Query 032308
Match_columns 143
No_of_seqs 125 out of 936
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 100.0 3.3E-35 7.2E-40 215.5 12.8 119 12-142 5-125 (125)
2 PLN00193 expansin-A; Provision 100.0 2.3E-31 5.1E-36 215.1 14.7 119 24-143 26-156 (256)
3 PLN00050 expansin A; Provision 100.0 1E-30 2.2E-35 210.6 11.7 114 26-143 23-148 (247)
4 PLN03023 Expansin-like B1; Pro 100.0 3E-30 6.4E-35 207.8 12.8 107 24-143 21-139 (247)
5 smart00837 DPBB_1 Rare lipopro 99.9 1.8E-26 4E-31 159.7 7.3 80 59-140 1-87 (87)
6 PF03330 DPBB_1: Rare lipoprot 99.9 1.1E-22 2.4E-27 137.1 6.2 76 59-140 1-78 (78)
7 COG4305 Endoglucanase C-termin 99.4 8.4E-13 1.8E-17 101.9 8.3 95 29-143 31-130 (232)
8 TIGR00413 rlpA rare lipoprotei 99.2 8.8E-11 1.9E-15 92.6 10.9 90 31-143 1-91 (208)
9 COG0797 RlpA Lipoproteins [Cel 99.2 9.3E-11 2E-15 93.8 10.6 96 25-143 79-175 (233)
10 PF00967 Barwin: Barwin family 99.2 4.7E-11 1E-15 86.0 5.0 59 68-143 55-117 (119)
11 PRK10672 rare lipoprotein A; P 99.0 5.3E-09 1.2E-13 88.5 11.7 90 30-142 80-170 (361)
12 PF07249 Cerato-platanin: Cera 98.7 1.1E-07 2.3E-12 69.4 8.8 71 52-143 38-112 (119)
13 PF02015 Glyco_hydro_45: Glyco 96.0 0.013 2.9E-07 46.3 5.0 54 59-123 70-123 (201)
14 PRK15262 putative fimbrial pro 80.0 2.4 5.1E-05 33.1 3.5 39 6-45 3-41 (197)
15 PF15240 Pro-rich: Proline-ric 72.3 2.5 5.3E-05 33.0 1.7 27 10-37 1-27 (179)
16 PF10717 ODV-E18: Occlusion-de 55.0 20 0.00044 24.6 3.4 27 6-32 28-54 (85)
17 PRK13159 cytochrome c-type bio 51.9 14 0.0003 28.2 2.5 37 2-38 3-39 (155)
18 PRK13150 cytochrome c-type bio 48.3 14 0.0003 28.3 2.0 36 2-37 3-38 (159)
19 PRK11657 dsbG disulfide isomer 45.3 38 0.00082 27.2 4.2 36 93-142 117-154 (251)
20 PF03100 CcmE: CcmE; InterPro 43.9 4.6 0.0001 29.5 -1.2 37 1-37 1-37 (131)
21 PF07584 BatA: Aerotolerance r 40.2 39 0.00084 22.0 3.0 24 3-26 52-75 (77)
22 PF10913 DUF2706: Protein of u 39.4 41 0.00088 21.3 2.8 19 6-24 2-20 (60)
23 PF13670 PepSY_2: Peptidase pr 39.3 27 0.00059 23.0 2.2 21 73-100 52-72 (83)
24 PRK13254 cytochrome c-type bio 37.1 19 0.00041 27.1 1.2 37 2-38 3-39 (148)
25 PF05324 Sperm_Ag_HE2: Sperm a 36.0 30 0.00065 23.1 1.9 22 7-28 3-24 (73)
26 cd03020 DsbA_DsbC_DsbG DsbA fa 32.8 1.1E+02 0.0023 23.2 4.8 15 93-107 77-92 (197)
27 PF13623 SurA_N_2: SurA N-term 32.8 34 0.00073 25.5 2.0 19 2-20 1-19 (145)
28 PTZ00257 Glycoprotein GP63 (le 32.2 42 0.00092 31.0 2.9 38 74-127 507-551 (622)
29 PF12071 DUF3551: Protein of u 31.2 1.2E+02 0.0026 20.5 4.3 6 42-47 42-48 (82)
30 PRK02710 plastocyanin; Provisi 30.9 70 0.0015 22.6 3.3 16 1-16 1-16 (119)
31 PRK13165 cytochrome c-type bio 29.5 36 0.00078 26.1 1.7 36 2-37 3-38 (160)
32 PF08664 YcbB: YcbB domain; I 28.1 37 0.00079 25.2 1.5 12 1-12 67-78 (134)
33 PF04202 Mfp-3: Foot protein 3 27.4 51 0.0011 21.8 1.9 9 33-41 25-33 (71)
34 PF08194 DIM: DIM protein; In 26.9 73 0.0016 18.5 2.3 14 22-35 15-28 (36)
35 PF04149 DUF397: Domain of unk 25.9 1.7E+02 0.0037 18.1 5.3 36 74-129 15-51 (56)
36 PRK10095 ribonuclease I; Provi 25.7 59 0.0013 26.8 2.4 41 1-45 1-48 (268)
37 PF07803 GSG-1: GSG1-like prot 25.5 89 0.0019 22.8 3.0 20 1-20 2-21 (118)
38 PHA02945 interferon resistance 25.3 87 0.0019 21.7 2.8 21 93-121 60-80 (88)
39 PF08525 OapA_N: Opacity-assoc 25.2 1E+02 0.0022 16.8 2.6 15 6-20 11-25 (30)
40 PF07610 DUF1573: Protein of u 25.2 84 0.0018 18.4 2.4 36 96-140 10-45 (45)
41 PRK15260 fimbrial protein SteF 25.1 77 0.0017 24.2 2.8 40 4-45 3-42 (178)
42 PRK09474 malE maltose ABC tran 25.0 1.2E+02 0.0025 25.0 4.1 35 4-38 2-38 (396)
43 PRK11901 hypothetical protein; 25.0 63 0.0014 27.6 2.5 25 5-29 34-58 (327)
44 PF04535 DUF588: Domain of unk 24.3 1.4E+02 0.0031 21.7 4.1 37 1-37 5-45 (149)
45 COG1930 CbiN ABC-type cobalt t 23.6 1.1E+02 0.0024 21.5 3.1 29 9-40 7-35 (97)
46 PRK10081 entericidin B membran 23.2 1.2E+02 0.0025 18.8 2.8 17 6-22 3-19 (48)
47 PF13624 SurA_N_3: SurA N-term 22.7 28 0.00061 25.0 0.0 16 1-16 1-16 (154)
48 PF05887 Trypan_PARP: Procycli 22.3 29 0.00064 26.0 0.0 19 7-25 4-22 (143)
49 PRK15216 putative fimbrial bio 21.6 1.8E+02 0.0039 24.9 4.5 51 12-62 4-75 (340)
50 cd00927 Cyt_c_Oxidase_VIc Cyto 21.5 1.4E+02 0.0031 19.7 3.2 18 2-19 12-29 (70)
51 PF01623 Carla_C4: Carlavirus 20.9 40 0.00086 23.6 0.4 10 71-80 54-63 (91)
52 PRK10877 protein disulfide iso 20.8 1.4E+02 0.003 23.7 3.6 16 92-107 106-122 (232)
53 PF13453 zf-TFIIB: Transcripti 20.6 1.6E+02 0.0034 16.8 3.0 23 99-129 17-39 (41)
54 PF13462 Thioredoxin_4: Thiore 20.3 53 0.0011 23.3 1.0 41 93-143 12-54 (162)
55 COG3838 VirB2 Type IV secretor 20.1 1.1E+02 0.0024 22.0 2.6 28 1-28 4-31 (108)
56 TIGR02645 ARCH_P_rylase putati 20.1 3.5E+02 0.0076 24.4 6.3 51 73-139 29-79 (493)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=100.00 E-value=3.3e-35 Score=215.50 Aligned_cols=119 Identities=29% Similarity=0.613 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhhccCCceeeEEEeCCCCCCCCcccCCCCCCCCCCeEEEeCCCCCCCCcccCCeEEEEeccCC--CCCc
Q 032308 12 LSFLLFISQLICNTSFADVGTAARYGPPFLPTTCYGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISAS--EPGT 89 (143)
Q Consensus 12 ~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~GaC~g~~~~~~p~~~~iaA~s~~~~~~g~~CG~c~~V~c~~~~--~~~~ 89 (143)
+||++.+++.+.+++.++.|+||||++ +.+|+||++. +.+.++||+|+.+|++|+.||+||||+|.+.. .+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~G~AT~Y~~-~~~gAC~~~~----~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~ 79 (125)
T PLN03024 5 ILIFSTVLVFLFSVSYATPGIATFYTS-YTPSACYRGT----SFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHP 79 (125)
T ss_pred eHHHHHHHHHHhhhhcccceEEEEeCC-CCCccccCCC----CCCCEeEEeCHHHcCCCcccCceEEEEECCCCcccccc
Confidence 456666777888999999999999996 5779997663 36899999999999999999999999997532 1347
Q ss_pred cCCCCeEEEEEeecCCCCCCCCCCCCceEEeCHHHHHHhhcCCCceEEEEEEE
Q 032308 90 CEPEQTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANSTATLINVEFQQ 142 (143)
Q Consensus 90 C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~V~w~~ 142 (143)
|. +++|+|+|+|+||++ +++|||||++||++||+++.|+|+|+|++
T Consensus 80 c~-gksV~V~VtD~CP~~------C~~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 80 CT-GKSVTVKIVDHCPSG------CASTLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cc-CCeEEEEEEcCCCCC------CCCceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 86 789999999999952 23699999999999999999999999985
No 2
>PLN00193 expansin-A; Provisional
Probab=99.97 E-value=2.3e-31 Score=215.11 Aligned_cols=119 Identities=22% Similarity=0.330 Sum_probs=99.1
Q ss_pred hccCCceeeEEEeCCCC----CCCCc-ccCCCCCCCCCCeEEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEE
Q 032308 24 NTSFADVGTAARYGPPF----LPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQI 98 (143)
Q Consensus 24 ~~a~~~~G~aT~Y~~~~----~~GaC-~g~~~~~~p~~~~iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V 98 (143)
+.+.+..|+||||+.++ ..||| ||+.. ..+++.++||+|+.+|++|+.||+||||+|....++.+|.++++|+|
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~-~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~V 104 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLY-STGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTI 104 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCCcc-ccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEE
Confidence 33467899999999643 36899 99854 45678899999999999999999999999964345778986779999
Q ss_pred EEeecCCCCCCCC-------CCCCceEEeCHHHHHHhhcCCCceEEEEEEEC
Q 032308 99 RIVDYALQLESTP-------SVSGTTIVLSETAFRTIANSTATLINVEFQQV 143 (143)
Q Consensus 99 ~V~D~Cp~c~~~~-------~~~~~~lDLS~~AF~~ia~~~~G~i~V~w~~V 143 (143)
+|||+||..+..| +.+..|||||++||.+||....|+|+|+||||
T Consensus 105 t~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRV 156 (256)
T PLN00193 105 TATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRV 156 (256)
T ss_pred EEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEe
Confidence 9999999753222 12458999999999999999999999999997
No 3
>PLN00050 expansin A; Provisional
Probab=99.97 E-value=1e-30 Score=210.59 Aligned_cols=114 Identities=25% Similarity=0.405 Sum_probs=95.7
Q ss_pred cCCceeeEEEeCCCC----CCCCc-ccCCCCCCCCCCeEEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEEEE
Q 032308 26 SFADVGTAARYGPPF----LPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRI 100 (143)
Q Consensus 26 a~~~~G~aT~Y~~~~----~~GaC-~g~~~~~~p~~~~iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V 100 (143)
..|..++||||+.++ ..||| ||+... .+.+.++||+|+.+|++|..||+||||+|.+ .+.+|.+ ++|+|+|
T Consensus 23 ~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~-~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~--~~~~C~~-gsV~V~i 98 (247)
T PLN00050 23 SGWTGAHATFYGGGDASGTMGGACGYGNLYS-QGYGTNTAALSTALFNNGLSCGACFEIKCVN--DNIWCLP-GSIIITA 98 (247)
T ss_pred CCccccEEEEcCCCCCCCCCCcccCCCCccc-cCCCceeeeccHhHccCCccccceEEEEcCC--CCcccCC-CcEEEEE
Confidence 468899999999653 36899 998543 4678899999999999999999999999976 4557984 5899999
Q ss_pred eecCCCCCCCC-------CCCCceEEeCHHHHHHhhcCCCceEEEEEEEC
Q 032308 101 VDYALQLESTP-------SVSGTTIVLSETAFRTIANSTATLINVEFQQV 143 (143)
Q Consensus 101 ~D~Cp~c~~~~-------~~~~~~lDLS~~AF~~ia~~~~G~i~V~w~~V 143 (143)
||+||+.+..| ..+..|||||++||.+||....|+|+|+||||
T Consensus 99 td~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRV 148 (247)
T PLN00050 99 TNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRV 148 (247)
T ss_pred ecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEe
Confidence 99999743222 12458999999999999999999999999997
No 4
>PLN03023 Expansin-like B1; Provisional
Probab=99.97 E-value=3e-30 Score=207.77 Aligned_cols=107 Identities=24% Similarity=0.529 Sum_probs=91.4
Q ss_pred hccCCceeeEEEeCCCC----CCCCc-ccCCCCCCCCCCeEEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEE
Q 032308 24 NTSFADVGTAARYGPPF----LPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQI 98 (143)
Q Consensus 24 ~~a~~~~G~aT~Y~~~~----~~GaC-~g~~~~~~p~~~~iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V 98 (143)
....+..++||||++++ ..||| ||+... ..++.++||++ .+|++|..||+||||+|. .+.+|. +++|+|
T Consensus 21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~-~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~---~~~~C~-~~~v~V 94 (247)
T PLN03023 21 KSQDFTYSRATYYGSPDCLGTPTGACGFGEYGR-TVNGGNVAGVS-RLYRNGTGCGACYQVRCK---APNLCS-DDGVNV 94 (247)
T ss_pred hcCCcccceEEEeCCCCCCCCCCccccCCcccc-CCCcceeeeeh-hhhcCCchhcccEEeecC---CCCccC-CCCeEE
Confidence 44457799999999875 46899 998543 33467899998 999999999999999997 477998 468999
Q ss_pred EEeecCCCCCCCCCCCCceEEeCHHHHHHhhcC-------CCceEEEEEEEC
Q 032308 99 RIVDYALQLESTPSVSGTTIVLSETAFRTIANS-------TATLINVEFQQV 143 (143)
Q Consensus 99 ~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~-------~~G~i~V~w~~V 143 (143)
+|||.||. +..|||||.+||.+||.+ ..|+|+|+||||
T Consensus 95 ~iTd~~~~-------~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRV 139 (247)
T PLN03023 95 VVTDYGEG-------DKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRI 139 (247)
T ss_pred EEEeCCCC-------CCCccccCHHHHHHHhCccccchhccCcEEEeEEEEE
Confidence 99999985 478999999999999995 469999999997
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.93 E-value=1.8e-26 Score=159.71 Aligned_cols=80 Identities=28% Similarity=0.531 Sum_probs=69.4
Q ss_pred EEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEEEEeecCCCCCCCCC-------CCCceEEeCHHHHHHhhcC
Q 032308 59 FAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPS-------VSGTTIVLSETAFRTIANS 131 (143)
Q Consensus 59 iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~-------~~~~~lDLS~~AF~~ia~~ 131 (143)
+||+|+.+|++|..||+||||+|.+ +|.+|.++++|+|+|||+||.+++.+. .+..|||||++||.+||+.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~--~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~ 78 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVD--SPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQY 78 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCC--CCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhh
Confidence 4799999999999999999999975 567898777999999999998643221 1358999999999999999
Q ss_pred CCceEEEEE
Q 032308 132 TATLINVEF 140 (143)
Q Consensus 132 ~~G~i~V~w 140 (143)
+.|+|+|+|
T Consensus 79 ~~Gvi~v~y 87 (87)
T smart00837 79 KAGIVPVKY 87 (87)
T ss_pred cCCEEeeEC
Confidence 999999997
No 6
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.87 E-value=1.1e-22 Score=137.09 Aligned_cols=76 Identities=33% Similarity=0.629 Sum_probs=61.2
Q ss_pred EEEeCCCCCCCCcccCCeEEEEeccCCCC-CccCCC-CeEEEEEeecCCCCCCCCCCCCceEEeCHHHHHHhhcCCCceE
Q 032308 59 FAAAGDGIWDNGASCGRQYLVRCISASEP-GTCEPE-QTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANSTATLI 136 (143)
Q Consensus 59 iaA~s~~~~~~g~~CG~c~~V~c~~~~~~-~~C~~g-~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i 136 (143)
.||++..+|++|..||+||+++|.....+ +.|+.+ ++|+|+|+|+||+| +.+|||||+.||++|++++.|+|
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~------~~~~lDLS~~aF~~la~~~~G~i 74 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGC------PPNHLDLSPAAFKALADPDAGVI 74 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTS------SSSEEEEEHHHHHHTBSTTCSSE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCC------cCCEEEeCHHHHHHhCCCCceEE
Confidence 48999999999999999999999433211 127632 99999999999997 68999999999999999999999
Q ss_pred EEEE
Q 032308 137 NVEF 140 (143)
Q Consensus 137 ~V~w 140 (143)
+|+|
T Consensus 75 ~V~w 78 (78)
T PF03330_consen 75 PVEW 78 (78)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9999
No 7
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.41 E-value=8.4e-13 Score=101.89 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=79.6
Q ss_pred ceeeEEEeCCCCCCCCc-ccCCCCCCCCCCeEEEeCCCCCCCC----cccCCeEEEEeccCCCCCccCCCCeEEEEEeec
Q 032308 29 DVGTAARYGPPFLPTTC-YGNDPTQFPSSNLFAAAGDGIWDNG----ASCGRQYLVRCISASEPGTCEPEQTIQIRIVDY 103 (143)
Q Consensus 29 ~~G~aT~Y~~~~~~GaC-~g~~~~~~p~~~~iaA~s~~~~~~g----~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~ 103 (143)
+.|-|||-+..|.+|+= -. +.|.+.-|.|+|+.+-|-| +.-|+.+||. +| .++.+|.|+|+
T Consensus 31 f~G~ATyTgsGYsGGAflLD----PI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq-----GP-----KG~TTVYVTDl 96 (232)
T COG4305 31 FEGYATYTGSGYSGGAFLLD----PIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ-----GP-----KGKTTVYVTDL 96 (232)
T ss_pred cceeEEEecccccCceEEec----CcCCcceeeecCHHHcccCCchhhhccceEEEE-----CC-----CCceEEEEecc
Confidence 36889987767777766 33 3456678999999988876 6789999998 55 46789999999
Q ss_pred CCCCCCCCCCCCceEEeCHHHHHHhhcCCCceEEEEEEEC
Q 032308 104 ALQLESTPSVSGTTIVLSETAFRTIANSTATLINVEFQQV 143 (143)
Q Consensus 104 Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~V~w~~V 143 (143)
-|+. ..+.|||||.||.+|++...|+|+|+||.|
T Consensus 97 YPeg------asGaLDLSpNAFakIGnm~qGrIpvqWrvv 130 (232)
T COG4305 97 YPEG------ASGALDLSPNAFAKIGNMKQGRIPVQWRVV 130 (232)
T ss_pred cccc------cccccccChHHHhhhcchhcCccceeEEEe
Confidence 9995 678999999999999999999999999976
No 8
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=99.24 E-value=8.8e-11 Score=92.56 Aligned_cols=90 Identities=23% Similarity=0.243 Sum_probs=72.8
Q ss_pred eeEEEeCCCCCCCCc-ccCCCCCCCCCCeEEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEEEEeecCCCCCC
Q 032308 31 GTAARYGPPFLPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLES 109 (143)
Q Consensus 31 G~aT~Y~~~~~~GaC-~g~~~~~~p~~~~iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~ 109 (143)
|.|+||++..++..- .|.. |....+.||..+-.+ |..++|+... ||++|+|+|.|++|.-
T Consensus 1 G~ASwYg~~f~G~~TAnGe~---y~~~~~tAAHktLPl------gT~V~VtNl~--------ngrsviVrVnDRGPf~-- 61 (208)
T TIGR00413 1 GLASWYGPKFHGRKTANGEV---YNMKALTAAHKTLPF------NTYVKVTNLH--------NNRSVIVRINDRGPFS-- 61 (208)
T ss_pred CEEeEeCCCCCCCcCCCCee---cCCCccccccccCCC------CCEEEEEECC--------CCCEEEEEEeCCCCCC--
Confidence 789999986654333 3543 334578888887766 8999999763 6899999999999984
Q ss_pred CCCCCCceEEeCHHHHHHhhcCCCceEEEEEEEC
Q 032308 110 TPSVSGTTIVLSETAFRTIANSTATLINVEFQQV 143 (143)
Q Consensus 110 ~~~~~~~~lDLS~~AF~~ia~~~~G~i~V~w~~V 143 (143)
++..||||+.|+++|+-...|+.+|+.+.+
T Consensus 62 ----~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl 91 (208)
T TIGR00413 62 ----DDRIIDLSHAAAREIGLISRGVGQVRIEVL 91 (208)
T ss_pred ----CCCEEECCHHHHHHcCCCcCceEEEEEEEE
Confidence 678999999999999999999999988753
No 9
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=9.3e-11 Score=93.80 Aligned_cols=96 Identities=24% Similarity=0.275 Sum_probs=77.2
Q ss_pred ccCCceeeEEEeCCCCCCCCc-ccCCCCCCCCCCeEEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEEEEeec
Q 032308 25 TSFADVGTAARYGPPFLPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDY 103 (143)
Q Consensus 25 ~a~~~~G~aT~Y~~~~~~GaC-~g~~~~~~p~~~~iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~ 103 (143)
......|.|+||+...++--- .|+. +....+.||..+-.| |...+|++.+ ||++|+|+|.|+
T Consensus 79 ~~~~~~G~ASwYg~~fhgr~TA~Ge~---~n~~~~tAAH~TLP~------~t~v~VtNl~--------NgrsvvVRINDR 141 (233)
T COG0797 79 ASFEQVGYASWYGEKFHGRKTANGER---YDMNALTAAHKTLPL------PTYVRVTNLD--------NGRSVVVRINDR 141 (233)
T ss_pred ccccccceeeeeccccCCccccCccc---ccccccccccccCCC------CCEEEEEEcc--------CCcEEEEEEeCC
Confidence 344467999999976554333 4443 334678899988888 7899999874 689999999999
Q ss_pred CCCCCCCCCCCCceEEeCHHHHHHhhcCCCceEEEEEEEC
Q 032308 104 ALQLESTPSVSGTTIVLSETAFRTIANSTATLINVEFQQV 143 (143)
Q Consensus 104 Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~V~w~~V 143 (143)
+|.- ++..||||..|+++|+....|+.+|+.+.+
T Consensus 142 GPf~------~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l 175 (233)
T COG0797 142 GPFV------SGRIIDLSKAAADKLGMIRSGVAKVRIEVL 175 (233)
T ss_pred CCCC------CCcEeEcCHHHHHHhCCccCceEEEEEEEe
Confidence 9984 678999999999999999999988887754
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.16 E-value=4.7e-11 Score=86.04 Aligned_cols=59 Identities=24% Similarity=0.331 Sum_probs=43.4
Q ss_pred CCCcccCCeEEEEeccCCCCCccCCCCeEEEEEeecCCCCCCCCCCCCceEEeCHHHHHHhhcCC----CceEEEEEEEC
Q 032308 68 DNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANST----ATLINVEFQQV 143 (143)
Q Consensus 68 ~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~----~G~i~V~w~~V 143 (143)
.+.+.||+|++||... +|++++|+|||+|+.+ .|||.+.+|.+|-... .|.+.|+|+.|
T Consensus 55 ~gq~~CGkClrVTNt~--------tga~~~~RIVDqCsnG---------GLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV 117 (119)
T PF00967_consen 55 MGQDSCGKCLRVTNTA--------TGAQVTVRIVDQCSNG---------GLDLDPTVFNQIDTDGQGYAQGHLIVDYEFV 117 (119)
T ss_dssp -SGGGTT-EEEEE-TT--------T--EEEEEEEEE-SSS---------SEES-SSSHHHH-SSSHHHHHTEEEEEEEEE
T ss_pred cCcccccceEEEEecC--------CCcEEEEEEEEcCCCC---------CcccChhHHhhhccCCcccccceEEEEEEEE
Confidence 4558999999999653 4789999999999863 7999999999996543 68999999986
No 11
>PRK10672 rare lipoprotein A; Provisional
Probab=99.00 E-value=5.3e-09 Score=88.46 Aligned_cols=90 Identities=23% Similarity=0.160 Sum_probs=72.3
Q ss_pred eeeEEEeCCCCCCCCc-ccCCCCCCCCCCeEEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEEEEeecCCCCC
Q 032308 30 VGTAARYGPPFLPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLE 108 (143)
Q Consensus 30 ~G~aT~Y~~~~~~GaC-~g~~~~~~p~~~~iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~ 108 (143)
.|.|+||+..+++..- .|+. |....+.||..+-.+ |..++|++.. ||++|+|+|.|++|.-
T Consensus 80 ~G~ASwYg~~f~G~~TA~Ge~---~~~~~~tAAH~tLPl------ps~vrVtNl~--------ngrsvvVrVnDRGP~~- 141 (361)
T PRK10672 80 AGLAAIYDAEAGSNLTASGER---FDPNALTAAHPTLPI------PSYVRVTNLA--------NGRMIVVRINDRGPYG- 141 (361)
T ss_pred EEEEEEeCCccCCCcCcCcee---ecCCcCeeeccCCCC------CCEEEEEECC--------CCcEEEEEEeCCCCCC-
Confidence 5889999976554444 4543 334578888888777 8999999774 6899999999999984
Q ss_pred CCCCCCCceEEeCHHHHHHhhcCCCceEEEEEEE
Q 032308 109 STPSVSGTTIVLSETAFRTIANSTATLINVEFQQ 142 (143)
Q Consensus 109 ~~~~~~~~~lDLS~~AF~~ia~~~~G~i~V~w~~ 142 (143)
.+.-||||+.|+++|+-...+.+.|+.-.
T Consensus 142 -----~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~ 170 (361)
T PRK10672 142 -----PGRVIDLSRAAADRLNTSNNTKVRIDPII 170 (361)
T ss_pred -----CCCeeEcCHHHHHHhCCCCCceEEEEEEe
Confidence 67899999999999998888888887653
No 12
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.72 E-value=1.1e-07 Score=69.44 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=51.1
Q ss_pred CCCCCCeEEEeCCC-CCCCCcccCCeEEEEeccCCCCCccCCCCeEEEEEeecCCCCCCCCCCCCceEEeCHHHHHHhhc
Q 032308 52 QFPSSNLFAAAGDG-IWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIAN 130 (143)
Q Consensus 52 ~~p~~~~iaA~s~~-~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~ 130 (143)
+.|.--+|.+.+.- -| |...||.|+||+. ++++|.|..+|.=++ .|+||++||+.|.+
T Consensus 38 ~lp~Fp~IGg~~~V~gW-nS~~CGtC~~lty----------~g~si~vlaID~a~~----------gfnis~~A~n~LT~ 96 (119)
T PF07249_consen 38 SLPNFPYIGGAPAVAGW-NSPNCGTCWKLTY----------NGRSIYVLAIDHAGG----------GFNISLDAMNDLTN 96 (119)
T ss_dssp CSTTTTSEEEETT--ST-T-TTTT-EEEEEE----------TTEEEEEEEEEE-SS----------SEEE-HHHHHHHHT
T ss_pred hcCCCCeeccccccccC-CCCCCCCeEEEEE----------CCeEEEEEEEecCCC----------cccchHHHHHHhcC
Confidence 34444567777764 46 4588999999995 378999999998543 49999999999987
Q ss_pred C---CCceEEEEEEEC
Q 032308 131 S---TATLINVEFQQV 143 (143)
Q Consensus 131 ~---~~G~i~V~w~~V 143 (143)
. ..|+|+++|++|
T Consensus 97 g~a~~lG~V~a~~~qV 112 (119)
T PF07249_consen 97 GQAVELGRVDATYTQV 112 (119)
T ss_dssp S-CCCC-EEE-EEEEE
T ss_pred CcccceeEEEEEEEEc
Confidence 3 479999999987
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=96.02 E-value=0.013 Score=46.26 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=33.6
Q ss_pred EEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEEEEeecCCCCCCCCCCCCceEEeCHH
Q 032308 59 FAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLSET 123 (143)
Q Consensus 59 iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~ 123 (143)
+||.+-.-......|++||+++-+++. -.||+.+|+|++.--+- ..+||||.-+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~-----l~GKkmiVQ~tNtG~dl------g~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGP-----LKGKKMIVQVTNTGGDL------GSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SST-----TTT-EEEEEEEEE-TTT------TTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCC-----cCCCEeEEEecccCCCC------CCCeEEEEeC
Confidence 566653322334789999999987632 23899999999988663 4689999754
No 14
>PRK15262 putative fimbrial protein StaF; Provisional
Probab=79.97 E-value=2.4 Score=33.12 Aligned_cols=39 Identities=10% Similarity=0.087 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCceeeEEEeCCCCCCCCc
Q 032308 6 RQALQWLSFLLFISQLICNTSFADVGTAARYGPPFLPTTC 45 (143)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~GaC 45 (143)
||+.++.++++++.|++..++.+..|+.+|.|- .....|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~a~~g~I~f~G~-Iv~~tC 41 (197)
T PRK15262 3 RKLMKKIILFLGLLFALTSPPAYAGQDVDLTAN-IKNSTC 41 (197)
T ss_pred hHHHHHHHHHHHHHHHhcccccccCCEEEEEEE-EEcCCc
Confidence 677888888888888888888888999999773 345688
No 15
>PF15240 Pro-rich: Proline-rich
Probab=72.28 E-value=2.5 Score=33.03 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhhccCCceeeEEEeC
Q 032308 10 QWLSFLLFISQLICNTSFADVGTAARYG 37 (143)
Q Consensus 10 ~~~~~~~~~~~~~~~~a~~~~G~aT~Y~ 37 (143)
|+|+||.+++|+|+|+...+.. ..+.+
T Consensus 1 MLlVLLSvALLALSSAQ~~dEd-v~~e~ 27 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDED-VSQEE 27 (179)
T ss_pred ChhHHHHHHHHHhhhccccccc-ccccc
Confidence 3556666777777777666554 34444
No 16
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=55.01 E-value=20 Score=24.64 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCceee
Q 032308 6 RQALQWLSFLLFISQLICNTSFADVGT 32 (143)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~~G~ 32 (143)
--.|-+++|.|++.++|-+.+...+..
T Consensus 28 MtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 28 MTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 345667778888888887776665443
No 17
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=51.86 E-value=14 Score=28.17 Aligned_cols=37 Identities=8% Similarity=-0.079 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCceeeEEEeCC
Q 032308 2 LSRIRQALQWLSFLLFISQLICNTSFADVGTAARYGP 38 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~ 38 (143)
..|-||+..++++++.++++..-+..+.+....||-.
T Consensus 3 ~~r~rRl~~v~~~~~~~~~a~~Lv~~al~~n~~yF~t 39 (155)
T PRK13159 3 ATRKQRLWLVIGVLTAAALAVTLIVLALQRNMSYLFT 39 (155)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhCceEEEC
Confidence 4666777655555554444444333444455566653
No 18
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=48.33 E-value=14 Score=28.31 Aligned_cols=36 Identities=11% Similarity=-0.045 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCceeeEEEeC
Q 032308 2 LSRIRQALQWLSFLLFISQLICNTSFADVGTAARYG 37 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~ 37 (143)
..|-||++.+++++++++++..-+-.+.+....||-
T Consensus 3 ~~r~rRl~~v~~~~~~~~~a~~Lvl~al~~n~~yF~ 38 (159)
T PRK13150 3 LRRKNRLWVVCAVLAGLGLTTALVLYALRANIDLFY 38 (159)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCccEEe
Confidence 567777766666555555544444444445555544
No 19
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=45.27 E-value=38 Score=27.24 Aligned_cols=36 Identities=6% Similarity=0.001 Sum_probs=22.0
Q ss_pred CCeEEEEEee-cCCCCCCCCCCCCceEEeCHHHHHHhhc-CCCceEEEEEEE
Q 032308 93 EQTIQIRIVD-YALQLESTPSVSGTTIVLSETAFRTIAN-STATLINVEFQQ 142 (143)
Q Consensus 93 g~sV~V~V~D-~Cp~c~~~~~~~~~~lDLS~~AF~~ia~-~~~G~i~V~w~~ 142 (143)
++.+++..+| .||.|. ..++.+.+ .+.|.|.|+|..
T Consensus 117 ak~~I~vFtDp~CpyC~--------------kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 117 APRIVYVFADPNCPYCK--------------QFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred CCeEEEEEECCCChhHH--------------HHHHHHHHHhhcCceEEEEEe
Confidence 4666777888 999982 23333332 234667777754
No 20
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=43.88 E-value=4.6 Score=29.45 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=3.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhccCCceeeEEEeC
Q 032308 1 MLSRIRQALQWLSFLLFISQLICNTSFADVGTAARYG 37 (143)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~ 37 (143)
|.+|=||+..+++++++++++..-+..+..+.++||-
T Consensus 1 ~~~~~~rl~~~~~~~~~i~~~~~l~~~~~~~~~~yy~ 37 (131)
T PF03100_consen 1 MKRRKKRLILVVLGLVIIAAAIYLILYSFSDSAVYYL 37 (131)
T ss_dssp -------------------------------SSS-EE
T ss_pred CCcceeehhhHHHHHHHHHHHHHHHHHHhhccceEEc
Confidence 6666677766666565555555555555566677664
No 21
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=40.19 E-value=39 Score=22.04 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 032308 3 SRIRQALQWLSFLLFISQLICNTS 26 (143)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~a 26 (143)
+|+|+++..++.++.++++....|
T Consensus 52 ~~~~~~l~l~L~lLal~lli~AlA 75 (77)
T PF07584_consen 52 RRLRRHLLLLLRLLALALLILALA 75 (77)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHc
Confidence 468888888777666666655444
No 22
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=39.43 E-value=41 Score=21.29 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 032308 6 RQALQWLSFLLFISQLICN 24 (143)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (143)
..++++++++|.++++++-
T Consensus 2 lk~lkf~lv~imlaqllsc 20 (60)
T PF10913_consen 2 LKSLKFLLVLIMLAQLLSC 20 (60)
T ss_pred hhHHHHHHHHHHHHHHHcC
Confidence 3578889999999998864
No 23
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=39.30 E-value=27 Score=22.99 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=14.2
Q ss_pred cCCeEEEEeccCCCCCccCCCCeEEEEE
Q 032308 73 CGRQYLVRCISASEPGTCEPEQTIQIRI 100 (143)
Q Consensus 73 CG~c~~V~c~~~~~~~~C~~g~sV~V~V 100 (143)
-+.||||+..+ .+|+.+.|+|
T Consensus 52 ~~g~yev~~~~-------~dG~~~ev~v 72 (83)
T PF13670_consen 52 DDGCYEVEARD-------KDGKKVEVYV 72 (83)
T ss_pred CCCEEEEEEEE-------CCCCEEEEEE
Confidence 35568988554 2577787776
No 24
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=37.15 E-value=19 Score=27.13 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCceeeEEEeCC
Q 032308 2 LSRIRQALQWLSFLLFISQLICNTSFADVGTAARYGP 38 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~ 38 (143)
..|-||+..+++++++++++..-+..+.....+||-.
T Consensus 3 ~~~~~rl~~~~~~~~~~~~~~~L~~~a~~~~~~yf~t 39 (148)
T PRK13254 3 KRKRRRLLIILGALAALGLAVALVLYALRQNIVFFYT 39 (148)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeC
Confidence 4555565444444444444333333344555666653
No 25
>PF05324 Sperm_Ag_HE2: Sperm antigen HE2; InterPro: IPR007988 This family consists of several variants of the human and chimpanzee (Pan troglodytes) sperm antigen proteins (HE2 and EP2 respectively). The EP2 gene codes for a family of androgen-dependent, epididymis-specific secretory proteins.The EP2 gene uses alternative promoters and differential splicing to produce a family of variant messages. The translated putative protein variants differ significantly from each other. Some of these putative proteins have similarity to beta-defensins, a family of antimicrobial peptides [].; GO: 0005576 extracellular region
Probab=36.03 E-value=30 Score=23.05 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhhccCC
Q 032308 7 QALQWLSFLLFISQLICNTSFA 28 (143)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~a~~ 28 (143)
|++.....|++++|+|...+.+
T Consensus 3 ~llP~~~sLLLvaLLfPG~s~a 24 (73)
T PF05324_consen 3 RLLPSFVSLLLVALLFPGSSRA 24 (73)
T ss_pred chhHHHHHHHHHHHHccCcccc
Confidence 4566666677788888766655
No 26
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=32.83 E-value=1.1e+02 Score=23.17 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=11.0
Q ss_pred CCeEEEEEee-cCCCC
Q 032308 93 EQTIQIRIVD-YALQL 107 (143)
Q Consensus 93 g~sV~V~V~D-~Cp~c 107 (143)
++...+..+| .||.|
T Consensus 77 ~~~~i~~f~D~~Cp~C 92 (197)
T cd03020 77 GKRVVYVFTDPDCPYC 92 (197)
T ss_pred CCEEEEEEECCCCccH
Confidence 4666677788 78877
No 27
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=32.76 E-value=34 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032308 2 LSRIRQALQWLSFLLFISQ 20 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (143)
+++||....+|+++|.++|
T Consensus 1 L~kIR~r~~lLi~vIglAL 19 (145)
T PF13623_consen 1 LQKIRQRGGLLIIVIGLAL 19 (145)
T ss_pred ChhHhhcchHHHHHHHHHH
Confidence 5789997665555444443
No 28
>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional
Probab=32.25 E-value=42 Score=31.00 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=25.0
Q ss_pred CCeEEEEeccCCCCCccCCCCeEEEEEee-----cCCCCCCCCCCCCceEEeC--HHHHHH
Q 032308 74 GRQYLVRCISASEPGTCEPEQTIQIRIVD-----YALQLESTPSVSGTTIVLS--ETAFRT 127 (143)
Q Consensus 74 G~c~~V~c~~~~~~~~C~~g~sV~V~V~D-----~Cp~c~~~~~~~~~~lDLS--~~AF~~ 127 (143)
+.|++|+|.+ +.+++.|++.+ .||+ +..++++ ..+|.+
T Consensus 507 ~~C~~v~C~~--------~~~t~sV~v~G~~~w~~Cp~--------G~~I~~~~~~~~f~~ 551 (622)
T PTZ00257 507 ALCANVMCDT--------AARTYSVQVRGSSGYVACTP--------GESIDLATLSAAFVE 551 (622)
T ss_pred CEEEEEECCC--------CCCEEEEEEEeCCCEEECCC--------CCeEccCCCCccccC
Confidence 7899999973 23678888774 4654 3567775 345653
No 29
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=31.23 E-value=1.2e+02 Score=20.54 Aligned_cols=6 Identities=50% Similarity=1.453 Sum_probs=3.4
Q ss_pred CCCc-cc
Q 032308 42 PTTC-YG 47 (143)
Q Consensus 42 ~GaC-~g 47 (143)
+|.| |.
T Consensus 42 ~g~C~y~ 48 (82)
T PF12071_consen 42 PGDCSYS 48 (82)
T ss_pred CccCCcC
Confidence 4567 54
No 30
>PRK02710 plastocyanin; Provisional
Probab=30.90 E-value=70 Score=22.60 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=9.4
Q ss_pred ChHHHHHHHHHHHHHH
Q 032308 1 MLSRIRQALQWLSFLL 16 (143)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (143)
|..|.|..+..+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (119)
T PRK02710 1 MAKRLRSIAAALVAVV 16 (119)
T ss_pred CchhHHHHHHHHHHHH
Confidence 5667776666555443
No 31
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.53 E-value=36 Score=26.08 Aligned_cols=36 Identities=11% Similarity=-0.066 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccCCceeeEEEeC
Q 032308 2 LSRIRQALQWLSFLLFISQLICNTSFADVGTAARYG 37 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~ 37 (143)
..|-||++.++++++.++++..-+-.+.+...+||-
T Consensus 3 ~~~~rRl~~~~~~~~~~~~a~~L~l~al~~n~~yF~ 38 (160)
T PRK13165 3 PRRKKRLWLACAVLAGLALTIGLVLYALRSNIDLFY 38 (160)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhCccEEe
Confidence 345566544444444343333223334444455543
No 32
>PF08664 YcbB: YcbB domain; InterPro: IPR013972 YcbB is a DNA-binding protein [].
Probab=28.08 E-value=37 Score=25.24 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=9.9
Q ss_pred ChHHHHHHHHHH
Q 032308 1 MLSRIRQALQWL 12 (143)
Q Consensus 1 ~~~~~~~~~~~~ 12 (143)
|-|||||+....
T Consensus 67 ~EQRIRRai~~a 78 (134)
T PF08664_consen 67 IEQRIRRAIKQA 78 (134)
T ss_pred HHHHHHHHHHHH
Confidence 569999998883
No 33
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=27.39 E-value=51 Score=21.78 Aligned_cols=9 Identities=22% Similarity=0.312 Sum_probs=4.6
Q ss_pred EEEeCCCCC
Q 032308 33 AARYGPPFL 41 (143)
Q Consensus 33 aT~Y~~~~~ 41 (143)
+-+|+|.+.
T Consensus 25 g~~y~p~y~ 33 (71)
T PF04202_consen 25 GYYYYPGYN 33 (71)
T ss_pred ccccCCCCC
Confidence 345666543
No 34
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=26.85 E-value=73 Score=18.46 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=6.0
Q ss_pred hhhccCCceeeEEE
Q 032308 22 ICNTSFADVGTAAR 35 (143)
Q Consensus 22 ~~~~a~~~~G~aT~ 35 (143)
++++....-|+.+-
T Consensus 15 l~~a~~~~pG~ViI 28 (36)
T PF08194_consen 15 LAAAVPATPGNVII 28 (36)
T ss_pred HHhcccCCCCeEEE
Confidence 33333343555543
No 35
>PF04149 DUF397: Domain of unknown function (DUF397); InterPro: IPR007278 The function of this family is unknown. It has been suggested that some members of this family are regulators of transcription.
Probab=25.88 E-value=1.7e+02 Score=18.12 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=25.6
Q ss_pred CCeEEEEeccCCCCCccCCCCeEEEEEee-cCCCCCCCCCCCCceEEeCHHHHHHhh
Q 032308 74 GRQYLVRCISASEPGTCEPEQTIQIRIVD-YALQLESTPSVSGTTIVLSETAFRTIA 129 (143)
Q Consensus 74 G~c~~V~c~~~~~~~~C~~g~sV~V~V~D-~Cp~c~~~~~~~~~~lDLS~~AF~~ia 129 (143)
|.|+||.-. ++ . |-|-| +-| ....|-+++.+|..+-
T Consensus 15 ~~CVEva~~---------~~--~-v~vRDSk~p--------~~~~L~~t~~eW~aFl 51 (56)
T PF04149_consen 15 GNCVEVARL---------PG--G-VAVRDSKDP--------DGPVLTFTPAEWAAFL 51 (56)
T ss_pred CCcEEEEee---------cc--e-EEEecCCCC--------CCCEEEeCHHHHHHHH
Confidence 889999743 12 2 66767 344 3578999999999863
No 36
>PRK10095 ribonuclease I; Provisional
Probab=25.74 E-value=59 Score=26.83 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhccC-----CceeeEEEeCC--CCCCCCc
Q 032308 1 MLSRIRQALQWLSFLLFISQLICNTSF-----ADVGTAARYGP--PFLPTTC 45 (143)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~-----~~~G~aT~Y~~--~~~~GaC 45 (143)
|.-|.|+++.+.|+++ ++++.+. ...|...||-- ++.++-|
T Consensus 1 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~fd~YvLALSWqP~fC 48 (268)
T PRK10095 1 MKAFWRNAALLAVSLL----PFSSANAVALQAKQYGDFDRYVLALSWQTGFC 48 (268)
T ss_pred CchHHHHHHHHHHHHh----hhhhhhccCCCCCcCCCcceEEEEEeeCHHHH
Confidence 6667777776655553 2333332 35677777762 2345555
No 37
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=25.53 E-value=89 Score=22.81 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=10.2
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 032308 1 MLSRIRQALQWLSFLLFISQ 20 (143)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (143)
|.+|=|.+|.++|.++.++|
T Consensus 2 ~sr~~Ra~Ls~~ln~LAL~~ 21 (118)
T PF07803_consen 2 MSRRQRALLSLILNLLALAF 21 (118)
T ss_pred cchhhHHHHHHHHHHHHHHH
Confidence 34555556666554443333
No 38
>PHA02945 interferon resistance protein; Provisional
Probab=25.31 E-value=87 Score=21.71 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=17.6
Q ss_pred CCeEEEEEeecCCCCCCCCCCCCceEEeC
Q 032308 93 EQTIQIRIVDYALQLESTPSVSGTTIVLS 121 (143)
Q Consensus 93 g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS 121 (143)
|++|+++|...=|. .+|+|||
T Consensus 60 GqkvV~KVirVd~~--------kg~IDlS 80 (88)
T PHA02945 60 GKTVKVKVIRVDYT--------KGYIDVN 80 (88)
T ss_pred CCEEEEEEEEECCC--------CCEEEeE
Confidence 78999999888774 6799997
No 39
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=25.21 E-value=1e+02 Score=16.82 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 032308 6 RQALQWLSFLLFISQ 20 (143)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (143)
||.+..++.++++.+
T Consensus 11 r~~l~~l~~v~l~ll 25 (30)
T PF08525_consen 11 RRALIALSAVVLVLL 25 (30)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666555555533
No 40
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=25.18 E-value=84 Score=18.36 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=20.2
Q ss_pred EEEEEeecCCCCCCCCCCCCceEEeCHHHHHHhhcCCCceEEEEE
Q 032308 96 IQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANSTATLINVEF 140 (143)
Q Consensus 96 V~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~V~w 140 (143)
-.+.|.|.=++|.| ...+++. +.|++-..|.|.|+|
T Consensus 10 ~~L~I~~v~tsCgC------t~~~~~~---~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 10 SPLVITDVQTSCGC------TTAEYSK---KPIAPGESGKIKVTY 45 (45)
T ss_pred CcEEEEEeeEccCC------EEeeCCc---ceECCCCEEEEEEEC
Confidence 34555665566654 2333333 336666678887776
No 41
>PRK15260 fimbrial protein SteF; Provisional
Probab=25.13 E-value=77 Score=24.15 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCceeeEEEeCCCCCCCCc
Q 032308 4 RIRQALQWLSFLLFISQLICNTSFADVGTAARYGPPFLPTTC 45 (143)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~GaC 45 (143)
||-|..+ .+++.+++|++...+.+..|+.+|.|. .....|
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~I~F~G~-Ii~~~C 42 (178)
T PRK15260 3 RIFQTAG-HLIGGVMLWAVCNTLPAATPNVHYSGK-LVAGAC 42 (178)
T ss_pred chhhcch-HHHHHHHHHhcccccccCCCEEEEEEE-EEeCCc
Confidence 5655544 356677777777777788899999884 334589
No 42
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=25.00 E-value=1.2e+02 Score=25.02 Aligned_cols=35 Identities=11% Similarity=0.222 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc--cCCceeeEEEeCC
Q 032308 4 RIRQALQWLSFLLFISQLICNT--SFADVGTAARYGP 38 (143)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--a~~~~G~aT~Y~~ 38 (143)
.|||.+..+++++.+.++++.. +....++.|++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~ 38 (396)
T PRK09474 2 KIKKGLRTLALSALATLMFSASALAKIEEGKLVIWIN 38 (396)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccccccCCCeEEEEEC
Confidence 3677888877788777787622 3445678888863
No 43
>PRK11901 hypothetical protein; Reviewed
Probab=25.00 E-value=63 Score=27.57 Aligned_cols=25 Identities=24% Similarity=0.021 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCc
Q 032308 5 IRQALQWLSFLLFISQLICNTSFAD 29 (143)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~a~~~ 29 (143)
=|||+|.-+=++||+||+..+..+.
T Consensus 34 SRQh~MiGiGilVLlLLIi~IgSAL 58 (327)
T PRK11901 34 SRQHMMIGIGILVLLLLIIAIGSAL 58 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4888887666666666665554443
No 44
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=24.34 E-value=1.4e+02 Score=21.71 Aligned_cols=37 Identities=16% Similarity=0.022 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhccCC----ceeeEEEeC
Q 032308 1 MLSRIRQALQWLSFLLFISQLICNTSFA----DVGTAARYG 37 (143)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~G~aT~Y~ 37 (143)
+.+.+.|.+++.+.++.++++.+..... ...++.|.+
T Consensus 5 ~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~ 45 (149)
T PF04535_consen 5 IASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSD 45 (149)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecc
Confidence 3578899999988888888777665542 235666654
No 45
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=23.64 E-value=1.1e+02 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhccCCceeeEEEeCCCC
Q 032308 9 LQWLSFLLFISQLICNTSFADVGTAARYGPPF 40 (143)
Q Consensus 9 ~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~ 40 (143)
+.++++.+++++++...+.- +.-+|++.+
T Consensus 7 ~~ll~i~~i~~l~li~~~~~---~~ge~gGaD 35 (97)
T COG1930 7 LNLLAIGIILALPLIPFSFV---TDGEFGGAD 35 (97)
T ss_pred HHHHHHHHHHHHHHHHheec---ccccccCCc
Confidence 34444555555555555544 444567653
No 46
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=23.19 E-value=1.2e+02 Score=18.76 Aligned_cols=17 Identities=12% Similarity=0.325 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032308 6 RQALQWLSFLLFISQLI 22 (143)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (143)
+|.+.+++.++++++++
T Consensus 3 Kk~i~~i~~~l~~~~~l 19 (48)
T PRK10081 3 KKTIAAIFSVLVLSTVL 19 (48)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 47
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=22.70 E-value=28 Score=25.01 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHH
Q 032308 1 MLSRIRQALQWLSFLL 16 (143)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (143)
|++.||++.+++.+++
T Consensus 1 Ml~~~r~~~~~~~~~~ 16 (154)
T PF13624_consen 1 MLRFIRKNSKVFKILI 16 (154)
T ss_dssp ----------------
T ss_pred CccccccchhhhhhhH
Confidence 8899999876544333
No 48
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=22.26 E-value=29 Score=26.02 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 032308 7 QALQWLSFLLFISQLICNT 25 (143)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (143)
|||-+|-+|++++.||+..
T Consensus 4 r~l~~LavLL~~A~Lfag~ 22 (143)
T PF05887_consen 4 RHLCLLAVLLFGAALFAGV 22 (143)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 3444444455555555443
No 49
>PRK15216 putative fimbrial biosynthesis regulatory protein; Provisional
Probab=21.61 E-value=1.8e+02 Score=24.89 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhccCCceeeEEEeC--------------------CCCCCCCc-ccCCCCCCCCCCeEEEe
Q 032308 12 LSFLLFISQLICNTSFADVGTAARYG--------------------PPFLPTTC-YGNDPTQFPSSNLFAAA 62 (143)
Q Consensus 12 ~~~~~~~~~~~~~~a~~~~G~aT~Y~--------------------~~~~~GaC-~g~~~~~~p~~~~iaA~ 62 (143)
+++++++.|.+...-.+=.|+.|+-. ..+....| ..+.-++..+++.|+.+
T Consensus 4 ~~l~~~m~~~~~~~yaac~~~it~~~~~~i~~d~~~l~~~q~~~~~~~f~d~~c~~t~~vt~~~~sd~ivg~ 75 (340)
T PRK15216 4 LLFLLMMMQFTQLGYAACNATLTNTKDYTIQSDSLMLGGEESAIITNGFTDANCSNSDVVTKLETSDHIIGM 75 (340)
T ss_pred hHHHHHHHHHcccchhheeeEEeeccceEEecceEEeccceeeEeeccccccccccCceeeccCccceEEee
Confidence 45566666665544455566666533 12345788 65555666678888887
No 50
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=21.49 E-value=1.4e+02 Score=19.73 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 032308 2 LSRIRQALQWLSFLLFIS 19 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (143)
.+|||+++.+.+++.+.+
T Consensus 12 ~~~l~~~l~~a~~lsl~~ 29 (70)
T cd00927 12 ASRIKRHLIVAFVLSLGA 29 (70)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999988866555433
No 51
>PF01623 Carla_C4: Carlavirus putative nucleic acid binding protein; InterPro: IPR002568 This family of carlavirus nucleic acid binding proteins includes a motif for a potential C-4 type zinc finger this has four highly conserved cysteine residues and is a conserved feature of the carlaviruses 3' terminal ORF []. These proteins may function as viral transcriptional regulators. The carlavirus family includes Garlic latent virus and Potato virus S and Potato virus M, these viruses are positive strand, ssRNA with no DNA stage.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent
Probab=20.89 E-value=40 Score=23.55 Aligned_cols=10 Identities=40% Similarity=0.663 Sum_probs=8.5
Q ss_pred cccCCeEEEE
Q 032308 71 ASCGRQYLVR 80 (143)
Q Consensus 71 ~~CG~c~~V~ 80 (143)
..|-+||+|.
T Consensus 54 gRC~RCyRv~ 63 (91)
T PF01623_consen 54 GRCHRCYRVY 63 (91)
T ss_pred CCCCCCeeec
Confidence 4699999996
No 52
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=20.81 E-value=1.4e+02 Score=23.67 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=12.6
Q ss_pred CCCeEEEEEee-cCCCC
Q 032308 92 PEQTIQIRIVD-YALQL 107 (143)
Q Consensus 92 ~g~sV~V~V~D-~Cp~c 107 (143)
+++.+.+..+| .||.|
T Consensus 106 ~~k~~I~vFtDp~CpyC 122 (232)
T PRK10877 106 QEKHVITVFTDITCGYC 122 (232)
T ss_pred CCCEEEEEEECCCChHH
Confidence 35677777899 89997
No 53
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=20.60 E-value=1.6e+02 Score=16.75 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=15.3
Q ss_pred EEeecCCCCCCCCCCCCceEEeCHHHHHHhh
Q 032308 99 RIVDYALQLESTPSVSGTTIVLSETAFRTIA 129 (143)
Q Consensus 99 ~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia 129 (143)
..+|.||.| .+ +=|....|+++.
T Consensus 17 ~~id~C~~C------~G--~W~d~~el~~~~ 39 (41)
T PF13453_consen 17 VEIDVCPSC------GG--IWFDAGELEKLL 39 (41)
T ss_pred EEEEECCCC------Ce--EEccHHHHHHHH
Confidence 467999987 23 445666777653
No 54
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=20.28 E-value=53 Score=23.29 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=23.3
Q ss_pred CCeEEEEEee-cCCCCCCCCCCCCceEEeCHHHHHHhhc-CCCceEEEEEEEC
Q 032308 93 EQTIQIRIVD-YALQLESTPSVSGTTIVLSETAFRTIAN-STATLINVEFQQV 143 (143)
Q Consensus 93 g~sV~V~V~D-~Cp~c~~~~~~~~~~lDLS~~AF~~ia~-~~~G~i~V~w~~V 143 (143)
.+.+++...| .||.| .. +.+...+.+.. .+.|.|.+.|+.+
T Consensus 12 a~~~v~~f~d~~Cp~C------~~----~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 12 APITVTEFFDFQCPHC------AK----FHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TSEEEEEEE-TTSHHH------HH----HHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeEEEEEECCCCHhH------HH----HHHHHhhhhhhccCCCceEEEEEEc
Confidence 3455555677 89997 22 33333333333 2578888888764
No 55
>COG3838 VirB2 Type IV secretory pathway, VirB2 components (pilins) [Intracellular trafficking and secretion]
Probab=20.14 E-value=1.1e+02 Score=21.96 Aligned_cols=28 Identities=29% Similarity=0.210 Sum_probs=15.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhccCC
Q 032308 1 MLSRIRQALQWLSFLLFISQLICNTSFA 28 (143)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 28 (143)
|.+|||..+..+++.+.+.++....+.+
T Consensus 4 l~~~i~~~~a~~~~a~al~l~~~~~~~~ 31 (108)
T COG3838 4 LSSRIRPAIAALIVAVALLLLAAFVAPA 31 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3578888888544444443444444333
No 56
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=20.08 E-value=3.5e+02 Score=24.39 Aligned_cols=51 Identities=20% Similarity=0.135 Sum_probs=35.7
Q ss_pred cCCeEEEEeccCCCCCccCCCCeEEEEEeecCCCCCCCCCCCCceEEeCHHHHHHhhcCCCceEEEE
Q 032308 73 CGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLSETAFRTIANSTATLINVE 139 (143)
Q Consensus 73 CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~V~ 139 (143)
=+..++|+. ++++++..|++.=.- -.++.+-||..+|++|.-...-.|.|.
T Consensus 29 ~~~rv~v~~----------~~~~~~a~~~~~~~~------~~~~~~gl~~~~~~~l~~~~g~~v~v~ 79 (493)
T TIGR02645 29 PQDRVEVRI----------GGKSLIAILVGSDTL------VEMGEIGLSVSAVETFMAREGDIVTVT 79 (493)
T ss_pred cCCeEEEEe----------CCEEEEEEEeccccc------ccCCeeeccHHHHHHcCCCCCCEEEEe
Confidence 377888884 367898888763111 246789999999999966554446553
Done!