BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032310
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 4
          Length = 94

 Score =  116 bits (290), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%)

Query: 59  CQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRS 118
           CQV+ C A+M +AK YHRRHKVC+ HAKA  V + GL QRFCQQCSRFH+L EFD+ KRS
Sbjct: 11  CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70

Query: 119 CRRRLAGHNERRRK 132
           CRRRLAGHNERRRK
Sbjct: 71  CRRRLAGHNERRRK 84


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
           Promoter Binding Protein-like 7
          Length = 88

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 57/85 (67%)

Query: 55  TFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDD 114
           +   CQV +C A++++ K YH+RH+VC   A A  V ++G  +R+CQQC +FH L +FD+
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61

Query: 115 TKRSCRRRLAGHNERRRKSSADYHG 139
            KRSCRR+L  HN RR++   D  G
Sbjct: 62  GKRSCRRKLERHNNRRKRKPVDKGG 86


>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 12 Lacking The Second
           Zinc- Binding Site
          Length = 60

 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 57  VSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFD 113
           + CQV+NC A+++  K YHRRHKVC+ H+KA    V G+ QRFCQQCSRFH L EFD
Sbjct: 4   ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|1YYA|A Chain A, Crystal Structure Of Tt0473, Putative Triosephosphate
           Isomerase From Thermus Thermophilus Hb8
 pdb|1YYA|B Chain B, Crystal Structure Of Tt0473, Putative Triosephosphate
           Isomerase From Thermus Thermophilus Hb8
          Length = 250

 Score = 26.6 bits (57), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 5/23 (21%)

Query: 118 SCRRRLAGHNERRRKSSADYHGE 140
            CR  + GH+ERRR     YHGE
Sbjct: 86  GCRYAIVGHSERRR-----YHGE 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.130    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,896,209
Number of Sequences: 62578
Number of extensions: 85258
Number of successful extensions: 141
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 5
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)