Query 032312
Match_columns 143
No_of_seqs 109 out of 355
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 20:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032312.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032312hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nekc_ f.21.2.2 (C:) Succinat 31.9 37 0.0027 21.6 4.8 53 78-131 27-83 (129)
2 d1wpga4 f.33.1.1 (A:1-124,A:24 7.6 4.1E+02 0.03 19.6 11.5 38 98-135 390-430 (472)
3 d1tc1a_ c.61.1.1 (A:) Hypoxant 7.6 52 0.0038 21.9 0.5 11 132-142 155-165 (184)
4 d1q90a3 f.23.23.1 (A:248-292) 7.5 1.8E+02 0.013 15.3 4.7 31 30-60 2-32 (45)
5 d1vf5c3 f.23.23.1 (C:250-286) 7.5 1.7E+02 0.012 14.9 3.8 29 30-58 3-31 (37)
6 d1j7ja_ c.61.1.1 (A:) Hypoxant 7.4 54 0.0039 21.6 0.6 10 133-142 146-155 (172)
7 d1v54d_ f.23.1.1 (D:) Mitochon 7.2 1.3E+02 0.0098 19.7 2.6 12 76-87 52-63 (144)
8 d1pzma_ c.61.1.1 (A:) Hypoxant 7.0 59 0.0043 21.8 0.6 12 131-142 153-164 (183)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 6.3 1.8E+02 0.013 14.1 2.6 15 83-97 17-31 (34)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 6.2 1.8E+02 0.013 14.6 2.2 17 115-131 18-34 (37)
No 1
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=31.88 E-value=37 Score=21.62 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HhhccCCCcchhhhhc--cchHHHHHHHHHHHHHHh
Q 032312 78 DAVLRVSLGNFLFFTILSIL--MVGVKNQKDPRDSLHH--GGWMMKIICWCLLVIFMF 131 (143)
Q Consensus 78 ~aVyRvsfal~~Ff~l~~l~--~igv~~~~d~Ra~ihn--G~W~~K~~~~~~l~i~~F 131 (143)
+-.||++-. .+|+.+..+. +.....+.|.=+..++ +.|..|++.+...+...+
T Consensus 27 SI~HRisGv-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 83 (129)
T d1nekc_ 27 SILHRVSGV-ITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAY 83 (129)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999844 4444332222 2122222232222222 347788887776665544
No 2
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.60 E-value=4.1e+02 Score=19.59 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=20.4
Q ss_pred HhhccCCCcc--hhh-hhccchHHHHHHHHHHHHHHhcccc
Q 032312 98 MVGVKNQKDP--RDS-LHHGGWMMKIICWCLLVIFMFFLPN 135 (143)
Q Consensus 98 ~igv~~~~d~--Ra~-ihnG~W~~K~~~~~~l~i~~FfIP~ 135 (143)
.+..|+.+++ |.. ++|-+|..=+++-+++.+...++|.
T Consensus 390 ~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~ 430 (472)
T d1wpga4 390 ALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDP 430 (472)
T ss_dssp HHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455555443 333 4555554455555555666667885
No 3
>d1tc1a_ c.61.1.1 (A:) Hypoxanthine PRTase {Trypanosoma cruzi [TaxId: 5693]}
Probab=7.55 E-value=52 Score=21.89 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=8.0
Q ss_pred ccccccccccc
Q 032312 132 FLPNEIVSFYG 142 (143)
Q Consensus 132 fIP~~~f~~Yg 142 (143)
=+||+++.+||
T Consensus 155 ~ipd~~vvGyG 165 (184)
T d1tc1a_ 155 NIPNAFVIGYG 165 (184)
T ss_dssp ECCSCEEEBTT
T ss_pred EeCCeeEEECC
Confidence 36777777776
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.49 E-value=1.8e+02 Score=15.32 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Q 032312 30 SARIAYCGLFALSLIVSWILREVAAPLMEKL 60 (143)
Q Consensus 30 ~tR~~Ya~~~l~~~i~a~i~~~~~~~~~~~~ 60 (143)
.+|+..-+.|+.+.+++=+++-.-.+..||.
T Consensus 2 P~Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 2 PARIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688888888889999988887555555553
No 5
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.47 E-value=1.7e+02 Score=14.86 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 032312 30 SARIAYCGLFALSLIVSWILREVAAPLME 58 (143)
Q Consensus 30 ~tR~~Ya~~~l~~~i~a~i~~~~~~~~~~ 58 (143)
.+|+..-+.|+.+.+++=+++-.-.+-.|
T Consensus 3 p~Rv~gl~~F~~~v~laQi~lVlKKKQ~E 31 (37)
T d1vf5c3 3 PNRVKWMIAFICLVMLAQLMLILKKKQVE 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888764333333
No 6
>d1j7ja_ c.61.1.1 (A:) Hypoxanthine PRTase {Salmonella typhimurium [TaxId: 90371]}
Probab=7.44 E-value=54 Score=21.56 Aligned_cols=10 Identities=50% Similarity=0.959 Sum_probs=6.5
Q ss_pred cccccccccc
Q 032312 133 LPNEIVSFYG 142 (143)
Q Consensus 133 IP~~~f~~Yg 142 (143)
+||+++.+||
T Consensus 146 ipd~~vvGyG 155 (172)
T d1j7ja_ 146 IPDEFVVGYG 155 (172)
T ss_dssp CCSCCEEBTT
T ss_pred cCCceEEECC
Confidence 5666666665
No 7
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.22 E-value=1.3e+02 Score=19.70 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHH
Q 032312 76 ETDAVLRVSLGN 87 (143)
Q Consensus 76 G~~aVyRvsfal 87 (143)
--.|.||+||+-
T Consensus 52 EKkalYrisF~~ 63 (144)
T d1v54d_ 52 EKVELYRLKFKE 63 (144)
T ss_dssp HHHHHHHHHCSS
T ss_pred HHHHHHHHHhcc
Confidence 456899999853
No 8
>d1pzma_ c.61.1.1 (A:) Hypoxanthine-guanine-xanthine PRTase {Leishmania tarentolae [TaxId: 5689]}
Probab=6.99 E-value=59 Score=21.77 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=9.0
Q ss_pred hccccccccccc
Q 032312 131 FFLPNEIVSFYG 142 (143)
Q Consensus 131 FfIP~~~f~~Yg 142 (143)
|=|||++..+||
T Consensus 153 ~~ipd~~vvGyG 164 (183)
T d1pzma_ 153 ITIPRAFVIGYG 164 (183)
T ss_dssp EECCSCCEEBTT
T ss_pred EECCCceEEECC
Confidence 447888888887
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=6.29 E-value=1.8e+02 Score=14.07 Aligned_cols=15 Identities=7% Similarity=0.496 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q 032312 83 VSLGNFLFFTILSIL 97 (143)
Q Consensus 83 vsfal~~Ff~l~~l~ 97 (143)
+-|.+++.|...+++
T Consensus 17 lafslamlfvfiali 31 (34)
T d1xmeb2 17 LAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777666654
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.24 E-value=1.8e+02 Score=14.56 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHHHHHh
Q 032312 115 GWMMKIICWCLLVIFMF 131 (143)
Q Consensus 115 ~W~~K~~~~~~l~i~~F 131 (143)
||++-+++.+++...+.
T Consensus 18 y~GlLlifvl~vLFssY 34 (37)
T d2axtl1 18 YLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67776666666555443
Done!