BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032312
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DAM|A Chain A, Crystal Structure Of Allene Oxide Synthase
 pdb|3DAN|A Chain A, Crystal Structure Of Allene Oxide Synthase
 pdb|3DBM|A Chain A, Crystal Structure Of Allene Oxide Synthase
          Length = 473

 Score = 28.1 bits (61), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 37  GLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFL---FFTI 93
           G  A +LI SW+L  +A  L   LPW   F + P    F   A L  S  N L   F ++
Sbjct: 191 GTSAPTLISSWVLFNLAPTLDLGLPW---FLQEPLLHTFRLPAFLIKSTYNKLYDYFQSV 247

Query: 94  LSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEI 137
            + +M   +    P+D   H   ++  +C+          PN +
Sbjct: 248 ATPVMEQAEKLGVPKDEAVHN--ILFAVCFNTFGGVKILFPNTL 289


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.332    0.143    0.489 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,637,238
Number of Sequences: 62578
Number of extensions: 123011
Number of successful extensions: 188
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 4
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 46 (22.3 bits)