Query 032306
Match_columns 143
No_of_seqs 123 out of 517
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 20:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 72.2 2.4 0.00018 20.1 3.1 16 124-139 4-19 (30)
2 d1xmec1 f.23.9.1 (C:2-34) Bact 70.1 2 0.00015 20.9 2.6 14 128-141 10-23 (33)
3 d1m56d_ f.23.8.1 (D:) Bacteria 52.2 9.6 0.0007 19.8 3.4 19 123-141 22-40 (42)
4 d1qled_ f.23.8.1 (D:) Bacteria 48.1 10 0.00073 19.8 3.1 19 123-141 23-41 (43)
5 d2axti1 f.23.37.1 (I:1-35) Pho 47.1 14 0.001 18.2 3.4 20 122-141 5-24 (35)
6 d1v54d_ f.23.1.1 (D:) Mitochon 29.5 24 0.0017 23.1 3.4 18 122-139 76-93 (144)
7 d1yf2a1 d.287.1.2 (A:1-220) Bi 20.4 99 0.0072 19.7 5.5 36 56-91 168-203 (220)
8 d2f66c1 a.2.17.3 (C:142-206) V 18.2 68 0.005 17.7 3.3 31 61-91 32-62 (65)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 17.8 41 0.003 23.6 2.9 24 120-143 25-48 (248)
10 d1v54j_ f.23.4.1 (J:) Mitochon 16.9 76 0.0056 17.3 3.3 22 121-142 28-49 (58)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=72.19 E-value=2.4 Score=20.12 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 032306 124 ILALVASVCTFLIFIY 139 (143)
Q Consensus 124 Il~~vi~~~i~~~l~y 139 (143)
|-++.|..|++.++++
T Consensus 4 i~yv~ifac~i~lfff 19 (30)
T d2axtt1 4 ITYVFIFACIIALFFF 19 (30)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHH
Confidence 4566666776655444
No 2
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=70.14 E-value=2 Score=20.93 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 032306 128 VASVCTFLIFIYWV 141 (143)
Q Consensus 128 vi~~~i~~~l~y~~ 141 (143)
||+++.+.++.+||
T Consensus 10 vi~il~l~ilvfw~ 23 (33)
T d1xmec1 10 VILVLTLTILVFWL 23 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444445554
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=52.19 E-value=9.6 Score=19.80 Aligned_cols=19 Identities=16% Similarity=0.266 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLIFIYWV 141 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~~ 141 (143)
+..++.|+++++++++.+|
T Consensus 22 ~~t~~~i~~i~~liflAi~ 40 (42)
T d1m56d_ 22 MVTWAAVVIVAALIFLALA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555544
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=48.06 E-value=10 Score=19.83 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032306 123 IILALVASVCTFLIFIYWV 141 (143)
Q Consensus 123 ~Il~~vi~~~i~~~l~y~~ 141 (143)
+..++.|+++++++++.+|
T Consensus 23 ~~t~~~i~~i~~liflAi~ 41 (43)
T d1qled_ 23 GATWVSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444455544455455444
No 5
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=47.12 E-value=14 Score=18.21 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFIYWV 141 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y~~ 141 (143)
|+.+|.|+++.+.++++=++
T Consensus 5 Ki~Vy~vV~fFv~lFiFGFL 24 (35)
T d2axti1 5 KITVYIVVTFFVLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEehhhHHHHHHHHHHHhhc
Confidence 56777776655444444333
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=29.55 E-value=24 Score=23.09 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 032306 122 TIILALVASVCTFLIFIY 139 (143)
Q Consensus 122 ~~Il~~vi~~~i~~~l~y 139 (143)
+.|+++++++|.+-++++
T Consensus 76 K~v~g~~~~~i~~s~~i~ 93 (144)
T d1v54d_ 76 KTVVGAAMFFIGFTALLL 93 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 666776655444433333
No 7
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=20.40 E-value=99 Score=19.65 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=27.1
Q ss_pred HHHhhHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032306 56 LKEHASINRSTGQMDSVISQAQATLGALVFQRSTFG 91 (143)
Q Consensus 56 l~e~~~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~ 91 (143)
+.|+..+.+--..+++.++.-...++.|..+|..|-
T Consensus 168 ~~eQ~~I~~~l~~i~~~i~~~~~~i~~L~~~r~~ll 203 (220)
T d1yf2a1 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLM 203 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777788888888888888887776653
No 8
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.22 E-value=68 Score=17.73 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=23.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 032306 61 SINRSTGQMDSVISQAQATLGALVFQRSTFG 91 (143)
Q Consensus 61 ~L~~S~~~~d~~~~~g~~~~~~L~~Qr~~l~ 91 (143)
+...+..-+|..+.+=..++..-.-||+.|.
T Consensus 32 r~~~~s~elD~Fi~qYl~~RTeYH~rREKLa 62 (65)
T d2f66c1 32 RSIDSADDLDQFIKNYLDIRTQYHLRREKLA 62 (65)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455678888888889998888988874
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=17.75 E-value=41 Score=23.64 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcC
Q 032306 120 MDTIILALVASVCTFLIFIYWVTK 143 (143)
Q Consensus 120 ~d~~Il~~vi~~~i~~~l~y~~~k 143 (143)
+..|++++++++.++++.+.+++|
T Consensus 25 ~~~~~~a~~~~~~~~~~~~vy~s~ 48 (248)
T d2r6gf1 25 QGEYLFAITTLILSSAGLYIFANR 48 (248)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHSSS
T ss_pred cchHHHHHHHHHHHHheEEEEEcc
No 10
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.85 E-value=76 Score=17.25 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHc
Q 032306 121 DTIILALVASVCTFLIFIYWVT 142 (143)
Q Consensus 121 d~~Il~~vi~~~i~~~l~y~~~ 142 (143)
|+++....+++|+..+.+-.|+
T Consensus 28 D~~LYr~Tm~L~~~G~~~s~~~ 49 (58)
T d1v54j_ 28 DNILYRVTMTLCLGGTLYSLYC 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Done!