Query 032306
Match_columns 143
No_of_seqs 123 out of 517
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 20:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_C Vesicle transport throu 99.4 1.8E-12 6E-17 85.1 8.2 70 53-122 12-81 (81)
2 1gl2_C VTI1B, vesicle transpor 99.2 1.9E-11 6.4E-16 77.0 5.0 63 54-116 3-65 (65)
3 1n7s_C SNAP-25A; neuronal snar 98.7 9.2E-08 3.1E-12 62.2 7.7 61 55-115 18-78 (79)
4 1nhl_A Synaptosomal-associated 98.4 6.8E-07 2.3E-11 53.9 5.0 51 63-113 3-53 (54)
5 3b5n_C Protein transport prote 97.5 0.00041 1.4E-08 43.8 7.0 57 60-116 12-68 (70)
6 1l4a_C S-SNAP25 fusion protein 97.1 0.00026 8.9E-09 46.2 2.8 55 60-114 27-81 (83)
7 3hd7_A Vesicle-associated memb 96.5 0.031 1.1E-06 36.7 9.1 78 60-137 5-86 (91)
8 3hd7_B Syntaxin-1A; membrane p 93.5 1.1 3.7E-05 30.0 11.9 57 59-115 20-76 (109)
9 2kog_A Vesicle-associated memb 93.5 0.044 1.5E-06 37.7 2.6 79 57-135 30-112 (119)
10 2l34_A TYRO protein tyrosine k 91.9 0.22 7.4E-06 26.6 3.4 21 123-143 12-32 (33)
11 1gl2_D Syntaxin 8, vesicle tra 86.5 2.1 7.2E-05 25.7 5.6 52 60-111 9-60 (65)
12 1n7s_D SNAP-25A; neuronal snar 86.2 3 0.0001 25.0 6.2 54 60-113 10-63 (66)
13 3b5n_D Protein transport prote 85.2 2.5 8.7E-05 25.6 5.4 50 61-110 11-60 (64)
14 2nps_D Syntaxin-6; vesicle fus 84.9 4 0.00014 25.7 6.5 59 59-117 18-76 (82)
15 1sfc_D Protein (SNAP-25B), pro 84.6 2.6 8.8E-05 27.0 5.6 61 54-114 22-83 (87)
16 1l4a_D S-SNAP25 fusion protein 82.4 2.6 9E-05 27.0 4.9 56 59-114 29-84 (87)
17 2kog_A Vesicle-associated memb 78.1 3.1 0.00011 28.3 4.4 55 66-120 32-89 (119)
18 4b19_A PEPA1; toxin, toxin apo 74.6 0.51 1.7E-05 24.5 -0.3 20 124-143 7-26 (30)
19 2ks1_B Epidermal growth factor 73.9 2.5 8.5E-05 23.8 2.4 10 128-137 21-30 (44)
20 2l35_A DAP12-NKG2C_TM; immunor 71.1 4.9 0.00017 24.3 3.4 21 123-143 12-32 (63)
21 2knc_A Integrin alpha-IIB; tra 69.0 3.9 0.00013 24.1 2.6 21 123-143 14-35 (54)
22 2l8s_A Integrin alpha-1; trans 68.4 4.1 0.00014 24.0 2.6 20 123-142 11-31 (54)
23 2k1a_A Integrin alpha-IIB; sin 64.1 5.9 0.0002 22.0 2.6 20 123-142 12-32 (42)
24 2w6b_A RHO guanine nucleotide 58.2 23 0.0008 20.7 4.5 28 3-30 15-43 (56)
25 1use_A VAsp, vasodilator-stimu 56.4 13 0.00043 21.0 3.1 20 4-23 14-33 (45)
26 2lx0_A Membrane fusion protein 54.5 12 0.00039 19.0 2.4 18 124-141 8-25 (32)
27 1afo_A Glycophorin A; integral 51.9 20 0.00069 19.6 3.3 11 122-132 13-23 (40)
28 1fjk_A Cardiac phospholamban; 47.3 29 0.00098 19.6 3.6 23 117-139 26-48 (52)
29 2k9p_A Pheromone alpha factor 47.1 37 0.0012 21.4 4.6 32 109-140 9-40 (80)
30 2nps_C Vesicle transport throu 43.6 57 0.0019 20.2 6.9 27 53-79 5-31 (81)
31 2iub_A CORA, divalent cation t 42.7 1.2E+02 0.0041 23.7 11.2 15 7-21 223-237 (363)
32 2knc_B Integrin beta-3; transm 39.3 22 0.00076 22.2 2.6 7 124-130 13-19 (79)
33 3arc_I Photosystem II reaction 38.8 46 0.0016 17.9 3.4 17 122-138 5-21 (38)
34 2k9j_B Integrin beta-3; transm 38.3 27 0.00094 19.2 2.6 7 124-130 12-18 (43)
35 2klu_A T-cell surface glycopro 36.1 40 0.0014 20.6 3.3 16 124-139 13-28 (70)
36 1qle_D Cytochrome AA3, ccytoch 35.9 41 0.0014 18.6 3.1 16 125-140 25-40 (43)
37 1m56_D Cytochrome C oxidase; m 35.8 46 0.0016 19.1 3.4 18 124-141 32-49 (51)
38 2yiu_B Cytochrome C1, heme pro 32.8 33 0.0011 26.4 3.1 20 122-141 229-248 (263)
39 3cx5_D Cytochrome C1, heme pro 32.0 35 0.0012 26.1 3.1 20 122-141 207-226 (248)
40 1pp9_D Cytochrome C-1, cytochr 30.1 39 0.0013 25.6 3.1 20 122-141 203-222 (241)
41 3j1r_A Archaeal adhesion filam 29.7 56 0.0019 16.1 3.4 8 135-142 19-26 (26)
42 1zrt_D Cytochrome C1; cytochro 28.9 42 0.0014 25.8 3.1 19 123-141 227-245 (258)
43 2qjy_B Cytochrome C1; cytochro 28.4 43 0.0015 25.9 3.1 19 123-141 229-247 (269)
44 1jdm_A Sarcolipin; helix, memb 27.4 52 0.0018 16.7 2.3 17 120-136 6-22 (31)
45 2k9y_A Ephrin type-A receptor 27.3 27 0.00092 18.6 1.3 7 123-129 14-20 (41)
46 2l6w_A Beta-type platelet-deri 32.8 14 0.00046 20.2 0.0 6 136-141 27-32 (39)
47 3cqx_C BAG family molecular ch 26.4 1E+02 0.0034 19.7 4.1 33 56-91 3-35 (88)
48 3hd7_A Vesicle-associated memb 25.3 1.3E+02 0.0045 18.9 9.8 30 72-101 10-39 (91)
49 1kdx_B CREB; complex (transcri 25.1 45 0.0015 16.8 1.8 11 3-13 16-26 (28)
50 2f95_B Sensory rhodopsin II tr 25.0 37 0.0013 22.4 2.0 11 131-141 69-79 (163)
51 2jwa_A Receptor tyrosine-prote 23.9 97 0.0033 17.2 3.3 8 123-130 13-20 (44)
52 3hd7_B Syntaxin-1A; membrane p 23.8 1.5E+02 0.0052 19.1 9.4 27 67-93 49-75 (109)
53 1yod_A Water-solublized phosph 22.3 87 0.003 15.7 3.9 23 117-139 5-27 (30)
54 3p8c_D Wiskott-aldrich syndrom 21.3 1.7E+02 0.006 22.5 5.4 47 56-102 28-78 (279)
55 2kwh_A RAla-binding protein 1; 21.0 1.1E+02 0.0039 17.8 3.2 22 77-98 6-27 (56)
56 1b9u_A Protein (ATP synthase); 20.7 95 0.0032 15.6 3.4 12 125-136 8-19 (34)
57 3w03_C DNA repair protein XRCC 20.3 2.1E+02 0.0072 20.7 5.3 37 63-99 137-173 (184)
No 1
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.38 E-value=1.8e-12 Score=85.12 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=65.2
Q ss_pred HHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHhhhhhh
Q 032306 53 QALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRKKSMDT 122 (143)
Q Consensus 53 ~~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR~~~d~ 122 (143)
+.|-+..++|++|.+.+.|++++|.+|+++|..||++|.++++++.++++.+..|.++|+.|.+|..+||
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~nK 81 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQNR 81 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhCC
Confidence 5677788899999999999999999999999999999999999999999999999999999999998875
No 2
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.20 E-value=1.9e-11 Score=77.03 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=56.5
Q ss_pred HHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHH
Q 032306 54 ALLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR 116 (143)
Q Consensus 54 ~ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~r 116 (143)
.|-+..++|++|.+.+.+++++|.+|+++|..||++|.++++++.+++..+..+.++|+.|.|
T Consensus 3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~R 65 (65)
T 1gl2_C 3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSR 65 (65)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhcC
Confidence 344677899999999999999999999999999999999999999999999999999998864
No 3
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=98.67 E-value=9.2e-08 Score=62.20 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=57.3
Q ss_pred HHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHH
Q 032306 55 LLKEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 115 (143)
Q Consensus 55 ll~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~ 115 (143)
+-+..+++++|.+++.++.+.|.+|+.+|..|+++|.+++++|.++.+.+..+.++|+.|.
T Consensus 18 ~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 18 ADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 3455689999999999999999999999999999999999999999999999999999886
No 4
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=98.35 E-value=6.8e-07 Score=53.95 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=48.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHH
Q 032306 63 NRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 113 (143)
Q Consensus 63 ~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~ 113 (143)
++|.+.+.++.+.|.+|++.|..|++.|.++++.|.++.+.+..+.++++.
T Consensus 3 ~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 3 RRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence 578899999999999999999999999999999999999999999988864
No 5
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.52 E-value=0.00041 Score=43.81 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=52.5
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHH
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKR 116 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~r 116 (143)
++-+++.+++.+..+.|.+|+..|..|.+.|.++...|-.+...+..+..-+..++.
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 567888899999999999999999999999999999999999999999988888764
No 6
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.13 E-value=0.00026 Score=46.17 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=47.8
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHH
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 114 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I 114 (143)
++-+++.+++.+..+.|..|+..|..|++.|.++...|-.|.+.+..+.+.++.+
T Consensus 27 ~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L 81 (83)
T 1l4a_C 27 ESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5778888899999999999999999999999999999999998887776655544
No 7
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.48 E-value=0.031 Score=36.67 Aligned_cols=78 Identities=12% Similarity=0.261 Sum_probs=37.6
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhcc---Cc-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSR---LP-SVNQILSSIKRKKSMDTIILALVASVCTFL 135 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~---l~-~s~~ll~~I~rR~~~d~~Il~~vi~~~i~~ 135 (143)
+.|......+||+-++-.+..+.+-+-.+.|....+|-.++.+. +- .+..+=+.+-.+..+=.+|+++++++++++
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~i 84 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILII 84 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444444444444444443333321 11 334455556666666666666555444444
Q ss_pred HH
Q 032306 136 IF 137 (143)
Q Consensus 136 ~l 137 (143)
++
T Consensus 85 i~ 86 (91)
T 3hd7_A 85 II 86 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 8
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=93.52 E-value=1.1 Score=30.02 Aligned_cols=57 Identities=7% Similarity=-0.020 Sum_probs=44.3
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHH
Q 032306 59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIK 115 (143)
Q Consensus 59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~ 115 (143)
++.+.+-.+.+.++-++-.+.-.-...|.+.+.++-.-+.++...+...+.=+..-.
T Consensus 20 ~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (109)
T 3hd7_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666777777777777889999999999999999998888877775553
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=93.45 E-value=0.044 Score=37.73 Aligned_cols=79 Identities=9% Similarity=0.224 Sum_probs=48.9
Q ss_pred HHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHH----HHHHHHHhhhhhhHHHHHHHHHH
Q 032306 57 KEHASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQ----ILSSIKRKKSMDTIILALVASVC 132 (143)
Q Consensus 57 ~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~----ll~~I~rR~~~d~~Il~~vi~~~ 132 (143)
.+.+.|......+|++-++-.+..+.+-+-.+.|....+|-.++...-..-.+ +-+++-.+..+=.+|++++++++
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~ii 109 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAII 109 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999998888888888888888887776666555543333333 33333333344444444444433
Q ss_pred HHH
Q 032306 133 TFL 135 (143)
Q Consensus 133 i~~ 135 (143)
+++
T Consensus 110 i~i 112 (119)
T 2kog_A 110 LII 112 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 10
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=91.86 E-value=0.22 Score=26.60 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 032306 123 IILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~~~k 143 (143)
++++.++++.++.+++|||+|
T Consensus 12 IVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 12 IVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred EeHHHHHHHHHHHHHHhheec
Confidence 456667777778888888886
No 11
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=86.52 E-value=2.1 Score=25.67 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=42.9
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHH
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQIL 111 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll 111 (143)
+.|+.-+..+..+=++|..+-+++..|+..|..+..++-.+...+...++=+
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl 60 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV 60 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888899999999999999999999999888877666555443
No 12
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=86.18 E-value=3 Score=25.04 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=44.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHH
Q 032306 60 ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSS 113 (143)
Q Consensus 60 ~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~ 113 (143)
+.|..-...+..+-++|..+-.+|..|+..|..+..++-.+...+...++=+.+
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456677777888888999999999999999999999998888877766554443
No 13
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=85.16 E-value=2.5 Score=25.58 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=41.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHH
Q 032306 61 SINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQI 110 (143)
Q Consensus 61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~l 110 (143)
.|..-...+-.+-.+|.++-..+..|++.|..+..|+-.+...+..-+.=
T Consensus 11 nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~R 60 (64)
T 3b5n_D 11 NLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNR 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777888888999999999999999999999998887766555443
No 14
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=84.88 E-value=4 Score=25.67 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=50.3
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHHHHh
Q 032306 59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSIKRK 117 (143)
Q Consensus 59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I~rR 117 (143)
-+.|+.-...+..+=++|..|-++|..|+..|..+...+-.+...+...++=+..+.++
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888899999999999999999999999999999888887777666666554
No 15
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=84.61 E-value=2.6 Score=26.95 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=49.8
Q ss_pred HHHHHh-hHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHH
Q 032306 54 ALLKEH-ASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 114 (143)
Q Consensus 54 ~ll~e~-~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I 114 (143)
.+.+|. +.|+.-...+..+-++|..+-.+|..|+..|..+..++-.+...+...+.=+..+
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444443 5788888888999999999999999999999999999998888877766655544
No 16
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=82.42 E-value=2.6 Score=27.03 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=47.8
Q ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhccCchHHHHHHHH
Q 032306 59 HASINRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPSVNQILSSI 114 (143)
Q Consensus 59 ~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~~l~~s~~ll~~I 114 (143)
-+.|+.-...+..+-++|..+-.+|..|+..|..+..++-.+...+...+.=+..+
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888889999999999999999999999999999988888777655543
No 17
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=78.09 E-value=3.1 Score=28.28 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHHhhc---cCchHHHHHHHHHHhhhh
Q 032306 66 TGQMDSVISQAQATLGALVFQRSTFGGINSKLSNVSS---RLPSVNQILSSIKRKKSM 120 (143)
Q Consensus 66 ~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~~---~l~~s~~ll~~I~rR~~~ 120 (143)
...+..+-++-.++..-+.+.-+.+-.=..|+.++.+ .|.....-..+=.++.++
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~r 89 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 89 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444555544443 444445555543344333
No 18
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=74.60 E-value=0.51 Score=24.54 Aligned_cols=20 Identities=40% Similarity=0.908 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 032306 124 ILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~~~k 143 (143)
|++-+|..|++-++-||+++
T Consensus 7 iia~visGcivalF~hWL~~ 26 (30)
T 4b19_A 7 IIAPVISGCAIAFFSYWLSR 26 (30)
T ss_dssp STTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34556778988889999863
No 19
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=73.87 E-value=2.5 Score=23.85 Aligned_cols=10 Identities=0% Similarity=-0.154 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 032306 128 VASVCTFLIF 137 (143)
Q Consensus 128 vi~~~i~~~l 137 (143)
+.+++++.++
T Consensus 21 v~~~~ii~~~ 30 (44)
T 2ks1_B 21 LLLLLVVALG 30 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 20
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=71.15 E-value=4.9 Score=24.34 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 032306 123 IILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~~~k 143 (143)
+|++-+++...+.+..|+|+|
T Consensus 12 IIv~DIi~TllLal~VY~~A~ 32 (63)
T 2l35_A 12 IVVGDLVLTVLIALAVYFLGR 32 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhhcc
Confidence 566777777788888888876
No 21
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=68.99 E-value=3.9 Score=24.07 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=9.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHcC
Q 032306 123 IILALVAS-VCTFLIFIYWVTK 143 (143)
Q Consensus 123 ~Il~~vi~-~~i~~~l~y~~~k 143 (143)
+|+.++++ ++++.+++|.++|
T Consensus 14 iIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 14 WVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 5555555554443
No 22
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=68.41 E-value=4.1 Score=23.99 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=9.4
Q ss_pred HHHHHHHH-HHHHHHHHHHHc
Q 032306 123 IILALVAS-VCTFLIFIYWVT 142 (143)
Q Consensus 123 ~Il~~vi~-~~i~~~l~y~~~ 142 (143)
+|+.++++ ++++.+++|.++
T Consensus 11 iIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 11 VILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 445444555444
No 23
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=64.06 E-value=5.9 Score=22.03 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=9.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHc
Q 032306 123 IILALVAS-VCTFLIFIYWVT 142 (143)
Q Consensus 123 ~Il~~vi~-~~i~~~l~y~~~ 142 (143)
+|+.++++ ++++.++.|.++
T Consensus 12 iIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 12 WVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 555554555444
No 24
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=58.18 E-value=23 Score=20.72 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 032306 3 YVFNVQSLGTEFYRLRSSLKA-KQEHASL 30 (143)
Q Consensus 3 yr~~L~~~~~ef~r~~~~~~~-~~~R~~L 30 (143)
.++.++++++|+++++..+.+ .+.|.+|
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~L 43 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDL 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998754 2334444
No 25
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=56.39 E-value=13 Score=21.00 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032306 4 VFNVQSLGTEFYRLRSSLKA 23 (143)
Q Consensus 4 r~~L~~~~~ef~r~~~~~~~ 23 (143)
.|+|.+.++|+.+.|..+-.
T Consensus 14 qEIL~E~RkElqK~K~EIIe 33 (45)
T 1use_A 14 QELLEEVKKELQKVKEEIIE 33 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999998743
No 26
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=54.52 E-value=12 Score=19.01 Aligned_cols=18 Identities=33% Similarity=0.805 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYWV 141 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~~ 141 (143)
+++|.++++.++-+-+|+
T Consensus 8 viaglvalltflafgfwl 25 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555544444444
No 27
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=51.91 E-value=20 Score=19.57 Aligned_cols=11 Identities=27% Similarity=0.181 Sum_probs=6.4
Q ss_pred hHHHHHHHHHH
Q 032306 122 TIILALVASVC 132 (143)
Q Consensus 122 ~~Il~~vi~~~ 132 (143)
.+|+.+||+..
T Consensus 13 ~lII~~vmaGi 23 (40)
T 1afo_A 13 TLIIFGVMAGV 23 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35666677643
No 28
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=47.30 E-value=29 Score=19.61 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=13.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 032306 117 KKSMDTIILALVASVCTFLIFIY 139 (143)
Q Consensus 117 R~~~d~~Il~~vi~~~i~~~l~y 139 (143)
+.-++-++=.+.|.+|++++.++
T Consensus 26 qnlqelfvnfclilicllli~ii 48 (52)
T 1fjk_A 26 QNLQNLFINFCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556566677776665444
No 29
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=47.10 E-value=37 Score=21.35 Aligned_cols=32 Identities=9% Similarity=0.385 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 032306 109 QILSSIKRKKSMDTIILALVASVCTFLIFIYW 140 (143)
Q Consensus 109 ~ll~~I~rR~~~d~~Il~~vi~~~i~~~l~y~ 140 (143)
..++..-....|..++.|+-+++|++++++.|
T Consensus 9 ~~ld~~~~~~~~~~I~~G~~iGAs~llliil~ 40 (80)
T 2k9p_A 9 DELQGLVNSTVTQAILFGVRSGAAALTLIVVW 40 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777778888877886655554444
No 30
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=43.61 E-value=57 Score=20.24 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=14.2
Q ss_pred HHHHHHhhHHHhhHHHHHHHHHHHHHH
Q 032306 53 QALLKEHASINRSTGQMDSVISQAQAT 79 (143)
Q Consensus 53 ~~ll~e~~~L~~S~~~~d~~~~~g~~~ 79 (143)
+.||..+++|+++...+.+....+.++
T Consensus 5 ~~Ll~~t~~L~rt~~~L~~s~r~~~ET 31 (81)
T 2nps_C 5 AHLLDNTERLERSSRRLEAGYQIAVET 31 (81)
T ss_dssp THHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444
No 31
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=42.70 E-value=1.2e+02 Score=23.69 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 032306 7 VQSLGTEFYRLRSSL 21 (143)
Q Consensus 7 L~~~~~ef~r~~~~~ 21 (143)
+.+++++.-.++..+
T Consensus 223 l~~lrr~l~~lrr~l 237 (363)
T 2iub_A 223 THQLKRNLVELRKTI 237 (363)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 32
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.25 E-value=22 Score=22.22 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 032306 124 ILALVAS 130 (143)
Q Consensus 124 Il~~vi~ 130 (143)
|++|+++
T Consensus 13 Iv~gvi~ 19 (79)
T 2knc_B 13 VLLSVMG 19 (79)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333433
No 33
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=38.83 E-value=46 Score=17.90 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFI 138 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~ 138 (143)
|+.++.|+++.+.++++
T Consensus 5 Ki~Vy~vV~ffvsLFiF 21 (38)
T 3arc_I 5 KITVYIVVTFFVLLFVF 21 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeeehhHHHHHHHHHHc
Confidence 56777776655444444
No 34
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=38.26 E-value=27 Score=19.21 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 032306 124 ILALVAS 130 (143)
Q Consensus 124 Il~~vi~ 130 (143)
|++|+++
T Consensus 12 Iv~gvi~ 18 (43)
T 2k9j_B 12 VLLSVMG 18 (43)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4444444
No 35
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=36.14 E-value=40 Score=20.60 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIY 139 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y 139 (143)
+++|+.++++++.+++
T Consensus 13 vlGg~~~lll~~glcI 28 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGI 28 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4555555544444443
No 36
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=35.89 E-value=41 Score=18.60 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 032306 125 LALVASVCTFLIFIYW 140 (143)
Q Consensus 125 l~~vi~~~i~~~l~y~ 140 (143)
-++.++++++++++.+
T Consensus 25 k~gt~~~~~~ll~mai 40 (43)
T 1qle_D 25 TWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444443333434433
No 37
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=35.82 E-value=46 Score=19.09 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIYWV 141 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y~~ 141 (143)
..++.++++++++++.+|
T Consensus 32 ~k~gt~~~~~~ll~laif 49 (51)
T 1m56_D 32 VTWAAVVIVAALIFLALA 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444433333334333
No 38
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=32.75 E-value=33 Score=26.43 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~ 141 (143)
++=+.+++.+++++++.|++
T Consensus 229 ~lG~~vl~fL~il~~l~y~~ 248 (263)
T 2yiu_B 229 QVGFVSVIFLIVLAALLYLT 248 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555554
No 39
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=31.97 E-value=35 Score=26.05 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~ 141 (143)
++=+.+++++++++++.|++
T Consensus 207 ~~G~~vl~fL~il~~l~y~~ 226 (248)
T 3cx5_D 207 RLGLKTVIILSSLYLLSIWV 226 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555554
No 40
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=30.11 E-value=39 Score=25.64 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~ 141 (143)
++=+.+++.+++++++.|++
T Consensus 203 ~~G~~vl~fL~il~~l~y~~ 222 (241)
T 1pp9_D 203 RMGLKMLLMMGLLLPLVYAM 222 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334344455555555544
No 41
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=29.70 E-value=56 Score=16.05 Aligned_cols=8 Identities=25% Similarity=0.962 Sum_probs=3.6
Q ss_pred HHHHHHHc
Q 032306 135 LIFIYWVT 142 (143)
Q Consensus 135 ~~l~y~~~ 142 (143)
.+++.|++
T Consensus 19 VllylW~s 26 (26)
T 3j1r_A 19 VLLYTWVS 26 (26)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 33444553
No 42
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=28.89 E-value=42 Score=25.76 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLIFIYWV 141 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~~ 141 (143)
+=+.+++.+++++++.|++
T Consensus 227 ~G~~vl~fL~il~~l~y~~ 245 (258)
T 1zrt_D 227 MGLVAMVMLGLLSVMLYLT 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555544
No 43
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=28.36 E-value=43 Score=25.86 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLIFIYWV 141 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~~ 141 (143)
+=+.+++.+++++++.|++
T Consensus 229 lG~~Vl~fL~il~~l~y~~ 247 (269)
T 2qjy_B 229 AGFTAVMFLTVLSVLLYLT 247 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555554
No 44
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.41 E-value=52 Score=16.70 Aligned_cols=17 Identities=6% Similarity=0.161 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHH
Q 032306 120 MDTIILALVASVCTFLI 136 (143)
Q Consensus 120 ~d~~Il~~vi~~~i~~~ 136 (143)
|.-++=..++.+|++++
T Consensus 6 qELf~NFt~vLI~vlLi 22 (31)
T 1jdm_A 6 RELFLNFTIVLITVILM 22 (31)
T ss_dssp SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455566665553
No 45
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=27.27 E-value=27 Score=18.56 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 032306 123 IILALVA 129 (143)
Q Consensus 123 ~Il~~vi 129 (143)
.|.++++
T Consensus 14 ~I~~~vv 20 (41)
T 2k9y_A 14 AVIGGVA 20 (41)
T ss_dssp HHHHHHH
T ss_pred EEEeehh
Confidence 3343333
No 46
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=32.77 E-value=14 Score=20.23 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=2.4
Q ss_pred HHHHHH
Q 032306 136 IFIYWV 141 (143)
Q Consensus 136 ~l~y~~ 141 (143)
+++|.|
T Consensus 27 iLi~~w 32 (39)
T 2l6w_A 27 ILIMLW 32 (39)
Confidence 334433
No 47
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=26.42 E-value=1e+02 Score=19.74 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032306 56 LKEHASINRSTGQMDSVISQAQATLGALVFQRSTFG 91 (143)
Q Consensus 56 l~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~ 91 (143)
+.+.++|+..++++|++.. ..++++..=|+.+.
T Consensus 3 ~~Qe~aL~~vn~lID~~v~---k~~~D~~~ar~~c~ 35 (88)
T 3cqx_C 3 MGSEESLKHATRIIDEVVS---KFLDDLGNAKSHLM 35 (88)
T ss_dssp ----CHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHhCHHHHHHHHH
Confidence 3455788888888888764 34455555444443
No 48
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=25.32 E-value=1.3e+02 Score=18.88 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhHHHHhhHHhhHHHhh
Q 032306 72 VISQAQATLGALVFQRSTFGGINSKLSNVS 101 (143)
Q Consensus 72 ~~~~g~~~~~~L~~Qr~~l~~~~~kl~~~~ 101 (143)
+-++-.++..-+.+.=+.+-.=..|+.++.
T Consensus 10 vq~ev~evk~iM~~NI~kvL~RgekL~~L~ 39 (91)
T 3hd7_A 10 TQAQVDEVVDIMRVNVDKVLERDQKLSELD 39 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 333333344334333333333334443333
No 49
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=25.09 E-value=45 Score=16.80 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=8.1
Q ss_pred hHHHHHHHHHH
Q 032306 3 YVFNVQSLGTE 13 (143)
Q Consensus 3 yr~~L~~~~~e 13 (143)
|+.+|.++..+
T Consensus 16 YrkIlndls~~ 26 (28)
T 1kdx_B 16 YRKILNDLSSD 26 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhccC
Confidence 78888887654
No 50
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=24.95 E-value=37 Score=22.41 Aligned_cols=11 Identities=0% Similarity=-0.242 Sum_probs=2.9
Q ss_pred HHHHHHHHHHH
Q 032306 131 VCTFLIFIYWV 141 (143)
Q Consensus 131 ~~i~~~l~y~~ 141 (143)
+++++++.|++
T Consensus 69 ~~~~~~~~~~~ 79 (163)
T 2f95_B 69 GINLGLVAATL 79 (163)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 51
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=23.94 E-value=97 Score=17.16 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 032306 123 IILALVAS 130 (143)
Q Consensus 123 ~Il~~vi~ 130 (143)
.|.++|++
T Consensus 13 ~Ia~~vVG 20 (44)
T 2jwa_A 13 SIISAVVG 20 (44)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 35555555
No 52
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=23.82 E-value=1.5e+02 Score=19.13 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhH
Q 032306 67 GQMDSVISQAQATLGALVFQRSTFGGI 93 (143)
Q Consensus 67 ~~~d~~~~~g~~~~~~L~~Qr~~l~~~ 93 (143)
.++|.+......+.++...=...|+.+
T Consensus 49 e~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 49 EMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555443
No 53
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=22.32 E-value=87 Score=15.74 Aligned_cols=23 Identities=17% Similarity=0.155 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHH
Q 032306 117 KKSMDTIILALVASVCTFLIFIY 139 (143)
Q Consensus 117 R~~~d~~Il~~vi~~~i~~~l~y 139 (143)
+.-++-++=.+.|.+|.+++-+.
T Consensus 5 qNlQ~LfvNfcLilICllLi~Ii 27 (30)
T 1yod_A 5 QNLQNLYINRCLREICQELKEIR 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777765444
No 54
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=21.32 E-value=1.7e+02 Score=22.54 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=34.7
Q ss_pred HHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHH----HHhhHHhhHHHhhc
Q 032306 56 LKEHASINRSTGQMDSVISQAQATLGALVFQRS----TFGGINSKLSNVSS 102 (143)
Q Consensus 56 l~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~----~l~~~~~kl~~~~~ 102 (143)
.-.+..|-+..+++.++-..|.++..+|..+=. .+...+.|+..+..
T Consensus 28 ~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~ 78 (279)
T 3p8c_D 28 CVTNISLANIIRQLSSLSKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSV 78 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999998833 33444444444443
No 55
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=21.03 E-value=1.1e+02 Score=17.83 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHHHhhHHhhHH
Q 032306 77 QATLGALVFQRSTFGGINSKLS 98 (143)
Q Consensus 77 ~~~~~~L~~Qr~~l~~~~~kl~ 98 (143)
.+|.+.|..|...|...|+.|.
T Consensus 6 e~I~~El~kQe~lL~~LH~e~~ 27 (56)
T 2kwh_A 6 AGIKEEIRRQEFLLNSLHRDLQ 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999998885
No 56
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=20.68 E-value=95 Score=15.55 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 032306 125 LALVASVCTFLI 136 (143)
Q Consensus 125 l~~vi~~~i~~~ 136 (143)
++..+.++++++
T Consensus 8 ~~~~i~Flil~~ 19 (34)
T 1b9u_A 8 LGQAIAFVLFVL 19 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 57
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.30 E-value=2.1e+02 Score=20.67 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=31.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHhhHHH
Q 032306 63 NRSTGQMDSVISQAQATLGALVFQRSTFGGINSKLSN 99 (143)
Q Consensus 63 ~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~~~~~kl~~ 99 (143)
.+....+.++++-+.+...+|..+++.|+.-++||..
T Consensus 137 ~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 137 ENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999998875
Done!