Query 032312
Match_columns 143
No_of_seqs 109 out of 355
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2592 Tumor differentially e 100.0 2.8E-44 6.1E-49 301.3 12.4 139 1-141 1-139 (426)
2 PF03348 Serinc: Serine incorp 100.0 1.4E-41 3E-46 291.6 10.6 134 8-142 1-139 (429)
3 PF10847 DUF2656: Protein of u 36.4 9.3 0.0002 28.4 -0.5 47 72-120 60-107 (132)
4 KOG2632 Rhomboid family protei 29.2 3.3E+02 0.0071 22.5 7.8 31 108-138 147-179 (258)
5 PF11174 DUF2970: Protein of u 29.1 68 0.0015 20.2 2.6 22 97-118 11-33 (56)
6 PF03034 PSS: Phosphatidyl ser 26.5 65 0.0014 26.8 2.8 33 79-112 4-36 (280)
7 COG0534 NorM Na+-driven multid 24.5 1.5E+02 0.0032 25.7 4.8 42 100-142 85-126 (455)
8 PF07096 DUF1358: Protein of u 24.3 88 0.0019 23.0 2.8 38 74-113 82-119 (124)
9 PF09796 QCR10: Ubiquinol-cyto 24.2 2.1E+02 0.0045 18.5 4.9 38 27-64 7-50 (64)
10 PF08019 DUF1705: Domain of un 23.6 3E+02 0.0065 20.2 8.7 27 27-53 15-41 (156)
11 PF12273 RCR: Chitin synthesis 22.5 50 0.0011 23.7 1.3 21 85-105 5-25 (130)
12 cd03500 SQR_TypeA_SdhD_like Su 22.2 2.2E+02 0.0047 19.4 4.5 54 80-135 7-66 (106)
13 COG2009 SdhC Succinate dehydro 21.3 3.2E+02 0.007 19.7 5.5 55 77-131 20-81 (132)
14 PF06123 CreD: Inner membrane 21.2 1.4E+02 0.0031 26.2 4.1 45 33-94 298-342 (430)
15 PF08525 OapA_N: Opacity-assoc 21.2 99 0.0022 16.8 2.0 16 121-136 15-30 (30)
16 PHA03240 envelope glycoprotein 20.9 67 0.0014 26.1 1.8 29 113-141 212-241 (258)
17 PF11023 DUF2614: Protein of u 20.6 2.9E+02 0.0063 20.0 4.8 36 84-127 13-48 (114)
18 KOG2592 Tumor differentially e 20.2 5.4E+02 0.012 22.8 7.2 103 33-138 300-425 (426)
19 PRK08378 hypothetical protein; 20.0 55 0.0012 22.8 1.0 10 108-117 82-91 (93)
No 1
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=100.00 E-value=2.8e-44 Score=301.26 Aligned_cols=139 Identities=35% Similarity=0.649 Sum_probs=129.0
Q ss_pred CchhhhhHHhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCCCcccchhhhHH
Q 032312 1 MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAV 80 (143)
Q Consensus 1 ~~~~~~~~~c~g~~~c~~c~~~~~~~~s~~tR~~Ya~~~l~~~i~a~i~~~~~~~~~~~~~~~~~~~~~~~~~c~G~~aV 80 (143)
+.++++++||||+++|-+|.+||+.+||++||++|+++++++++++|+|+-..++.++|.||+++. .||++++|+.||
T Consensus 1 ~~~~s~~~cc~g~~acl~cs~cps~~nst~tRl~ya~~l~l~~~vs~i~~~~~~~~l~k~p~~c~~--~~c~~~~gy~AV 78 (426)
T KOG2592|consen 1 PSAASSVACCCGGAACLLCSCCPSLTNSTVTRLIYAFILLLGTLVSWIMLPGAEKQLNKLPWFCEG--NDCGKLLGYKAV 78 (426)
T ss_pred CchHHHHHHhhcchHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCccccC--CCcccchhhhHH
Confidence 357789999999999977888999999999999999999999999999997667778899998863 478899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchhhhhccchHHHHHHHHHHHHHHhcccccccccc
Q 032312 81 LRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFY 141 (143)
Q Consensus 81 yRvsfal~~Ff~l~~l~~igv~~~~d~Ra~ihnG~W~~K~~~~~~l~i~~FfIP~~~f~~Y 141 (143)
||+|||+++||++++++|+|||+++|||++||||||++|+++|+++++++|||||++|..+
T Consensus 79 yR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~ 139 (426)
T KOG2592|consen 79 YRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISF 139 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhH
Confidence 9999999999999999999999999999999999999999999999999999999888643
No 2
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=100.00 E-value=1.4e-41 Score=291.61 Aligned_cols=134 Identities=37% Similarity=0.744 Sum_probs=118.8
Q ss_pred HHhhhhhhhcccc-CCCCC-CcchhHHHHHHHHHHHHHHHHHHHHH--HHHhHHhhcccccccCCCCcccchhhhHHHHH
Q 032312 8 ASCCAACACDACR-SAVSG-ISRRSARIAYCGLFALSLIVSWILRE--VAAPLMEKLPWINHFHKTPSREWFETDAVLRV 83 (143)
Q Consensus 8 ~~c~g~~~c~~c~-~~~~~-~~s~~tR~~Ya~~~l~~~i~a~i~~~--~~~~~~~~~~~~~~~~~~~~~~c~G~~aVyRv 83 (143)
|||||+++|++|| ||++. ++|++||++|+++|+++++++|+|++ +.+++.+++|++++- ++++++|+|++||||+
T Consensus 1 acCcgsaaCs~~c~~c~~~~~~s~~tR~~Ya~~~l~~~i~a~i~~~~~~~~~l~~~~~~~~~~-~C~~~~c~G~~aVyRv 79 (429)
T PF03348_consen 1 ACCCGSAACSLCCSCCPSCFKSSTSTRIMYALIFLLGTILAWIMLSPGVESKLKKKIPWFCGF-DCPSDSCVGYSAVYRV 79 (429)
T ss_pred CCchhHhHHHHHHhccCCcCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCC-CcchHHhhhhHHHHHH
Confidence 6899999998754 56676 89999999999999999999999999 777777778877620 1124889999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhccchHHHHHHHHHHHHHHhcccc-ccccccc
Q 032312 84 SLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN-EIVSFYG 142 (143)
Q Consensus 84 sfal~~Ff~l~~l~~igv~~~~d~Ra~ihnG~W~~K~~~~~~l~i~~FfIP~-~~f~~Yg 142 (143)
|||+++||++|+++|+|||+++|+|++||||||++|+++|+++++++||||| .|+.+|+
T Consensus 80 sfal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~ 139 (429)
T PF03348_consen 80 SFALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYM 139 (429)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 6666664
No 3
>PF10847 DUF2656: Protein of unknown function (DUF2656); InterPro: IPR020325 This entry contains uncharacterised proteins from the cpeY 3'-region. They have no known function, but are found in the phycobilisome.
Probab=36.35 E-value=9.3 Score=28.36 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=36.2
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcc-hhhhhccchHHHH
Q 032312 72 REWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDP-RDSLHHGGWMMKI 120 (143)
Q Consensus 72 ~~c~G~~aVyRvsfal~~Ff~l~~l~~igv~~~~d~-Ra~ihnG~W~~K~ 120 (143)
..|.-.-.=||.+.+-...|-+|++- |.|++... -+-+|.|.|++-+
T Consensus 60 ~~~v~aw~~~R~~~g~~~~h~ilaLG--GrKds~a~p~sPLQ~G~WGVDV 107 (132)
T PF10847_consen 60 EELVRAWKQYRNSLGHSMNHDILALG--GRKDSPASPGSPLQEGEWGVDV 107 (132)
T ss_pred HHHHHHHHHHHHhhcCCccchhhhhc--cccCCCCCCCCCCccCccceeE
Confidence 45777778899999999999999776 77776432 2249999998743
No 4
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=29.22 E-value=3.3e+02 Score=22.49 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=24.2
Q ss_pred hhhhhccch--HHHHHHHHHHHHHHhccccccc
Q 032312 108 RDSLHHGGW--MMKIICWCLLVIFMFFLPNEIV 138 (143)
Q Consensus 108 Ra~ihnG~W--~~K~~~~~~l~i~~FfIP~~~f 138 (143)
|...=.|-- +.|+.-|+.++...+++||..|
T Consensus 147 r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSF 179 (258)
T KOG2632|consen 147 RSRSVFGLFSIPIVLAPWALLIATQILVPQASF 179 (258)
T ss_pred cchhhcccccccHHHHHHHHHHHHHHHccCchH
Confidence 443444544 9999999999999999999655
No 5
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=29.12 E-value=68 Score=20.19 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=15.2
Q ss_pred HHhhccCCCcchhhhhcc-chHH
Q 032312 97 LMVGVKNQKDPRDSLHHG-GWMM 118 (143)
Q Consensus 97 ~~igv~~~~d~Ra~ihnG-~W~~ 118 (143)
..+||+|++|.+...+++ -|++
T Consensus 11 af~GVqs~~~~e~Df~~~~p~~~ 33 (56)
T PF11174_consen 11 AFFGVQSSKNRERDFAQGSPVHF 33 (56)
T ss_pred HHhCcCcchhHHHHHHcCCCchH
Confidence 356999999986667555 4443
No 6
>PF03034 PSS: Phosphatidyl serine synthase; InterPro: IPR004277 Phosphatidyl serine synthase is also known as serine exchange enzyme (2.7.8 from EC). This family represents eukaryotic PSS I and II, membrane bound proteins that catalyse the replacement of the head group of a phospholipid (phosphotidylcholine or phosphotidylethanolamine) by L-serine.; GO: 0006659 phosphatidylserine biosynthetic process
Probab=26.51 E-value=65 Score=26.83 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcchhhhh
Q 032312 79 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLH 112 (143)
Q Consensus 79 aVyRvsfal~~Ff~l~~l~~igv~~~~d~Ra~ih 112 (143)
||-|+-+|+++.|++..+.+ -..+.+|.|..++
T Consensus 4 a~WR~v~g~~v~Y~~~L~fl-lfq~~~~~r~~l~ 36 (280)
T PF03034_consen 4 AFWRIVFGLSVLYLLFLVFL-LFQNRDDARQILK 36 (280)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HhCcHHHHHHHHH
Confidence 78999999999998765554 4567777777553
No 7
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=24.53 E-value=1.5e+02 Score=25.67 Aligned_cols=42 Identities=21% Similarity=0.506 Sum_probs=25.3
Q ss_pred hccCCCcchhhhhccchHHHHHHHHHHHHHHhccccccccccc
Q 032312 100 GVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYG 142 (143)
Q Consensus 100 gv~~~~d~Ra~ihnG~W~~K~~~~~~l~i~~FfIP~~~f~~Yg 142 (143)
|-+|.++.|...+++.|..=++- +.+.+..++.|+..+...|
T Consensus 85 Ga~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~ll~~l~ 126 (455)
T COG0534 85 GAGDRKKAKRVLGQGLLLALLLG-LLLAILLLFFAEPLLRLLG 126 (455)
T ss_pred cCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcC
Confidence 55566777778999999544444 3344445555666555443
No 8
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=24.26 E-value=88 Score=23.00 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=27.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcchhhhhc
Q 032312 74 WFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHH 113 (143)
Q Consensus 74 c~G~~aVyRvsfal~~Ff~l~~l~~igv~~~~d~Ra~ihn 113 (143)
.+|.-.+|=++=.-.++|.+.=+ .|++|.+|.|.++||
T Consensus 82 ALgWGTlyA~~GvG~l~~~iwK~--~Gv~~~~eFr~km~s 119 (124)
T PF07096_consen 82 ALGWGTLYAVCGVGVLVFGIWKL--SGVKNLKEFREKMGS 119 (124)
T ss_pred HHhHHHHHHHHhHHHHHHHHHHH--hccCcHHHHHHHHHh
Confidence 46777788766555555555533 399999999999987
No 9
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=24.20 E-value=2.1e+02 Score=18.53 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH------HHHhHHhhccccc
Q 032312 27 SRRSARIAYCGLFALSLIVSWILRE------VAAPLMEKLPWIN 64 (143)
Q Consensus 27 ~s~~tR~~Ya~~~l~~~i~a~i~~~------~~~~~~~~~~~~~ 64 (143)
.++.+|+.=.+...-+...+-++.. ++++.++|+|++.
T Consensus 7 ~~~~~~~~p~~a~wG~aa~~~v~~f~~~vPr~q~dil~KIP~~G 50 (64)
T PF09796_consen 7 PKTLTRYGPNLALWGGAAGAAVLFFTSGVPRFQRDILQKIPVFG 50 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhCCccc
Confidence 4556666666655544443333333 7778999999764
No 10
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=23.63 E-value=3e+02 Score=20.16 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=22.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 032312 27 SRRSARIAYCGLFALSLIVSWILREVA 53 (143)
Q Consensus 27 ~s~~tR~~Ya~~~l~~~i~a~i~~~~~ 53 (143)
.+...|...+++++++++.++.+..++
T Consensus 15 ~r~~~K~~~~~l~l~sa~~~yf~~~Yg 41 (156)
T PF08019_consen 15 WRRLFKPLLILLLLLSAIASYFMDTYG 41 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356788999999999999999888743
No 11
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.45 E-value=50 Score=23.70 Aligned_cols=21 Identities=10% Similarity=0.271 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhccCCC
Q 032312 85 LGNFLFFTILSILMVGVKNQK 105 (143)
Q Consensus 85 fal~~Ff~l~~l~~igv~~~~ 105 (143)
|++.+..+++.+++...+++|
T Consensus 5 ~~iii~~i~l~~~~~~~~~rR 25 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHNRR 25 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333
No 12
>cd03500 SQR_TypeA_SdhD_like Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial
Probab=22.21 E-value=2.2e+02 Score=19.36 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-c--CC---CcchhhhhccchHHHHHHHHHHHHHHhcccc
Q 032312 80 VLRVSLGNFLFFTILSILMVGV-K--NQ---KDPRDSLHHGGWMMKIICWCLLVIFMFFLPN 135 (143)
Q Consensus 80 VyRvsfal~~Ff~l~~l~~igv-~--~~---~d~Ra~ihnG~W~~K~~~~~~l~i~~FfIP~ 135 (143)
.+|+|-..-.+++..-+..... . +. ++..+.++|.+ .|++.++.+....+=..|
T Consensus 7 ~qRiTgv~L~~~l~~hi~~~~~~~~~~~~~~~~~~~~~~~p~--~~i~~~lll~~~~~H~~~ 66 (106)
T cd03500 7 FQRITGVFLVFLLAGHFWVQHMDNGGDVIDFAFVANRLASPL--WKVWDLLLLVLALLHGGN 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccCHHHHHHHHcChH--HHHHHHHHHHHHHHHHHH
Confidence 5788877766666544443222 1 11 12233456654 466666666655543444
No 13
>COG2009 SdhC Succinate dehydrogenase/fumarate reductase, cytochrome b subunit [Energy production and conversion]
Probab=21.32 E-value=3.2e+02 Score=19.66 Aligned_cols=55 Identities=20% Similarity=0.414 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-----hccCCCcchhhhh--ccchHHHHHHHHHHHHHHh
Q 032312 77 TDAVLRVSLGNFLFFTILSILMV-----GVKNQKDPRDSLH--HGGWMMKIICWCLLVIFMF 131 (143)
Q Consensus 77 ~~aVyRvsfal~~Ff~l~~l~~i-----gv~~~~d~Ra~ih--nG~W~~K~~~~~~l~i~~F 131 (143)
..-.||++=....+|+..-++.. +..+.++.-+..+ -+-|..|+.++.......|
T Consensus 20 ~silHRitGv~l~~Fl~~hil~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (132)
T COG2009 20 ASILHRISGVILAFFLFVHILLASSWLAGSASFNAAFEFYHALLGSFIVKLVLLGLVLALLY 81 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 34589998777655444433333 3333344445566 5788888888766665544
No 14
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.22 E-value=1.4e+02 Score=26.23 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCCCcccchhhhHHHHHHHHHHHHHHHH
Q 032312 33 IAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTIL 94 (143)
Q Consensus 33 ~~Ya~~~l~~~i~a~i~~~~~~~~~~~~~~~~~~~~~~~~~c~G~~aVyRvsfal~~Ff~l~ 94 (143)
.-|+++|+.-+.++.++.+..++. ++..+ -|. =|.+|+++||+++
T Consensus 298 ~KYgiLFI~LTF~~fflfE~~~~~--~iHpi------------QY~---LVGlAl~lFYlLL 342 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFELLSKL--RIHPI------------QYL---LVGLALVLFYLLL 342 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--cccHH------------HHH---HHHHHHHHHHHHH
Confidence 459999999999999888744432 11111 111 2678888888765
No 15
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=21.16 E-value=99 Score=16.83 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhccccc
Q 032312 121 ICWCLLVIFMFFLPNE 136 (143)
Q Consensus 121 ~~~~~l~i~~FfIP~~ 136 (143)
..+.+++++.+++|++
T Consensus 15 ~~l~~v~l~ll~~Ps~ 30 (30)
T PF08525_consen 15 IALSAVVLVLLLWPSS 30 (30)
T ss_pred HHHHHHHHHHHhccCC
Confidence 3444445556667764
No 16
>PHA03240 envelope glycoprotein M; Provisional
Probab=20.88 E-value=67 Score=26.11 Aligned_cols=29 Identities=24% Similarity=0.726 Sum_probs=21.9
Q ss_pred ccchHHHHHHHHHHHHHHhc-ccccccccc
Q 032312 113 HGGWMMKIICWCLLVIFMFF-LPNEIVSFY 141 (143)
Q Consensus 113 nG~W~~K~~~~~~l~i~~Ff-IP~~~f~~Y 141 (143)
+-.|.+-+++++.++|..|| ||...++=|
T Consensus 212 H~~WIiilIIiIiIIIL~cfKiPQKl~dKw 241 (258)
T PHA03240 212 HIAWIFIAIIIIIVIILFFFKIPQKLFDKW 241 (258)
T ss_pred hHhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 44788888888888888877 998776543
No 17
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.59 E-value=2.9e+02 Score=20.02 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhccchHHHHHHHHHHH
Q 032312 84 SLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLV 127 (143)
Q Consensus 84 sfal~~Ff~l~~l~~igv~~~~d~Ra~ihnG~W~~K~~~~~~l~ 127 (143)
.||+.+-|.-+.+.-+|+ .++++-|..-+.++++++
T Consensus 13 ~~al~lif~g~~vmy~gi--------~f~~~~~im~ifmllG~L 48 (114)
T PF11023_consen 13 TFALSLIFIGMIVMYIGI--------FFKASPIIMVIFMLLGLL 48 (114)
T ss_pred HHHHHHHHHHHHHHhhhh--------hhcccHHHHHHHHHHHHH
Confidence 688888888888777774 567777777777776655
No 18
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=20.22 E-value=5.4e+02 Score=22.75 Aligned_cols=103 Identities=13% Similarity=0.028 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcccccc-------cCCC---Cc----ccchhhhHHHHHHHHHHHHHHHHHHHH
Q 032312 33 IAYCGLFALSLIVSWILREVAAPLMEKLPWINH-------FHKT---PS----REWFETDAVLRVSLGNFLFFTILSILM 98 (143)
Q Consensus 33 ~~Ya~~~l~~~i~a~i~~~~~~~~~~~~~~~~~-------~~~~---~~----~~c~G~~aVyRvsfal~~Ff~l~~l~~ 98 (143)
-.+.+++++..++-+-.|+..+..++|++.... .+++ .+ +.-+-+.-.| +-|.|+-.|..|.+.
T Consensus 300 ~iiGli~~~lcilYsalR~~s~~~l~k~~~~~~e~~~l~~~dG~~~~~d~Ek~GV~YsYsfFH-fvf~LASlyvmmtLT- 377 (426)
T KOG2592|consen 300 NIIGLIFLLLCILYSALRASSRTQLRKLTRSNEEEPLLPDEDGGGRANDNEKDGVTYSYSFFH-FVFVLASLYVMMTLT- 377 (426)
T ss_pred chHHHHHHHHHHHHHHhhccccccccccccccccccCccCCCCCcccccccCCCeeEeeeHHH-HHHHHHHHHHHHHhc-
Confidence 378899999999999999855554555553311 1111 01 1122223333 555666666555333
Q ss_pred hhccCCCcchhhhhccchH--HHH-------HHHHHHHHHHhccccccc
Q 032312 99 VGVKNQKDPRDSLHHGGWM--MKI-------ICWCLLVIFMFFLPNEIV 138 (143)
Q Consensus 99 igv~~~~d~Ra~ihnG~W~--~K~-------~~~~~l~i~~FfIP~~~f 138 (143)
--.+...|- ..+..+||. +|+ .+++=-.++++..||..|
T Consensus 378 nW~~~~~~~-~~v~~~w~~vWVKI~ssWic~~LY~WTlVAPli~p~Rdf 425 (426)
T KOG2592|consen 378 NWYTPDEDI-WFVKSSWASVWVKIVSSWICSGLYLWTLVAPLILPDRDF 425 (426)
T ss_pred cccCCCCce-eEEeccchHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Confidence 122222222 345556654 343 334445678899999755
No 19
>PRK08378 hypothetical protein; Provisional
Probab=20.00 E-value=55 Score=22.84 Aligned_cols=10 Identities=30% Similarity=0.807 Sum_probs=8.0
Q ss_pred hhhhhccchH
Q 032312 108 RDSLHHGGWM 117 (143)
Q Consensus 108 Ra~ihnG~W~ 117 (143)
....|+|||-
T Consensus 82 ~~~~~~~~~~ 91 (93)
T PRK08378 82 REEEEKGWWV 91 (93)
T ss_pred ccccCCCccc
Confidence 3679999994
Done!