BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032311
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein
OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1
Length = 140
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 101/140 (72%), Gaps = 7/140 (5%)
Query: 2 IACVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETF 58
I CVA+VG NNPL+IQ F+ + ++ LKLH+IVHCSLD+++++ + KK ++ +
Sbjct: 4 IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLP---SDMY 60
Query: 59 LGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVRNFFRRFHAAYIDAVSNPFHVP 117
LGLLYPTE+YKVYGYLTNTK+KFI+V D D++D+D++ FF+R +I+ SNPF+ P
Sbjct: 61 LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLKLFFKRLQTLFINTTSNPFYKP 120
Query: 118 GKKITSRTFAERVSTIVKSF 137
K+ S+ F + V+ +V S
Sbjct: 121 NSKVESKKFLQEVTNLVPSL 140
>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein
OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 98/136 (72%), Gaps = 3/136 (2%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119
Query: 119 KKITSRTFAERVSTIV 134
+I SR F V++++
Sbjct: 120 DRIQSRAFDTMVTSMM 135
>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus
musculus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 97/136 (71%), Gaps = 3/136 (2%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T + LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119
Query: 119 KKITSRTFAERVSTIV 134
+I SR F V++++
Sbjct: 120 DRIQSRAFDTMVTSMM 135
>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein
OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1
Length = 139
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 96/136 (70%), Gaps = 3/136 (2%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M CVAV+ +N PLYI+S T ++ LK H+ VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119
Query: 119 KKITSRTFAERVSTIV 134
I SR F V++++
Sbjct: 120 DPIQSRAFDNTVTSMM 135
>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein OS=Bos
taurus GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 97/136 (71%), Gaps = 3/136 (2%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M CVAV+ +N PLYI+S ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119
Query: 119 KKITSRTFAERVSTIV 134
+I SR F V++++
Sbjct: 120 DRIQSRAFDGMVTSMM 135
>sp|Q9UL33|TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein OS=Homo
sapiens GN=TRAPPC2L PE=1 SV=1
Length = 140
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 99/137 (72%), Gaps = 4/137 (2%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPG 119
Query: 119 KKI-TSRTFAERVSTIV 134
+I +SR F V++++
Sbjct: 120 DRIQSSRAFDNMVTSMM 136
>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein
OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 96/136 (70%), Gaps = 3/136 (2%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S ++ LK H+ VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H +Y D + NPF+ PG
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDIMCNPFYNPG 119
Query: 119 KKITSRTFAERVSTIV 134
+I SR F V++++
Sbjct: 120 DRIHSRAFDTMVNSMM 135
>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein
OS=Salmo salar GN=trappc2l PE=2 SV=1
Length = 139
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 93/136 (68%), Gaps = 3/136 (2%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S + LK H+ VH SLDVV+E+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-VPVQNELKFHYTVHTSLDVVEEKISAVGKAMADQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPG 118
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R+ FR+ H ++ D + NPF+ PG
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRSMFRKLHNSFTDVMCNPFYNPG 119
Query: 119 KKITSRTFAERVSTIV 134
I S+ F VS ++
Sbjct: 120 DTIQSKAFDSMVSAMM 135
>sp|Q5RBK9|TPC2L_PONAB Trafficking protein particle complex subunit 2-like protein
OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1
Length = 109
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 29/134 (21%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTENKLKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
LLYPTE+YK+ FR+ H +Y D + NPF+ PG +
Sbjct: 60 LLYPTEDYKM----------------------------FRKLHNSYTDVMCNPFYNPGDR 91
Query: 121 ITSRTFAERVSTIV 134
I SR F V++++
Sbjct: 92 IQSRAFDNMVTSMM 105
>sp|O13732|YDOC_SCHPO Uncharacterized protein C15A10.12c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC15A10.12c PE=4 SV=2
Length = 148
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 10/142 (7%)
Query: 5 VAVVGHQNNPLYIQSFTEADDAL--KLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLL 62
+++ G ++ LY++ + L + ++ SLDV+++ VN+ +++ N+ FLGLL
Sbjct: 9 LSIAGPKDEQLYLEIIDPKEKHLLARYQYLGELSLDVINDLVNDGERTS---NDCFLGLL 65
Query: 63 YPTENYKVYGYLTNTKVKFILVTT--DLDVRDADVRNFFRRFHAAYIDAVSNPFHV---P 117
E+ Y + +NTKVKFIL D V++ ++R RR + + AV NPF + P
Sbjct: 66 GVEEDISTYAFYSNTKVKFILAVKAPDYVVKETEIRQLLRRIYTIHTHAVCNPFSMDLTP 125
Query: 118 GKKITSRTFAERVSTIVKSFGL 139
TS F E + ++ + +
Sbjct: 126 ETLKTSIYFKESLHQLISDWNI 147
>sp|Q54RV6|TPPC2_DICDI Trafficking protein particle complex subunit 2 OS=Dictyostelium
discoideum GN=trappc2 PE=3 SV=1
Length = 133
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 7 VVGHQNNPLYIQSF---TEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLY 63
++G +NPLY F + + L +I H SLD+V+E V N +L ++
Sbjct: 8 IIGKNDNPLYEIEFPITVQKKETYVLQYIAHGSLDIVEEHVWKS-------NNMYLKIID 60
Query: 64 PTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITS 123
++ ++T +KF+L+ D DA ++NFF H Y+ + NPF+ K ITS
Sbjct: 61 KFNKVQISSFVTAGHIKFLLLHEKKD-EDA-IKNFFVEVHDLYLKILLNPFYEYNKPITS 118
Query: 124 RTFAERVSTI 133
F +V I
Sbjct: 119 TAFDAKVRKI 128
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 1 MIACVAVVGHQNNPLYIQSF----TEADDALKLH---HIVHCSLDVVDERVNNPKKSGPT 53
M A A++G ++NP+Y + D +L H IVH SLD+VD+ T
Sbjct: 1 MTAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQL-------QWT 53
Query: 54 LNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSN 112
N ++ + + Y+T + ++F+L+ + + AD ++ FF+ H YI + +
Sbjct: 54 SNAFYMKTIDQFHEMYISAYVTPSNMRFMLLHQN---QSADNIKLFFQELHELYIKTLMS 110
Query: 113 PFHVPGKKITSRTFAERVSTIVKSF 137
PF+ P + I S+ F +V +I + +
Sbjct: 111 PFYQPNQPIRSQAFDLKVRSIARRY 135
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V ++T ++FI++ DVR D ++NFF + YI NPF
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQEDGIKNFFTDVYDLYIKFAMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ P I S F +V + K LS
Sbjct: 115 YEPNSPIRSSAFDRKVQFLGKKHLLS 140
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V ++T ++FI++ DVR D ++NFF + YI NPF
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQEDGIKNFFTDVYDLYIKFAMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ P I S F +V + K LS
Sbjct: 115 YEPNSPIRSSAFDRKVQFLGKKHLLS 140
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris
GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V ++T ++FI++ D+R D ++NFF + YI NPF
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DIRQEDGIKNFFTDVYDLYIKFAMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ P I S F +V + K LS
Sbjct: 115 YEPNSPIRSSAFDRKVQFLGKKHLLS 140
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V ++T ++FI++ DVR D ++NFF + YI NPF
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQEDGIKNFFTDVYDLYIKFSMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ P I S F +V + K LS
Sbjct: 115 YEPNSPIRSSAFDRKVQFLGKKHLLS 140
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V ++T ++FI++ D+R D ++NFF + YI NPF
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DIRQEDGIKNFFTDVYDLYIKFSMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ P I S F +V + K LS
Sbjct: 115 YEPNSPIRSSAFDRKVQFLGKKHLLS 140
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 67/146 (45%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V ++T ++FI++ D+R D ++NFF + YI NPF
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DIRQEDGIKNFFTDVYDLYIKFSMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ P I S F +V + K LS
Sbjct: 115 YEPNSPIRSSAFDRKVQFLGKKHLLS 140
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 7 VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERVNNPKKSGPTLNETFL 59
+VGH +NP++ F DD L+ I H +LD+VDE + N +L
Sbjct: 9 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM-------WLSNNMYL 61
Query: 60 GLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPFHVPG 118
+ + V ++T ++FI++ DVR D ++NFF + YI NPF+ P
Sbjct: 62 KTVDKFNEWFVSAFVTAGHMRFIMLH---DVRQEDGIKNFFTDVYDLYIKFAMNPFYEPN 118
Query: 119 KKITSRTFAERVSTIVKSFGLS 140
I S F +V + K LS
Sbjct: 119 SPIRSSAFDRKVQFLGKKHLLS 140
>sp|A7RVK7|TPPC2_NEMVE Probable trafficking protein particle complex subunit 2
OS=Nematostella vectensis GN=v1g94938 PE=3 SV=1
Length = 153
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 17/139 (12%)
Query: 6 AVVGHQNNPLYIQSFTE-----ADDALKLHH-IVHCSLDVVDERVNNPK----KSGPTLN 55
A+VGH +NP+Y + F + ++D L+ IVH +LD+VDE + KS N
Sbjct: 8 AIVGHYDNPVYEKEFNQQMKMDSNDHRHLNQFIVHAALDLVDESMWGTTGMYLKSVDKFN 67
Query: 56 ETFLGLLYPTENYKV---YGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVS 111
E F+ P ++ + + + ++F+++ DV++ D ++NFF + +I +
Sbjct: 68 EWFVSAFDPPLSWIIDPQFFLDLTSWMRFMMLH---DVKNDDGIKNFFSDVYETFIKVLM 124
Query: 112 NPFHVPGKKITSRTFAERV 130
NPF+ KI S F ++V
Sbjct: 125 NPFYEINSKIKSANFDKKV 143
>sp|O02173|TPPC2_CAEEL Probable trafficking protein particle complex subunit 2
OS=Caenorhabditis elegans GN=sedl-1 PE=1 SV=1
Length = 141
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 6 AVVGHQNNPLYIQSFTEADDALKL--------HHIVHCSLDVVDERVNNPKKSGPTLNET 57
A++GH + P++ F + K H+I H +LD+VDE T ++
Sbjct: 9 AIIGHCDQPIFEMDFPVGEKKTKESEGTRHLNHYIGHAALDIVDEH-------ALTTSQM 61
Query: 58 FLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVP 117
+L ++ + V ++T ++++FI++ T D ++ FF+ + YI NPF+
Sbjct: 62 YLKMVDKFNEWYVSAFVTASRIRFIMLHTHR--ADEGIKQFFQEMYETYIKHAMNPFYEI 119
Query: 118 GKKITSRTFAERVS 131
I S F ++ +
Sbjct: 120 DDVIESPAFEQKAT 133
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus
GN=Trappc2 PE=3 SV=1
Length = 140
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSF-----TEADDALKL--HHIVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F TE+ D + I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKTESKDEHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V ++T ++ I++ DVR D ++NFF + YI NPF
Sbjct: 69 EWF-----------VSAFVTAGHMRLIMLH---DVRQEDGIKNFFTDVYDLYIKFAMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ P I S F +V + K LS
Sbjct: 115 YEPNSPIRSTAFERKVQFLGKKHLLS 140
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSF-----TEA-DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F TE+ DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPQGKTESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V ++T ++FI++ DVR D ++NFF + YI NPF
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQEDGIKNFFNEAYDLYIKFAMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ + S F ++ + K LS
Sbjct: 115 YEINSPLRSTAFDRKIQFLGKKHLLS 140
>sp|Q9VUZ1|TPPC2_DROME Probable trafficking protein particle complex subunit 2
OS=Drosophila melanogaster GN=CG5161 PE=2 SV=2
Length = 139
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 7 VVGHQNNPLYIQSFTEADDALK-------LHHIVHCSLDVVDER----VNNPKKSGPTLN 55
+VG +NP+Y + F+ + L+ I H +LD+VDE N KS N
Sbjct: 8 IVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLKSIDRFN 67
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFH 115
+ F+ ++T ++++FI+V + + D ++NFF + YI N F+
Sbjct: 68 QWFVS-----------AFITASQIRFIIVHDNKN--DEGIKNFFNEMYDTYIKNSMNAFY 114
Query: 116 VPGKKITSRTFAERVSTIVKSFGLS 140
I S F ++ + + LS
Sbjct: 115 RINTPIKSPMFEKKSEIFGRKYLLS 139
>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio
GN=trappc2 PE=2 SV=1
Length = 140
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 MVGHHDNPVFELEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V ++T ++FI++ DVR D ++NFF + Y+ NPF
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQEDGIKNFFNDVYDLYVKFAMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ I S F +V + K LS
Sbjct: 115 YEVNAPIRSTAFERKVQFLGKKHLLS 140
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 26/146 (17%)
Query: 7 VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD-VRNFFRRFHAAYIDAVSNPF 114
E F V + ++FI++ DVR D ++NFF + YI NPF
Sbjct: 69 EWF-----------VSAFAFVLHMRFIMLH---DVRQEDGIKNFFNDVYDLYIKFAMNPF 114
Query: 115 HVPGKKITSRTFAERVSTIVKSFGLS 140
+ I S F +V + K LS
Sbjct: 115 YELNSPIRSSAFERKVQFLGKKHLLS 140
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHH--------IVHCSLDVVDE---RVNNPKK 49
M A++G ++NP+Y FT A++ I+H SLD+V++ ++N +
Sbjct: 1 MPQYFAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVEDLQWQINPTSQ 60
Query: 50 ----------------SGPTLNET---FLGLLYPTENYKVYGYLTNTKVKFILV-----T 85
+N T +LG + + Y++ + +KF+++
Sbjct: 61 LNGNGGNGSNGGGGFLRSRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSAN 120
Query: 86 TDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVK 135
+ + + D ++R+F++ H Y+ + NPF+ I S F RV T+ +
Sbjct: 121 SSVVIDDNNMRSFYQEVHELYVKTLMNPFYKITDPIRSPAFDSRVRTLAR 170
>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium
discoideum GN=trappc1-1 PE=3 SV=1
Length = 142
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 63 YPTENYKVYGYLTNTKVKFILVTTD--LDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKK 120
Y T YK++ Y T + +KFI+++ D+RD D++ + + Y+ + NP + G
Sbjct: 64 YKTSTYKLHYYETLSCIKFIIMSDPNVPDLRD-DLKKIYSQIFVEYV--IKNPIYKHGTT 120
Query: 121 ITSRTFAERVSTIVKS 136
+ TF +++ +K
Sbjct: 121 VKCDTFINQLNLYLKQ 136
>sp|P0C588|CNNM4_RAT Metal transporter CNNM4 OS=Rattus norvegicus GN=Cnnm4 PE=1 SV=1
Length = 772
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 19 SFTEADDALKLHHIVHC---SLDVVDER-VNNPKKSGPTLNETFLGLLYPTENYKVYGYL 74
SFTE DDA +H+ +C + D+V +R VN + + + L +EN K+Y
Sbjct: 90 SFTEVDDAETVHNSTNCLELTKDLVVQRLVNVSRGNTSGMLVVITKFLRRSENMKLYALC 149
Query: 75 TNTK 78
T T+
Sbjct: 150 TRTR 153
>sp|P00078|CYC_CRIFA Cytochrome c OS=Crithidia fasciculata PE=1 SV=2
Length = 114
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 38 DVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTK 78
DV+D + NPKK P +F G+ P E V YL K
Sbjct: 73 DVLDVYLENPKKFMPGTKMSFAGMKKPQERADVIAYLETLK 113
>sp|P00077|CYC_CRION Cytochrome c OS=Crithidia oncopelti PE=1 SV=2
Length = 113
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 38 DVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTK 78
+V+D + NPKK P +F G+ P E + YL N K
Sbjct: 73 EVLDVYLENPKKFMPGTKMSFAGIKKPQERADLIAYLENLK 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,724,555
Number of Sequences: 539616
Number of extensions: 2065510
Number of successful extensions: 4254
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4190
Number of HSP's gapped (non-prelim): 37
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)