL V +CT L+ +Y
Sbjct: 229 DSLILGGVIGICTILLLLY 247
>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1
SV=1
Length = 250
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
+Q EF++ +++ A +E +L+ R+ D+E GV + L LKEH
Sbjct: 115 LQDYTHEFHKTKANFMAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168
Query: 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
+ S ++ IS A AT + QR I+SK++ +++R P+VN ++ I +K
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 228
Query: 121 DTIILALVASVCTFLIFIY 139
D++IL V +CT L+ +Y
Sbjct: 229 DSLILGGVIGICTILLLLY 247
>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1
PE=1 SV=1
Length = 250
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
+Q EF++ +++ A +E +L+ R+ D+E GV + L LKEH
Sbjct: 115 LQDYTHEFHKTKANFMAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168
Query: 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
+ S ++ IS A AT + QR I+SK++ +++R P+VN ++ I +K
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 228
Query: 121 DTIILALVASVCTFLIFIY 139
D++IL V +CT L+ +Y
Sbjct: 229 DSLILGGVIGICTILLLLY 247
>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1
PE=1 SV=1
Length = 250
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
+Q EF++ +++ A +E +L+ R+ D+E GV + L LKEH
Sbjct: 115 LQDYTHEFHKTKANFMAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168
Query: 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
+ S ++ IS A AT + QR I+SK++ +++R P+VN ++ I +K
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 228
Query: 121 DTIILALVASVCTFLIFIY 139
D++IL V +CT L+ +Y
Sbjct: 229 DSLILGGVIGICTILLLLY 247
>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2
SV=1
Length = 250
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 12/139 (8%)
Query: 7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
+Q EF++ +++ A +E +L+ R+ D+E GV + L LKEH
Sbjct: 115 LQDYTHEFHKTKANFVAIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 168
Query: 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
+ S ++ IS A AT + QR I SK++ +++R P+VN ++ I +K
Sbjct: 169 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIQSKMNTLANRFPAVNSLIQRINLRKRR 228
Query: 121 DTIILALVASVCTFLIFIY 139
D++IL V VCT L+ +Y
Sbjct: 229 DSLILGGVIGVCTILLLLY 247
>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2
SV=1
Length = 248
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 7 VQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLED-----GVGSPEQAL-LKEHA 60
+Q EF++ +++ + +E +L+ R+ D+E GV + L LKEH
Sbjct: 113 LQDYTHEFHKTKANFMSIRERENLMGSVRK------DIESYKSGSGVNNRRTELFLKEHD 166
Query: 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
+ S ++ IS A AT + QR I+SK++ +++R P+VN ++ I +K
Sbjct: 167 HLRNSDRLIEETISIAMATKENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRR 226
Query: 121 DTIILALVASVCTFLIFIY 139
D++IL V +CT L+ +Y
Sbjct: 227 DSLILGGVIGICTILLLLY 245
>sp|P38736|GOSR1_YEAST Golgi SNAP receptor complex member 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GOS1 PE=1 SV=1
Length = 223
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 14 FYRLRSSLKAKQEHASLLEDFR-EFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSV 72
F +RSS++ ++ +LL + + + D +G ++ + E I++S +D +
Sbjct: 96 FRNIRSSIQQERNRLNLLFSVKNDIANSTTDAPAPIGDADEYIQNETRRIDQSNNVVDRL 155
Query: 73 ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVC 132
ISQA T Q + N+K+ R+P VNQ++ I ++ + +LA + ++C
Sbjct: 156 ISQAWETRSQFHSQSNVLNTANNKVLQTLQRIPGVNQLIMKINTRRKKNAFVLATITTLC 215
Query: 133 TFLIFIYW 140
+F W
Sbjct: 216 ILFLFFTW 223
>sp|Q95ZW1|GOSR1_CAEEL Golgi SNAP receptor complex member 1 OS=Caenorhabditis elegans
GN=gos-28 PE=2 SV=1
Length = 234
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 56 LKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 115
LKE+ IN +D + A +T + Q GI+++L ++S + P++N ++ IK
Sbjct: 148 LKENDHINACDRLLDEQLEMAMSTKENMARQGINLRGISTRLHHISKKYPAINNLMQKIK 207
Query: 116 RKKSMDTIILALVASVCTFLIF-IYWV 141
KK +T+ILA V S C LIF I+W+
Sbjct: 208 TKKQKNTLILAAVISSC--LIFTIFWI 232
>sp|A8XLW0|GOSR1_CAEBR Golgi SNAP receptor complex member 1 OS=Caenorhabditis briggsae
GN=gos-28 PE=3 SV=1
Length = 234
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 56 LKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 115
LKE+ IN +D I A +T + Q GI+++L ++ + P++N ++ IK
Sbjct: 148 LKENDHINACDRLLDEQIEMAMSTKENVARQGINLRGISNRLHYITKKYPAINNLMQKIK 207
Query: 116 RKKSMDTIILALVASVCTFLIF-IYWV 141
KK +T+ILA V S C LIF I+W+
Sbjct: 208 TKKQKNTMILAGVISAC--LIFTIFWI 232
>sp|Q09835|GOS1_SCHPO Protein transport protein gos1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=gos1 PE=3 SV=1
Length = 182
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 12/109 (11%)
Query: 41 RLDLEDGVGSPEQAL-------LKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGI 93
+ D + V SPE+ ++E S++ S + ++ +A AT +Q S G +
Sbjct: 76 KYDAKQEVLSPEELRDAQNFLEMQEANSLDNSIRGTNELLERAYATREDFDYQNSVLGNV 135
Query: 94 NSKLSNVSSRLPSVNQIL--SSIKRKKSMDTIILALVASVCTFLIFIYW 140
++++ + +P +NQIL +SI+R++ D+IILAL+ SV L+F+++
Sbjct: 136 TNRINGAAMSIPFINQILRKTSIRRRR--DSIILALLISVL-MLLFLFF 181
>sp|Q9P7G5|BOS1_SCHPO Protein transport protein bos1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bos1 PE=3 SV=1
Length = 235
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 50 SPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ 109
S + LLKEH + R+ Q+D + + + LG LV Q S +K+ N ++ L
Sbjct: 141 SRQDGLLKEHDFLGRAESQVDEFLERGRMILGDLVEQGSVLKATKTKVLNAANTLGITRH 200
Query: 110 ILSSIKRKKSMDTIILALVASVCTFLIFIYW 140
LS I R+ D II A FL+F+ +
Sbjct: 201 TLSLINRRSKQDKIIFYCGA----FLVFVLF 227
>sp|P41941|GOSR2_CAEEL Probable Golgi SNAP receptor complex member 2 OS=Caenorhabditis
elegans GN=gosr-2.1 PE=3 SV=1
Length = 213
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 32/76 (42%)
Query: 65 STGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTII 124
S +D +ISQ A L L Q G+ K+ + L N L I R+ D I+
Sbjct: 133 SHTHLDDLISQGSAVLENLKSQHLNLRGVGRKMHEIGQALGLSNSTLQVIDRRVREDWIL 192
Query: 125 LALVASVCTFLIFIYW 140
+ VC ++ ++
Sbjct: 193 FVIGCIVCCIFMYAFY 208
>sp|Q6BZQ6|BOS1_YARLI Protein transport protein BOS1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BOS1 PE=3 SV=1
Length = 226
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 52 EQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 111
E+ + +E +S+N+ Q+DS I Q A LG L Q K+ +V+ L + +
Sbjct: 134 EEGMQREQSSLNQVGQQLDSFIEQGMAALGDLQEQSDILRSTGKKMRSVAETLGLSRETI 193
Query: 112 SSIKRKKSMDTIILALVASVCTFLIFIYWVTK 143
++++ D + L+ Y++ K
Sbjct: 194 KMVEKRARQDKRF--FYGGIVFMLVCFYYILK 223
>sp|E9PVB3|CC175_MOUSE Coiled-coil domain-containing protein 175 OS=Mus musculus
GN=Ccdc175 PE=4 SV=1
Length = 822
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 9/143 (6%)
Query: 2 AYVFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHAS 61
A+V +Q LG + Y+L + + +E S L +++ T L E+ V +Q L +EH
Sbjct: 338 AFVNKIQKLGEKIYKLNTENEDLREKLSTL--LKQYKAT-LKEEEAVSLKKQMLSEEHQK 394
Query: 62 INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQI-LSSIKRKKSM 120
Q ++ +SQ + + F + FG +N N +SR QI + + R++ +
Sbjct: 395 QMMVITQKEAFLSQREHDIK---FMENGFGVLND--LNRASREAYGRQIEVMAKNRQREI 449
Query: 121 DTIILALVASVCTFLIFIYWVTK 143
++ CT +W+ K
Sbjct: 450 QRCVINQWRIFCTRKRHAHWLQK 472
>sp|Q57675|VATI_METJA V-type ATP synthase subunit I OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=atpI PE=3 SV=1
Length = 695
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 20 SLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQA 78
+LK K E+ +L + R+F+ R D+ D G+P +AL K + + + +S+I + +A
Sbjct: 217 TLKEKLEN--VLSEIRKFEFERYDISDVEGTPSEALSKIESELKAIESERNSLIEKLKA 273
>sp|P25385|BOS1_YEAST Protein transport protein BOS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BOS1 PE=1 SV=1
Length = 244
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 46 DGVGSP-EQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRL 104
+G G P Q L KE + R Q+D ++ Q + +V Q + ++SN L
Sbjct: 145 NGGGLPLYQGLQKEQSVFERGNAQLDYILEMGQQSFENIVEQNKILSKVQDRMSNGLRTL 204
Query: 105 PSVNQILSSIKRKKSMDTIIL 125
Q ++SI ++ D ++
Sbjct: 205 GVSEQTITSINKRVFKDKLVF 225
>sp|Q00547|HMMR_MOUSE Hyaluronan mediated motility receptor OS=Mus musculus GN=Hmmr PE=1
SV=4
Length = 794
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 54 ALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 113
ALL+E + ++ M+S + + +A L A V ++++ N+ L + L N++L +
Sbjct: 94 ALLQERGTQDKRIQDMESELEKTEAKLNAAVREKTSLSASNASLEKRLTELTRANELLKA 153
>sp|Q0ZME7|SPIKE_CVHN5 Spike glycoprotein OS=Human coronavirus HKU1 (isolate N5) GN=S PE=3
SV=1
Length = 1351
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 37 FDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSK 96
F++ L +++G + AL K + +N + ++S++ Q +F + FG I+S
Sbjct: 1008 FNKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQ--------LFNK--FGAISSS 1057
Query: 97 LSNVSSRL 104
L + SRL
Sbjct: 1058 LQEILSRL 1065
>sp|Q14EB0|SPIKE_CVHN2 Spike glycoprotein OS=Human coronavirus HKU1 (isolate N2) GN=S PE=3
SV=1
Length = 1351
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 37 FDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSK 96
F++ L +++G + AL K + +N + ++S++ Q +F + FG I+S
Sbjct: 1008 FNKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQ--------LFNK--FGAISSS 1057
Query: 97 LSNVSSRL 104
L + SRL
Sbjct: 1058 LQEILSRL 1065
>sp|Q5MQD0|SPIKE_CVHN1 Spike glycoprotein OS=Human coronavirus HKU1 (isolate N1) GN=S PE=3
SV=1
Length = 1356
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 37 FDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSK 96
F+ L +++G + AL K + +N + ++S++ Q +F + FG I+S
Sbjct: 1012 FNNALLSIQNGFSATNSALAKIQSVVNSNAQALNSLLQQ--------LFNK--FGAISSS 1061
Query: 97 LSNVSSRLPSV 107
L + SRL ++
Sbjct: 1062 LQEILSRLDAL 1072
>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=4
Length = 5068
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 18 RSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQ 68
R S K +++ A L E+ +E D LE G+ ++ALLKE R+ Q
Sbjct: 3703 RESAKLRKKQAELDEEEKEIDAKLRYLEMGINRRKEALLKEREKRERAYLQ 3753
>sp|A9WSY0|RPOB_RENSM DNA-directed RNA polymerase subunit beta OS=Renibacterium
salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484
/ NBRC 15589 / NCIMB 2235) GN=rpoB PE=3 SV=1
Length = 1175
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Query: 27 HASLLEDFREFDRTRLDLE-DGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVF 85
+ +LE+F EFD R LE DG + E ALL + + G+ +V AQ L L F
Sbjct: 241 ESQILEEFGEFDSIRATLEKDGTSTREDALLDIYRKLR--PGEPPTV-EAAQTLLDNLYF 297
Query: 86 QRSTFG-------------GINSKLSNVSSRLPSVNQILSSIK 115
+ GI+ L++ + + +N I++ IK
Sbjct: 298 NPKRYDLAKVGRYKINRKLGIDKSLASPDASVLDINDIVAIIK 340
>sp|Q0SSE8|RNY_CLOPS Ribonuclease Y OS=Clostridium perfringens (strain SM101 / Type A)
GN=rny PE=3 SV=1
Length = 511
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 6/108 (5%)
Query: 13 EFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSV 72
E ++LRS L +E + + F+R + E+ + + L K SIN+ + ++ +
Sbjct: 63 EVHKLRSDLD--KEIRDRRNEIQRFERRLIQREESLDKKGEMLEKREDSINKKSIEIQEL 120
Query: 73 ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSM 120
+ Q+ G QR+ I S LS+ +R ++++ IK + +M
Sbjct: 121 EERVQSLYGE---QRAELERI-SNLSSEDARTLLLDEVRREIKHESAM 164
>sp|Q9F6X6|BCHN_CHLAA Light-independent protochlorophyllide reductase subunit N
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=bchN PE=3 SV=1
Length = 444
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 77 QATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCT 133
Q TLG ++F R F + S++SS P ++ + IKR+ I L S CT
Sbjct: 66 QNTLGVMIFARPRFAVSLLEESDLSSSQPDISAQIEEIKREHHPSVIFL---LSSCT 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,386,326
Number of Sequences: 539616
Number of extensions: 1375761
Number of successful extensions: 4476
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4446
Number of HSP's gapped (non-prelim): 50
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)