Query 032312
Match_columns 143
No_of_seqs 109 out of 355
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 20:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lx0_A Membrane fusion protein 35.1 11 0.00036 20.0 0.5 11 111-121 19-29 (32)
2 1zoy_C Large cytochrome bindin 19.0 2.1E+02 0.0071 19.8 5.0 11 77-87 38-48 (140)
3 2wdq_D Succinate dehydrogenase 16.0 2.6E+02 0.0088 18.5 6.0 53 80-134 18-73 (115)
4 2h88_C Succinate dehydrogenase 15.7 2.3E+02 0.0077 19.7 4.6 11 77-87 38-48 (140)
5 3acd_A Hypoxanthine-guanine ph 11.2 66 0.0023 23.4 0.6 12 131-142 149-160 (181)
6 4a01_A Proton pyrophosphatase; 11.1 3.4E+02 0.011 24.7 5.2 35 102-136 352-387 (766)
7 1v54_D Cytochrome C oxidase su 9.0 1.6E+02 0.0055 21.1 1.9 11 76-86 55-65 (147)
8 4b4a_A TATC, SEC-independent p 8.7 3.6E+02 0.012 20.6 4.0 52 80-139 153-208 (249)
9 2y69_D Cytochrome C oxidase su 6.7 2.3E+02 0.0079 20.8 1.9 11 76-86 77-87 (169)
10 4ezc_A UREA transporter 1; mem 6.3 6E+02 0.021 20.8 4.5 32 105-136 270-301 (384)
No 1
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=35.14 E-value=11 Score=20.02 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=8.4
Q ss_pred hhccchHHHHH
Q 032312 111 LHHGGWMMKII 121 (143)
Q Consensus 111 ihnG~W~~K~~ 121 (143)
+.-|||.+|++
T Consensus 19 lafgfwlfkyl 29 (32)
T 2lx0_A 19 LAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45689998875
No 2
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=18.96 E-value=2.1e+02 Score=19.85 Aligned_cols=11 Identities=9% Similarity=-0.272 Sum_probs=7.6
Q ss_pred hhHHHHHHHHH
Q 032312 77 TDAVLRVSLGN 87 (143)
Q Consensus 77 ~~aVyRvsfal 87 (143)
.+-.||++=..
T Consensus 38 ~SIlHRiTGv~ 48 (140)
T 1zoy_C 38 MSICHRGTGIA 48 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45689999443
No 3
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=15.96 E-value=2.6e+02 Score=18.54 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcc---hhhhhccchHHHHHHHHHHHHHHhccc
Q 032312 80 VLRVSLGNFLFFTILSILMVGVKNQKDP---RDSLHHGGWMMKIICWCLLVIFMFFLP 134 (143)
Q Consensus 80 VyRvsfal~~Ff~l~~l~~igv~~~~d~---Ra~ihnG~W~~K~~~~~~l~i~~FfIP 134 (143)
.+|+|-..-.++.+..+..+...+..|- ++.++|-+ .|++.++.+..+.+=..
T Consensus 18 ~~RiSgv~L~~l~~~~l~~~~~~~~~~y~~~~~~~~~p~--~~i~~~l~l~~~~~H~~ 73 (115)
T 2wdq_D 18 LVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAF--TKVFTLLALFSILIHAW 73 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHChH--HHHHHHHHHHHHHHHHH
Confidence 7899877766666555554443222222 23344433 58877777766554333
No 4
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=15.74 E-value=2.3e+02 Score=19.68 Aligned_cols=11 Identities=9% Similarity=-0.236 Sum_probs=7.6
Q ss_pred hhHHHHHHHHH
Q 032312 77 TDAVLRVSLGN 87 (143)
Q Consensus 77 ~~aVyRvsfal 87 (143)
.+-.||++=..
T Consensus 38 ~SIlHRiTGv~ 48 (140)
T 2h88_C 38 MSITHRGTGVA 48 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45689999443
No 5
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=11.19 E-value=66 Score=23.40 Aligned_cols=12 Identities=33% Similarity=0.489 Sum_probs=9.3
Q ss_pred hccccccccccc
Q 032312 131 FFLPNEIVSFYG 142 (143)
Q Consensus 131 FfIP~~~f~~Yg 142 (143)
|=|||+|..+||
T Consensus 149 ~~ipd~fvvGyG 160 (181)
T 3acd_A 149 FEIEDAYVYGYG 160 (181)
T ss_dssp EECCSCCEEBTT
T ss_pred EECCCceEEECC
Confidence 557888888887
No 6
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=11.12 E-value=3.4e+02 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=27.5
Q ss_pred cCCCcchhhhhccchHHHHHHHHHHHHHHhc-cccc
Q 032312 102 KNQKDPRDSLHHGGWMMKIICWCLLVIFMFF-LPNE 136 (143)
Q Consensus 102 ~~~~d~Ra~ihnG~W~~K~~~~~~l~i~~Ff-IP~~ 136 (143)
++.+|+...+++|.|.--++..++..+.+++ +|++
T Consensus 352 ~~~~~~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~ 387 (766)
T 4a01_A 352 KAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPTS 387 (766)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 4456777789999999888888888887775 5764
No 7
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=9.01 E-value=1.6e+02 Score=21.12 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=8.6
Q ss_pred hhhHHHHHHHH
Q 032312 76 ETDAVLRVSLG 86 (143)
Q Consensus 76 G~~aVyRvsfa 86 (143)
--.|.||+||+
T Consensus 55 EKkAlYrisF~ 65 (147)
T 1v54_D 55 EKVELYRLKFK 65 (147)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHHhc
Confidence 34589999996
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=8.67 E-value=3.6e+02 Score=20.56 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHH----HHHHHHHhhccCCCcchhhhhccchHHHHHHHHHHHHHHhcccccccc
Q 032312 80 VLRVSLGNFLFF----TILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVS 139 (143)
Q Consensus 80 VyRvsfal~~Ff----~l~~l~~igv~~~~d~Ra~ihnG~W~~K~~~~~~l~i~~FfIP~~~f~ 139 (143)
|-|+.++..+-| +++.+...|+-+.+.-|+ + .|+.....++++++.-| +.++
T Consensus 153 v~~l~l~fGl~FelPvi~~~L~~~Giv~~~~l~~---~----Rr~~iv~~~v~aAiiTP-D~~s 208 (249)
T 4b4a_A 153 VLKLVVAFGIAFEMPIVLYVLQKAGVITPEQLAS---F----RKYFIVIAFVIGAIIAP-DVST 208 (249)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHTTSSCHHHHHH---H----HHHHHHHHHHHHHHHCS-SHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH---H----hHHHHHHHHHHHHHHCC-cHHH
Confidence 345555544444 233344445533332222 1 68888889999999889 6543
No 9
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=6.74 E-value=2.3e+02 Score=20.77 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=8.7
Q ss_pred hhhHHHHHHHH
Q 032312 76 ETDAVLRVSLG 86 (143)
Q Consensus 76 G~~aVyRvsfa 86 (143)
--.|.||+||+
T Consensus 77 EKKAlYriSF~ 87 (169)
T 2y69_D 77 EKVELYRLKFK 87 (169)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHHhc
Confidence 34689999996
No 10
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=6.35 E-value=6e+02 Score=20.81 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=24.6
Q ss_pred CcchhhhhccchHHHHHHHHHHHHHHhccccc
Q 032312 105 KDPRDSLHHGGWMMKIICWCLLVIFMFFLPNE 136 (143)
Q Consensus 105 ~d~Ra~ihnG~W~~K~~~~~~l~i~~FfIP~~ 136 (143)
..+++.+.+|.|..--++-..-+.+.|+.|+.
T Consensus 270 g~~~~~i~~GL~GfN~vL~aiAlgg~F~~~~~ 301 (384)
T 4ezc_A 270 SAPFEDIYAGLWGFNSSLACIAIGGTFMALTW 301 (384)
T ss_dssp TCCHHHHHTTTTTHHHHHHHHHHTTTSBCCCH
T ss_pred CCCHHHHhchHHHHHHHHHHHHHHHHHhcccH
Confidence 56688999999999887766655557777763
Done!