Query 032308
Match_columns 143
No_of_seqs 125 out of 936
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 20:12:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032308.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032308hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1n10a2 b.52.1.3 (A:1003-1145) 100.0 1.5E-32 1.1E-36 202.7 10.9 108 26-143 15-136 (143)
2 d1wc2a1 b.52.1.1 (A:1-180) End 100.0 2.9E-30 2.1E-34 196.3 7.3 115 27-143 13-155 (180)
3 d1bw3a_ b.52.1.2 (A:) Barwin { 98.8 1.5E-09 1.1E-13 75.5 5.2 60 67-143 57-121 (125)
4 d2enga_ b.52.1.1 (A:) Endogluc 96.4 0.0016 1.2E-07 48.6 4.6 52 59-121 72-123 (210)
5 d1b8ta1 g.39.1.3 (A:1-35) Cyst 36.9 5.3 0.00039 20.6 0.8 13 66-78 3-15 (35)
6 d1v58a1 c.47.1.9 (A:62-230) Th 33.9 11 0.00081 25.1 2.4 37 94-143 36-74 (169)
7 d2dlqa2 g.37.1.1 (A:35-62) GLI 24.6 9.1 0.00066 18.6 0.3 7 71-77 5-11 (28)
8 d1ppjd2 f.23.11.1 (D:196-241) 23.5 33 0.0024 18.6 2.7 21 2-22 4-24 (46)
9 d1v54i_ f.23.3.1 (I:) Mitochon 19.7 53 0.0038 19.5 3.3 15 2-16 14-28 (73)
10 d1eeja1 c.47.1.9 (A:61-216) Di 16.2 20 0.0015 23.3 0.8 16 92-107 25-41 (156)
No 1
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=99.97 E-value=1.5e-32 Score=202.66 Aligned_cols=108 Identities=22% Similarity=0.436 Sum_probs=92.5
Q ss_pred cCCceeeEEEeCCCC------CCCCc-ccCCCCCCCCCCeEEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEE
Q 032308 26 SFADVGTAARYGPPF------LPTTC-YGNDPTQFPSSNLFAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQI 98 (143)
Q Consensus 26 a~~~~G~aT~Y~~~~------~~GaC-~g~~~~~~p~~~~iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V 98 (143)
..|..|+||||+.++ ..||| |++.. +.|.+.++||+|+.+|++|..||+||||+|.+ +.+|. +++|+|
T Consensus 15 ~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~-~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~---~~~c~-~~sv~V 89 (143)
T d1n10a2 15 DKWLDAKSTWYGKPTGAGPKDNGGACGYKDVD-KPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTK---PEACS-GEPVVV 89 (143)
T ss_dssp CSCEEEEEEEEC----------CCTTCCCCTT-STTTTTCEEEECHHHHGGGTTSSCEEEEEECS---STTBC-SCCEEE
T ss_pred CCcEeeEEeEeCCCCCCCCCCCcccCCCCCcc-cCCCcceEEEeCHhHccCCCcCCcceEeEcCC---CCccc-CCCEEE
Confidence 468899999998542 36999 98854 45788999999999999999999999999984 56886 789999
Q ss_pred EEeecCCCCCCCCCCCCceEEeCHHHHHHhhcC-------CCceEEEEEEEC
Q 032308 99 RIVDYALQLESTPSVSGTTIVLSETAFRTIANS-------TATLINVEFQQV 143 (143)
Q Consensus 99 ~V~D~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~-------~~G~i~V~w~~V 143 (143)
+|||.||++ ++.+|||||+.||++||+. +.|+|+|+||||
T Consensus 90 ~vtd~c~~~-----~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV 136 (143)
T d1n10a2 90 HITDDNEEP-----IAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRV 136 (143)
T ss_dssp EEEEECSSC-----SSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEEC
T ss_pred EEEecccCC-----CCCccccCCHHHHhhhccccchhhheecCccceEEEEE
Confidence 999999975 3678999999999999996 479999999998
No 2
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}
Probab=99.96 E-value=2.9e-30 Score=196.31 Aligned_cols=115 Identities=12% Similarity=0.123 Sum_probs=93.4
Q ss_pred CCceeeEEEeCCCCCCCCc-ccCCCCCCCC----CCeEEEeCCCCCCC------CcccCCeEEEEeccCCC---CCccCC
Q 032308 27 FADVGTAARYGPPFLPTTC-YGNDPTQFPS----SNLFAAAGDGIWDN------GASCGRQYLVRCISASE---PGTCEP 92 (143)
Q Consensus 27 ~~~~G~aT~Y~~~~~~GaC-~g~~~~~~p~----~~~iaA~s~~~~~~------g~~CG~c~~V~c~~~~~---~~~C~~ 92 (143)
.+..+++|||+.. +.||| ||+.....|. +.++||+|+.+|++ |+.||+||||+|++... +..|..
T Consensus 13 g~~~A~aT~Ygd~-~~GACGyG~~~~~~~~~~g~G~~tAAlS~~lf~~~~~~~~G~~CG~CyeV~C~~~~~~~~~~~~~~ 91 (180)
T d1wc2a1 13 GKSCASTTNYHDS-HKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVRE 91 (180)
T ss_dssp TEEEEEEEEECCC-BCTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCCT
T ss_pred CccccceEEeCCC-CCCCCCCCcCCCCCccccCCcceEeeccHHHhcCCcccccccccCCEEEEEECCCCCCccCCCCCC
Confidence 4567899999964 58999 9987654443 47899999999999 89999999999986431 122334
Q ss_pred CCeEEEEEeecCCC-----CCCCCC---------CCCceEEeCHHHHHHhhcCCCceEEEEEEEC
Q 032308 93 EQTIQIRIVDYALQ-----LESTPS---------VSGTTIVLSETAFRTIANSTATLINVEFQQV 143 (143)
Q Consensus 93 g~sV~V~V~D~Cp~-----c~~~~~---------~~~~~lDLS~~AF~~ia~~~~G~i~V~w~~V 143 (143)
+++|+|||||+||. .||+++ +...||||| ++|.+||....|+|+|+||||
T Consensus 92 g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs-~af~~ia~~~~G~v~V~yrrV 155 (180)
T d1wc2a1 92 GLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLE-NGRSQVTGMGWNNPETTWEVV 155 (180)
T ss_dssp TCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEE-CTTSTTGGGTCSSEEEEEEEE
T ss_pred CCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceech-HHHHHHhhhcCCcceeEEEEe
Confidence 78999999999996 367654 345699998 599999999999999999997
No 3
>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=98.84 E-value=1.5e-09 Score=75.52 Aligned_cols=60 Identities=28% Similarity=0.367 Sum_probs=49.1
Q ss_pred CCCCcccCCeEEEEeccCCCCCccCCCCeEEEEEeecCCCCCCCCCCCCceEEeC-HHHHHHhhcCC----CceEEEEEE
Q 032308 67 WDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLS-ETAFRTIANST----ATLINVEFQ 141 (143)
Q Consensus 67 ~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS-~~AF~~ia~~~----~G~i~V~w~ 141 (143)
..+.+.||+|++||... +|++++++|||+|.. +.|||. +..|.+|-..+ .|.+.|+|+
T Consensus 57 p~gq~sCGkclrvTN~a--------tga~~~~RiVDqCsn---------gGlDLD~~~vFn~iDtdG~G~~~Ghl~V~y~ 119 (125)
T d1bw3a_ 57 PRGQAACGKCLRVTNPA--------TGAQITARIVDQCAN---------GGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQ 119 (125)
T ss_dssp CCSGGGTTCEEEEEETT--------TTEEEEEEEEECCSS---------SSCCSCSSSSHHHHCSSCHHHHHSEEEEEEE
T ss_pred CcCcccccceEEeeecc--------cCcEEEEEEeecccC---------CCCccccHhhhheecCCCcccccccEEEEEE
Confidence 34558899999999763 478999999999964 469999 78999996544 588999998
Q ss_pred EC
Q 032308 142 QV 143 (143)
Q Consensus 142 ~V 143 (143)
.|
T Consensus 120 fV 121 (125)
T d1bw3a_ 120 FV 121 (125)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 4
>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}
Probab=96.40 E-value=0.0016 Score=48.63 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=36.0
Q ss_pred EEEeCCCCCCCCcccCCeEEEEeccCCCCCccCCCCeEEEEEeecCCCCCCCCCCCCceEEeC
Q 032308 59 FAAAGDGIWDNGASCGRQYLVRCISASEPGTCEPEQTIQIRIVDYALQLESTPSVSGTTIVLS 121 (143)
Q Consensus 59 iaA~s~~~~~~g~~CG~c~~V~c~~~~~~~~C~~g~sV~V~V~D~Cp~c~~~~~~~~~~lDLS 121 (143)
+||.+-.-......|.+|||++-+++. .+||+.+|+|++.--+- ..+||||.
T Consensus 72 fAA~~~~g~~e~~~Cc~Cy~LtFTs~~-----~~GKkMiVQ~tNTGgDl------g~n~FDl~ 123 (210)
T d2enga_ 72 FAATSIAGSNEAGWCCACYELTFTSGP-----VAGKKMVVQSTSTGGDL------GSNHFDLN 123 (210)
T ss_dssp EEEEECTTCCHHHHTTCEEEEEECSGG-----GTTCEEEEEEEEC-----------CCEEEEE
T ss_pred eeeeeecCCCccccccccEEEEeecCC-----cCCCEEEEEEeccCCcc------CCCeeeEe
Confidence 566665444445779999999987632 24899999999987653 56899985
No 5
>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=36.93 E-value=5.3 Score=20.62 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=10.6
Q ss_pred CCCCCcccCCeEE
Q 032308 66 IWDNGASCGRQYL 78 (143)
Q Consensus 66 ~~~~g~~CG~c~~ 78 (143)
.|.+|..||.|-+
T Consensus 3 n~ggg~kcg~c~k 15 (35)
T d1b8ta1 3 NWGGGKKCGVCQK 15 (35)
T ss_dssp CCCCCEECTTTCC
T ss_pred ccCCCceeccccc
Confidence 4888999999953
No 6
>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.91 E-value=11 Score=25.07 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=20.4
Q ss_pred CeEEE-EEee-cCCCCCCCCCCCCceEEeCHHHHHHhhcCCCceEEEEEEEC
Q 032308 94 QTIQI-RIVD-YALQLESTPSVSGTTIVLSETAFRTIANSTATLINVEFQQV 143 (143)
Q Consensus 94 ~sV~V-~V~D-~Cp~c~~~~~~~~~~lDLS~~AF~~ia~~~~G~i~V~w~~V 143 (143)
..++| ..+| .||.| ..-+ + ..+++. +.|.+.|.|+++
T Consensus 36 a~~tv~vF~D~~CP~C------~~~~----~-~l~~l~--~~~~v~v~~~~~ 74 (169)
T d1v58a1 36 APVIVYVFADPFCPYC------KQFW----Q-QARPWV--DSGKVQLRTLLV 74 (169)
T ss_dssp CSEEEEEEECTTCHHH------HHHH----H-HHHHHH--HTTSEEEEEEEC
T ss_pred CCEEEEEEECCCCcch------HHHH----H-HHHHHH--hccceeEEEEec
Confidence 34444 4567 99997 2222 1 122232 357788888764
No 7
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.59 E-value=9.1 Score=18.61 Aligned_cols=7 Identities=43% Similarity=1.265 Sum_probs=5.0
Q ss_pred cccCCeE
Q 032308 71 ASCGRQY 77 (143)
Q Consensus 71 ~~CG~c~ 77 (143)
..||+||
T Consensus 5 ~kcgkcy 11 (28)
T d2dlqa2 5 PKCGKCY 11 (28)
T ss_dssp TTTCCBC
T ss_pred ccchhhh
Confidence 3588887
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.49 E-value=33 Score=18.55 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 032308 2 LSRIRQALQWLSFLLFISQLI 22 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (143)
-+|=|+-++++++++++..++
T Consensus 4 d~RK~mG~Kv~~~l~~l~~l~ 24 (46)
T d1ppjd2 4 DHRKRMGLKMLLMMGLLLPLV 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888777666554
No 9
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.70 E-value=53 Score=19.51 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHH
Q 032308 2 LSRIRQALQWLSFLL 16 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (143)
.+|||+|+...+++-
T Consensus 14 ~~~lk~hl~~a~~ls 28 (73)
T d1v54i_ 14 ARRLRFHIVGAFMVS 28 (73)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 479999988755444
No 10
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.23 E-value=20 Score=23.28 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=12.2
Q ss_pred CCCeEEEEEee-cCCCC
Q 032308 92 PEQTIQIRIVD-YALQL 107 (143)
Q Consensus 92 ~g~sV~V~V~D-~Cp~c 107 (143)
+.+.+.|..+| .||.|
T Consensus 25 ~ak~tIv~FsD~~CpyC 41 (156)
T d1eeja1 25 QEKHVITVFTDITCGYC 41 (156)
T ss_dssp TCCEEEEEEECTTCHHH
T ss_pred CCCEEEEEEeCCCCHHH
Confidence 35667777888 99998
Done!