Query 032311
Match_columns 143
No_of_seqs 122 out of 614
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_A Sedlin, trafficking pro 100.0 6.5E-42 2.2E-46 245.5 17.4 129 2-139 6-141 (142)
2 2j3t_C Trafficking protein par 100.0 2.3E-39 7.7E-44 233.0 14.6 130 1-141 2-141 (145)
3 3cue_A Transport protein parti 100.0 2.8E-35 9.7E-40 222.1 18.3 136 1-138 2-219 (219)
4 3cue_C Transport protein parti 100.0 4.4E-36 1.5E-40 218.7 11.4 128 1-138 2-157 (159)
5 2j3t_D Trafficking protein par 100.0 2.2E-35 7.5E-40 223.4 13.1 124 6-140 85-212 (219)
6 3pr6_A Trapp-associated protei 100.0 3E-34 1E-38 207.9 14.9 114 3-119 11-134 (162)
7 2vgl_S AP-2 complex subunit si 96.5 0.12 4E-06 35.7 12.6 95 1-112 1-97 (142)
8 1w63_Q Adapter-related protein 96.3 0.17 5.9E-06 35.7 12.9 95 1-112 1-97 (158)
9 2nut_C Vesicle-trafficking pro 95.5 0.48 1.6E-05 34.4 13.5 75 63-139 55-129 (196)
10 3kyq_A YKT6, synaptobrevin hom 94.8 0.66 2.3E-05 34.0 11.6 120 2-138 4-132 (199)
11 2vgl_M AP-2 complex subunit MU 93.6 1.2 4.1E-05 36.2 11.9 95 1-112 1-95 (435)
12 2vx8_A Nucleoporin-like protei 91.7 2.1 7.3E-05 30.5 9.7 117 1-138 44-161 (169)
13 4b93_A Vesicle-associated memb 91.5 2.9 9.9E-05 30.1 12.1 119 1-139 2-120 (189)
14 3tjz_C Coatomer subunit zeta-1 90.4 3.3 0.00011 28.9 13.0 90 1-110 12-105 (153)
15 2j3t_D Trafficking protein par 90.0 0.23 8E-06 37.2 3.4 21 2-22 3-23 (219)
16 1w63_M Adaptor-related protein 86.9 5.4 0.00019 32.1 9.8 93 1-110 2-95 (423)
17 2wx3_A MRNA-decapping enzyme 1 69.7 3.2 0.00011 23.8 2.3 15 96-110 28-42 (51)
18 4afi_A AP-3 complex subunit de 64.8 34 0.0012 24.2 12.8 118 1-139 54-172 (173)
19 3bw6_A Synaptobrevin homolog Y 64.5 30 0.001 23.5 13.4 74 63-138 63-137 (144)
20 2wx4_A DCP1, decapping protein 57.7 3.3 0.00011 23.2 0.8 14 97-110 27-40 (46)
21 4er8_A Tnparep for protein; pr 54.3 44 0.0015 23.1 6.5 67 66-135 46-117 (165)
22 1ka8_A Putative P4-specific DN 51.0 27 0.00091 22.7 4.5 37 100-139 35-72 (100)
23 3bua_E HSNM1B, DNA cross-LINK 49.4 4.4 0.00015 21.1 0.4 30 104-133 5-34 (36)
24 1skv_A ORF D-63, hypothetical 28.8 58 0.002 19.5 3.0 23 92-114 15-37 (69)
25 3t12_B Gliding protein MGLB; G 27.9 1.4E+02 0.0048 20.1 12.6 75 4-87 28-108 (136)
26 2jtt_C Calcyclin-binding prote 23.6 25 0.00084 18.4 0.7 13 92-104 5-17 (35)
27 2jsx_A Protein NAPD; TAT, proo 23.1 82 0.0028 19.9 3.3 36 65-103 29-64 (95)
28 2x5c_A Hypothetical protein OR 23.1 1.3E+02 0.0043 19.4 4.1 39 67-105 61-103 (131)
29 1bm4_A Protein (moloney murine 22.6 88 0.003 15.9 2.8 19 91-109 11-29 (32)
30 2jqq_A Conserved oligomeric go 22.2 42 0.0015 24.4 1.9 46 91-136 13-69 (204)
31 3odn_A Dally-like protein; alp 20.8 2.3E+02 0.008 23.5 6.3 45 91-141 136-180 (506)
32 3eik_A Tata-box-binding protei 20.8 1.6E+02 0.0054 21.6 4.8 51 56-110 166-216 (218)
33 1bl1_A Parathyroid hormone rec 20.2 32 0.0011 17.5 0.7 13 95-107 13-25 (31)
No 1
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=100.00 E-value=6.5e-42 Score=245.51 Aligned_cols=129 Identities=27% Similarity=0.455 Sum_probs=117.4
Q ss_pred EEEEEEEeCCCCeeEEecCCCc-----hhH--HHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE
Q 032311 2 IACVAVVGHQNNPLYIQSFTEA-----DDA--LKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL 74 (143)
Q Consensus 2 i~~l~Ii~~~~~ply~~~~~~~-----~~~--l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~ 74 (143)
++|++||||+|+|||+++|++. +++ +..++++|++||+++++.|.. .++|||.++++++|+||||+
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~-------~~~~l~~~~~~~~y~v~~~~ 78 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS-------NNMYLKTVDKFNEWFVSAFV 78 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC-------SCSEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCC-------CcceeEeeecccceEEEEEE
Confidence 5999999999999999999764 233 445688999999999998731 47999999999999999999
Q ss_pred ecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHhCC
Q 032311 75 TNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGL 139 (143)
Q Consensus 75 T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~~ 139 (143)
|+||+|||++++++ +++++|++|++||++|+++++||||++++||+|+.||++|++++++|.+
T Consensus 79 T~tg~Kfvl~~d~~--~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l~ 141 (142)
T 2j3w_A 79 TAGHMRFIMLHDVR--QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLL 141 (142)
T ss_dssp CTTCCEEEEEESSC--CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred cCCCcEEEEEeCCC--CcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHHhcc
Confidence 99999999999984 5999999999999999999999999999999999999999999999964
No 2
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=100.00 E-value=2.3e-39 Score=233.01 Aligned_cols=130 Identities=18% Similarity=0.270 Sum_probs=112.2
Q ss_pred CEEEEEEEeCCCCeeEEecCCCc-------hhHHH-HHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEE
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEA-------DDALK-LHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG 72 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~-------~~~l~-l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~ 72 (143)
|++|++||||+|+|||.++|+.. +++.+ +++++| ||+.|.+++++.. +.+++.++ ++++|++||
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~-Sl~~i~~klsp~~------~~~~~~~~-~t~~ykl~~ 73 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLF-SIRSFVSKMSPLD------MKDGFLSF-QTSRYKLHY 73 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHH-HHHHHHHHHCSSC------CSSCEEEE-ECSSCEEEE
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHH-HHHHHHHHhCCCC------CCCceEEE-ecCCEEEEE
Confidence 58999999999999999999642 34455 455666 8999999988642 23556555 899999999
Q ss_pred EEecCceEEEEEEcCCCcCcHHHHHHHHHHH-HHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Q 032311 73 YLTNTKVKFILVTTDLDVRDADVRNFFRRFH-AAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKSFGLSS 141 (143)
Q Consensus 73 y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~-~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~~~~~~ 141 (143)
|+|+||+||||++++ +++++|++|++|| ++|++|| |||||++++||+|+.||++|+++++++..++
T Consensus 74 ~~T~TgiKFvl~td~---~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~~f~ 141 (145)
T 2j3t_C 74 YETPTGIKVVMNTDL---GVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLPFFS 141 (145)
T ss_dssp EECTTSCEEEEEECT---TCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTSTTCC
T ss_pred EEcCCCCEEEEEecC---CcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCccch
Confidence 999999999999998 7889999999999 8999988 8999999999999999999999999986543
No 3
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=222.14 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=113.3
Q ss_pred CEEEEEEEeCCCCeeEEecCCCc------hhHHHHHHHHHHHHHHHHhhcCCCCCCC-----------------------
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEA------DDALKLHHIVHCSLDVVDERVNNPKKSG----------------------- 51 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~------~~~l~l~~~~~~sLd~i~~~~~~~~~~~----------------------- 51 (143)
+|++|+||||+|++||.|+|... ||++.+..++| +|++|..++.|.....
T Consensus 2 ~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lh-sv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (219)
T 3cue_A 2 AIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLH-GVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRS 80 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHH-HHHHHHHHTCCSCC-----------CCCCCSCCC-----
T ss_pred eeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhH-HHHHHHhhcCCCccccccccccccccccccccccccccc
Confidence 58999999999999999999743 78899999999 9999999999853100
Q ss_pred ----------------------CC---------CcccccccceecCCeEEEEEEecCceEEEEEEcCCC-----------
Q 032311 52 ----------------------PT---------LNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLD----------- 89 (143)
Q Consensus 52 ----------------------~~---------~~~~ylg~l~~~~~~~v~~y~T~Tg~Kfvl~~~~~~----------- 89 (143)
++ -....|. +.++++|++|||+|+||+||||++++..
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~-~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~ 159 (219)
T 3cue_A 81 DTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLR-QLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTD 159 (219)
T ss_dssp -----------------------CCSCCSCCCCCCSSSCC-EEEESSCEEEEEECTTSCEEEEEESSCC-----------
T ss_pred ccccccccccccccccccccccccccccccccccCCCceE-EEEeCCEEEEEEEcCCCCEEEEEecCCCccccccccccc
Confidence 00 0112332 3579999999999999999999999742
Q ss_pred ----------cCcHHHHHHHHHHHHHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 032311 90 ----------VRDADVRNFFRRFHAAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKSFG 138 (143)
Q Consensus 90 ----------~~~~~i~~~f~~i~~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~~~ 138 (143)
++|+++|++|++||++|++|| |||||.++|||+|+.||++|+++++++.
T Consensus 160 ~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~~ 219 (219)
T 3cue_A 160 KPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ 219 (219)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHHC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence 112889999999999999988 7999999999999999999999999863
No 4
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-36 Score=218.74 Aligned_cols=128 Identities=18% Similarity=0.267 Sum_probs=108.4
Q ss_pred CEEEEEEEeCCCCeeEEecCCC-------------chhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCC
Q 032311 1 MIACVAVVGHQNNPLYIQSFTE-------------ADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTEN 67 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~-------------~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~ 67 (143)
+|+||+||||+|+|||.++|.. .+++.++.+.++.||+.|.+++++... .+.+ ..+++++
T Consensus 2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~-----~~~f--~~~~T~~ 74 (159)
T 3cue_C 2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSV-----KNDI--RSISTGK 74 (159)
T ss_dssp CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSS-----CCCE--EEEECSS
T ss_pred eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCC-----CCCe--EEEeeCC
Confidence 5899999999999999999953 144566665445599999999987421 2344 3468999
Q ss_pred eEEEEEEecCceEEEEEEcCCCcCcHHHHHHHHHHHH-HHHHhh-hCC-----CCCCC--------CCCcchhHHHHHHH
Q 032311 68 YKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHA-AYIDAV-SNP-----FHVPG--------KKITSRTFAERVST 132 (143)
Q Consensus 68 ~~v~~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~-~Y~~~v-~NP-----Fy~~~--------~~I~s~~F~~~v~~ 132 (143)
|++|||+|+||+||||++|+ ++.++|++|++||+ +|++|| ||| ||+++ +||+|++||++|++
T Consensus 75 ykl~~~eT~TgiKFvl~td~---~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~ 151 (159)
T 3cue_C 75 YRVHTYCTASGLWFVLLSDF---KQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLES 151 (159)
T ss_dssp CBEEEECCSSCCEEEEECCS---SSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHH
T ss_pred EEEEEEEeCCCCEEEEEeCC---CcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHH
Confidence 99999999999999999998 79999999999997 999988 999 99999 99999999999999
Q ss_pred HHHHhC
Q 032311 133 IVKSFG 138 (143)
Q Consensus 133 ~~~~~~ 138 (143)
+++++.
T Consensus 152 ~~~~~~ 157 (159)
T 3cue_C 152 FLAPMV 157 (159)
T ss_dssp HTSCC-
T ss_pred HHHhcc
Confidence 998764
No 5
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=100.00 E-value=2.2e-35 Score=223.43 Aligned_cols=124 Identities=21% Similarity=0.322 Sum_probs=109.9
Q ss_pred EEEeCCCCeeEEecCCCc---hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceEEE
Q 032311 6 AVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI 82 (143)
Q Consensus 6 ~Ii~~~~~ply~~~~~~~---~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~Kfv 82 (143)
.|+||+|+|||++.|.+. ++.+.+.+++| |||+|+++++|..++ ..+. ..++++|++|||+|+||+|||
T Consensus 85 ~iigk~N~PLyir~f~~~l~sn~~L~lag~lh-SLd~i~~klsp~~~s------~g~~-~~~T~~ykl~~y~T~TgiKFV 156 (219)
T 2j3t_D 85 YLGNPANYPVSIRFGRPRLTSNEKLMLASMFH-SLFAIGSQLSPEQGS------SGIE-MLETDTFKLHCYQTLTGIKFV 156 (219)
T ss_dssp HTTCGGGCSEEEEEECCCCCHHHHHHHHHHHH-HHHHHHHHTCSSSSC------CSCS-EEEESSCEEEEEECTTSCEEE
T ss_pred eeecCCCCceEEEecCCCCChhHHHHHHHHHH-HHHHHHHHhCCCCCC------CCee-EEecCceEEEEEEcCCCCEEE
Confidence 478999999999999866 56677888999 999999999975322 2343 358999999999999999999
Q ss_pred EEEcCCCcCcHHHHHHHHHHHHHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHHhCCC
Q 032311 83 LVTTDLDVRDADVRNFFRRFHAAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKSFGLS 140 (143)
Q Consensus 83 l~~~~~~~~~~~i~~~f~~i~~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~~~~~ 140 (143)
|++++ +++++|++|++||++|+++| |||||++++||+|+.||++|+++++++...
T Consensus 157 Lltd~---~~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~~~~ 212 (219)
T 2j3t_D 157 VLADP---RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKA 212 (219)
T ss_dssp EEECT---TCCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHHTTS
T ss_pred EEecC---CchHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHhhcc
Confidence 99998 89999999999999999997 899999999999999999999999999764
No 6
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-34 Score=207.92 Aligned_cols=114 Identities=22% Similarity=0.385 Sum_probs=97.9
Q ss_pred EEEEEEeCCCCeeEEecCCCc----hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE-ecC
Q 032311 3 ACVAVVGHQNNPLYIQSFTEA----DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL-TNT 77 (143)
Q Consensus 3 ~~l~Ii~~~~~ply~~~~~~~----~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~-T~T 77 (143)
.+++||||+|.|||++.++.. +++|+++|++|+|||+||+++..+ ++++ .++|||+|+++++++||||+ |+|
T Consensus 11 ~FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~--~s~~-~~~~LglL~~~e~~~VYGy~iTnt 87 (162)
T 3pr6_A 11 CFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEW--HSLD-SKPLLKSIFQLEGVSVFAMLIKQT 87 (162)
T ss_dssp SEEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCC--CCSS-SSCCCEEEEEETTEEEEEEECTTT
T ss_pred eEEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhc--cccc-cccccceEeecCCeEEEEEEEcCC
Confidence 378999999999999999765 467999999999999999999432 2222 25799999999999999998 999
Q ss_pred ceEEEEEEcCC---CcCc--HHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 032311 78 KVKFILVTTDL---DVRD--ADVRNFFRRFHAAYIDAVSNPFHVPGK 119 (143)
Q Consensus 78 g~Kfvl~~~~~---~~~~--~~i~~~f~~i~~~Y~~~v~NPFy~~~~ 119 (143)
|+|||++++.+ +.+| ++||++|++||++|++++|||||.+++
T Consensus 88 ~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l~NPFy~~~d 134 (162)
T 3pr6_A 88 GLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLLVSGD 134 (162)
T ss_dssp CCEEEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTGGGSC
T ss_pred ceEEEEEEccCCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999999863 3567 899999999999999999999999884
No 7
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=96.46 E-value=0.12 Score=35.75 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=60.4
Q ss_pred CEEEEEEEeCCCCeeEEecCCCc--hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCc
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEA--DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTK 78 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~--~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg 78 (143)
||.++.|+|++|.++..|-|.+. +...++.-.++ .++.... .. .. .+...++++ +.|..-.+
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~-------~~v~~~~-~~---~~----~~~~~~~~~-~vy~~~~~ 64 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVH-------AVVTVRD-AK---HT----NFVEFRNFK-IIYRRYAG 64 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHH-------HHHHTCC-TT---SC----SEEEETTEE-EEEEEETT
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHH-------HHHhcCC-CC---CC----CEEEECCEE-EEEEEECC
Confidence 89999999999999999988743 22233222222 2222111 00 11 223455544 56777788
Q ss_pred eEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhC
Q 032311 79 VKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSN 112 (143)
Q Consensus 79 ~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~N 112 (143)
+-|+++++. +.++-.+-.+++.+.++.-+|..|
T Consensus 65 Lyfv~~~~~-~~N~l~~le~L~~~ve~l~~yf~~ 97 (142)
T 2vgl_S 65 LYFCICVDV-NDNNLAYLEAIHNFVEVLNEYFHN 97 (142)
T ss_dssp EEEEEEECT-TSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999985 234555677888888888888654
No 8
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.28 E-value=0.17 Score=35.68 Aligned_cols=95 Identities=11% Similarity=0.073 Sum_probs=59.4
Q ss_pred CEEEEEEEeCCCCeeEEecCCCchh--HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCc
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEADD--ALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTK 78 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~~~--~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg 78 (143)
||.++.|+|++|.++..|.|..... ..++.--++ .++...... ..+ +...++++ +.|..-.+
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~-------~~i~~~~~~----~~~----~i~~~~~~-~vy~~~~~ 64 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELM-------QVVLARKPK----MCS----FLEWRDLK-VVYKRYAS 64 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHH-------HHHHTSCSS----SCS----EEEETTEE-EEEEEETT
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHH-------HHHhccCCC----CCC----eEEECCEE-EEEEEECC
Confidence 8999999999999999998875422 222221122 222211100 112 23455554 56777888
Q ss_pred eEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhC
Q 032311 79 VKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSN 112 (143)
Q Consensus 79 ~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~N 112 (143)
+-|+++++. +.++-.+-.+++.+.++.-+|..|
T Consensus 65 Lyfv~~~~~-~~Nel~~le~L~~~vevl~~yf~~ 97 (158)
T 1w63_Q 65 LYFCCAIEG-QDNELITLELIHRYVELLDKYFGS 97 (158)
T ss_dssp EEEEEEECS-SSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEEecC-CCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999985 234555677778877877777655
No 9
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=95.47 E-value=0.48 Score=34.40 Aligned_cols=75 Identities=7% Similarity=0.115 Sum_probs=55.5
Q ss_pred eecCCeEEEEEEecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHhCC
Q 032311 63 YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGL 139 (143)
Q Consensus 63 ~~~~~~~v~~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~~ 139 (143)
++.++|.+| |....|+-++++++. .+...-.-.||++|.+.|....-+-.-....|..-..|+..++++++.|+.
T Consensus 55 ~~~~~y~fh-y~~~~gl~~l~i~d~-~yp~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~~ 129 (196)
T 2nut_C 55 LEAGAMTFH-YIIEQGVCYLVLCEA-AFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYID 129 (196)
T ss_dssp EEETTEEEE-EEEETTEEEEEEEET-TSCHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTTSC
T ss_pred EEeCCEEEE-EEeCCCeEEEEEEcC-CcchHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHhcC
Confidence 467889998 888999999999996 344556678899999888775533222223455556899999999999953
No 10
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=94.82 E-value=0.66 Score=34.00 Aligned_cols=120 Identities=6% Similarity=0.143 Sum_probs=72.0
Q ss_pred EEEEEEEeCCCC-eeEEe-cCCCc-----hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEE
Q 032311 2 IACVAVVGHQNN-PLYIQ-SFTEA-----DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL 74 (143)
Q Consensus 2 i~~l~Ii~~~~~-ply~~-~~~~~-----~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~ 74 (143)
|+++.|+-+++. |+... .++-. ...-.-.|+.. +-..+.+++.+. .. .-.+.++|.+|+|.
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f-~~r~il~r~~~~-------~r----~s~~~~~y~fH~y~ 71 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTF-TSQLIVERSAKG-------SR----ASVKEQEYLCHVYV 71 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHH-HHHHHHHTSCTT-------EE----EEEECSSEEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHH-HHHHHHhcCCCC-------Ce----EEEEeCCEEEEEEE
Confidence 788888876544 44443 22211 22222344555 555666665431 11 23467899999999
Q ss_pred ecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh-hCCCC-CCCCCCcchhHHHHHHHHHHHhC
Q 032311 75 TNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV-SNPFH-VPGKKITSRTFAERVSTIVKSFG 138 (143)
Q Consensus 75 T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v-~NPFy-~~~~~I~s~~F~~~v~~~~~~~~ 138 (143)
...|+-++++++. .....-.-.+|.+|.+.|.... .+-.- ....|+. | ..+++++++|+
T Consensus 72 ~~~gl~yl~itd~-~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~---f-~~l~~~m~~Y~ 132 (199)
T 3kyq_A 72 RSDSLAGVVIADS-EYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH---Y-TALDGHLSRYQ 132 (199)
T ss_dssp CTTSEEEEEEEET-TSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCC---C-CTHHHHHHHTT
T ss_pred ecCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHhccchhhhcccccccc---c-HHHHHHHHHhC
Confidence 9999999999996 3445566788999998877654 22111 1123332 4 45666777774
No 11
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=93.61 E-value=1.2 Score=36.15 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=61.3
Q ss_pred CEEEEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceE
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK 80 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~K 80 (143)
||.++.|+|++|.++..|.|...-. + ..++.+...+...... . .. .+...+++ .+.|....++-
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~--~------~~~~~f~~~v~~~~~~--~-~~----~ii~~~~~-~~vy~~~~~Ly 64 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIG--R------NAVDAFRVNVIHARQQ--V-RS----PVTNIART-SFFHVKRSNIW 64 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCC--H------HHHHHHHHHTTTCSSC--C-CC----SEEEETTE-EEEEEEETTEE
T ss_pred CeEEEEEECCCCCEEEEEecCCCCC--h------hHHHHHHHHHhccccC--C-CC----CEEEECCE-EEEEEEECCEE
Confidence 8999999999999999998875311 1 1234455555432111 0 11 23345554 46778888899
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhC
Q 032311 81 FILVTTDLDVRDADVRNFFRRFHAAYIDAVSN 112 (143)
Q Consensus 81 fvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~N 112 (143)
|+++++.. .++-.+-++++.+.++.-+|..|
T Consensus 65 fv~~~~~~-~n~l~~le~L~~~v~vl~~yf~~ 95 (435)
T 2vgl_M 65 LAAVTKQN-VNAAMVFEFLYKMCDVMAAYFGK 95 (435)
T ss_dssp EEEEESSC-CCHHHHHHHHHHHHHHHHHHHSS
T ss_pred EEEEecCC-CCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999852 24555677777777777777654
No 12
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=91.73 E-value=2.1 Score=30.46 Aligned_cols=117 Identities=14% Similarity=0.224 Sum_probs=67.0
Q ss_pred CEEEEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceE
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK 80 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~K 80 (143)
|....++|.|.+.+|....-...+ .+ . -...+-+++.+. . .. .-++.++|.+|.+.. .|+-
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~gn--f~--~----iak~ll~kl~~~---~---~r----~s~~~~~y~fHyl~~-ngl~ 104 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGGN--FL--E----VTEQILAKIPSE---N---NK----LTYSHGNYLFHYICQ-DRIV 104 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCBS--HH--H----HHHHHHTTSCSS---C---EE----EEEEETTEEEEEEEE-TTEE
T ss_pred CceEEEEEEcCCEEEEEeccCCCC--HH--H----HHHHHHhhCCCC---C---Cc----eEEEECCEEEEEEEE-CCEE
Confidence 666778889988888776332221 11 1 123334444321 0 11 235678999999885 5999
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcc-hhHHHHHHHHHHHhC
Q 032311 81 FILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITS-RTFAERVSTIVKSFG 138 (143)
Q Consensus 81 fvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s-~~F~~~v~~~~~~~~ 138 (143)
|++++|. ...-.-.-.||++|.+.|.+...+-. ....|..- ..|+..+++..+.|+
T Consensus 105 yl~I~D~-~yp~r~AF~fLedI~~eF~~~y~~~~-~~a~pysf~~eF~~~Lk~~~~~~~ 161 (169)
T 2vx8_A 105 YLCITDD-DFERSRAFSFLNEVKKRFQTTYGSRA-QTALPYAMNSEFSSVLAAQLKHHS 161 (169)
T ss_dssp EEEEEET-TSCHHHHHHHHHHHHHHHHHHHTTGG-GTCCTTTTHHHHHHHHSCC-----
T ss_pred EEEEEcc-ccchHHHHHHHHHHHHHHHHHhhhhh-hccCCcchhHHHHHHHHHHHHHhc
Confidence 9999996 34455678888999887777542211 11123322 367777776666664
No 13
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=91.51 E-value=2.9 Score=30.11 Aligned_cols=119 Identities=14% Similarity=0.272 Sum_probs=71.2
Q ss_pred CEEEEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceE
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK 80 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~K 80 (143)
|-...+.|.+.+.+|-......++- .. + +-.+++ ++.+ . +. +.-+..++|.+| |....|+-
T Consensus 2 M~ilYa~VArg~~iLae~t~~~gnf-~~---i---a~~iL~-kip~---~-----~~--k~s~~~~~y~fH-yl~~~gl~ 62 (189)
T 4b93_A 2 MAILFAVVARGTTILAKHAWCGGNF-LE---V---TEQILA-KIPS---E-----NN--KLTYSHGNYLFH-YICQDRIV 62 (189)
T ss_dssp CSEEEEEEEETTEEEEEEESSEECH-HH---H---HHHHHT-TCCS---S-----SE--EEEEEETTEEEE-EEEETTEE
T ss_pred CceEEEEEEeCCEEEEeCCCCCCCH-HH---H---HHHHHH-hCCC---C-----CC--eEEEEECCEEEE-EEEeCCeE
Confidence 4455567778777776654333221 11 1 222333 2221 1 11 133578899999 88889999
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHhCC
Q 032311 81 FILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGL 139 (143)
Q Consensus 81 fvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~~ 139 (143)
++++++. .+.....-.||.+|.+.|....-+.-.....+-....|+..+++.++.|+.
T Consensus 63 yl~i~d~-~yp~r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d 120 (189)
T 4b93_A 63 YLCITDD-DFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 120 (189)
T ss_dssp EEEEEET-TSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHC
T ss_pred EEEEEcC-ccCHHHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhc
Confidence 9999996 344555678889998777664422111111112335799999999999854
No 14
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=90.42 E-value=3.3 Score=28.89 Aligned_cols=90 Identities=4% Similarity=0.194 Sum_probs=60.2
Q ss_pred CEEEEEEEeCCCCeeEEecCCCc----hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEec
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEA----DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTN 76 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~----~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~ 76 (143)
||.++.|+|++|.++..|-|... +++.++.--++ .+ + .. . +. .+...++++ ..|..-
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~-~~--~----~r---~----~~----~i~~~~~~~-~vy~~~ 72 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIF-NK--T----HR---T----DS----EIALLEGLT-VVYKSS 72 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHH-HH--H----SS---C----CC----CEEEETTEE-EEEEEC
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHH-HH--H----hC---C----CC----CEEEECCEE-EEEEEE
Confidence 89999999999999999988752 22333332333 11 1 11 1 11 122345554 578888
Q ss_pred CceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh
Q 032311 77 TKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV 110 (143)
Q Consensus 77 Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v 110 (143)
.++-|+++++.. .++-.+-++++.+.++.-+|.
T Consensus 73 ~~Lyfv~~~~~~-eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 73 IDLYFYVIGSSY-ENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp SSCEEEEEEETT-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCC-CChHHHHHHHHHHHHHHHHHh
Confidence 889999999862 355567888899888888887
No 15
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=90.04 E-value=0.23 Score=37.17 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=19.2
Q ss_pred EEEEEEEeCCCCeeEEecCCC
Q 032311 2 IACVAVVGHQNNPLYIQSFTE 22 (143)
Q Consensus 2 i~~l~Ii~~~~~ply~~~~~~ 22 (143)
||+++|+||+|++||.++|..
T Consensus 3 iy~~yi~~~~~~liy~~~~~~ 23 (219)
T 2j3t_D 3 IFSVYVVNKAGGLIYQLDSYA 23 (219)
T ss_dssp EEEEEEECTTSCEEEEEECC-
T ss_pred EEEEEEEecCCceEEecccCC
Confidence 799999999999999999874
No 16
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.90 E-value=5.4 Score=32.11 Aligned_cols=93 Identities=8% Similarity=0.115 Sum_probs=55.2
Q ss_pred CEEEEEEEeCCCCeeEEecCCCc-hhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCce
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEA-DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKV 79 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~-~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~ 79 (143)
||.++.|+|++|.++..|.|... ...+ ++.|...+......+ . .. .+...+++ .+.|....++
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~---------~~~f~~~v~~~~~~~-~-~~----~~i~~~~~-~~vy~~~~~L 65 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDMSE---------VEHFMPILMEKEEEG-M-LS----PILAHGGV-RFMWIKHNNL 65 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTTTT---------HHHHHHHHHHHHHTS-C-CC----SEEEETTE-EEEEEEETTE
T ss_pred ceEEEEEECCCCCEEEEEecCCCCChHH---------HHHHHHHHhhccccC-C-CC----CEEEECCE-EEEEEEECCE
Confidence 88999999999999999988743 2111 122222111100000 0 11 12345554 4667778899
Q ss_pred EEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh
Q 032311 80 KFILVTTDLDVRDADVRNFFRRFHAAYIDAV 110 (143)
Q Consensus 80 Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v 110 (143)
-|+++++.. .++-.+-++++.+.++.-+|.
T Consensus 66 yfv~~~~~~-~n~l~~le~L~~~v~~l~~yf 95 (423)
T 1w63_M 66 YLVATSKKN-ACVSLVFSFLYKVVQVFSEYF 95 (423)
T ss_dssp EEEEEESSC-CCTHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEecCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 999999752 244556667777777766665
No 17
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=69.74 E-value=3.2 Score=23.77 Aligned_cols=15 Identities=20% Similarity=0.685 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhh
Q 032311 96 RNFFRRFHAAYIDAV 110 (143)
Q Consensus 96 ~~~f~~i~~~Y~~~v 110 (143)
.+|+.+||++|+..+
T Consensus 28 ~~Fl~~IHeAYl~sl 42 (51)
T 2wx3_A 28 SSFLSTLHEVYLQVL 42 (51)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999999876
No 18
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=64.81 E-value=34 Score=24.16 Aligned_cols=118 Identities=13% Similarity=0.200 Sum_probs=69.3
Q ss_pred CEEEEEEEeCCCCeeEEecCCCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecCceE
Q 032311 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK 80 (143)
Q Consensus 1 mi~~l~Ii~~~~~ply~~~~~~~~~~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~Tg~K 80 (143)
|-..-+.|.|.+.+|.+......|-. . + +-. +-+++.+. + .. .-++.++|.+|... ..|+-
T Consensus 54 M~I~Ya~VArg~tiLAE~t~~~gnf~-~---v---a~~-iL~kip~~-----~-~r----~t~~~~~y~fHyl~-~dgl~ 114 (173)
T 4afi_A 54 MAILFAVVARGTTILAKHAWCGGNFL-E---V---TEQ-ILAKIPSE-----N-NK----LTYSHGNYLFHYIC-QDRIV 114 (173)
T ss_dssp CCEEEEEEEETTEEEEEEESSCCCHH-H---H---HHH-HHTTSCSS-----S-EE----EEEEETTEEEEEEE-ETTEE
T ss_pred ccEEEEEEECCCEEEEEccCCCCCHH-H---H---HHH-HHHhCCCC-----C-Ce----EEEEECCEEEEEEE-ECCEE
Confidence 44556677888888887755443221 1 1 112 22333221 0 11 23467888777776 58999
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHHHHHhhhCCCCCCCCCC-cchhHHHHHHHHHHHhCC
Q 032311 81 FILVTTDLDVRDADVRNFFRRFHAAYIDAVSNPFHVPGKKI-TSRTFAERVSTIVKSFGL 139 (143)
Q Consensus 81 fvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I-~s~~F~~~v~~~~~~~~~ 139 (143)
+++++|.. ..-...-.||.+|.+.|...--+-.- ...|- -+..|...+++.++.||.
T Consensus 115 yl~i~D~~-~~rr~aF~FLedI~~eF~~~yg~~~~-ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 115 YLCITDDD-FERSRAFSFLNEVKKRFQTTYGSRAQ-TALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp EEEEEETT-SCHHHHHHHHHHHHHHHHHHHGGGGG-TCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCc-cChhHHHHHHHHHHHHHHHHhchhhh-hccCcchhHHHHHHHHHHHHHhcC
Confidence 99999963 34455677888888777664322110 11111 135799999999998864
No 19
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=64.50 E-value=30 Score=23.46 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=47.5
Q ss_pred eecCCeEEEEEEecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 032311 63 YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKSFG 138 (143)
Q Consensus 63 ~~~~~~~v~~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~~~ 138 (143)
.+.++|.+|.+....|+-+|+++|. .....-.=.+|++|.+-|.... .+-.-....+-..-.| ..+++++++|+
T Consensus 63 v~~~~y~fH~~~~~~gl~~l~i~D~-~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f-~~l~~~i~kYq 137 (144)
T 3bw6_A 63 IEEGNYIGHVYARSEGICGVLITDK-EYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKM-KQLDTYISKYQ 137 (144)
T ss_dssp EEETTEEEEEEECTTSEEEEEEEET-TSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGCC-THHHHHHHHTS
T ss_pred EEeCCEEEEEEEecCCEEEEEEECC-CCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcch-HHHHHHHHHhC
Confidence 4778999999988899999999996 3445556778899998777643 1101111110002234 56667777773
No 20
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=57.70 E-value=3.3 Score=23.20 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhh
Q 032311 97 NFFRRFHAAYIDAV 110 (143)
Q Consensus 97 ~~f~~i~~~Y~~~v 110 (143)
+|+.+||++|+..+
T Consensus 27 ~Fl~~iHeAYl~sl 40 (46)
T 2wx4_A 27 EFANKLHKAYLNGC 40 (46)
T ss_dssp THHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 58899999999865
No 21
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=54.33 E-value=44 Score=23.15 Aligned_cols=67 Identities=10% Similarity=0.204 Sum_probs=48.9
Q ss_pred CCeEEEEEE-ecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh-hCCCCCCC---CCCcchhHHHHHHHHHH
Q 032311 66 ENYKVYGYL-TNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV-SNPFHVPG---KKITSRTFAERVSTIVK 135 (143)
Q Consensus 66 ~~~~v~~y~-T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v-~NPFy~~~---~~I~s~~F~~~v~~~~~ 135 (143)
..+.|++|+ .+..+-+|+.+.. .+.++..+.+.+...|.... ..++.+.. ..|+++.--.++-.++.
T Consensus 46 ~~~~i~A~vlMpNH~Hll~~~p~---~~~~ls~~~~~~k~~~~~~~~~~~~WQ~ry~~~~i~~e~~l~~~~~YI~ 117 (165)
T 4er8_A 46 RPFEINAWVVLPEHMHCIWTLPE---GDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIY 117 (165)
T ss_dssp SCCEEEEEEECSSEEEEEEECCT---TCCCHHHHHHHHHHHHHHHTTCSSCBCSSCEEEECCSHHHHHHHHHHHH
T ss_pred CCcEEEEEEEcCCceEEEEEeCC---cchhHHHHHHHHHHHhHHhcccCcCcccCccceEECCHHHHHHHHHHHH
Confidence 357899995 8888888887654 55678888899998899888 66776643 46777666665555553
No 22
>1ka8_A Putative P4-specific DNA primase; winged helix, transferase; 2.95A {Enterobacteria phage P4} SCOP: a.4.5.20
Probab=51.03 E-value=27 Score=22.73 Aligned_cols=37 Identities=19% Similarity=0.470 Sum_probs=31.4
Q ss_pred HHHHHHHHHhh-hCCCCCCCCCCcchhHHHHHHHHHHHhCC
Q 032311 100 RRFHAAYIDAV-SNPFHVPGKKITSRTFAERVSTIVKSFGL 139 (143)
Q Consensus 100 ~~i~~~Y~~~v-~NPFy~~~~~I~s~~F~~~v~~~~~~~~~ 139 (143)
..+|.+|+.|. +|=+ ..|+.=..|.+.+.++++.|+.
T Consensus 35 ~yLYhAYLaymea~g~---~~pLsl~~Fg~~l~~alke~g~ 72 (100)
T 1ka8_A 35 KYLYHAYLAYMEANGY---RNVLSLKMFGLGLPVMLKEYGL 72 (100)
T ss_dssp TBHHHHHHHHHHHTTC---SCCCCHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHHHHhch
Confidence 57888999988 8877 4588889999999999999864
No 23
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=49.38 E-value=4.4 Score=21.10 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=22.9
Q ss_pred HHHHHhhhCCCCCCCCCCcchhHHHHHHHH
Q 032311 104 AAYIDAVSNPFHVPGKKITSRTFAERVSTI 133 (143)
Q Consensus 104 ~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~ 133 (143)
.+-.+|+.-|..-......|..||++|.+.
T Consensus 5 ~LALKYLLTPv~~l~a~~Ssr~FD~QVEK~ 34 (36)
T 3bua_E 5 GLALKYLLTPVNFFQAGYSSRRFDQQVEKY 34 (36)
T ss_pred HHHHHHHhhhHHHHhcccchhhHHHHHHHh
Confidence 345677777776667788899999999865
No 24
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=28.78 E-value=58 Score=19.50 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhCCC
Q 032311 92 DADVRNFFRRFHAAYIDAVSNPF 114 (143)
Q Consensus 92 ~~~i~~~f~~i~~~Y~~~v~NPF 114 (143)
|+++|.++.-||+.=+|.+.|--
T Consensus 15 D~diReLLSlvheIKID~It~n~ 37 (69)
T 1skv_A 15 DEDVRELLSLIHEIKIDRITGNM 37 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHheeeeccCC
Confidence 67899999999999999995543
No 25
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=27.85 E-value=1.4e+02 Score=20.07 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=48.4
Q ss_pred EEEEEeCCCCeeEEecC---CCc-hh--HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccceecCCeEEEEEEecC
Q 032311 4 CVAVVGHQNNPLYIQSF---TEA-DD--ALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNT 77 (143)
Q Consensus 4 ~l~Ii~~~~~ply~~~~---~~~-~~--~l~l~~~~~~sLd~i~~~~~~~~~~~~~~~~~ylg~l~~~~~~~v~~y~T~T 77 (143)
+..+++++|.+|-...- ... +. ---+....+++.+.+.+.+... ...+ .+.+.++..+|......
T Consensus 28 ~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~~la~~Lge~-----~~~~----l~~eGe~~~i~i~~vg~ 98 (136)
T 3t12_B 28 YALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQALAKLLGEA-----RFQE----EVHQGERMGLYVDEAGE 98 (136)
T ss_dssp EEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHHHHHHHTTCS-----CCCC----EEEECSSCEEEEEESST
T ss_pred EEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCC-----chhH----heEEcCcCCEEEEEcCC
Confidence 67899999999988742 222 22 1234456777777888777632 1112 34567888999888766
Q ss_pred ceEEEEEEcC
Q 032311 78 KVKFILVTTD 87 (143)
Q Consensus 78 g~Kfvl~~~~ 87 (143)
..=.+++++.
T Consensus 99 ~~iLvvifd~ 108 (136)
T 3t12_B 99 HALLVLVFDE 108 (136)
T ss_dssp TEEEEEEECT
T ss_pred CEEEEEEeCC
Confidence 6777777775
No 26
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=23.56 E-value=25 Score=18.40 Aligned_cols=13 Identities=8% Similarity=0.278 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHHH
Q 032311 92 DADVRNFFRRFHA 104 (143)
Q Consensus 92 ~~~i~~~f~~i~~ 104 (143)
++.+-+||++||+
T Consensus 5 ~~~l~~~fk~iY~ 17 (35)
T 2jtt_C 5 SEGLMNVLKKIYE 17 (35)
T ss_dssp CCSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh
Confidence 4568899999984
No 27
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=23.12 E-value=82 Score=19.86 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=24.3
Q ss_pred cCCeEEEEEEecCceEEEEEEcCCCcCcHHHHHHHHHHH
Q 032311 65 TENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFH 103 (143)
Q Consensus 65 ~~~~~v~~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~ 103 (143)
..+-.+|+-...+| |+|++.+.. +.+++...+++|.
T Consensus 29 ipgvEi~~~~~~~G-kiVV~iEa~--~~~~l~~~i~~I~ 64 (95)
T 2jsx_A 29 FPGCEVAVSDAPSG-QLIVVVEAE--DSETLIQTIESVR 64 (95)
T ss_dssp STTEEEEEEETTTT-EEEEEEEES--SHHHHHHHHHHHT
T ss_pred CCCeEEEEecCCCC-CEEEEEEeC--CHHHHHHHHHHHh
Confidence 34456666555567 999999874 5666666767665
No 28
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=23.07 E-value=1.3e+02 Score=19.40 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=26.3
Q ss_pred CeEEEEEEecCceEEEEEEcCC----CcCcHHHHHHHHHHHHH
Q 032311 67 NYKVYGYLTNTKVKFILVTTDL----DVRDADVRNFFRRFHAA 105 (143)
Q Consensus 67 ~~~v~~y~T~Tg~Kfvl~~~~~----~~~~~~i~~~f~~i~~~ 105 (143)
+-+|+.-+|-.|+|++++-.+. .+...+|..+++++.+.
T Consensus 61 egsvsivetkngykylvirhpdggthtvpktdisailkelcev 103 (131)
T 2x5c_A 61 EGSVSIVETKNGYKYLVIRHPDGGTHTVPKTDISAILKELCEV 103 (131)
T ss_dssp EEEEEEEECTTSCEEEEEECTTSCEEECCTTCCHHHHHHHHHH
T ss_pred ccceEEEEecCCcEEEEEECCCCCccccccccHHHHHHHHHHH
Confidence 4577788999999999987542 13344566666666543
No 29
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=22.56 E-value=88 Score=15.92 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.5
Q ss_pred CcHHHHHHHHHHHHHHHHh
Q 032311 91 RDADVRNFFRRFHAAYIDA 109 (143)
Q Consensus 91 ~~~~i~~~f~~i~~~Y~~~ 109 (143)
.++.--.|+++++++|-.|
T Consensus 11 ~~EsPs~FlerL~eayR~y 29 (32)
T 1bm4_A 11 PNESPSAFLERLKEAYRRY 29 (32)
T ss_dssp GGGHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHHhc
Confidence 4566788999999999876
No 30
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=22.21 E-value=42 Score=24.44 Aligned_cols=46 Identities=15% Similarity=0.336 Sum_probs=11.1
Q ss_pred CcHHHHHHHHHHHHHHHHhh--hCCCCCCCCCC---------cchhHHHHHHHHHHH
Q 032311 91 RDADVRNFFRRFHAAYIDAV--SNPFHVPGKKI---------TSRTFAERVSTIVKS 136 (143)
Q Consensus 91 ~~~~i~~~f~~i~~~Y~~~v--~NPFy~~~~~I---------~s~~F~~~v~~~~~~ 136 (143)
..+-...++.+|-.-|-+|. |+||-..+..+ +=.+|.++++++..+
T Consensus 13 sq~m~~~LLe~i~~~YddY~~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~~~ 69 (204)
T 2jqq_A 13 SQKMVQTLLEQIRSNYDDYLTFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLIKD 69 (204)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556788999999999998 99998854322 245788888888765
No 31
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=20.78 E-value=2.3e+02 Score=23.52 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Q 032311 91 RDADVRNFFRRFHAAYIDAVSNPFHVPGKKITSRTFAERVSTIVKSFGLSS 141 (143)
Q Consensus 91 ~~~~i~~~f~~i~~~Y~~~v~NPFy~~~~~I~s~~F~~~v~~~~~~~~~~~ 141 (143)
-++.+..||.++++.-.. +.||-|+. ++.+.+-|+...+.+.|++
T Consensus 136 Lee~v~~Ff~~Lf~~~f~-llnp~~~~-----s~dY~eCl~~~~~~l~PFG 180 (506)
T 3odn_A 136 LLEVMDKFFNTLYQKMFT-VLNTQYTF-----DENYMRCVSEHMKELKPFG 180 (506)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTTTSCC-----CHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHH-HcCCCCCC-----ChHHHHHHHHHHHhhCCcc
Confidence 366789999999964444 46999852 6678888888888888765
No 32
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=20.76 E-value=1.6e+02 Score=21.64 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=35.3
Q ss_pred ccccccceecCCeEEEEEEecCceEEEEEEcCCCcCcHHHHHHHHHHHHHHHHhh
Q 032311 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNFFRRFHAAYIDAV 110 (143)
Q Consensus 56 ~~ylg~l~~~~~~~v~~y~T~Tg~Kfvl~~~~~~~~~~~i~~~f~~i~~~Y~~~v 110 (143)
+.|=|++++..+-++-..+=.||- |++|..+ +.++++.-++.||..-.++-
T Consensus 166 E~fPGliyR~~~pkvt~lIF~SGK--iviTGak--s~~d~~~A~~~I~p~L~~fr 216 (218)
T 3eik_A 166 ELFPGLIYRMVKPKIVLLIFVSGK--IVLTGAK--VRDDIYQAFNNIYPVLIQHR 216 (218)
T ss_dssp TTSSSEEEEETTTTEEEEECTTSE--EEEEEES--SHHHHHHHHHHHHHHHHHTB
T ss_pred ccCceEEEEcCCCCEEEEEeCCCe--EEEEecC--CHHHHHHHHHHHHHHHHHhh
Confidence 456667777777677777777773 3344433 68899999999998766653
No 33
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=20.25 E-value=32 Score=17.48 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 032311 95 VRNFFRRFHAAYI 107 (143)
Q Consensus 95 i~~~f~~i~~~Y~ 107 (143)
=+.+|+++|.+|.
T Consensus 13 ~~e~FeRL~~iYT 25 (31)
T 1bl1_A 13 EREVFDRLGMIYT 25 (31)
T ss_dssp HHHHHHSSHHHHH
T ss_pred hHHHHhheeeEEE
Confidence 4788999998885
Done!