Query 032310
Match_columns 143
No_of_seqs 130 out of 275
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 20:15:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 8.2E-48 2.8E-52 281.0 -1.3 91 47-141 3-93 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 8.5E-46 2.9E-50 267.6 -3.2 82 58-139 5-86 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 3.8E-35 1.3E-39 199.2 0.3 56 58-113 5-60 (60)
4 1vk6_A NADH pyrophosphatase; 1 28.2 12 0.00043 29.8 0.0 37 71-108 100-136 (269)
5 2eqf_A Tumor necrosis factor, 25.6 39 0.0013 21.5 2.0 17 48-66 3-19 (46)
6 1gh9_A 8.3 kDa protein (gene M 20.0 25 0.00086 23.7 0.3 28 80-110 6-33 (71)
7 2dt7_A Splicing factor 3A subu 19.6 25 0.00086 21.1 0.2 11 68-78 19-29 (38)
8 2cs3_A Protein C14ORF4, MY039 17.6 39 0.0013 24.2 0.9 37 52-105 11-47 (93)
9 2eln_A Zinc finger protein 406 16.3 81 0.0028 17.6 1.9 23 55-78 8-30 (38)
10 2d8r_A THAP domain-containing 15.9 72 0.0025 21.6 1.9 17 49-65 1-18 (99)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=8.2e-48 Score=281.04 Aligned_cols=91 Identities=65% Similarity=1.088 Sum_probs=80.2
Q ss_pred CCCCCCCCCccccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccccccchHHHHHhhH
Q 032310 47 SAGAGGPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGH 126 (143)
Q Consensus 47 ~~g~~~p~~~~~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~H 126 (143)
++|++.| +|||+||.+||+.+|.||+||+||+.|++||+|+|+|+.+||||||++||+|+|||++|||||++|++|
T Consensus 3 ~~~~~~~----~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~h 78 (94)
T 1ul4_A 3 SGSSGLR----LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGH 78 (94)
T ss_dssp -----CC----CCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCC
T ss_pred CCCCCCC----ceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHH
Confidence 4556667 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCcCCC
Q 032310 127 NERRRKSSADYHGEG 141 (143)
Q Consensus 127 n~RRRk~~~~~~~~g 141 (143)
|+||||+++|+...|
T Consensus 79 n~RRRk~~~~~~~~~ 93 (94)
T 1ul4_A 79 NERRRKSSGESGPSS 93 (94)
T ss_dssp CCCCCSCCCC-----
T ss_pred HHHhccCCCCcCCCC
Confidence 999999999987543
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=8.5e-46 Score=267.64 Aligned_cols=82 Identities=48% Similarity=0.968 Sum_probs=79.7
Q ss_pred ccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccccccchHHHHHhhHHHhhccCCCCC
Q 032310 58 SCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKSSADY 137 (143)
Q Consensus 58 ~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rLa~Hn~RRRk~~~~~ 137 (143)
+|||+||++||+.+|.||+||+||+.|++||+|+|+|+.+||||||++||+|+|||++|||||++|++||+|||+++.++
T Consensus 5 ~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~~~~ 84 (88)
T 1ul5_A 5 RCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVDK 84 (88)
T ss_dssp SCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCSS
T ss_pred eeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cC
Q 032310 138 HG 139 (143)
Q Consensus 138 ~~ 139 (143)
.+
T Consensus 85 ~~ 86 (88)
T 1ul5_A 85 GG 86 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=3.8e-35 Score=199.18 Aligned_cols=56 Identities=63% Similarity=1.196 Sum_probs=55.7
Q ss_pred ccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhhcccccccc
Q 032310 58 SCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHELSEFD 113 (143)
Q Consensus 58 ~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD 113 (143)
+|||+||++||+.+|.||+|||||+.|+|||+|+++|+.+||||||+|||+|+|||
T Consensus 5 ~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 5 CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp ECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred eeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 99999999999999999999999999999999999999999999999999999998
No 4
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=28.24 E-value=12 Score=29.80 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=28.7
Q ss_pred chhhhhhccchhhhcCCCeEeECChhhhHHHhhhhccc
Q 032310 71 AKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSRFHE 108 (143)
Q Consensus 71 ~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsrFH~ 108 (143)
+..++++++-|+.+- ++.+..++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEec
Confidence 345789999999876 4566677888899999997654
No 5
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=25.61 E-value=39 Score=21.48 Aligned_cols=17 Identities=29% Similarity=0.806 Sum_probs=11.8
Q ss_pred CCCCCCCCccccccCCCcc
Q 032310 48 AGAGGPTTFVSCQVENCRA 66 (143)
Q Consensus 48 ~g~~~p~~~~~CqVdGC~a 66 (143)
.|++.| ...|..+||+-
T Consensus 3 ~~~~~p--KqrC~apgCdh 19 (46)
T 2eqf_A 3 SGSSGP--KQRCRAPACDH 19 (46)
T ss_dssp SSCCCC--SCSCSSTTCCS
T ss_pred CCCCcc--cccccCccccc
Confidence 455544 45899999974
No 6
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=19.98 E-value=25 Score=23.70 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=21.0
Q ss_pred chhhhcCCCeEeECChhhhHHHhhhhccccc
Q 032310 80 VCDFHAKAPVVRVEGLAQRFCQQCSRFHELS 110 (143)
Q Consensus 80 VCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~ 110 (143)
.|+ ..+..++-.|....-|+ ||+-|.+.
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 477 55567778899999998 99766543
No 7
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=19.58 E-value=25 Score=21.09 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=6.0
Q ss_pred hccchhhhhhc
Q 032310 68 MTDAKKYHRRH 78 (143)
Q Consensus 68 Ls~~k~Y~rR~ 78 (143)
|..+|.||+||
T Consensus 19 lk~Ike~Hrr~ 29 (38)
T 2dt7_A 19 LKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhC
Confidence 44455666665
No 8
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=17.63 E-value=39 Score=24.25 Aligned_cols=37 Identities=27% Similarity=0.790 Sum_probs=21.2
Q ss_pred CCCCccccccCCCcchhccchhhhhhccchhhhcCCCeEeECChhhhHHHhhhh
Q 032310 52 GPTTFVSCQVENCRANMTDAKKYHRRHKVCDFHAKAPVVRVEGLAQRFCQQCSR 105 (143)
Q Consensus 52 ~p~~~~~CqVdGC~adLs~~k~Y~rR~rVCe~H~kA~~V~v~G~~qRFCQQCsr 105 (143)
++...+.|.. |...|.+-. | ..-|+| ..++||-+|+|
T Consensus 11 ~~~a~l~Ctl--C~erLEdtH-F----------VQCPsv----~~HkFCFpCsr 47 (93)
T 2cs3_A 11 ANSGPLCCTI--CHERLEDTH-F----------VQCPSV----PSHKFCFPCSR 47 (93)
T ss_dssp CSCCSCCCSS--SCSCCSSTT-S----------EECSSC----SSCEECHHHHH
T ss_pred CCCCeeEeec--chhhhccCc-e----------eeCCCc----cCCeeeccccH
Confidence 3445667776 666665420 1 122444 34799999984
No 9
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.34 E-value=81 Score=17.64 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=15.4
Q ss_pred CccccccCCCcchhccchhhhhhc
Q 032310 55 TFVSCQVENCRANMTDAKKYHRRH 78 (143)
Q Consensus 55 ~~~~CqVdGC~adLs~~k~Y~rR~ 78 (143)
.+..|.+++|+...+. +....+|
T Consensus 8 kp~~C~~~~C~k~F~~-~~~L~~H 30 (38)
T 2eln_A 8 ILLKCPTDGCDYSTPD-KYKLQAH 30 (38)
T ss_dssp CCEECSSSSCCCEESC-HHHHHHH
T ss_pred CCCCCCCCCCCCccCC-HHHHHHH
Confidence 4468999999987765 2334444
No 10
>2d8r_A THAP domain-containing protein 2; NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.16
Probab=15.91 E-value=72 Score=21.58 Aligned_cols=17 Identities=24% Similarity=0.774 Sum_probs=0.0
Q ss_pred CCCCCCCccc-cccCCCc
Q 032310 49 GAGGPTTFVS-CQVENCR 65 (143)
Q Consensus 49 g~~~p~~~~~-CqVdGC~ 65 (143)
|++.|..+.. |-|.||.
T Consensus 1 ~~~~~~~M~~~C~v~gC~ 18 (99)
T 2d8r_A 1 GSSGSSGMPTNCAAAGCA 18 (99)
T ss_dssp CCSCCCCCCCCCCSSSCC
T ss_pred CCCccCCCCCeeEeCCCC
Done!