Query 032306
Match_columns 143
No_of_seqs 123 out of 517
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:21:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3208 SNARE protein GS28 [In 100.0 8.7E-36 1.9E-40 226.6 15.9 139 2-142 93-231 (231)
2 KOG3251 Golgi SNAP receptor co 99.9 1.4E-23 3.1E-28 159.8 16.2 113 23-141 98-211 (213)
3 KOG1666 V-SNARE [Intracellular 99.9 1.2E-21 2.5E-26 149.0 14.1 135 3-143 70-218 (220)
4 PF12352 V-SNARE_C: Snare regi 99.7 4.9E-17 1.1E-21 103.6 7.9 66 53-118 1-66 (66)
5 PF03908 Sec20: Sec20; InterP 99.3 1E-10 2.2E-15 79.2 10.6 83 59-141 7-89 (92)
6 KOG0812 SNARE protein SED5/Syn 97.3 0.005 1.1E-07 49.5 10.9 81 61-141 228-308 (311)
7 PF00957 Synaptobrevin: Synapt 97.0 0.018 3.9E-07 38.2 10.2 64 60-123 3-66 (89)
8 KOG0860 Synaptobrevin/VAMP-lik 96.4 0.071 1.5E-06 37.5 9.9 84 59-142 28-115 (116)
9 KOG3385 V-SNARE [Intracellular 96.4 0.033 7.1E-07 39.2 7.8 86 53-141 28-116 (118)
10 KOG3202 SNARE protein TLG1/Syn 95.2 0.38 8.2E-06 37.9 10.4 70 53-122 144-214 (235)
11 PF09753 Use1: Membrane fusion 95.1 0.24 5.1E-06 39.0 9.2 87 53-143 155-249 (251)
12 PF04210 MtrG: Tetrahydrometha 94.6 0.16 3.4E-06 32.6 5.6 53 90-142 14-67 (70)
13 PF00957 Synaptobrevin: Synapt 94.5 0.83 1.8E-05 30.1 9.5 65 69-140 23-87 (89)
14 COG4064 MtrG Tetrahydromethano 93.5 0.31 6.7E-06 31.3 5.2 44 93-136 20-64 (75)
15 TIGR01149 mtrG N5-methyltetrah 92.9 0.55 1.2E-05 30.1 5.8 51 90-140 14-65 (70)
16 PRK01026 tetrahydromethanopter 92.8 0.53 1.1E-05 30.8 5.8 50 90-139 17-67 (77)
17 KOG3065 SNAP-25 (synaptosome-a 92.6 0.45 9.9E-06 38.3 6.3 56 60-115 79-134 (273)
18 smart00397 t_SNARE Helical reg 91.9 1.5 3.3E-05 26.3 7.0 55 55-109 7-61 (66)
19 PF05739 SNARE: SNARE domain; 91.4 2.1 4.5E-05 26.0 7.7 59 60-118 4-62 (63)
20 KOG1666 V-SNARE [Intracellular 90.8 6.5 0.00014 30.6 13.0 17 3-19 77-93 (220)
21 KOG2678 Predicted membrane pro 89.3 6.8 0.00015 30.8 9.8 70 72-141 167-236 (244)
22 COG5074 t-SNARE complex subuni 88.7 4.9 0.00011 31.9 8.6 79 61-140 186-268 (280)
23 PRK10884 SH3 domain-containing 87.0 12 0.00026 28.8 10.6 51 78-131 132-182 (206)
24 PF09889 DUF2116: Uncharacteri 86.3 2.9 6.3E-05 26.0 5.1 30 109-138 26-55 (59)
25 COG5325 t-SNARE complex subuni 85.1 15 0.00032 29.8 9.7 80 61-140 196-276 (283)
26 KOG3894 SNARE protein Syntaxin 84.4 13 0.00027 30.6 9.3 74 54-127 215-300 (316)
27 PF08693 SKG6: Transmembrane a 83.4 0.51 1.1E-05 27.1 0.7 16 127-142 22-37 (40)
28 KOG0810 SNARE protein Syntaxin 82.9 24 0.00052 28.8 12.3 59 61-122 210-269 (297)
29 KOG0809 SNARE protein TLG2/Syn 81.7 18 0.0004 29.5 9.1 59 81-139 239-298 (305)
30 PF01102 Glycophorin_A: Glycop 79.8 2.4 5.2E-05 30.1 3.2 9 122-130 67-75 (122)
31 PF12911 OppC_N: N-terminal TM 77.5 4 8.8E-05 24.2 3.3 29 110-138 4-32 (56)
32 PF03904 DUF334: Domain of unk 76.4 25 0.00054 27.7 8.1 55 73-140 112-166 (230)
33 PF12669 P12: Virus attachment 76.4 1.8 4E-05 26.6 1.6 18 123-140 2-19 (58)
34 cd00193 t_SNARE Soluble NSF (N 75.5 14 0.0003 21.6 6.0 49 60-108 6-54 (60)
35 PF08113 CoxIIa: Cytochrome c 74.7 4.4 9.5E-05 22.2 2.6 13 129-141 12-24 (34)
36 PRK09759 small toxic polypepti 74.3 3.3 7.1E-05 24.9 2.2 22 121-142 3-24 (50)
37 COG4068 Uncharacterized protei 72.5 7.2 0.00016 24.3 3.5 26 109-135 31-56 (64)
38 PF05568 ASFV_J13L: African sw 72.1 4.9 0.00011 29.6 3.1 20 123-142 34-53 (189)
39 PF08172 CASP_C: CASP C termin 72.0 5.2 0.00011 31.8 3.5 27 116-142 215-241 (248)
40 PF05084 GRA6: Granule antigen 69.1 7.5 0.00016 29.2 3.6 28 115-142 145-172 (215)
41 PRK09738 small toxic polypepti 67.7 4.4 9.6E-05 24.5 1.8 22 121-142 5-26 (52)
42 PF13800 Sigma_reg_N: Sigma fa 67.7 9.7 0.00021 25.3 3.7 9 111-119 5-13 (96)
43 PF01034 Syndecan: Syndecan do 64.4 2.2 4.8E-05 26.9 0.0 6 136-141 31-36 (64)
44 PF07798 DUF1640: Protein of u 64.3 56 0.0012 24.2 13.2 59 78-141 117-175 (177)
45 PF06024 DUF912: Nucleopolyhed 63.2 4.4 9.4E-05 27.6 1.3 16 122-137 63-78 (101)
46 PHA02955 hypothetical protein; 62.3 8.1 0.00018 30.0 2.8 21 122-142 181-201 (213)
47 PF10779 XhlA: Haemolysin XhlA 61.3 38 0.00083 21.3 7.9 29 112-140 41-69 (71)
48 PRK09546 zntB zinc transporter 60.9 87 0.0019 25.3 15.0 22 122-143 299-320 (324)
49 PRK14750 kdpF potassium-transp 60.2 22 0.00047 18.8 3.3 18 124-141 6-23 (29)
50 KOG0862 Synaptobrevin/VAMP-lik 59.7 83 0.0018 24.6 9.2 56 66-125 140-195 (216)
51 COG4640 Predicted membrane pro 59.7 7 0.00015 33.3 2.1 22 122-143 51-73 (465)
52 PF09753 Use1: Membrane fusion 59.2 84 0.0018 24.5 8.6 47 56-102 173-223 (251)
53 PF04272 Phospholamban: Phosph 58.4 28 0.0006 20.5 3.9 25 116-140 25-49 (52)
54 PF04678 DUF607: Protein of un 58.3 75 0.0016 23.7 7.4 35 96-130 65-100 (180)
55 TIGR01294 P_lamban phospholamb 57.0 29 0.00062 20.4 3.8 25 116-140 25-49 (52)
56 PF09889 DUF2116: Uncharacteri 56.8 35 0.00077 21.1 4.5 29 113-141 27-55 (59)
57 PHA03164 hypothetical protein; 56.5 18 0.00038 23.8 3.2 19 109-127 46-64 (88)
58 PF13800 Sigma_reg_N: Sigma fa 56.4 25 0.00055 23.3 4.1 21 113-133 3-23 (96)
59 PF05545 FixQ: Cbb3-type cytoc 56.3 22 0.00047 20.7 3.4 12 131-142 20-31 (49)
60 PHA02902 putative IMV membrane 55.5 19 0.0004 22.8 3.0 20 121-140 4-25 (70)
61 PF01519 DUF16: Protein of unk 55.1 67 0.0015 22.1 6.1 57 60-117 37-96 (102)
62 PF06024 DUF912: Nucleopolyhed 54.5 13 0.00028 25.3 2.5 17 124-140 68-84 (101)
63 PF12575 DUF3753: Protein of u 54.0 22 0.00047 23.0 3.3 14 123-136 51-64 (72)
64 KOG0811 SNARE protein PEP12/VA 53.6 1.2E+02 0.0025 24.5 9.9 64 61-124 181-245 (269)
65 PF00523 Fusion_gly: Fusion gl 52.8 4.7 0.0001 35.1 0.1 19 5-23 48-66 (490)
66 PRK12800 fliF flagellar MS-rin 52.7 45 0.00098 29.7 6.2 15 118-132 28-42 (574)
67 PTZ00234 variable surface prot 52.6 12 0.00025 32.2 2.4 23 119-141 363-385 (433)
68 PF11395 DUF2873: Protein of u 52.4 25 0.00054 19.8 2.9 10 133-142 22-31 (43)
69 PF11190 DUF2976: Protein of u 52.1 17 0.00037 24.3 2.7 24 120-143 60-83 (87)
70 TIGR02115 potass_kdpF K+-trans 51.9 22 0.00048 18.4 2.5 17 125-141 2-18 (26)
71 PF08776 VASP_tetra: VASP tetr 51.5 29 0.00063 19.8 3.2 27 3-30 9-35 (40)
72 PF13997 YqjK: YqjK-like prote 51.2 63 0.0014 20.6 5.8 49 80-132 2-50 (73)
73 PF01848 HOK_GEF: Hok/gef fami 49.9 12 0.00026 21.7 1.5 18 124-141 3-20 (43)
74 PF06692 MNSV_P7B: Melon necro 48.8 22 0.00048 21.8 2.6 22 121-142 12-33 (61)
75 PF01544 CorA: CorA-like Mg2+ 48.6 1E+02 0.0022 23.7 7.1 13 131-143 280-292 (292)
76 COG5052 YOP1 Protein involved 48.2 57 0.0012 24.8 5.2 46 90-138 5-53 (186)
77 TIGR03752 conj_TIGR03752 integ 47.5 60 0.0013 28.3 5.9 48 53-100 83-131 (472)
78 PF03148 Tektin: Tektin family 47.3 1.7E+02 0.0037 24.5 8.6 43 50-92 317-359 (384)
79 KOG3065 SNAP-25 (synaptosome-a 46.7 68 0.0015 25.9 5.8 53 61-113 219-271 (273)
80 PRK06287 cobalt transport prot 46.6 22 0.00048 24.5 2.7 20 122-141 78-97 (107)
81 PF06696 Strep_SA_rep: Strepto 46.2 42 0.00091 17.2 3.7 21 2-22 2-22 (25)
82 PF01102 Glycophorin_A: Glycop 45.3 26 0.00057 24.8 2.9 12 123-134 72-83 (122)
83 PF11146 DUF2905: Protein of u 44.8 36 0.00078 21.4 3.2 22 122-143 3-24 (64)
84 COG4420 Predicted membrane pro 44.5 46 0.001 25.5 4.3 47 64-110 14-60 (191)
85 PF05478 Prominin: Prominin; 44.2 2.6E+02 0.0057 25.8 9.9 10 121-130 412-421 (806)
86 PRK14759 potassium-transportin 44.0 50 0.0011 17.5 3.2 19 123-141 5-23 (29)
87 PF12877 DUF3827: Domain of un 43.9 6.8 0.00015 35.2 -0.3 17 75-91 225-241 (684)
88 PF02932 Neur_chan_memb: Neuro 43.9 31 0.00067 24.3 3.2 20 121-140 218-237 (237)
89 PF05644 Miff: Mitochondrial a 43.0 1.2E+02 0.0027 24.0 6.7 45 87-142 201-245 (246)
90 PF10779 XhlA: Haemolysin XhlA 42.2 86 0.0019 19.6 8.5 34 90-136 36-69 (71)
91 PF09604 Potass_KdpF: F subuni 41.6 51 0.0011 16.8 3.0 18 124-141 2-19 (25)
92 PRK09731 putative general secr 41.6 36 0.00078 25.7 3.3 31 110-140 25-55 (178)
93 PHA02844 putative transmembran 41.3 43 0.00093 21.7 3.2 16 122-137 50-65 (75)
94 PRK10299 PhoPQ regulatory prot 40.6 36 0.00077 20.1 2.5 16 123-138 7-22 (47)
95 PF04415 DUF515: Protein of un 40.4 15 0.00033 31.4 1.2 20 113-132 22-41 (416)
96 PF02532 PsbI: Photosystem II 40.3 67 0.0015 17.8 3.4 17 122-138 5-21 (36)
97 PF13190 PDGLE: PDGLE domain 40.1 38 0.00082 22.3 2.9 21 122-142 66-86 (88)
98 COG4736 CcoQ Cbb3-type cytochr 40.1 45 0.00097 20.7 3.0 12 131-142 20-31 (60)
99 COG1476 Predicted transcriptio 39.8 38 0.00082 21.6 2.7 32 99-130 19-50 (68)
100 PRK14748 kdpF potassium-transp 39.7 60 0.0013 17.1 3.2 18 124-141 6-23 (29)
101 PF07889 DUF1664: Protein of u 39.4 1.4E+02 0.003 21.3 6.5 52 60-111 68-119 (126)
102 TIGR01195 oadG_fam sodium pump 38.0 47 0.001 21.7 3.1 16 124-139 12-27 (82)
103 PF12495 Vip3A_N: Vegetative i 37.5 1.6E+02 0.0034 21.3 6.3 69 57-129 49-128 (177)
104 PRK10856 cytoskeletal protein 37.4 31 0.00068 28.4 2.7 12 114-125 103-114 (331)
105 PF06422 PDR_CDR: CDR ABC tran 37.2 40 0.00087 22.8 2.8 7 121-127 51-57 (103)
106 PF04226 Transgly_assoc: Trans 36.7 60 0.0013 18.9 3.1 18 125-142 30-47 (48)
107 COG3630 OadG Na+-transporting 36.5 53 0.0012 21.8 3.1 17 124-140 15-31 (84)
108 PF02439 Adeno_E3_CR2: Adenovi 36.3 74 0.0016 17.9 3.2 6 123-128 8-13 (38)
109 PF04277 OAD_gamma: Oxaloaceta 36.2 49 0.0011 20.9 2.9 6 125-130 10-15 (79)
110 PF13179 DUF4006: Family of un 36.1 55 0.0012 20.8 3.0 17 124-140 17-33 (66)
111 PF05399 EVI2A: Ectropic viral 34.7 38 0.00082 26.5 2.5 6 131-136 143-148 (227)
112 PHA03054 IMV membrane protein; 34.7 65 0.0014 20.7 3.2 13 123-135 51-63 (72)
113 PHA02819 hypothetical protein; 34.2 66 0.0014 20.6 3.2 14 123-136 49-62 (71)
114 KOG3637 Vitronectin receptor, 34.0 31 0.00068 32.8 2.4 21 123-143 980-1001(1030)
115 COG3149 PulM Type II secretory 33.8 54 0.0012 24.8 3.1 15 117-131 31-45 (181)
116 PF11044 TMEMspv1-c74-12: Plec 33.3 73 0.0016 18.7 3.0 12 122-133 6-17 (49)
117 PF03908 Sec20: Sec20; InterP 33.1 1.4E+02 0.0031 19.5 10.9 50 78-138 40-89 (92)
118 PHA02975 hypothetical protein; 32.6 74 0.0016 20.3 3.2 14 123-136 47-60 (69)
119 KOG0862 Synaptobrevin/VAMP-lik 32.3 1.7E+02 0.0036 22.9 5.7 61 69-140 154-214 (216)
120 PF10183 ESSS: ESSS subunit of 31.9 69 0.0015 21.8 3.3 17 123-139 61-77 (105)
121 COG0497 RecN ATPase involved i 31.8 3.8E+02 0.0082 24.0 10.8 67 9-81 168-235 (557)
122 PHA02692 hypothetical protein; 31.6 72 0.0016 20.4 3.0 10 127-136 53-62 (70)
123 PF11174 DUF2970: Protein of u 30.9 82 0.0018 19.2 3.1 17 122-138 32-48 (56)
124 PF10661 EssA: WXG100 protein 30.3 55 0.0012 23.8 2.7 12 89-100 83-94 (145)
125 PF12352 V-SNARE_C: Snare regi 29.9 1.3E+02 0.0028 18.1 6.5 18 55-72 31-48 (66)
126 COG3197 FixS Uncharacterized p 29.6 92 0.002 19.2 3.1 15 127-141 11-25 (58)
127 PF09813 Coiled-coil_56: Coile 29.3 94 0.002 21.3 3.5 22 119-140 48-69 (100)
128 PF02167 Cytochrom_C1: Cytochr 29.3 66 0.0014 25.1 3.1 19 123-141 193-211 (219)
129 PF10158 LOH1CR12: Tumour supp 29.3 2.1E+02 0.0046 20.4 7.7 61 54-114 46-106 (131)
130 PRK07193 fliF flagellar MS-rin 29.2 68 0.0015 28.4 3.5 23 119-141 24-47 (552)
131 PF07851 TMPIT: TMPIT-like pro 29.0 3.4E+02 0.0074 22.6 9.6 94 4-110 3-97 (330)
132 PF13974 YebO: YebO-like prote 29.0 1.7E+02 0.0036 19.3 4.5 32 62-93 18-49 (80)
133 PF06459 RR_TM4-6: Ryanodine R 28.4 1.4E+02 0.003 24.1 4.9 27 114-140 165-191 (274)
134 cd00922 Cyt_c_Oxidase_IV Cytoc 27.8 84 0.0018 22.5 3.3 20 121-140 74-94 (136)
135 PF06898 YqfD: Putative stage 27.8 71 0.0015 26.8 3.3 15 117-131 83-97 (385)
136 PRK05529 cell division protein 27.7 69 0.0015 25.2 3.1 32 111-142 24-58 (255)
137 PHA02947 S-S bond formation pa 27.7 1.1E+02 0.0025 23.8 4.1 17 120-136 178-194 (215)
138 PF08374 Protocadherin: Protoc 27.4 33 0.00071 26.8 1.1 12 125-136 44-55 (221)
139 PF06939 DUF1286: Protein of u 27.2 1E+02 0.0022 21.6 3.4 26 107-132 39-80 (114)
140 TIGR00847 ccoS cytochrome oxid 27.1 1.1E+02 0.0024 18.3 3.2 10 131-140 15-24 (51)
141 PF03597 CcoS: Cytochrome oxid 27.0 1.2E+02 0.0025 17.7 3.2 7 134-140 17-23 (45)
142 PHA02503 putative transcriptio 27.0 58 0.0013 19.5 1.9 13 3-15 22-34 (57)
143 PF02936 COX4: Cytochrome c ox 26.9 93 0.002 22.5 3.4 19 120-138 73-91 (142)
144 PF09716 ETRAMP: Malarial earl 26.9 1.7E+02 0.0036 19.1 4.3 24 107-130 39-62 (84)
145 KOG4782 Predicted membrane pro 26.8 80 0.0017 21.5 2.7 19 122-140 59-77 (108)
146 PRK11519 tyrosine kinase; Prov 26.7 1.2E+02 0.0026 27.6 4.7 24 119-142 28-51 (719)
147 PF14937 DUF4500: Domain of un 26.5 88 0.0019 20.9 2.9 15 118-132 33-47 (86)
148 COG4459 NapE Periplasmic nitra 26.5 1.2E+02 0.0026 18.7 3.3 20 118-137 16-35 (62)
149 PF05933 Fun_ATP-synt_8: Funga 26.5 65 0.0014 19.1 2.0 13 131-143 17-29 (48)
150 PF15183 MRAP: Melanocortin-2 26.4 94 0.002 20.7 3.0 12 124-135 41-52 (90)
151 PRK15471 chain length determin 26.4 1.3E+02 0.0029 24.7 4.6 21 121-141 30-50 (325)
152 PRK06654 fliL flagellar basal 26.0 68 0.0015 24.3 2.6 22 122-143 35-56 (181)
153 PF08173 YbgT_YccB: Membrane b 25.9 1.1E+02 0.0024 16.0 3.2 19 122-140 5-23 (28)
154 PRK03814 oxaloacetate decarbox 25.8 87 0.0019 20.7 2.8 7 133-139 24-30 (85)
155 cd00930 Cyt_c_Oxidase_VIII Cyt 25.8 1.2E+02 0.0025 17.6 3.0 22 121-142 14-35 (43)
156 PHA02662 ORF131 putative membr 25.7 72 0.0016 25.0 2.7 17 121-137 186-202 (226)
157 TIGR02106 cyd_oper_ybgT cyd op 25.5 1.2E+02 0.0026 16.2 3.3 15 122-136 5-19 (30)
158 COG5415 Predicted integral mem 25.4 2.2E+02 0.0047 22.4 5.3 21 68-88 19-39 (251)
159 PF12459 DUF3687: D-Ala-teicho 25.3 1.4E+02 0.0031 17.1 3.3 12 131-142 18-29 (42)
160 PRK11901 hypothetical protein; 25.3 82 0.0018 26.1 3.1 19 120-138 35-53 (327)
161 COG3850 NarQ Signal transducti 25.2 1.5E+02 0.0033 26.5 4.8 36 97-132 121-156 (574)
162 COG3462 Predicted membrane pro 24.8 99 0.0022 21.7 3.0 16 124-139 55-70 (117)
163 PF15431 TMEM190: Transmembran 24.5 1.5E+02 0.0033 20.8 3.9 16 128-143 70-85 (134)
164 PF03789 ELK: ELK domain ; In 24.4 66 0.0014 15.9 1.5 13 2-14 9-21 (22)
165 PF01299 Lamp: Lysosome-associ 24.2 71 0.0015 25.7 2.6 10 123-132 275-284 (306)
166 PF10267 Tmemb_cc2: Predicted 24.2 4.5E+02 0.0098 22.4 12.8 23 10-32 242-264 (395)
167 PF06387 Calcyon: D1 dopamine 24.1 67 0.0014 24.4 2.2 27 113-139 77-104 (186)
168 TIGR02876 spore_yqfD sporulati 24.0 91 0.002 26.2 3.3 14 117-130 80-93 (382)
169 PF00325 Crp: Bacterial regula 24.0 32 0.00069 18.6 0.4 26 98-123 6-31 (32)
170 COG4192 Signal transduction hi 24.0 4.5E+02 0.0099 23.5 7.4 61 55-115 251-325 (673)
171 PF11057 Cortexin: Cortexin of 24.0 59 0.0013 21.2 1.7 19 121-139 27-45 (81)
172 PRK09841 cryptic autophosphory 23.9 1.4E+02 0.0031 27.1 4.7 23 119-141 28-50 (726)
173 PHA02689 ORF051 putative membr 23.8 77 0.0017 22.7 2.3 8 134-141 41-48 (128)
174 TIGR02876 spore_yqfD sporulati 23.6 73 0.0016 26.7 2.6 18 125-142 85-102 (382)
175 PF08135 EPV_E5: Major transfo 23.6 91 0.002 18.0 2.2 8 133-140 25-32 (44)
176 PHA02849 putative transmembran 23.1 1E+02 0.0023 20.2 2.7 8 132-139 29-36 (82)
177 PF05335 DUF745: Protein of un 22.8 3.5E+02 0.0075 20.6 7.4 59 54-112 110-168 (188)
178 COG3766 Predicted membrane pro 22.7 2.2E+02 0.0049 20.5 4.5 39 103-141 56-94 (133)
179 PHA03240 envelope glycoprotein 22.7 96 0.0021 24.4 2.9 8 123-130 215-222 (258)
180 KOG3443 Uncharacterized conser 22.6 2.9E+02 0.0062 20.9 5.3 49 78-126 32-80 (184)
181 PHA02590 hypothetical protein; 22.5 1.5E+02 0.0033 20.2 3.5 37 90-126 3-39 (105)
182 PRK06231 F0F1 ATP synthase sub 22.3 1.1E+02 0.0024 23.4 3.2 17 125-141 52-68 (205)
183 PF05753 TRAP_beta: Translocon 22.3 87 0.0019 23.5 2.6 24 119-142 148-172 (181)
184 PF13571 DUF4133: Domain of un 22.0 1.2E+02 0.0027 20.6 3.0 18 123-140 20-38 (96)
185 PF15508 NAAA-beta: beta subun 21.4 1.4E+02 0.0031 19.7 3.2 22 2-23 17-38 (95)
186 PHA02655 hypothetical protein; 21.4 51 0.0011 21.4 1.0 14 127-140 74-87 (94)
187 TIGR01478 STEVOR variant surfa 21.3 94 0.002 25.4 2.7 15 69-83 185-199 (295)
188 PF02495 7kD_coat: 7kD viral c 21.1 97 0.0021 18.7 2.2 18 124-141 2-19 (59)
189 PF10256 Erf4: Golgin subfamil 21.0 2.8E+02 0.006 18.8 5.1 8 110-117 38-45 (118)
190 PF02553 CbiN: Cobalt transpor 20.9 1E+02 0.0022 19.9 2.3 15 120-134 2-16 (74)
191 PHA02967 hypothetical protein; 20.7 89 0.0019 22.3 2.2 9 133-141 37-45 (128)
192 PHA03240 envelope glycoprotein 20.7 1.1E+02 0.0023 24.2 2.8 22 122-143 211-232 (258)
193 PF00737 PsbH: Photosystem II 20.6 1.6E+02 0.0035 17.7 2.9 12 124-135 27-38 (52)
194 PF03176 MMPL: MMPL family; I 20.5 3.2E+02 0.0069 21.7 5.7 43 99-141 122-164 (333)
195 PF02173 pKID: pKID domain; I 20.3 92 0.002 17.8 1.8 13 3-15 22-34 (41)
196 PF15176 LRR19-TM: Leucine-ric 20.1 1.4E+02 0.0031 20.5 3.0 15 124-138 20-34 (102)
197 PF03302 VSP: Giardia variant- 20.1 71 0.0015 27.0 1.9 9 133-141 383-391 (397)
No 1
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-36 Score=226.63 Aligned_cols=139 Identities=44% Similarity=0.616 Sum_probs=126.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHH
Q 032306 2 AYVFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLG 81 (143)
Q Consensus 2 ryr~~L~~~~~ef~r~~~~~~~~~~R~~Ll~~~~~~~~~~~~~~~~~~~~~~~ll~e~~~L~~S~~~~d~~~~~g~~~~~ 81 (143)
|+||+|++|.+||+++++++.+.++|+.|++++..+. ...+..++ ..+.+++++|+++|++|.+.+|+++++|++|++
T Consensus 93 RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~-~~~~~~~~-~~~~e~~lkE~~~in~s~~~vde~Is~A~aTre 170 (231)
T KOG3208|consen 93 RHREILQDYTQEFRRIRSNIDAKRERESLLESVRADI-SSYPSASG-FNRGEMYLKEHDHINNSIRLVDELISQAQATRE 170 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCccCC-CchHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999887532 22233333 234478999999999999999999999999999
Q ss_pred HHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHc
Q 032306 82 ALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 82 ~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
+|..||..|+++++|+.++++.+|.+|++|.+|++|++||.+|+++||++|++|++||||.
T Consensus 171 ~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~~ 231 (231)
T KOG3208|consen 171 NLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWIN 231 (231)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999984
No 2
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.4e-23 Score=159.76 Aligned_cols=113 Identities=26% Similarity=0.298 Sum_probs=93.5
Q ss_pred HHHHHHHhcccccccccccccccCCCCCHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhc
Q 032306 23 AKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSS 102 (143)
Q Consensus 23 ~~~~R~~Ll~~~~~~~~~~~~~~~~~~~~~~~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~ 102 (143)
+.++|++||.+..+++++. ..-+.|.++++++.|.+|++++|+++++|++++++|.+||.+|+++++|++++++
T Consensus 98 ~~~er~~lL~~~~~~~~~~------~~~~~D~el~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~n 171 (213)
T KOG3251|consen 98 QARERVELLDRRFTNGATG------TSIPFDEELQENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILN 171 (213)
T ss_pred HHHHHHHHhcCCCCCCCcc------CCCcchHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557899996532221111 1223578999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHHHHH
Q 032306 103 RLPSVNQILSSIKRKKSMDTIILALVAS-VCTFLIFIYWV 141 (143)
Q Consensus 103 ~l~~s~~ll~~I~rR~~~d~~Il~~vi~-~~i~~~l~y~~ 141 (143)
++|.||++|+.|+||.+.|++|++|+++ +|++|+++|.|
T Consensus 172 tLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w 211 (213)
T KOG3251|consen 172 TLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRW 211 (213)
T ss_pred hcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988766 55555555554
No 3
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-21 Score=148.97 Aligned_cols=135 Identities=16% Similarity=0.264 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcccccccccccccccCCCCCHHHHHHHH-------hhHHHhhHHH
Q 032306 3 YVFNVQSLGTEFYRLRSSLKAKQ-------EHASLLEDFREFDRTRLDLEDGVGSPEQALLKE-------HASINRSTGQ 68 (143)
Q Consensus 3 yr~~L~~~~~ef~r~~~~~~~~~-------~R~~Ll~~~~~~~~~~~~~~~~~~~~~~~ll~e-------~~~L~~S~~~ 68 (143)
|...|++|++|.++++..++... +|+++++...+. +.. .+ .+++++|++. +++|..|++.
T Consensus 70 ~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~ad-d~~--~~---~dQR~rLl~nTerLeRst~rl~ds~Ri 143 (220)
T KOG1666|consen 70 YLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEAD-DQN--IS---ADQRARLLQNTERLERSTDRLKDSQRI 143 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhcc-ccc--cc---hhHHHHHHhhhHHHHHhHHHHHHHHHH
Confidence 66778888888888777776533 566666543321 100 11 2344455554 4566777788
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHcC
Q 032306 69 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 69 ~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~~k 143 (143)
+.+++++|.+|+++|++||++|.+++.++++++.++|.|+++++.|.||..+++|+++++|++.++++++.+|+|
T Consensus 144 a~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~k 218 (220)
T KOG1666|consen 144 ALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998888888887776
No 4
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=99.71 E-value=4.9e-17 Score=103.64 Aligned_cols=66 Identities=35% Similarity=0.481 Sum_probs=63.7
Q ss_pred HHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhh
Q 032306 53 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK 118 (143)
Q Consensus 53 ~~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~ 118 (143)
++|++|+++|++|++++++++++|.+|+++|..||++|+++++|+.++.+++|.|+++|+.|.+|+
T Consensus 1 d~l~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR~ 66 (66)
T PF12352_consen 1 DRLLRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRRK 66 (66)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHccC
Confidence 478999999999999999999999999999999999999999999999999999999999999985
No 5
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=99.26 E-value=1e-10 Score=79.20 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=74.4
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 032306 59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFI 138 (143)
Q Consensus 59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~ 138 (143)
+++|.++++++.+.++++..+++.|.+|.++|+.+++...++...+..+.++++.++++...|++|++++++++++.++|
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~y 86 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLY 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999998776654444444
Q ss_pred HHH
Q 032306 139 YWV 141 (143)
Q Consensus 139 y~~ 141 (143)
++|
T Consensus 87 I~~ 89 (92)
T PF03908_consen 87 ILW 89 (92)
T ss_pred Hhh
Confidence 443
No 6
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.005 Score=49.52 Aligned_cols=81 Identities=7% Similarity=0.132 Sum_probs=64.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
.+++-...+-|+=++=.+.-....+|.|+++++-+-|.+++-.++.+.+.|-+-=.|...++|++.=+.+++++|+++||
T Consensus 228 ~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfv 307 (311)
T KOG0812|consen 228 TMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFV 307 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 44444444555545555566677899999999999999999999999999999999999999999888877766666666
Q ss_pred H
Q 032306 141 V 141 (143)
Q Consensus 141 ~ 141 (143)
+
T Consensus 308 l 308 (311)
T KOG0812|consen 308 L 308 (311)
T ss_pred H
Confidence 5
No 7
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.04 E-value=0.018 Score=38.17 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=36.2
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhH
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTI 123 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~ 123 (143)
+.+..-...++++-+.-.+..+.+-+-.+.|.....|-.++...-..-.+--+.+.++..-.++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~ 66 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNY 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666555555444444444444444443333
No 8
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.071 Score=37.53 Aligned_cols=84 Identities=14% Similarity=0.287 Sum_probs=57.8
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhc---cCc-hHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 032306 59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSS---RLP-SVNQILSSIKRKKSMDTIILALVASVCTF 134 (143)
Q Consensus 59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~---~l~-~s~~ll~~I~rR~~~d~~Il~~vi~~~i~ 134 (143)
++++++....+|++.++=.+-.+..-+=-+.|....+|-..+.. .|- .+.++=+.+=.+..+-.+|++.|++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888877777666666666666666666544443 332 33455556667778888888888887777
Q ss_pred HHHHHHHc
Q 032306 135 LIFIYWVT 142 (143)
Q Consensus 135 ~~l~y~~~ 142 (143)
++++|+|.
T Consensus 108 iiii~~~~ 115 (116)
T KOG0860|consen 108 VIIIYIFL 115 (116)
T ss_pred HHHHHHhc
Confidence 77777764
No 9
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.033 Score=39.16 Aligned_cols=86 Identities=9% Similarity=0.136 Sum_probs=50.3
Q ss_pred HHHHHHhhH-HHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhh--hHHHHHHH
Q 032306 53 QALLKEHAS-INRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMD--TIILALVA 129 (143)
Q Consensus 53 ~~ll~e~~~-L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d--~~Il~~vi 129 (143)
+.+-.|++. ++.=..-+-.+-+-...|-.+...|+..|.+..+-+..+..-+ ..++.++..=.++. ++..|-.+
T Consensus 28 ~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L---~gtm~r~~~~ar~sg~~l~~~m~~ 104 (118)
T KOG3385|consen 28 ASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFL---SGTMGRLKTMARRSGISLLCWMAV 104 (118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHH---HHHHHHHHHHHhcCCcchHHHHHH
Confidence 334355553 3333444555666778888889999999999888776665544 44555554444444 34444334
Q ss_pred HHHHHHHHHHHH
Q 032306 130 SVCTFLIFIYWV 141 (143)
Q Consensus 130 ~~~i~~~l~y~~ 141 (143)
++++.|+++|||
T Consensus 105 f~lV~~fi~~~~ 116 (118)
T KOG3385|consen 105 FSLVAFFILWVW 116 (118)
T ss_pred HHHHHHHHhhee
Confidence 444444444444
No 10
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.38 Score=37.93 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=57.2
Q ss_pred HHHHHHh-hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhh
Q 032306 53 QALLKEH-ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT 122 (143)
Q Consensus 53 ~~ll~e~-~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~ 122 (143)
..+++|+ +.|+.-+..+-.+-++|..+-+.|..|...|-.--.=|-.+.+.+....+-+..+.+......
T Consensus 144 qqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~ 214 (235)
T KOG3202|consen 144 QQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCS 214 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4566666 488888888889999999999999999999998888888888888888888888888444433
No 11
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=95.13 E-value=0.24 Score=39.04 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=55.7
Q ss_pred HHHHHHhhHHHhhHHHHHHH-------HHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHH
Q 032306 53 QALLKEHASINRSTGQMDSV-------ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125 (143)
Q Consensus 53 ~~ll~e~~~L~~S~~~~d~~-------~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il 125 (143)
+..++.+..++.. .++++ =+.+...-..|.+...+|..+...+..-...+...+.=+....++... |++
T Consensus 155 e~~l~~~~~~QE~--L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~ 230 (251)
T PF09753_consen 155 EKILQHHRNLQED--LTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG--CWT 230 (251)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHH
Confidence 4555555544432 33343 445555667788888888888888888888888888777777654444 444
Q ss_pred HHH-HHHHHHHHHHHHHcC
Q 032306 126 ALV-ASVCTFLIFIYWVTK 143 (143)
Q Consensus 126 ~~v-i~~~i~~~l~y~~~k 143 (143)
+.+ +++|++|+++|+|-|
T Consensus 231 ~~~i~~v~~~Fi~mvl~ir 249 (251)
T PF09753_consen 231 WLMIFVVIIVFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHHHHHHHHHHhe
Confidence 443 446666777776644
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=94.64 E-value=0.16 Score=32.56 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=37.0
Q ss_pred HhhHHhhHHHhhccCchHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHc
Q 032306 90 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 90 l~~~~~kl~~~~~~l~~s~-~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
+..+.+|+..+..++-..+ .+.+++.++.-||-=|+||+++.+++++++..++
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l~ 67 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIAQRAGKKIGRDIGILYGLVIGLIIFIIYIVLS 67 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443 4667888999999999999988777776666554
No 13
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=94.52 E-value=0.83 Score=30.05 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 69 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 69 ~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
+|.+++.| +-+++|..+-+.|...-..+.. .+..+=+.+-.+..+=.+|+++++++++++++++.
T Consensus 23 i~~ll~Rg-e~L~~L~~kt~~L~~~a~~F~k------~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i~~~~ 87 (89)
T PF00957_consen 23 IDKLLERG-EKLEELEDKTEELSDNAKQFKK------NAKKLKRKMWWRNYKLYIIIIIIVIIIILIIIIVI 87 (89)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC-chHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHH
Confidence 44556565 5667777777777666555553 44666677788888888888877776666655543
No 14
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=93.45 E-value=0.31 Score=31.25 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=26.1
Q ss_pred HHhhHHHhhccCchHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 032306 93 INSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLI 136 (143)
Q Consensus 93 ~~~kl~~~~~~l~~s~-~ll~~I~rR~~~d~~Il~~vi~~~i~~~ 136 (143)
+++|+.++...+...| .+-++|.++.-||--|+||.++.+++++
T Consensus 20 ~~kRLdeieekvef~~~Ev~Qr~GkkiGRDIGILYGlVIGlil~~ 64 (75)
T COG4064 20 IHKRLDEIEEKVEFVNGEVYQRIGKKIGRDIGILYGLVIGLILCM 64 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3334444443333332 4567788999999999988655433333
No 15
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=92.88 E-value=0.55 Score=30.06 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=33.7
Q ss_pred HhhHHhhHHHhhccCchHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 90 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 90 l~~~~~kl~~~~~~l~~s~-~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
++.+.+|+..+..++-..| .+.+++.++.-||-=|+||+++.+++++++..
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~GRDiGIlYG~viGlli~~~~~~ 65 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEVAQRIGKKVGRDIGILYGLVIGLILFLIYIL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444 46678888999999999998776555554443
No 16
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=92.84 E-value=0.53 Score=30.77 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=32.5
Q ss_pred HhhHHhhHHHhhccCchHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 032306 90 FGGINSKLSNVSSRLPSVN-QILSSIKRKKSMDTIILALVASVCTFLIFIY 139 (143)
Q Consensus 90 l~~~~~kl~~~~~~l~~s~-~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y 139 (143)
++.+++|+.++..++-..| .+.+++.++.-||-=|+||+++.+++++++.
T Consensus 17 ~~~i~~rLD~iEeKVEftn~Ei~Qr~GkkvGRDiGIlYG~viGlli~~i~~ 67 (77)
T PRK01026 17 FKEIQKRLDEIEEKVEFTNAEIFQRIGKKVGRDIGILYGLVIGLLIVLVYI 67 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444443 4667788889999999999877655555443
No 17
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=0.45 Score=38.28 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=49.3
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHH
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 115 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~ 115 (143)
++-.++...+.+....|..|+..|..|++.|.++...+-.+...+-...+.+..++
T Consensus 79 ~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 79 KSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 45566777888899999999999999999999999999999999888888877765
No 18
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=91.89 E-value=1.5 Score=26.29 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=46.8
Q ss_pred HHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHH
Q 032306 55 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ 109 (143)
Q Consensus 55 ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ 109 (143)
+......|.+....+.++.+++..+-..+..|++.|.++...+..+...+.....
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~ 61 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANK 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455568999999999999999999999999999999999999888877655543
No 19
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=91.43 E-value=2.1 Score=26.00 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=49.8
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhh
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKK 118 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~ 118 (143)
+.|..-...+.++-+++..+-..+..|.+.|.++...+..+...+...+.=+....+++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777778888899999999999999999999999999999988887777666665543
No 20
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=6.5 Score=30.60 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032306 3 YVFNVQSLGTEFYRLRS 19 (143)
Q Consensus 3 yr~~L~~~~~ef~r~~~ 19 (143)
|+..|.+++.|++++.+
T Consensus 77 yksdl~~l~~e~k~~~~ 93 (220)
T KOG1666|consen 77 YKSDLKKLKRELKRTTS 93 (220)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 89999999999999883
No 21
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=89.28 E-value=6.8 Score=30.78 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 032306 72 VISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 72 ~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~ 141 (143)
+-..+.+.-..|.+-++++..+-.-+..-...++..+.=+.+=...+.-+++-++.+|++|+.|+..+++
T Consensus 167 lKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMili 236 (244)
T KOG2678|consen 167 LKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMILI 236 (244)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666788888888887766666666777777766666666666666666677777777766554
No 22
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=88.67 E-value=4.9 Score=31.90 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=50.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhh----ccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 032306 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVS----SRLPSVNQILSSIKRKKSMDTIILALVASVCTFLI 136 (143)
Q Consensus 61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~----~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~ 136 (143)
-|..-..++-++-+-=..+-+...+|-+....+.+-+.+.- .-.+-.++-+.. -|..++.+|+.+|+++++++++
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~vi 264 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIVI 264 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHHH
Confidence 34444455555555555555566778888877777776544 445556667777 6777788888887766655555
Q ss_pred HHHH
Q 032306 137 FIYW 140 (143)
Q Consensus 137 l~y~ 140 (143)
++++
T Consensus 265 v~vv 268 (280)
T COG5074 265 VVVV 268 (280)
T ss_pred HHHH
Confidence 5544
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.04 E-value=12 Score=28.82 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHH
Q 032306 78 ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASV 131 (143)
Q Consensus 78 ~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~ 131 (143)
....+|.++++.|+. .+...-+.+.....-+....+....+.++.||++++
T Consensus 132 ~~~~~L~~~n~~L~~---~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~ 182 (206)
T PRK10884 132 SVINGLKEENQKLKN---QLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAG 182 (206)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHH
Confidence 333445555555533 233333334444555566666667777777776663
No 24
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=86.31 E-value=2.9 Score=25.96 Aligned_cols=30 Identities=3% Similarity=-0.026 Sum_probs=18.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 032306 109 QILSSIKRKKSMDTIILALVASVCTFLIFI 138 (143)
Q Consensus 109 ~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~ 138 (143)
....+-.+|.++-++|++++++++++++++
T Consensus 26 ~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 26 EEYRKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677788888776654444333
No 25
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=85.08 E-value=15 Score=29.77 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 032306 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ-ILSSIKRKKSMDTIILALVASVCTFLIFIY 139 (143)
Q Consensus 61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~-ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y 139 (143)
.+.+-++.+.|+-++=.+.-.-..+|.+...++---+.++...+-..++ +.......+++.++-++..+.+|++.+++.
T Consensus 196 eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~lfv~ 275 (283)
T COG5325 196 EIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLLFVS 275 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHHHHH
Confidence 4555555566665555555555678898888888888888776655554 555555566667887777777666655544
Q ss_pred H
Q 032306 140 W 140 (143)
Q Consensus 140 ~ 140 (143)
+
T Consensus 276 l 276 (283)
T COG5325 276 L 276 (283)
T ss_pred H
Confidence 3
No 26
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.44 E-value=13 Score=30.62 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=51.8
Q ss_pred HHHHHhhHHHhhHHHH-HHH----------HHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhh
Q 032306 54 ALLKEHASINRSTGQM-DSV----------ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT 122 (143)
Q Consensus 54 ~ll~e~~~L~~S~~~~-d~~----------~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~ 122 (143)
.+-.|+.+|.+--+.+ |++ ...=.-.-+.+-.|-+-+..+++=..++...+..+|.=|+++.+...+.+
T Consensus 215 ~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r 294 (316)
T KOG3894|consen 215 LLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLR 294 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccch
Confidence 3447777776655533 322 22222344567788899999999999999999999999999988877764
Q ss_pred -HHHHH
Q 032306 123 -IILAL 127 (143)
Q Consensus 123 -~Il~~ 127 (143)
|++++
T Consensus 295 ~~~lf~ 300 (316)
T KOG3894|consen 295 VFLLFF 300 (316)
T ss_pred hHHHHH
Confidence 44444
No 27
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=83.42 E-value=0.51 Score=27.05 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHc
Q 032306 127 LVASVCTFLIFIYWVT 142 (143)
Q Consensus 127 ~vi~~~i~~~l~y~~~ 142 (143)
++|++++++++++||+
T Consensus 22 ~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYR 37 (40)
T ss_pred HHHHHHHHHHhheEEe
Confidence 4455555454554544
No 28
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.94 E-value=24 Score=28.77 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCch-HHHHHHHHHHhhhhhh
Q 032306 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPS-VNQILSSIKRKKSMDT 122 (143)
Q Consensus 61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~-s~~ll~~I~rR~~~d~ 122 (143)
.|++|.+.+.++ =..+-.--..|.+.+.++-.-+.+....+.. ...|=..+...++-.|
T Consensus 210 ~LEksi~ELhql---FlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK 269 (297)
T KOG0810|consen 210 KLEKSIRELHQL---FLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARK 269 (297)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444443 2222233468999999999999998887776 4444444443333333
No 29
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.72 E-value=18 Score=29.48 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=39.6
Q ss_pred HHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHH
Q 032306 81 GALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL-ALVASVCTFLIFIY 139 (143)
Q Consensus 81 ~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il-~~vi~~~i~~~l~y 139 (143)
.....|.-.+-++-=-+.++.-++....+=+.++++..++++-.. +++.++|+|++++.
T Consensus 239 ~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii~llvl 298 (305)
T KOG0809|consen 239 ALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLIIALLVL 298 (305)
T ss_pred HHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHHHHHHH
Confidence 344578877777777777777788888888999999888875444 33333444444433
No 30
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=79.84 E-value=2.4 Score=30.14 Aligned_cols=9 Identities=22% Similarity=-0.042 Sum_probs=5.4
Q ss_pred hHHHHHHHH
Q 032306 122 TIILALVAS 130 (143)
Q Consensus 122 ~~Il~~vi~ 130 (143)
.+|++|||+
T Consensus 67 ~~Ii~gv~a 75 (122)
T PF01102_consen 67 IGIIFGVMA 75 (122)
T ss_dssp HHHHHHHHH
T ss_pred eehhHHHHH
Confidence 456666666
No 31
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=77.50 E-value=4 Score=24.20 Aligned_cols=29 Identities=3% Similarity=0.035 Sum_probs=19.6
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 032306 110 ILSSIKRKKSMDTIILALVASVCTFLIFI 138 (143)
Q Consensus 110 ll~~I~rR~~~d~~Il~~vi~~~i~~~l~ 138 (143)
..+.+-+|-++|+.-+.|++++++++++.
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl~a 32 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVLLA 32 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 34567788889998887776655444433
No 32
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=76.41 E-value=25 Score=27.65 Aligned_cols=55 Identities=4% Similarity=0.005 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 73 ISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 73 ~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
.+....+..++.++|+-+++.-..+.. ..+.-..+.+++..|+++++.+|++|.+
T Consensus 112 de~k~~~~~ei~k~r~e~~~ml~evK~-------------~~E~y~k~~k~~~~gi~aml~Vf~LF~l 166 (230)
T PF03904_consen 112 DELKNIAQNEIKKVREENKSMLQEVKQ-------------SHEKYQKRQKSMYKGIGAMLFVFMLFAL 166 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345555677777777777765555443 6778888889999888876655555543
No 33
>PF12669 P12: Virus attachment protein p12 family
Probab=76.38 E-value=1.8 Score=26.64 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLIFIYW 140 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~ 140 (143)
||++++|++.+++++++.
T Consensus 2 iII~~Ii~~~~~~v~~r~ 19 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRK 19 (58)
T ss_pred eeHHHHHHHHHHHHHHHH
Confidence 566666665555544333
No 34
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=75.45 E-value=14 Score=21.57 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=39.8
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHH
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVN 108 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~ 108 (143)
..|..-...+-++-+++..+-..+..|++.|..+...+..+...+....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~ 54 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRAN 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888889999999999999999999988887776654443
No 35
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=74.68 E-value=4.4 Score=22.24 Aligned_cols=13 Identities=23% Similarity=0.795 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 032306 129 ASVCTFLIFIYWV 141 (143)
Q Consensus 129 i~~~i~~~l~y~~ 141 (143)
|+++.++++.+||
T Consensus 12 v~iLt~~ILvFWf 24 (34)
T PF08113_consen 12 VMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 36
>PRK09759 small toxic polypeptide; Provisional
Probab=74.32 E-value=3.3 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHc
Q 032306 121 DTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 121 d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
+|..+.+++++|+-++++.|+.
T Consensus 3 ~k~~l~~liivCiTvL~f~~l~ 24 (50)
T PRK09759 3 QKYRLLSLIVICFTLLFFTWMI 24 (50)
T ss_pred ceeeHHHHHHHHHHHHHHHHHh
Confidence 4567777888887777777653
No 37
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=72.48 E-value=7.2 Score=24.26 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 032306 109 QILSSIKRKKSMDTIILALVASVCTFL 135 (143)
Q Consensus 109 ~ll~~I~rR~~~d~~Il~~vi~~~i~~ 135 (143)
.++++=.+|+++-.+++++ +++++++
T Consensus 31 eil~ker~R~r~~~~~~~l-i~aLi~v 56 (64)
T COG4068 31 EILNKERKRQRNFMILMFL-ILALILV 56 (64)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3455555555555555554 4443443
No 38
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=72.12 E-value=4.9 Score=29.63 Aligned_cols=20 Identities=25% Similarity=0.652 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHc
Q 032306 123 IILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~~~ 142 (143)
++++.|+.+++|.+++|||+
T Consensus 34 ILiaIvVliiiiivli~lcs 53 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCS 53 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555666777888888886
No 39
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.97 E-value=5.2 Score=31.75 Aligned_cols=27 Identities=4% Similarity=0.191 Sum_probs=20.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHc
Q 032306 116 RKKSMDTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 116 rR~~~d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
.|..|.-+++|+++..|++|+++|+++
T Consensus 215 nr~~R~~f~~Y~l~LH~lvf~~l~~~~ 241 (248)
T PF08172_consen 215 NRTTRMLFFFYCLGLHLLVFFVLYYMS 241 (248)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677788888888888888888764
No 40
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=69.14 E-value=7.5 Score=29.22 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=22.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHc
Q 032306 115 KRKKSMDTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 115 ~rR~~~d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
+|-++|+++|-.+||++.+..++|++.+
T Consensus 145 KR~Q~RHR~IG~~VlA~~VA~L~~~F~R 172 (215)
T PF05084_consen 145 KRTQKRHRLIGAVVLAVSVAMLTWFFLR 172 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999888887776653
No 41
>PRK09738 small toxic polypeptide; Provisional
Probab=67.67 E-value=4.4 Score=24.52 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHc
Q 032306 121 DTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 121 d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
++..+.+++++|+-++++.|+.
T Consensus 5 ~~~~~~~livvCiTvL~f~~l~ 26 (52)
T PRK09738 5 RSPLVWCVLIVCLTLLIFTYLT 26 (52)
T ss_pred cceehhhHHHHHHHHHHHHHHc
Confidence 4556667777777777776653
No 42
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=67.65 E-value=9.7 Score=25.32 Aligned_cols=9 Identities=44% Similarity=0.534 Sum_probs=3.4
Q ss_pred HHHHHHhhh
Q 032306 111 LSSIKRKKS 119 (143)
Q Consensus 111 l~~I~rR~~ 119 (143)
+++.++|..
T Consensus 5 ~kK~K~k~~ 13 (96)
T PF13800_consen 5 LKKAKRKSR 13 (96)
T ss_pred HHHHHHHHH
Confidence 333333333
No 43
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=64.40 E-value=2.2 Score=26.93 Aligned_cols=6 Identities=33% Similarity=0.822 Sum_probs=0.0
Q ss_pred HHHHHH
Q 032306 136 IFIYWV 141 (143)
Q Consensus 136 ~l~y~~ 141 (143)
+++|.+
T Consensus 31 f~iyR~ 36 (64)
T PF01034_consen 31 FLIYRM 36 (64)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333433
No 44
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=64.28 E-value=56 Score=24.19 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=31.9
Q ss_pred HHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 032306 78 ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 78 ~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~ 141 (143)
.+.+....|...+..++.|+..- ++..+.-|...+.-.- +|++|.+++++.+++.+|.|
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~e---i~~lr~~iE~~K~~~l--r~~~g~i~~~~a~~la~~r~ 175 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTE---IANLRTEIESLKWDTL--RWLVGVIFGCVALVLAILRL 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777776543 3334444443333332 46555444444455445444
No 45
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=63.22 E-value=4.4 Score=27.63 Aligned_cols=16 Identities=31% Similarity=0.798 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIF 137 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l 137 (143)
.++++.+.++|+++++
T Consensus 63 iili~lls~v~IlVil 78 (101)
T PF06024_consen 63 IILISLLSFVCILVIL 78 (101)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3444444445544443
No 46
>PHA02955 hypothetical protein; Provisional
Probab=62.32 E-value=8.1 Score=30.03 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHc
Q 032306 122 TIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~~ 142 (143)
++|+++|++++++++++|+.+
T Consensus 181 w~ii~~v~ii~~~v~l~yikR 201 (213)
T PHA02955 181 WFIIYIVLCLLILIILGYIYR 201 (213)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 466676776666666666654
No 47
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=61.27 E-value=38 Score=21.28 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=16.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 112 SSIKRKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 112 ~~I~rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
..|+.=..-.+|++..++++++.+++.++
T Consensus 41 ~~l~~I~~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 41 KQLEKIKSNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344557777777776666544443
No 48
>PRK09546 zntB zinc transporter; Reviewed
Probab=60.92 E-value=87 Score=25.26 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHcC
Q 032306 122 TIILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~~k 143 (143)
.+.+..++.+++.++++|||+|
T Consensus 299 gy~~~l~im~~i~~~~~~~fkr 320 (324)
T PRK09546 299 GFSIFCLLLVVLIGGVAWWLKR 320 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4444433334444444555543
No 49
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=60.17 E-value=22 Score=18.82 Aligned_cols=18 Identities=6% Similarity=0.141 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYWV 141 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~~ 141 (143)
|.+++++++++..++|.+
T Consensus 6 i~g~llv~lLl~YLvYAL 23 (29)
T PRK14750 6 VCGALLVLLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444455555555543
No 50
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.67 E-value=83 Score=24.58 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHH
Q 032306 66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIIL 125 (143)
Q Consensus 66 ~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il 125 (143)
...+-++-.+..+.++++-.=.+.|. .+.++.+.+....+....=-.+..++.++.
T Consensus 140 n~el~~v~~im~~niedvl~rg~~l~----~l~~~~s~l~~~s~~y~~~a~~in~~sl~~ 195 (216)
T KOG0862|consen 140 NQELQDVQRIMVENLEDVLQRGEVLN----ALSSMASELSSESRKYPKTAKGINRKSLIR 195 (216)
T ss_pred HHHHHHHHHHHHHhHHHHHhhchHHH----hhhhhhhcccHHHHhhHHHHHHHHHHHHHH
Confidence 33344445555566666655544443 345555566655544444444444454444
No 51
>COG4640 Predicted membrane protein [Function unknown]
Probab=59.66 E-value=7 Score=33.27 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=15.0
Q ss_pred hHHHH-HHHHHHHHHHHHHHHcC
Q 032306 122 TIILA-LVASVCTFLIFIYWVTK 143 (143)
Q Consensus 122 ~~Il~-~vi~~~i~~~l~y~~~k 143 (143)
++|+| +++++|||++++|+|.|
T Consensus 51 ~ii~was~a~~lIlii~~~~fgk 73 (465)
T COG4640 51 KIIPWASGAFILILIIILFFFGK 73 (465)
T ss_pred eeehhHHHHHHHHHHHHHHHHhh
Confidence 44554 45558888888888764
No 52
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=59.23 E-value=84 Score=24.54 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=22.1
Q ss_pred HHHhhHHHhhHHHHHHHHHHHHHHHH----HHHHhHHHHhhHHhhHHHhhc
Q 032306 56 LKEHASINRSTGQMDSVISQAQATLG----ALVFQRSTFGGINSKLSNVSS 102 (143)
Q Consensus 56 l~e~~~L~~S~~~~d~~~~~g~~~~~----~L~~Qr~~l~~~~~kl~~~~~ 102 (143)
+.=...|..+...+.+++..=..+++ .+...-..|+.+..|+....+
T Consensus 173 ~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~ 223 (251)
T PF09753_consen 173 LSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSS 223 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333333 233334556666666666654
No 53
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=58.38 E-value=28 Score=20.49 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=15.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 116 RKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 116 rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
++..++-++=.+.|.+|++++.++.
T Consensus 25 ~qnlqelfvnfclilicllli~iiv 49 (52)
T PF04272_consen 25 RQNLQELFVNFCLILICLLLICIIV 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777777665543
No 54
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=58.34 E-value=75 Score=23.68 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=13.9
Q ss_pred hHHHhhccCchHHHHHHHHHHhhhhh-hHHHHHHHH
Q 032306 96 KLSNVSSRLPSVNQILSSIKRKKSMD-TIILALVAS 130 (143)
Q Consensus 96 kl~~~~~~l~~s~~ll~~I~rR~~~d-~~Il~~vi~ 130 (143)
++..+-..+-.....-..|..+..+. +.+++++++
T Consensus 65 ~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~ 100 (180)
T PF04678_consen 65 RLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLA 100 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444333 333343333
No 55
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=57.05 E-value=29 Score=20.45 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=15.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 116 RKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 116 rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
++.-++-++=.+.|.+|++++.++.
T Consensus 25 r~~lq~lfvnf~lilicllli~iiv 49 (52)
T TIGR01294 25 RQNLQNLFINFCLILICLLLICIIV 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777776655443
No 56
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=56.82 E-value=35 Score=21.07 Aligned_cols=29 Identities=0% Similarity=0.123 Sum_probs=20.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 032306 113 SIKRKKSMDTIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 113 ~I~rR~~~d~~Il~~vi~~~i~~~l~y~~ 141 (143)
.-.++.++.+-.-+...++.++|+++|++
T Consensus 27 ~~~k~qk~~~~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 27 EYRKRQKRMRKTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777778777777777777776
No 57
>PHA03164 hypothetical protein; Provisional
Probab=56.51 E-value=18 Score=23.76 Aligned_cols=19 Identities=5% Similarity=0.048 Sum_probs=11.3
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 032306 109 QILSSIKRKKSMDTIILAL 127 (143)
Q Consensus 109 ~ll~~I~rR~~~d~~Il~~ 127 (143)
.--+.++.|+++=.+|+-.
T Consensus 46 tawnlwnnrRktftFlvLt 64 (88)
T PHA03164 46 TAWNLWNNRRKTFTFLVLT 64 (88)
T ss_pred hhHHHHHhhhheeehHHHH
Confidence 3345577777776666533
No 58
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=56.39 E-value=25 Score=23.27 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=11.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHH
Q 032306 113 SIKRKKSMDTIILALVASVCT 133 (143)
Q Consensus 113 ~I~rR~~~d~~Il~~vi~~~i 133 (143)
+|-+|.++-.++-..+|++|+
T Consensus 3 ~i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 3 KILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666554555443
No 59
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=56.34 E-value=22 Score=20.70 Aligned_cols=12 Identities=25% Similarity=0.121 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHc
Q 032306 131 VCTFLIFIYWVT 142 (143)
Q Consensus 131 ~~i~~~l~y~~~ 142 (143)
+|.+.+++|.|+
T Consensus 20 ~~F~gi~~w~~~ 31 (49)
T PF05545_consen 20 VFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHc
Confidence 334444555554
No 60
>PHA02902 putative IMV membrane protein; Provisional
Probab=55.50 E-value=19 Score=22.84 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=10.1
Q ss_pred hhHHHHHH--HHHHHHHHHHHH
Q 032306 121 DTIILALV--ASVCTFLIFIYW 140 (143)
Q Consensus 121 d~~Il~~v--i~~~i~~~l~y~ 140 (143)
|.+++.+| +++|++++..|-
T Consensus 4 dtfvi~~v~v~Ivclliya~Yr 25 (70)
T PHA02902 4 DTFVILAVIVIIFCLLIYAAYK 25 (70)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 446666655553
No 61
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=55.07 E-value=67 Score=22.12 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=29.3
Q ss_pred hHHHhhHHHHHHHHHHHHHHH---HHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHh
Q 032306 60 ASINRSTGQMDSVISQAQATL---GALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK 117 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~---~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR 117 (143)
.+|......++-+ .+|..|. +....|.+.++.-.-.+.....+|..+..+|..|+.|
T Consensus 37 q~L~kiE~~~~~l-~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkR 96 (102)
T PF01519_consen 37 QRLTKIENKLDQL-AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKR 96 (102)
T ss_dssp TB-BHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555522 2333332 4445566666655555555555666666666666555
No 62
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=54.50 E-value=13 Score=25.27 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYW 140 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~ 140 (143)
++++++++.++.+++|+
T Consensus 68 lls~v~IlVily~IyYF 84 (101)
T PF06024_consen 68 LLSFVCILVILYAIYYF 84 (101)
T ss_pred HHHHHHHHHHHhhheEE
Confidence 44455554444445543
No 63
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=54.04 E-value=22 Score=22.97 Aligned_cols=14 Identities=14% Similarity=0.484 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLI 136 (143)
Q Consensus 123 ~Il~~vi~~~i~~~ 136 (143)
+|++.++++|++++
T Consensus 51 ~ii~ii~v~ii~~l 64 (72)
T PF12575_consen 51 LIISIIFVLIIVLL 64 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444554444
No 64
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.61 E-value=1.2e+02 Score=24.49 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=40.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHH-HHhhhhhhHH
Q 032306 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI-KRKKSMDTII 124 (143)
Q Consensus 61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I-~rR~~~d~~I 124 (143)
.+.+-++.+-|+.++=..--.-..+|.+...++-..+.+.....-.-+.-+.+- ..+++..++.
T Consensus 181 ~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~ 245 (269)
T KOG0811|consen 181 AIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 444455555555555555555567899999999999998887666555555444 4444444443
No 65
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=52.76 E-value=4.7 Score=35.12 Aligned_cols=19 Identities=5% Similarity=0.181 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032306 5 FNVQSLGTEFYRLRSSLKA 23 (143)
Q Consensus 5 ~~L~~~~~ef~r~~~~~~~ 23 (143)
..|..|++-..++..-++.
T Consensus 48 ~~l~~Y~~tl~~Ll~Pi~~ 66 (490)
T PF00523_consen 48 QELDEYNNTLTELLTPIQD 66 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455555555555544433
No 66
>PRK12800 fliF flagellar MS-ring protein; Reviewed
Probab=52.73 E-value=45 Score=29.69 Aligned_cols=15 Identities=0% Similarity=0.140 Sum_probs=7.4
Q ss_pred hhhhhHHHHHHHHHH
Q 032306 118 KSMDTIILALVASVC 132 (143)
Q Consensus 118 ~~~d~~Il~~vi~~~ 132 (143)
....+++++++++++
T Consensus 28 ~~~r~i~l~~~~~~~ 42 (574)
T PRK12800 28 QITRKLTMMAMIALA 42 (574)
T ss_pred chhHHHHHHHHHHHH
Confidence 334466665554433
No 67
>PTZ00234 variable surface protein Vir12; Provisional
Probab=52.59 E-value=12 Score=32.20 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 032306 119 SMDTIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 119 ~~d~~Il~~vi~~~i~~~l~y~~ 141 (143)
.=..+|+|+.|+..|||+++|-.
T Consensus 363 ~~rniim~~ailGtifFlfyyn~ 385 (433)
T PTZ00234 363 YFRHSIVGASIIGVLVFLFFFFK 385 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 33456777666666666666643
No 68
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=52.40 E-value=25 Score=19.84 Aligned_cols=10 Identities=20% Similarity=1.062 Sum_probs=4.4
Q ss_pred HHHHHHHHHc
Q 032306 133 TFLIFIYWVT 142 (143)
Q Consensus 133 i~~~l~y~~~ 142 (143)
+++++++||+
T Consensus 22 ~imliif~f~ 31 (43)
T PF11395_consen 22 IIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHH
Confidence 3334445553
No 69
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=52.08 E-value=17 Score=24.31 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcC
Q 032306 120 MDTIILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 120 ~d~~Il~~vi~~~i~~~l~y~~~k 143 (143)
--.+...++++++++++.+|+..|
T Consensus 60 W~~fg~~~vVGvvLlv~viwLl~~ 83 (87)
T PF11190_consen 60 WGDFGATVVVGVVLLVFVIWLLTK 83 (87)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 346778888888888887777654
No 70
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=51.95 E-value=22 Score=18.39 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032306 125 LALVASVCTFLIFIYWV 141 (143)
Q Consensus 125 l~~vi~~~i~~~l~y~~ 141 (143)
+++++++.++..++|.+
T Consensus 2 i~~~l~~~L~~YL~~aL 18 (26)
T TIGR02115 2 ILLVLAVGLFIYLFYAL 18 (26)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666666666643
No 71
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=51.49 E-value=29 Score=19.80 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032306 3 YVFNVQSLGTEFYRLRSSLKAKQEHASL 30 (143)
Q Consensus 3 yr~~L~~~~~ef~r~~~~~~~~~~R~~L 30 (143)
+.++|.+.++|+.+.|..+-.+ -|.+|
T Consensus 9 KqEIL~EvrkEl~K~K~EIIeA-~~~eL 35 (40)
T PF08776_consen 9 KQEILEEVRKELQKVKEEIIEA-IRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4689999999999999986432 34444
No 72
>PF13997 YqjK: YqjK-like protein
Probab=51.21 E-value=63 Score=20.64 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 032306 80 LGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVC 132 (143)
Q Consensus 80 ~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~ 132 (143)
+..+..||.-|........++...++..-..+..+. +.-++.+++++++
T Consensus 2 l~qi~qQR~~La~~~~~w~~~ta~~Dr~w~~l~~lr----~~~~l~~g~~a~~ 50 (73)
T PF13997_consen 2 LRQIQQQRLDLAANAEPWLEATAPYDRGWQTLRSLR----RHPILGSGVLALY 50 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHH----HhHHHHHHHHHHH
Confidence 356788999999999999999998888888776443 3344445555544
No 73
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=49.90 E-value=12 Score=21.70 Aligned_cols=18 Identities=17% Similarity=0.611 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYWV 141 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~~ 141 (143)
.+.+++++|+-.+++.|+
T Consensus 3 ~l~~liviCiTvl~~~~l 20 (43)
T PF01848_consen 3 ALLCLIVICITVLIFTWL 20 (43)
T ss_pred eehhHHHHHHHHHHHHHH
Confidence 355677777777766665
No 74
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=48.83 E-value=22 Score=21.80 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHc
Q 032306 121 DTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 121 d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
|......++++|++|+++|.|.
T Consensus 12 d~~~~lLiliis~~f~lI~~l~ 33 (61)
T PF06692_consen 12 DYSGPLLILIISFVFFLITSLG 33 (61)
T ss_pred cchhHHHHHHHHHHHHHHhhhc
Confidence 4444444566777777777653
No 75
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=48.62 E-value=1e+02 Score=23.72 Aligned_cols=13 Identities=8% Similarity=0.703 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHcC
Q 032306 131 VCTFLIFIYWVTK 143 (143)
Q Consensus 131 ~~i~~~l~y~~~k 143 (143)
+++.++++|||+|
T Consensus 280 ~~~~~~~~~~~kR 292 (292)
T PF01544_consen 280 ILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHHHHCCTTS
T ss_pred HHHHHHHHHheeC
Confidence 3444444555544
No 76
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=48.20 E-value=57 Score=24.82 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=23.2
Q ss_pred HhhHHhhHHHhhc---cCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 032306 90 FGGINSKLSNVSS---RLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFI 138 (143)
Q Consensus 90 l~~~~~kl~~~~~---~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~ 138 (143)
+.+++--|...++ .+|..+.+.+..+ .+.++++++...+|+++++.
T Consensus 5 l~~is~aM~~l~~t~~~~piL~~ie~~~~---~~k~Y~~~~asf~~l~~lfs 53 (186)
T COG5052 5 LVNISVAMLVLDNTLQAFPILREIENLYN---RYKKYFMAGASFLYLLNLFS 53 (186)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhC---cchhhHHHHHHHHHHHHHHH
Confidence 3344444444444 4555555544444 44556666555566555544
No 77
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.54 E-value=60 Score=28.26 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHhhHHHhhHHHHHHHHHHHHHH-HHHHHHhHHHHhhHHhhHHHh
Q 032306 53 QALLKEHASINRSTGQMDSVISQAQAT-LGALVFQRSTFGGINSKLSNV 100 (143)
Q Consensus 53 ~~ll~e~~~L~~S~~~~d~~~~~g~~~-~~~L~~Qr~~l~~~~~kl~~~ 100 (143)
+.|.+|+++|..-...+|.-++++.+. ..++..|++.|+.-..++.+.
T Consensus 83 ~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 83 EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGL 131 (472)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888744 667777777777766665444
No 78
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=47.31 E-value=1.7e+02 Score=24.51 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=38.5
Q ss_pred CHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 032306 50 SPEQALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGG 92 (143)
Q Consensus 50 ~~~~~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~ 92 (143)
.+...|..|-..|..+...+..-+..+...+..|...+..|..
T Consensus 317 ~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~ 359 (384)
T PF03148_consen 317 PPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEE 359 (384)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445788999999999999999999999999999999988875
No 79
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.68 E-value=68 Score=25.88 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=42.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHH
Q 032306 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 113 (143)
Q Consensus 61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~ 113 (143)
-|..-..++..+=.+|..+-..|..|+..|.+++.++-.....+-..|.=+++
T Consensus 219 NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 219 NLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 46666666777778899999999999999999999999888777766654443
No 80
>PRK06287 cobalt transport protein CbiN; Validated
Probab=46.58 E-value=22 Score=24.49 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~ 141 (143)
-.|+++++++.++++++|.+
T Consensus 78 g~ilsgiiGv~i~l~l~~~~ 97 (107)
T PRK06287 78 GEIIAMVIGTLLVLALAYGV 97 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 36777888877777666654
No 81
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=46.19 E-value=42 Score=17.17 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 032306 2 AYVFNVQSLGTEFYRLRSSLK 22 (143)
Q Consensus 2 ryr~~L~~~~~ef~r~~~~~~ 22 (143)
.|...|..|..|+.+.+....
T Consensus 2 ~Yqakla~YqaeLa~vqk~na 22 (25)
T PF06696_consen 2 DYQAKLAQYQAELARVQKANA 22 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhh
Confidence 588899999999999988654
No 82
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.26 E-value=26 Score=24.82 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 032306 123 IILALVASVCTF 134 (143)
Q Consensus 123 ~Il~~vi~~~i~ 134 (143)
.+++|||+++++
T Consensus 72 gv~aGvIg~Ill 83 (122)
T PF01102_consen 72 GVMAGVIGIILL 83 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 356777775443
No 83
>PF11146 DUF2905: Protein of unknown function (DUF2905); InterPro: IPR021320 This is a family of bacterial proteins conserved of unknown function.
Probab=44.76 E-value=36 Score=21.42 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHcC
Q 032306 122 TIILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~~k 143 (143)
|+++..+++++++-.+++|..|
T Consensus 3 k~li~~gl~l~v~G~l~~~~~k 24 (64)
T PF11146_consen 3 KWLIVIGLILIVLGLLLPWLGK 24 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5666667777777777777654
No 84
>COG4420 Predicted membrane protein [Function unknown]
Probab=44.50 E-value=46 Score=25.46 Aligned_cols=47 Identities=2% Similarity=-0.030 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHH
Q 032306 64 RSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQI 110 (143)
Q Consensus 64 ~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~l 110 (143)
.+.+.+.+.+.....+..+..+|.+.=..+++|+.+-...+++|...
T Consensus 14 ~~~~~~~~~l~~~~~i~~~~~e~~~~~~t~gdR~ad~ia~f~Gsw~f 60 (191)
T COG4420 14 TVPARLFELLRENTPISSDRREEFEDGETFGDRVADKIARFGGSWAF 60 (191)
T ss_pred hhHHHHhHHHHhcchhhcchHHHHhcccchhhhHHHHHHHHcCChHH
Confidence 33444445555555666777777777777888888888888887654
No 85
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=44.18 E-value=2.6e+02 Score=25.82 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.8
Q ss_pred hhHHHHHHHH
Q 032306 121 DTIILALVAS 130 (143)
Q Consensus 121 d~~Il~~vi~ 130 (143)
.+|+.+.++.
T Consensus 412 yR~~~~lil~ 421 (806)
T PF05478_consen 412 YRWIVGLILC 421 (806)
T ss_pred HHHHHHHHHH
Confidence 4555554443
No 86
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=44.03 E-value=50 Score=17.50 Aligned_cols=19 Identities=21% Similarity=0.210 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLIFIYWV 141 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~~ 141 (143)
.++++++++.++..++|.+
T Consensus 5 ~~l~~~va~~L~vYL~~AL 23 (29)
T PRK14759 5 YSLAGAVSLGLLIYLTYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666543
No 87
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=43.91 E-value=6.8 Score=35.23 Aligned_cols=17 Identities=29% Similarity=0.147 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhHHHHh
Q 032306 75 QAQATLGALVFQRSTFG 91 (143)
Q Consensus 75 ~g~~~~~~L~~Qr~~l~ 91 (143)
.|..++..|.-|+..|.
T Consensus 225 ~AA~~Ln~ld~Q~~Al~ 241 (684)
T PF12877_consen 225 TAAKDLNLLDSQRMALI 241 (684)
T ss_pred HHHHHHhccCHHHHHHh
Confidence 56778888888888775
No 88
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=43.86 E-value=31 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.565 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 032306 121 DTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 121 d~~Il~~vi~~~i~~~l~y~ 140 (143)
|++.++...+++++|-++||
T Consensus 218 DR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 218 DRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhC
Confidence 67777777777777778887
No 89
>PF05644 Miff: Mitochondrial and peroxisomal fission factor Mff; InterPro: IPR008518 This family consists of several eukaryotic proteins of unknown function.
Probab=43.00 E-value=1.2e+02 Score=24.05 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=28.8
Q ss_pred HHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHc
Q 032306 87 RSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 87 r~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
|.++...+.||..+- ..-..|.+|.+++.+.++++|++= .|+||+
T Consensus 201 rrQi~klnrRl~~lE----------~~n~~r~~re~~~y~~~va~~l~n-~w~w~~ 245 (246)
T PF05644_consen 201 RRQIIKLNRRLQALE----------EENKERQQREMILYSITVAFWLLN-SWLWLR 245 (246)
T ss_pred HHHHHHHhHHHHHHH----------HHhHHHHhHHHHHHHHHHHHHHHH-HHHhhc
Confidence 344555666665443 234567888888888888887665 555664
No 90
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=42.18 E-value=86 Score=19.63 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=18.9
Q ss_pred HhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 032306 90 FGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLI 136 (143)
Q Consensus 90 l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~ 136 (143)
+++...++..+.++.-..-+ +|++++|++.+.++
T Consensus 36 i~~~~~~l~~I~~n~kW~~r-------------~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 36 IKNLNKQLEKIKSNTKWIWR-------------TIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 56666666655554444433 56666666555444
No 91
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=41.64 E-value=51 Score=16.82 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYWV 141 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~~ 141 (143)
|+++++++.++..++|.+
T Consensus 2 ~l~~~v~~~L~~YL~~aL 19 (25)
T PF09604_consen 2 ILGGIVAVALFVYLFYAL 19 (25)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455556655555555543
No 92
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=41.57 E-value=36 Score=25.73 Aligned_cols=31 Identities=3% Similarity=-0.002 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 110 ILSSIKRKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 110 ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
+...=..+.-|++.++.++.+++++.+++|.
T Consensus 25 ~~~~W~~ls~REq~ll~~~g~vL~l~i~Y~~ 55 (178)
T PRK09731 25 LAQHLAGRSPREKGMLLAAVVFLFSVGYYVL 55 (178)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777777755555444444443
No 93
>PHA02844 putative transmembrane protein; Provisional
Probab=41.27 E-value=43 Score=21.73 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIF 137 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l 137 (143)
.+|+..+.++|+++++
T Consensus 50 ~~ii~i~~v~~~~~~~ 65 (75)
T PHA02844 50 IWILTIIFVVFATFLT 65 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 94
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=40.60 E-value=36 Score=20.09 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLIFI 138 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~ 138 (143)
+|+.+++++|+++.+.
T Consensus 7 iili~iv~~Cl~lyl~ 22 (47)
T PRK10299 7 VVLVVVVLACLLLWAQ 22 (47)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4445556678776543
No 95
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=40.37 E-value=15 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=12.4
Q ss_pred HHHHhhhhhhHHHHHHHHHH
Q 032306 113 SIKRKKSMDTIILALVASVC 132 (143)
Q Consensus 113 ~I~rR~~~d~~Il~~vi~~~ 132 (143)
.+..|.++-++|+|++|+++
T Consensus 22 ~~r~ke~~~riiiGa~Vl~i 41 (416)
T PF04415_consen 22 SIREKERRKRIIIGAAVLII 41 (416)
T ss_pred ccchhhhhhhhhhhhhhHhH
Confidence 34556777778886654433
No 96
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=40.29 E-value=67 Score=17.85 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFI 138 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~ 138 (143)
|+.++.++++.+.++++
T Consensus 5 K~~Vy~vV~ffv~LFif 21 (36)
T PF02532_consen 5 KIFVYTVVIFFVSLFIF 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EEeehhhHHHHHHHHhc
Confidence 56677766644444443
No 97
>PF13190 PDGLE: PDGLE domain
Probab=40.09 E-value=38 Score=22.35 Aligned_cols=21 Identities=24% Similarity=0.274 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHc
Q 032306 122 TIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~~ 142 (143)
-.++++++++.++|.++|...
T Consensus 66 g~~lsgivGv~~~~~l~~~i~ 86 (88)
T PF13190_consen 66 GTILSGIVGVALTLALAYGIG 86 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887777654
No 98
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=40.06 E-value=45 Score=20.73 Aligned_cols=12 Identities=0% Similarity=0.063 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHc
Q 032306 131 VCTFLIFIYWVT 142 (143)
Q Consensus 131 ~~i~~~l~y~~~ 142 (143)
+|.+.+++|.|+
T Consensus 20 l~fiavi~~ayr 31 (60)
T COG4736 20 LFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHhc
Confidence 444444555554
No 99
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=39.78 E-value=38 Score=21.59 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=27.8
Q ss_pred HhhccCchHHHHHHHHHHhhhhhhHHHHHHHH
Q 032306 99 NVSSRLPSVNQILSSIKRKKSMDTIILALVAS 130 (143)
Q Consensus 99 ~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~ 130 (143)
+++..+|+++.++..|++-+.--.+.++.-|+
T Consensus 19 elA~~vgVsRQTi~~iEkgky~Psl~La~kia 50 (68)
T COG1476 19 ELAKLVGVSRQTIIAIEKGKYNPSLELALKIA 50 (68)
T ss_pred HHHHHcCcCHHHHHHHHcCCCCchHHHHHHHH
Confidence 56788999999999999998888999986555
No 100
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=39.66 E-value=60 Score=17.13 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYWV 141 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~~ 141 (143)
|.+++.++.++..+.|.+
T Consensus 6 i~G~ilv~lLlgYLvyAL 23 (29)
T PRK14748 6 ITGVLLVFLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445445555555555543
No 101
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.38 E-value=1.4e+02 Score=21.26 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=28.8
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHH
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 111 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll 111 (143)
.+|++-...+|+..++..+|.++..+=++-+..++..+..+...+.....=|
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665555555555555555444444433333
No 102
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=37.98 E-value=47 Score=21.69 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIY 139 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y 139 (143)
++|-+++++.+.+++|
T Consensus 12 v~GM~~VF~fL~lLi~ 27 (82)
T TIGR01195 12 VLGMGIVFLFLSLLIY 27 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3343444333333333
No 103
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=37.53 E-value=1.6e+02 Score=21.28 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=41.7
Q ss_pred HHhhHHHhhHHHHHHHHHHH-------HHHHHHHHHhHHHHhhHHhhHHHhhcc----CchHHHHHHHHHHhhhhhhHHH
Q 032306 57 KEHASINRSTGQMDSVISQA-------QATLGALVFQRSTFGGINSKLSNVSSR----LPSVNQILSSIKRKKSMDTIIL 125 (143)
Q Consensus 57 ~e~~~L~~S~~~~d~~~~~g-------~~~~~~L~~Qr~~l~~~~~kl~~~~~~----l~~s~~ll~~I~rR~~~d~~Il 125 (143)
+-.+.|+..+.-+.+++.|| -+++.--.+|+..|..++.++..+..+ +|.+-+.++. ..++.+.+
T Consensus 49 ~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsmls~----vmkqny~l 124 (177)
T PF12495_consen 49 QISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSMLSD----VMKQNYVL 124 (177)
T ss_pred HhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHhhhhh
Confidence 33345555555666666665 345555578999999999998877764 4555554443 34444544
Q ss_pred HHHH
Q 032306 126 ALVA 129 (143)
Q Consensus 126 ~~vi 129 (143)
..-|
T Consensus 125 slqi 128 (177)
T PF12495_consen 125 SLQI 128 (177)
T ss_pred hhhH
Confidence 4333
No 104
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=37.39 E-value=31 Score=28.42 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=5.7
Q ss_pred HHHhhhhhhHHH
Q 032306 114 IKRKKSMDTIIL 125 (143)
Q Consensus 114 I~rR~~~d~~Il 125 (143)
...+.+++.+++
T Consensus 103 ~~~~~~~~~~~~ 114 (331)
T PRK10856 103 GKRRKKRDGWLM 114 (331)
T ss_pred cccccccCCchH
Confidence 344555555443
No 105
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=37.21 E-value=40 Score=22.82 Aligned_cols=7 Identities=29% Similarity=0.074 Sum_probs=2.9
Q ss_pred hhHHHHH
Q 032306 121 DTIILAL 127 (143)
Q Consensus 121 d~~Il~~ 127 (143)
|-.|+.+
T Consensus 51 N~GIli~ 57 (103)
T PF06422_consen 51 NFGILIA 57 (103)
T ss_pred hHHHHHH
Confidence 4444433
No 106
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=36.67 E-value=60 Score=18.95 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 032306 125 LALVASVCTFLIFIYWVT 142 (143)
Q Consensus 125 l~~vi~~~i~~~l~y~~~ 142 (143)
+.++++.|+++.++-+++
T Consensus 30 i~aviGAiill~i~~~i~ 47 (48)
T PF04226_consen 30 IVAVIGAIILLFIYRLIR 47 (48)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455667777776665554
No 107
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=36.45 E-value=53 Score=21.81 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYW 140 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~ 140 (143)
++|.++.++.+++++|.
T Consensus 15 vlGmg~VflfL~iLi~~ 31 (84)
T COG3630 15 VLGMGFVFLFLSILIYA 31 (84)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555554
No 108
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=36.32 E-value=74 Score=17.95 Aligned_cols=6 Identities=67% Similarity=0.966 Sum_probs=2.3
Q ss_pred HHHHHH
Q 032306 123 IILALV 128 (143)
Q Consensus 123 ~Il~~v 128 (143)
+|.+++
T Consensus 8 IIv~V~ 13 (38)
T PF02439_consen 8 IIVAVV 13 (38)
T ss_pred HHHHHH
Confidence 344433
No 109
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=36.25 E-value=49 Score=20.89 Aligned_cols=6 Identities=0% Similarity=0.058 Sum_probs=2.2
Q ss_pred HHHHHH
Q 032306 125 LALVAS 130 (143)
Q Consensus 125 l~~vi~ 130 (143)
+|.+++
T Consensus 10 ~Gm~iV 15 (79)
T PF04277_consen 10 IGMGIV 15 (79)
T ss_pred HHHHHH
Confidence 333333
No 110
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=36.10 E-value=55 Score=20.76 Aligned_cols=17 Identities=24% Similarity=0.714 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYW 140 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~ 140 (143)
+++.|+.+|++.++-||
T Consensus 17 LIAvvLLLsIl~~lt~~ 33 (66)
T PF13179_consen 17 LIAVVLLLSILAFLTYW 33 (66)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666666665
No 111
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=34.74 E-value=38 Score=26.47 Aligned_cols=6 Identities=50% Similarity=1.337 Sum_probs=2.5
Q ss_pred HHHHHH
Q 032306 131 VCTFLI 136 (143)
Q Consensus 131 ~~i~~~ 136 (143)
+|.+++
T Consensus 143 ICT~Lf 148 (227)
T PF05399_consen 143 ICTLLF 148 (227)
T ss_pred HHHHHH
Confidence 444443
No 112
>PHA03054 IMV membrane protein; Provisional
Probab=34.69 E-value=65 Score=20.73 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFL 135 (143)
Q Consensus 123 ~Il~~vi~~~i~~ 135 (143)
+|+..++++|+++
T Consensus 51 ~ii~l~~v~~~~l 63 (72)
T PHA03054 51 LIIIFFIVLILLL 63 (72)
T ss_pred HHHHHHHHHHHHH
Confidence 3444333344433
No 113
>PHA02819 hypothetical protein; Provisional
Probab=34.22 E-value=66 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLI 136 (143)
Q Consensus 123 ~Il~~vi~~~i~~~ 136 (143)
+|+..+.++|++++
T Consensus 49 ~ii~l~~~~~~~~~ 62 (71)
T PHA02819 49 LIIGLVTIVFVIIF 62 (71)
T ss_pred HHHHHHHHHHHHHH
Confidence 44443444444333
No 114
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=34.01 E-value=31 Score=32.85 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=13.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHcC
Q 032306 123 IILAL-VASVCTFLIFIYWVTK 143 (143)
Q Consensus 123 ~Il~~-vi~~~i~~~l~y~~~k 143 (143)
+|+.+ +.+++++.+++|.++|
T Consensus 980 iIi~svl~GLLlL~llv~~LwK 1001 (1030)
T KOG3637|consen 980 IIILSVLGGLLLLALLVLLLWK 1001 (1030)
T ss_pred eehHHHHHHHHHHHHHHHHHHh
Confidence 44444 4447777788888776
No 115
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=33.85 E-value=54 Score=24.79 Aligned_cols=15 Identities=7% Similarity=-0.093 Sum_probs=8.0
Q ss_pred hhhhhhHHHHHHHHH
Q 032306 117 KKSMDTIILALVASV 131 (143)
Q Consensus 117 R~~~d~~Il~~vi~~ 131 (143)
+.-|++.|+.|+.++
T Consensus 31 ~~PREr~mL~g~Ga~ 45 (181)
T COG3149 31 LPPRERKMLLGGGAF 45 (181)
T ss_pred CChHHHHHHHHhhHH
Confidence 455666666544443
No 116
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=33.34 E-value=73 Score=18.69 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHH
Q 032306 122 TIILALVASVCT 133 (143)
Q Consensus 122 ~~Il~~vi~~~i 133 (143)
.+|+++||.+-+
T Consensus 6 t~iFsvvIil~I 17 (49)
T PF11044_consen 6 TTIFSVVIILGI 17 (49)
T ss_pred HHHHHHHHHHHH
Confidence 356776666444
No 117
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=33.09 E-value=1.4e+02 Score=19.48 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=25.4
Q ss_pred HHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 032306 78 ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFI 138 (143)
Q Consensus 78 ~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~ 138 (143)
.+-+.+..+...|+.+++-+. .+.+-+...+.--+.-.++.++|++++++
T Consensus 40 ~~~~e~~~~~~~l~~s~~ll~-----------~l~r~~~~D~~li~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 40 STNDEYDGQSSLLKKSRKLLK-----------KLERRDKTDRILIFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555443 23344455555555555555555555554
No 118
>PHA02975 hypothetical protein; Provisional
Probab=32.59 E-value=74 Score=20.32 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLI 136 (143)
Q Consensus 123 ~Il~~vi~~~i~~~ 136 (143)
+|+..+.++|+.++
T Consensus 47 ~ii~i~~v~~~~~~ 60 (69)
T PHA02975 47 LIIFIIFITCIAVF 60 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444443
No 119
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.33 E-value=1.7e+02 Score=22.91 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 69 MDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 69 ~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
++|++.. .++++.|..=..-+.....+.. .....|+++..=+++--+++++++++|++.||
T Consensus 154 iedvl~r-g~~l~~l~~~~s~l~~~s~~y~----------~~a~~in~~sl~~~~aa~~~~~~~l~f~~~f~ 214 (216)
T KOG0862|consen 154 LEDVLQR-GEVLNALSSMASELSSESRKYP----------KTAKGINRKSLIRKYAAYVVFFVLLLFYVRFI 214 (216)
T ss_pred HHHHHhh-chHHHhhhhhhhcccHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445544 4777777766666665554433 33444555555555554444444444433333
No 120
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=31.88 E-value=69 Score=21.84 Aligned_cols=17 Identities=6% Similarity=-0.103 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLIFIY 139 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y 139 (143)
.+++.++.+|++++.++
T Consensus 61 ~~~f~~~~~~~v~~~~~ 77 (105)
T PF10183_consen 61 LPFFFGFSGSLVFGGVF 77 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444443333
No 121
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.81 E-value=3.8e+02 Score=24.01 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-ccccccccccccCCCCCHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHH
Q 032306 9 SLGTEFYRLRSSLKAKQEHASLLED-FREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVISQAQATLG 81 (143)
Q Consensus 9 ~~~~ef~r~~~~~~~~~~R~~Ll~~-~~~~~~~~~~~~~~~~~~~~~ll~e~~~L~~S~~~~d~~~~~g~~~~~ 81 (143)
...++...++...++..++.++|.- +.-.+ ..+.. ......|..++.+|.++....+.+ ..|.+++.
T Consensus 168 ~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele--~~~l~---~gE~e~L~~e~~rLsn~ekl~~~~-~~a~~~L~ 235 (557)
T COG0497 168 QARRELEDLQEKERERAQRADLLQFQLEELE--ELNLQ---PGEDEELEEERKRLSNSEKLAEAI-QNALELLS 235 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCC---CchHHHHHHHHHHHhhHHHHHHHH-HHHHHHHh
Confidence 3344555555555566677777742 21100 01111 223467888888888887776655 34444443
No 122
>PHA02692 hypothetical protein; Provisional
Probab=31.55 E-value=72 Score=20.45 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 032306 127 LVASVCTFLI 136 (143)
Q Consensus 127 ~vi~~~i~~~ 136 (143)
.+.++|++++
T Consensus 53 ~~~~~~~vll 62 (70)
T PHA02692 53 LIAAAIGVLL 62 (70)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 123
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=30.92 E-value=82 Score=19.16 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFI 138 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~ 138 (143)
.+|+.|++++.++...+
T Consensus 32 ~~Ii~gii~~~~fV~~L 48 (56)
T PF11174_consen 32 HFIIVGIILAALFVAGL 48 (56)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 46666666644444333
No 124
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=30.33 E-value=55 Score=23.79 Aligned_cols=12 Identities=17% Similarity=0.075 Sum_probs=5.2
Q ss_pred HHhhHHhhHHHh
Q 032306 89 TFGGINSKLSNV 100 (143)
Q Consensus 89 ~l~~~~~kl~~~ 100 (143)
+++.+...|-.-
T Consensus 83 ~v~~~k~~LFs~ 94 (145)
T PF10661_consen 83 TVKETKDSLFSS 94 (145)
T ss_pred hHHHHHHHhhcc
Confidence 444444444433
No 125
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=29.93 E-value=1.3e+02 Score=18.10 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=7.9
Q ss_pred HHHHhhHHHhhHHHHHHH
Q 032306 55 LLKEHASINRSTGQMDSV 72 (143)
Q Consensus 55 ll~e~~~L~~S~~~~d~~ 72 (143)
|-..++.|.+++..++++
T Consensus 31 L~~Qre~L~~~~~kl~~i 48 (66)
T PF12352_consen 31 LRSQREQLKRVRDKLDDI 48 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 126
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=29.56 E-value=92 Score=19.22 Aligned_cols=15 Identities=13% Similarity=0.051 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 032306 127 LVASVCTFLIFIYWV 141 (143)
Q Consensus 127 ~vi~~~i~~~l~y~~ 141 (143)
+++++|+.+..|+|-
T Consensus 11 si~l~~v~l~~flWa 25 (58)
T COG3197 11 SILLGAVGLGAFLWA 25 (58)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344456666555553
No 127
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=29.34 E-value=94 Score=21.32 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 032306 119 SMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 119 ~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
++..++.+.+++.+++.+..|-
T Consensus 48 R~rN~~Tgl~L~~~v~gIY~YT 69 (100)
T PF09813_consen 48 RRRNLLTGLALGAFVVGIYAYT 69 (100)
T ss_pred hhhhHHHHHHHHHHHHHHHhhe
Confidence 4455667767776666655553
No 128
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=29.28 E-value=66 Score=25.08 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLIFIYWV 141 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~~ 141 (143)
+=+.+++.+++++++.|++
T Consensus 193 ~G~~vl~fL~il~~l~y~~ 211 (219)
T PF02167_consen 193 MGLKVLGFLLILTVLAYLL 211 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444455544
No 129
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=29.26 E-value=2.1e+02 Score=20.36 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=35.2
Q ss_pred HHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHH
Q 032306 54 ALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 114 (143)
Q Consensus 54 ~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I 114 (143)
..-.++..|..+-..+|.......+.+..=..+-..+...=.|+.++...+..++.+++.+
T Consensus 46 ~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~ 106 (131)
T PF10158_consen 46 AVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQT 106 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666655555555555555555555566666666666665555443
No 130
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=29.17 E-value=68 Score=28.43 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=10.5
Q ss_pred hhhhHHHHHHHH-HHHHHHHHHHH
Q 032306 119 SMDTIILALVAS-VCTFLIFIYWV 141 (143)
Q Consensus 119 ~~d~~Il~~vi~-~~i~~~l~y~~ 141 (143)
.+.+++++++++ ++.+++++|+|
T Consensus 24 ~~r~~~l~~~~~~~va~~~~~~~~ 47 (552)
T PRK07193 24 GNRKLILLALLALLVAAAIVLSLW 47 (552)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHh
Confidence 344555555544 33333444443
No 131
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.01 E-value=3.4e+02 Score=22.58 Aligned_cols=94 Identities=10% Similarity=0.131 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCHHHHHHHHhhHHHhhHHHHHHHHH-HHHHHHHH
Q 032306 4 VFNVQSLGTEFYRLRSSLKAKQEHASLLEDFREFDRTRLDLEDGVGSPEQALLKEHASINRSTGQMDSVIS-QAQATLGA 82 (143)
Q Consensus 4 r~~L~~~~~ef~r~~~~~~~~~~R~~Ll~~~~~~~~~~~~~~~~~~~~~~~ll~e~~~L~~S~~~~d~~~~-~g~~~~~~ 82 (143)
.++..++.+||+++....+.=.++-+-+.... + ... ..+-+...++..-...+..... ...+-.+.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ---~---~C~-------ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~ 69 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQ---D---KCS-------SSISHQKKRLKELKKSLKRCKKSLSAEEREL 69 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HHH-------HHHHHHHHHHHHHHHHHHHhccCCChhHHHH
Confidence 46788899999998887654333222222111 0 000 1111222222222222222211 11123334
Q ss_pred HHHhHHHHhhHHhhHHHhhccCchHHHH
Q 032306 83 LVFQRSTFGGINSKLSNVSSRLPSVNQI 110 (143)
Q Consensus 83 L~~Qr~~l~~~~~kl~~~~~~l~~s~~l 110 (143)
+.+-++.++..+..+.|+...+|.-|.+
T Consensus 70 i~~L~~~Ik~r~~~l~DmEa~LPkkNGl 97 (330)
T PF07851_consen 70 IEKLEEDIKERRCQLFDMEAFLPKKNGL 97 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHhhCCCCCCc
Confidence 4444555888888889999998887664
No 132
>PF13974 YebO: YebO-like protein
Probab=29.01 E-value=1.7e+02 Score=19.26 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=27.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhH
Q 032306 62 INRSTGQMDSVISQAQATLGALVFQRSTFGGI 93 (143)
Q Consensus 62 L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~ 93 (143)
+++++..+++.++.=.++++.-..|++.|++.
T Consensus 18 VnRaSvRANEQI~LL~~ileqQKrQn~LL~rL 49 (80)
T PF13974_consen 18 VNRASVRANEQIELLEEILEQQKRQNALLRRL 49 (80)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999653
No 133
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=28.38 E-value=1.4e+02 Score=24.08 Aligned_cols=27 Identities=15% Similarity=0.296 Sum_probs=20.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 114 IKRKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 114 I~rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
.=-|.+-|--+++.+++|||=|||+++
T Consensus 165 ylARNFYNlr~lALflAFaINFILLFY 191 (274)
T PF06459_consen 165 YLARNFYNLRFLALFLAFAINFILLFY 191 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888889999999887765543
No 134
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=27.81 E-value=84 Score=22.54 Aligned_cols=20 Identities=5% Similarity=-0.155 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHH-HHHHHHH
Q 032306 121 DTIILALVASVCT-FLIFIYW 140 (143)
Q Consensus 121 d~~Il~~vi~~~i-~~~l~y~ 140 (143)
-+.+++++++++. .+++++|
T Consensus 74 wk~v~~~~~~~i~~s~~~~~~ 94 (136)
T cd00922 74 WKTVFGGVLAFIGITGVIFGL 94 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4566766655443 3334433
No 135
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=27.80 E-value=71 Score=26.77 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=7.3
Q ss_pred hhhhhhHHHHHHHHH
Q 032306 117 KKSMDTIILALVASV 131 (143)
Q Consensus 117 R~~~d~~Il~~vi~~ 131 (143)
|-++.+.+++|++++
T Consensus 83 r~~~R~~~~~G~~~f 97 (385)
T PF06898_consen 83 RLRRRKGFVAGIVLF 97 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555544443
No 136
>PRK05529 cell division protein FtsQ; Provisional
Probab=27.74 E-value=69 Score=25.25 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=18.1
Q ss_pred HHHHHHhhhhhhHHHHHHHH---HHHHHHHHHHHc
Q 032306 111 LSSIKRKKSMDTIILALVAS---VCTFLIFIYWVT 142 (143)
Q Consensus 111 l~~I~rR~~~d~~Il~~vi~---~~i~~~l~y~~~ 142 (143)
.+++-+|.++-+.++.++++ ++++++.+|++|
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~S 58 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVGAVLTLLLFVMLSAYS 58 (255)
T ss_pred hhchhhhccchhhhHHHHHHHHHHHHHHHHHheeC
Confidence 66777777777666665543 333333444443
No 137
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=27.72 E-value=1.1e+02 Score=23.77 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHHHH
Q 032306 120 MDTIILALVASVCTFLI 136 (143)
Q Consensus 120 ~d~~Il~~vi~~~i~~~ 136 (143)
+-++|+++++++.++.+
T Consensus 178 ~~W~i~~~~~i~~i~~i 194 (215)
T PHA02947 178 KPWFIVGVVIILIIFVI 194 (215)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 34555544444443333
No 138
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=27.37 E-value=33 Score=26.83 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 032306 125 LALVASVCTFLI 136 (143)
Q Consensus 125 l~~vi~~~i~~~ 136 (143)
++|+|+++++++
T Consensus 44 VAG~~tVILVI~ 55 (221)
T PF08374_consen 44 VAGIMTVILVIF 55 (221)
T ss_pred ecchhhhHHHHH
Confidence 344444333333
No 139
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=27.18 E-value=1e+02 Score=21.62 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhhhH----------------HHHHHHHHH
Q 032306 107 VNQILSSIKRKKSMDTI----------------ILALVASVC 132 (143)
Q Consensus 107 s~~ll~~I~rR~~~d~~----------------Il~~vi~~~ 132 (143)
+|.++.++..|.-+.+. +++|++..+
T Consensus 39 ~N~lID~lGH~Ei~~~~g~i~~RTPlTHT~pRSv~WGli~sl 80 (114)
T PF06939_consen 39 GNTLIDRLGHKEIRTRYGYIPVRTPLTHTLPRSVLWGLIPSL 80 (114)
T ss_pred HHHHHHhcccHHHhcCCCcceecCCCccCcchhhHHHHHHHH
Confidence 46666666664444433 677777655
No 140
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=27.06 E-value=1.1e+02 Score=18.29 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 032306 131 VCTFLIFIYW 140 (143)
Q Consensus 131 ~~i~~~l~y~ 140 (143)
.++++..++|
T Consensus 15 ~~~~l~~f~W 24 (51)
T TIGR00847 15 GGVGLVAFLW 24 (51)
T ss_pred HHHHHHHHHH
Confidence 3333333433
No 141
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=27.01 E-value=1.2e+02 Score=17.65 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 032306 134 FLIFIYW 140 (143)
Q Consensus 134 ~~~l~y~ 140 (143)
++..++|
T Consensus 17 ~l~~f~W 23 (45)
T PF03597_consen 17 ALAAFLW 23 (45)
T ss_pred HHHHHHH
Confidence 3333333
No 142
>PHA02503 putative transcription regulator; Provisional
Probab=26.97 E-value=58 Score=19.50 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHH
Q 032306 3 YVFNVQSLGTEFY 15 (143)
Q Consensus 3 yr~~L~~~~~ef~ 15 (143)
|++.|.+|..+|-
T Consensus 22 yke~l~~~s~~fl 34 (57)
T PHA02503 22 YKEKLSVYSKDFL 34 (57)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777777773
No 143
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=26.95 E-value=93 Score=22.49 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 032306 120 MDTIILALVASVCTFLIFI 138 (143)
Q Consensus 120 ~d~~Il~~vi~~~i~~~l~ 138 (143)
--+.|++++++++.+-+++
T Consensus 73 ewk~v~~~~~~~i~~s~~l 91 (142)
T PF02936_consen 73 EWKKVFGGVFIFIGFSVLL 91 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3456777666644443333
No 144
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=26.85 E-value=1.7e+02 Score=19.14 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHH
Q 032306 107 VNQILSSIKRKKSMDTIILALVAS 130 (143)
Q Consensus 107 s~~ll~~I~rR~~~d~~Il~~vi~ 130 (143)
..+.-..|+++.++++.++...++
T Consensus 39 lk~~d~~i~kK~k~kK~iiiS~i~ 62 (84)
T PF09716_consen 39 LKKIDDKIEKKKKNKKKIIISTIA 62 (84)
T ss_pred HhhhhHHHHHHHhccchhhHHHHH
Confidence 344557788887777777665555
No 145
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=26.80 E-value=80 Score=21.53 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFIYW 140 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~ 140 (143)
..|-++||+.+++.+.+|-
T Consensus 59 N~is~a~i~alViaIY~YT 77 (108)
T KOG4782|consen 59 NHISFAGIGALVIAIYGYT 77 (108)
T ss_pred hhhhhHHHHHHHHHhhhhe
Confidence 4566667777777766653
No 146
>PRK11519 tyrosine kinase; Provisional
Probab=26.69 E-value=1.2e+02 Score=27.57 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHc
Q 032306 119 SMDTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 119 ~~d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
.+.+|++.+++++|+++.++|.+.
T Consensus 28 ~r~~~~i~~~~~~~~~~a~~y~~~ 51 (719)
T PRK11519 28 IEARWWVIGITAVFALCAVVYTFF 51 (719)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344566656666666666666653
No 147
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=26.55 E-value=88 Score=20.86 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=10.4
Q ss_pred hhhhhHHHHHHHHHH
Q 032306 118 KSMDTIILALVASVC 132 (143)
Q Consensus 118 ~~~d~~Il~~vi~~~ 132 (143)
.+-|+.|++.+++++
T Consensus 33 ~kPNk~iM~~Gl~a~ 47 (86)
T PF14937_consen 33 VKPNKPIMAFGLIAI 47 (86)
T ss_pred ccCCchhhHHHHHHH
Confidence 345899998776643
No 148
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=26.55 E-value=1.2e+02 Score=18.73 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHHHHHH
Q 032306 118 KSMDTIILALVASVCTFLIF 137 (143)
Q Consensus 118 ~~~d~~Il~~vi~~~i~~~l 137 (143)
.+|+-||...++++|++=++
T Consensus 16 ~~r~e~itFl~la~~l~Pil 35 (62)
T COG4459 16 EKRSEWITFLFLAFGLFPIL 35 (62)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 34568888888888876443
No 149
>PF05933 Fun_ATP-synt_8: Fungal ATP synthase protein 8 (A6L); InterPro: IPR009230 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from fungi. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit differs in sequence between fungi, Metazoa (IPR001421 from INTERPRO) and plants (IPR003319 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=26.46 E-value=65 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHcC
Q 032306 131 VCTFLIFIYWVTK 143 (143)
Q Consensus 131 ~~i~~~l~y~~~k 143 (143)
+.++.+++|.+||
T Consensus 17 f~~l~il~yl~Sk 29 (48)
T PF05933_consen 17 FLILSILLYLFSK 29 (48)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555666654
No 150
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=26.44 E-value=94 Score=20.74 Aligned_cols=12 Identities=0% Similarity=-0.006 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 032306 124 ILALVASVCTFL 135 (143)
Q Consensus 124 Il~~vi~~~i~~ 135 (143)
.++++.++.++|
T Consensus 41 ~FWv~LA~FV~~ 52 (90)
T PF15183_consen 41 AFWVSLAAFVVF 52 (90)
T ss_pred hHHHHHHHHHHH
Confidence 345455543333
No 151
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=26.40 E-value=1.3e+02 Score=24.70 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032306 121 DTIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 121 d~~Il~~vi~~~i~~~l~y~~ 141 (143)
.+|++.++.++|+++-++|.+
T Consensus 30 ~k~~Ii~~~~~~~~lg~~Ya~ 50 (325)
T PRK15471 30 GKMTIIISVIVAIALAVGYLA 50 (325)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554
No 152
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=25.97 E-value=68 Score=24.35 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHcC
Q 032306 122 TIILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~~k 143 (143)
+|+..++++++++...+|+++|
T Consensus 35 ~~~~i~~~a~i~i~~v~~~~~~ 56 (181)
T PRK06654 35 QWVAIGLFAVIFIVTVVYFVSK 56 (181)
T ss_pred HHHHHHHHHHHHHhhhhhhhhh
Confidence 4555555555555555566554
No 153
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=25.92 E-value=1.1e+02 Score=16.01 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFIYW 140 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~ 140 (143)
.+|++.+.++++-.+...|
T Consensus 5 aWilG~~lA~~~~i~~a~w 23 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAMW 23 (28)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677766665444433333
No 154
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=25.84 E-value=87 Score=20.71 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 032306 133 TFLIFIY 139 (143)
Q Consensus 133 i~~~l~y 139 (143)
++++++|
T Consensus 24 ~fL~lLi 30 (85)
T PRK03814 24 IFLTLLV 30 (85)
T ss_pred HHHHHHH
Confidence 3333333
No 155
>cd00930 Cyt_c_Oxidase_VIII Cytochrome oxidase c subunit VIII. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIII is the smallest of the nuclear-encoded subunits. It exists in muscle-specific and non-muscle-specific isoforms that are differently expressed in different species, suggesting species-specific regulation of energy metabolism.
Probab=25.78 E-value=1.2e+02 Score=17.59 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHc
Q 032306 121 DTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 121 d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
++.|..+++++++++.--|+++
T Consensus 14 E~aigl~~~f~~~L~p~gWVLs 35 (43)
T cd00930 14 ESAIGLSVFFTTFLLPAGWVLS 35 (43)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 5677777777777776666553
No 156
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=25.72 E-value=72 Score=25.03 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 032306 121 DTIILALVASVCTFLIF 137 (143)
Q Consensus 121 d~~Il~~vi~~~i~~~l 137 (143)
-++|+++|++++++|++
T Consensus 186 ~W~i~~~v~~i~~i~vv 202 (226)
T PHA02662 186 PWTLLLAVAAVTVLGVV 202 (226)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 45666777766666665
No 157
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=25.46 E-value=1.2e+02 Score=16.19 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLI 136 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~ 136 (143)
.||++.+.++.+-.+
T Consensus 5 aWilG~~lA~~~~v~ 19 (30)
T TIGR02106 5 AWILGTLLACAFGVL 19 (30)
T ss_pred HHHHHHHHHHHHHHH
Confidence 467776666444333
No 158
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=25.40 E-value=2.2e+02 Score=22.41 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 032306 68 QMDSVISQAQATLGALVFQRS 88 (143)
Q Consensus 68 ~~d~~~~~g~~~~~~L~~Qr~ 88 (143)
.+.+-+++|.-.+..++.|-.
T Consensus 19 rle~qi~q~~~~~~~~qs~l~ 39 (251)
T COG5415 19 RLESQIHQLDVALKKSQSILS 39 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544433
No 159
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=25.35 E-value=1.4e+02 Score=17.11 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHc
Q 032306 131 VCTFLIFIYWVT 142 (143)
Q Consensus 131 ~~i~~~l~y~~~ 142 (143)
++|++.++|++.
T Consensus 18 f~Ill~L~ylYg 29 (42)
T PF12459_consen 18 FAILLALIYLYG 29 (42)
T ss_pred HHHHHHHHHHHh
Confidence 666666666653
No 160
>PRK11901 hypothetical protein; Reviewed
Probab=25.33 E-value=82 Score=26.14 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 032306 120 MDTIILALVASVCTFLIFI 138 (143)
Q Consensus 120 ~d~~Il~~vi~~~i~~~l~ 138 (143)
|+-+.++++|.+++++|+-
T Consensus 35 RQh~MiGiGilVLlLLIi~ 53 (327)
T PRK11901 35 RQHMMIGIGILVLLLLIIA 53 (327)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655544
No 161
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=25.20 E-value=1.5e+02 Score=26.47 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.3
Q ss_pred HHHhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 032306 97 LSNVSSRLPSVNQILSSIKRKKSMDTIILALVASVC 132 (143)
Q Consensus 97 l~~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~ 132 (143)
..++.+.++.+...+..+.+..-+..+++..|-.+|
T Consensus 121 ~a~l~~fV~~iD~fV~~lq~~~E~k~~~l~~v~~~~ 156 (574)
T COG3850 121 QADLADFVAQIDQFVLALQRFAERKTILLVLVQLAG 156 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788899999999999999888776554443
No 162
>COG3462 Predicted membrane protein [Function unknown]
Probab=24.82 E-value=99 Score=21.66 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIY 139 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y 139 (143)
|+++++.+.++++++|
T Consensus 55 I~~~vvli~lvvfm~~ 70 (117)
T COG3462 55 IFWAVVLIFLVVFMFY 70 (117)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444333333333
No 163
>PF15431 TMEM190: Transmembrane protein 190
Probab=24.53 E-value=1.5e+02 Score=20.83 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHcC
Q 032306 128 VASVCTFLIFIYWVTK 143 (143)
Q Consensus 128 vi~~~i~~~l~y~~~k 143 (143)
+..++++.+-++||.|
T Consensus 70 gll~Li~~iclFWWAk 85 (134)
T PF15431_consen 70 GLLLLICSICLFWWAK 85 (134)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3335555555556543
No 164
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=24.41 E-value=66 Score=15.90 Aligned_cols=13 Identities=38% Similarity=0.485 Sum_probs=8.4
Q ss_pred chHHHHHHHHHHH
Q 032306 2 AYVFNVQSLGTEF 14 (143)
Q Consensus 2 ryr~~L~~~~~ef 14 (143)
.|..-+.++++||
T Consensus 9 kY~g~i~~Lr~Ef 21 (22)
T PF03789_consen 9 KYSGYISSLRQEF 21 (22)
T ss_pred HHhHhHHHHHHHh
Confidence 4666666666666
No 165
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=24.22 E-value=71 Score=25.71 Aligned_cols=10 Identities=10% Similarity=-0.014 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 032306 123 IILALVASVC 132 (143)
Q Consensus 123 ~Il~~vi~~~ 132 (143)
+|+|++++.+
T Consensus 275 IaVG~~La~l 284 (306)
T PF01299_consen 275 IAVGAALAGL 284 (306)
T ss_pred HHHHHHHHHH
Confidence 4455544433
No 166
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.17 E-value=4.5e+02 Score=22.40 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 032306 10 LGTEFYRLRSSLKAKQEHASLLE 32 (143)
Q Consensus 10 ~~~ef~r~~~~~~~~~~R~~Ll~ 32 (143)
|.+|+.-+...+++++.|.+.|.
T Consensus 242 ~~~e~~~~~~~LqEEr~R~erLE 264 (395)
T PF10267_consen 242 YQREYQFILEALQEERYRYERLE 264 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 55566666666666666766664
No 167
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=24.11 E-value=67 Score=24.35 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=16.1
Q ss_pred HHHHhhhhhhHHHHHHHH-HHHHHHHHH
Q 032306 113 SIKRKKSMDTIILALVAS-VCTFLIFIY 139 (143)
Q Consensus 113 ~I~rR~~~d~~Il~~vi~-~~i~~~l~y 139 (143)
...+|.+.-.+|+.+..+ .|++|+++|
T Consensus 77 ~v~~rlk~t~lI~~alAfl~Cv~~Lv~Y 104 (186)
T PF06387_consen 77 EVSERLKVTRLIAFALAFLGCVVFLVMY 104 (186)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhh
Confidence 344555555566554433 788777776
No 168
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=24.05 E-value=91 Score=26.18 Aligned_cols=14 Identities=14% Similarity=-0.071 Sum_probs=6.5
Q ss_pred hhhhhhHHHHHHHH
Q 032306 117 KKSMDTIILALVAS 130 (143)
Q Consensus 117 R~~~d~~Il~~vi~ 130 (143)
|-++.+.+++|+++
T Consensus 80 r~~kRk~~~~G~~~ 93 (382)
T TIGR02876 80 RLRKRPGILIGILL 93 (382)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555544433
No 169
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=24.01 E-value=32 Score=18.57 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=17.1
Q ss_pred HHhhccCchHHHHHHHHHHhhhhhhH
Q 032306 98 SNVSSRLPSVNQILSSIKRKKSMDTI 123 (143)
Q Consensus 98 ~~~~~~l~~s~~ll~~I~rR~~~d~~ 123 (143)
.++++.+|.+..+++++-.+-.++.+
T Consensus 6 ~diA~~lG~t~ETVSR~l~~l~~~gl 31 (32)
T PF00325_consen 6 QDIADYLGLTRETVSRILKKLERQGL 31 (32)
T ss_dssp HHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHcCC
Confidence 46677777777777777766666544
No 170
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=24.01 E-value=4.5e+02 Score=23.47 Aligned_cols=61 Identities=15% Similarity=0.045 Sum_probs=44.3
Q ss_pred HHHHhhHHHhhHHHHHHHHHHHH---------HHHHHHHHhHHHHhhHHhhHHHhh-----ccCchHHHHHHHHH
Q 032306 55 LLKEHASINRSTGQMDSVISQAQ---------ATLGALVFQRSTFGGINSKLSNVS-----SRLPSVNQILSSIK 115 (143)
Q Consensus 55 ll~e~~~L~~S~~~~d~~~~~g~---------~~~~~L~~Qr~~l~~~~~kl~~~~-----~~l~~s~~ll~~I~ 115 (143)
.+..+.+.-.-++..|+++++|. .++..+..|++.|--..+|+..+. +.+|.|..-+..-.
T Consensus 251 ~lg~~~stvtl~q~~deL~~ig~n~~~~P~~~~~rdei~aq~eqLi~~s~kv~EafRt~~~sqigns~qql~t~~ 325 (673)
T COG4192 251 VLGQTASTVTLHQLSDELDAIGHNDLSHPITVDGRDEIGAQSEQLILYSKKVEEAFRTNALSQIGNSQQQLITCD 325 (673)
T ss_pred HhcCCchhhHHHHHHHHHHHhcCCcccCCchhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCchHHHHHHHh
Confidence 44445566667788899888886 688999999999999998887764 34566655554444
No 171
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=24.00 E-value=59 Score=21.24 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 032306 121 DTIILALVASVCTFLIFIY 139 (143)
Q Consensus 121 d~~Il~~vi~~~i~~~l~y 139 (143)
++.-++.|+.+|+++.+++
T Consensus 27 qkt~faFV~~L~~fL~~li 45 (81)
T PF11057_consen 27 QKTAFAFVGLLCLFLGLLI 45 (81)
T ss_pred cceeehHHHHHHHHHHHHH
Confidence 3445666677776665543
No 172
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.87 E-value=1.4e+02 Score=27.07 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 032306 119 SMDTIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 119 ~~d~~Il~~vi~~~i~~~l~y~~ 141 (143)
.+.+|++.+++++|+++.++|.+
T Consensus 28 ~r~~~~i~~~~~~~~~~a~~y~~ 50 (726)
T PRK09841 28 WDHRKFIISVTALFTLIAVAYSL 50 (726)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555555656555556554
No 173
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=23.79 E-value=77 Score=22.67 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 032306 134 FLIFIYWV 141 (143)
Q Consensus 134 ~~~l~y~~ 141 (143)
.++++|||
T Consensus 41 a~~L~~~F 48 (128)
T PHA02689 41 ALALALVF 48 (128)
T ss_pred HHHHHHHH
Confidence 33344444
No 174
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=23.63 E-value=73 Score=26.74 Aligned_cols=18 Identities=17% Similarity=0.587 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 032306 125 LALVASVCTFLIFIYWVT 142 (143)
Q Consensus 125 l~~vi~~~i~~~l~y~~~ 142 (143)
.+.++++++|++++|++|
T Consensus 85 k~~~~G~~~f~~ll~~lS 102 (382)
T TIGR02876 85 PGILIGILLFLAIVYFLS 102 (382)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356777899998999886
No 175
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=23.55 E-value=91 Score=17.96 Aligned_cols=8 Identities=38% Similarity=1.489 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 032306 133 TFLIFIYW 140 (143)
Q Consensus 133 i~~~l~y~ 140 (143)
++|+++||
T Consensus 25 L~fFLV~W 32 (44)
T PF08135_consen 25 LFFFLVYW 32 (44)
T ss_pred HHHHHHHH
Confidence 34444444
No 176
>PHA02849 putative transmembrane protein; Provisional
Probab=23.05 E-value=1e+02 Score=20.20 Aligned_cols=8 Identities=13% Similarity=0.529 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 032306 132 CTFLIFIY 139 (143)
Q Consensus 132 ~i~~~l~y 139 (143)
+++++++|
T Consensus 29 i~~flLly 36 (82)
T PHA02849 29 FLAFMLLY 36 (82)
T ss_pred HHHHHHHH
Confidence 33444444
No 177
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=22.76 E-value=3.5e+02 Score=20.55 Aligned_cols=59 Identities=8% Similarity=0.127 Sum_probs=47.7
Q ss_pred HHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHH
Q 032306 54 ALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILS 112 (143)
Q Consensus 54 ~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~ 112 (143)
.+-.=...|+.+...++.+...+...-.+|.+++..|..++.|+..+...|.....=+.
T Consensus 110 q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 110 QLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567888888889999999999999999999999999999988877665554433
No 178
>COG3766 Predicted membrane protein [Function unknown]
Probab=22.65 E-value=2.2e+02 Score=20.46 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=28.8
Q ss_pred cCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 032306 103 RLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 103 ~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~ 141 (143)
-+|.++-+-+.|+.-..---++.+|++++.+.++.|+.+
T Consensus 56 llG~~~plassi~~s~sl~~~~~Wg~~~~vvqLl~f~i~ 94 (133)
T COG3766 56 LLGYVIPLASSISHSVSLPDYLAWGAIALVVQLLVFFIV 94 (133)
T ss_pred HHhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777778889999987777777654
No 179
>PHA03240 envelope glycoprotein M; Provisional
Probab=22.65 E-value=96 Score=24.44 Aligned_cols=8 Identities=13% Similarity=0.115 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 032306 123 IILALVAS 130 (143)
Q Consensus 123 ~Il~~vi~ 130 (143)
||+..||+
T Consensus 215 WIiilIIi 222 (258)
T PHA03240 215 WIFIAIII 222 (258)
T ss_pred HHHHHHHH
Confidence 44444443
No 180
>KOG3443 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.65 E-value=2.9e+02 Score=20.90 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=39.0
Q ss_pred HHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHH
Q 032306 78 ATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126 (143)
Q Consensus 78 ~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~ 126 (143)
.+++-+..|++.|++....-.-+.|-...+.+.+.....|..++...+.
T Consensus 32 tv~~iI~aqkQml~rfektnemllNc~~l~~~rl~~as~r~l~H~~tL~ 80 (184)
T KOG3443|consen 32 TVLEIIHAQKQMLERFEKTNEMLLNCNKLSVKRLDLASERFLQHLITLT 80 (184)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888877777778888888888888888888876654
No 181
>PHA02590 hypothetical protein; Provisional
Probab=22.51 E-value=1.5e+02 Score=20.23 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=29.1
Q ss_pred HhhHHhhHHHhhccCchHHHHHHHHHHhhhhhhHHHH
Q 032306 90 FGGINSKLSNVSSRLPSVNQILSSIKRKKSMDTIILA 126 (143)
Q Consensus 90 l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~~Il~ 126 (143)
.+.+.+++..++...+...+++..|.|..--.++|=.
T Consensus 3 ~e~~~e~Vi~LaqKY~~~k~il~~IRr~~ie~KII~~ 39 (105)
T PHA02590 3 VEEMQEKVINLAQKYTNQKRILRLIRRSNIEEKIIKE 39 (105)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888899888888888887754
No 182
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.33 E-value=1.1e+02 Score=23.35 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032306 125 LALVASVCTFLIFIYWV 141 (143)
Q Consensus 125 l~~vi~~~i~~~l~y~~ 141 (143)
++-+|.++++++++++|
T Consensus 52 i~qlInFlIlv~lL~k~ 68 (205)
T PRK06231 52 IAHLIAFSILLLLGIFL 68 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555443
No 183
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.29 E-value=87 Score=23.53 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHH-HHHHHHHHHHHc
Q 032306 119 SMDTIILALVAS-VCTFLIFIYWVT 142 (143)
Q Consensus 119 ~~d~~Il~~vi~-~~i~~~l~y~~~ 142 (143)
..|...++.+++ +|.+.+++|+-+
T Consensus 148 ~~~w~~f~~~~~~~~~~p~ll~~~s 172 (181)
T PF05753_consen 148 VMDWGAFAIMTLPVLLIPYLLWYSS 172 (181)
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 455666665555 333333444443
No 184
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=21.96 E-value=1.2e+02 Score=20.57 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=9.2
Q ss_pred HHHHHHH-HHHHHHHHHHH
Q 032306 123 IILALVA-SVCTFLIFIYW 140 (143)
Q Consensus 123 ~Il~~vi-~~~i~~~l~y~ 140 (143)
++++|+. +++++++++|+
T Consensus 20 ~~faGgll~~~il~~iLYi 38 (96)
T PF13571_consen 20 FYFAGGLLGLFILFVILYI 38 (96)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4454443 35555555554
No 185
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=21.44 E-value=1.4e+02 Score=19.66 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHH
Q 032306 2 AYVFNVQSLGTEFYRLRSSLKA 23 (143)
Q Consensus 2 ryr~~L~~~~~ef~r~~~~~~~ 23 (143)
||.++.++|+.+++.+...+.+
T Consensus 17 Rw~~i~~~~k~~i~~l~~~~~~ 38 (95)
T PF15508_consen 17 RWVQIAKDYKDEIRELIEVLKD 38 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888876654
No 186
>PHA02655 hypothetical protein; Provisional
Probab=21.41 E-value=51 Score=21.38 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q 032306 127 LVASVCTFLIFIYW 140 (143)
Q Consensus 127 ~vi~~~i~~~l~y~ 140 (143)
.|+..|+++.++|.
T Consensus 74 ivmisciflviiyi 87 (94)
T PHA02655 74 IVMISCIFLVIIYI 87 (94)
T ss_pred HHHHHHHHhhheee
Confidence 35667888777664
No 187
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.27 E-value=94 Score=25.37 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 032306 69 MDSVISQAQATLGAL 83 (143)
Q Consensus 69 ~d~~~~~g~~~~~~L 83 (143)
+-.+++.+.+--..+
T Consensus 185 ~LT~IGLaAAKaAAi 199 (295)
T TIGR01478 185 LLGNIGIAAAKTAAI 199 (295)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455554444433
No 188
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=21.08 E-value=97 Score=18.71 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYWV 141 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~~ 141 (143)
|+..+++++.+++.+|++
T Consensus 2 ~~l~~i~~l~~~~~l~~l 19 (59)
T PF02495_consen 2 ILLLLIGLLAFLLTLYLL 19 (59)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 344455555555556554
No 189
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=21.02 E-value=2.8e+02 Score=18.77 Aligned_cols=8 Identities=25% Similarity=0.559 Sum_probs=3.2
Q ss_pred HHHHHHHh
Q 032306 110 ILSSIKRK 117 (143)
Q Consensus 110 ll~~I~rR 117 (143)
+++.|+..
T Consensus 38 iI~~IN~~ 45 (118)
T PF10256_consen 38 IINTINQI 45 (118)
T ss_pred HHHHHHHH
Confidence 33444433
No 190
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=20.94 E-value=1e+02 Score=19.95 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHHH
Q 032306 120 MDTIILALVASVCTF 134 (143)
Q Consensus 120 ~d~~Il~~vi~~~i~ 134 (143)
|+-+++.+++++.++
T Consensus 2 kn~~l~~~vv~l~~~ 16 (74)
T PF02553_consen 2 KNLLLLLLVVALAVV 16 (74)
T ss_pred ceeHHHHHHHHHHHH
Confidence 344555544443333
No 191
>PHA02967 hypothetical protein; Provisional
Probab=20.69 E-value=89 Score=22.34 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 032306 133 TFLIFIYWV 141 (143)
Q Consensus 133 i~~~l~y~~ 141 (143)
+.++++|||
T Consensus 37 val~L~~~F 45 (128)
T PHA02967 37 VALIIINFF 45 (128)
T ss_pred HHHHHHHHH
Confidence 333344444
No 192
>PHA03240 envelope glycoprotein M; Provisional
Probab=20.68 E-value=1.1e+02 Score=24.19 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHcC
Q 032306 122 TIILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~~k 143 (143)
.-+.+.+|+++++.+++.||.|
T Consensus 211 aH~~WIiilIIiIiIIIL~cfK 232 (258)
T PHA03240 211 AHIAWIFIAIIIIIVIILFFFK 232 (258)
T ss_pred chHhHHHHHHHHHHHHHHHHHh
Confidence 4566766667776666666543
No 193
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=20.55 E-value=1.6e+02 Score=17.75 Aligned_cols=12 Identities=0% Similarity=0.337 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 032306 124 ILALVASVCTFL 135 (143)
Q Consensus 124 Il~~vi~~~i~~ 135 (143)
++++.|+.+.+|
T Consensus 27 lM~~~m~lf~vf 38 (52)
T PF00737_consen 27 LMGVFMALFAVF 38 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555533333
No 194
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=20.48 E-value=3.2e+02 Score=21.72 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=23.8
Q ss_pred HhhccCchHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 032306 99 NVSSRLPSVNQILSSIKRKKSMDTIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 99 ~~~~~l~~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~~ 141 (143)
+..-.+++..-+...+..-...|-..+.++..+++++++++.|
T Consensus 122 g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~f 164 (333)
T PF03176_consen 122 GLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVF 164 (333)
T ss_pred CcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHH
Confidence 3344666666777777666666655555444444444444443
No 195
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=20.26 E-value=92 Score=17.85 Aligned_cols=13 Identities=23% Similarity=0.151 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHH
Q 032306 3 YVFNVQSLGTEFY 15 (143)
Q Consensus 3 yr~~L~~~~~ef~ 15 (143)
||.||.++..+-.
T Consensus 22 YRKIlndLs~~~~ 34 (41)
T PF02173_consen 22 YRKILNDLSSEDT 34 (41)
T ss_dssp HHHHHHHHHHH--
T ss_pred HHHHHHHhccccc
Confidence 7888888766543
No 196
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=20.13 E-value=1.4e+02 Score=20.51 Aligned_cols=15 Identities=13% Similarity=0.335 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFI 138 (143)
Q Consensus 124 Il~~vi~~~i~~~l~ 138 (143)
++++|++++++-+|+
T Consensus 20 LVGVv~~al~~SlLI 34 (102)
T PF15176_consen 20 LVGVVVTALVTSLLI 34 (102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444333333
No 197
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=20.10 E-value=71 Score=26.96 Aligned_cols=9 Identities=11% Similarity=0.545 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 032306 133 TFLIFIYWV 141 (143)
Q Consensus 133 i~~~l~y~~ 141 (143)
++-||.|||
T Consensus 383 lvGfLcWwf 391 (397)
T PF03302_consen 383 LVGFLCWWF 391 (397)
T ss_pred HHHHHhhhe
Confidence 345556666
Done!