BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032313
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 187 bits (474), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 107/137 (78%)
Query: 6 TNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLP 65
NA+SGM V D K +LEL+ K+ HR++++KI+ G P ++Y++F A LP
Sbjct: 2 ANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP 61
Query: 66 DNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEI 125
++CRYA+YDFDFVT+ENCQKSKIFFIAW PD++++R+KM+YA+SKDRF+RELDGI E+
Sbjct: 62 ADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVEL 121
Query: 126 QATDPSEMDLEVIRDRA 142
QATDP+EMDL+V R RA
Sbjct: 122 QATDPTEMDLDVFRSRA 138
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Query: 10 SGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDC 69
SG+ V+D + EL+ HRYV FK++ GGP +Y+DF + LP+ DC
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDC 60
Query: 70 RYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATD 129
RYA++D++F + Q++KI FI W+PD + I++KM+Y ++KD +++L GI E+QATD
Sbjct: 61 RYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATD 119
Query: 130 PSEMDLEVIRDRAR 143
+E+ + + +RA+
Sbjct: 120 AAEISEDAVSERAK 133
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Query: 11 GMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDCR 70
G+ V+D + EL+ HRYV FK++ GGP +Y+DF + LP+ DCR
Sbjct: 2 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCR 61
Query: 71 YAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDP 130
YA++D++F + Q++KI FI W+PD + I++KM+Y ++KD +++L GI E+QATD
Sbjct: 62 YAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDA 120
Query: 131 SEMDLEVIRDRAR 143
+E+ + + +RA+
Sbjct: 121 AEISEDAVSERAK 133
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
Query: 10 SGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDC 69
SG+ VAD S + + +L+ K +++++F ++ T SYD F LP+NDC
Sbjct: 4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDC 62
Query: 70 RYAVYDFDF-VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQAT 128
YA+YDF++ + ++SKI F WSPD + +R+KM+YA+SKD RR L+G+ ++Q T
Sbjct: 63 LYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGT 122
Query: 129 DPSEMDLEVIRDR 141
D SE+ + + +R
Sbjct: 123 DFSEVSYDSVLER 135
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 10 SGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDNDC 69
SG+ V+ + EL+ K RYV+FK++ + +D F LP+ DC
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDC 62
Query: 70 RYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATD 129
RYA+YDF+F E ++KI FI+WSPDV+ I++KM+Y++SKD RR GI +IQATD
Sbjct: 63 RYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATD 121
Query: 130 PSEMDLEVIRDRA 142
SE+ E + ++
Sbjct: 122 FSEVAYETVLEKV 134
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Query: 57 YDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRR 116
+ F LP+ DCRYA+YD F T E+ +K ++ F W+P+++ +++KM+YA+SKD ++
Sbjct: 77 FKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKK 135
Query: 117 ELDGIHYEIQATDPSEMDLEVIRDR 141
+ GI +E QA P +++ I ++
Sbjct: 136 KFQGIKHECQANGPEDLNRACIAEK 160
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 13/118 (11%)
Query: 3 FRGTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTA 62
G + +SGMGV ++ + + EL+ +K ++++FKI+ G + D+F
Sbjct: 17 IEGRHMASGMGVDENCVARFNELKIRKTVKWIVFKIENTKIVVEKDGKG----NADEFRG 72
Query: 63 SLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDG 120
+LP NDCR+ VYD +KI F+ W PD + ++ +M YA+SKD ++LDG
Sbjct: 73 ALPANDCRFGVYDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDG 121
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 57 YDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRR 116
Y F LPD DCRYA+YD + T E+ +K + FI W+P+ + +++KM+YA+SKD ++
Sbjct: 68 YATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKK 126
Query: 117 ELDGIHYEIQAT 128
+L GI +E+QA
Sbjct: 127 KLTGIKHELQAN 138
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 57 YDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRR 116
Y F LP NDCRYA+YD + T E+ +K + FI W+P+ + +++KM+YA+SKD ++
Sbjct: 68 YTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKK 126
Query: 117 ELDGIHYEIQATDPSEMDLEVIRDRA 142
+ GI +E Q L+ I+DR+
Sbjct: 127 KFTGIKHEWQVN-----GLDDIKDRS 147
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 10 SGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXX-XXXTGGPAESYDDFTASLPDN- 67
SG+ V+D + L+ K +++Y+I+KI+ S D+ + +N
Sbjct: 8 SGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRIKNNL 67
Query: 68 ---DCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYE 124
+CRY + D T E + +I+FI WSP +S+ + KMLYA SK+ R+++GI
Sbjct: 68 KNTECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKS 127
Query: 125 IQAT 128
++ T
Sbjct: 128 LEIT 131
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 8 ASSGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDN 67
A SG+ VAD + +L+ KK RYVI I G ++D F ++ N
Sbjct: 10 AMSGVSVADECVTALNDLRHKK-SRYVIMHI-VDQKSIAVKTIGERGANFDQFIEAIDKN 67
Query: 68 DCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 127
YA +DF++ T++ + K+ I+W+PD R KMLY++S+D G IQA
Sbjct: 68 VPCYAAFDFEYTTNDG-PRDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQA 125
Query: 128 TDPSEMDLEVIRDRAR 143
D S +D E I + +
Sbjct: 126 NDASGLDFEEISRKVK 141
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 8 ASSGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDN 67
A SG+ + + + +L+ KK RYV+ I G + +Y D
Sbjct: 2 AISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTE 60
Query: 68 DCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQA 127
Y +DF++ ++ K+ I W PD +R R KM+Y+ S+D +G + IQA
Sbjct: 61 KPCYVAFDFEY-NDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQA 118
Query: 128 TDPSEMDLEVIRDRAR 143
D S +D E I + R
Sbjct: 119 NDESGLDAEEIIRKVR 134
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 27 RKKVHRYVIFKIDXXXXXXXXXXTGGPAES----YDDFTASL-PDNDCRYAVYDFDFVTS 81
R + +Y + KI P++S YD F L D Y ++ D S
Sbjct: 19 RARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLD---S 75
Query: 82 ENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIH 122
+N Q + FIAWSPD S +R KMLYA ++ ++E G H
Sbjct: 76 QNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGH 116
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 62 ASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGI 121
A LP D + Y + S+N Q + F+AWSPD S +R KMLYA ++ ++E G
Sbjct: 53 AVLPLLDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGG 112
Query: 122 H 122
H
Sbjct: 113 H 113
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 10 SGMGVADHSKSTYLELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDND- 68
SG+ V D+ + + ++ +K ++IF I + G + + + S+ N+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCGWIIFVIQNCEIIIH---SKGASTTLTELVQSIDKNNE 61
Query: 69 --CRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIH 122
C Y V+D SKI F ++ + S R +M YA+SK ++++G++
Sbjct: 62 IQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVN 108
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 10 SGMGVADHSKSTYLELQ-RKKVHRYVIFKIDXXXXXXXXXXTGGPAESYDDFTASLPDND 68
SG+ V D+ + + ++ RK ++IF I + G + + + S+ N+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCXGWIIFVIQNXCEIIIH--SKGASTTLTELVQSIDKNN 62
Query: 69 ---CRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIH 122
C Y V+D SKI F ++ + S R +M YA+SK ++++G++
Sbjct: 63 EIQCAYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVN 110
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 56 SYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFR 115
S ++ LP+ R+ VY + +V + + FI SP + +M+YA SK+R
Sbjct: 59 SPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV 118
Query: 116 R--ELDGIHYEIQATD 129
+ EL + +EI+ TD
Sbjct: 119 QTAELTKV-FEIRTTD 133
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 56 SYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFR 115
S ++ LP+ R+ VY + +V + + FI SP + +M+YA SK+R
Sbjct: 49 SPEELKMELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV 108
Query: 116 R--ELDGIHYEIQATD 129
+ EL + +EI+ TD
Sbjct: 109 QTAELTKV-FEIRTTD 123
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 56 SYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFR 115
S ++ LP+ R+ VY + +V + + FI SP + +M+YA SK+R
Sbjct: 65 SPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLV 124
Query: 116 R--ELDGIHYEIQATD 129
+ EL + +EI+ TD
Sbjct: 125 QTAELTKV-FEIRTTD 139
>pdb|1V6F|A Chain A, Solution Structure Of Glia Maturation Factor-Beta From Mus
Musculus
Length = 151
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 56 SYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFR 115
S D+ LP+ R+ VY + + + + FI SP + +M+YA SK++
Sbjct: 59 SPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLV 118
Query: 116 R--ELDGIHYEIQATD 129
+ EL + +EI+ T+
Sbjct: 119 QTAELTKV-FEIRNTE 133
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 63 SLPDND-CRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKD 112
SLPD++ + + DF ++SE Q + IAW +++ + K + +D
Sbjct: 338 SLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNTVIQKCNLSLDQD 388
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 63 SLPDND-CRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKD 112
SLPD++ + + DF ++SE Q + IAW +++ + K + +D
Sbjct: 338 SLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNTVIQKCNLSLDQD 388
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 28.5 bits (62), Expect = 1.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 63 SLPDND-CRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKD 112
SLPD++ + + DF ++SE Q + IAW +++ + K + +D
Sbjct: 336 SLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNTVIQKCNLSLDQD 386
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
(Tm0262) From Thermotoga Maritima At 2.00 A Resolution
Length = 378
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 104 KMLYATSKDRFRRELDGIHYEIQ 126
K+++A +KD F R L+G+ +E+
Sbjct: 152 KVIFAAAKDEFMRNLNGVFWELH 174
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|B Chain B, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|C Chain C, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|D Chain D, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|E Chain E, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
pdb|1WEK|F Chain F, Crystal Structure Of The Conserved Hypothetical Protein
Tt1465 From Thermus Thermophilus Hb8
Length = 217
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 9 SSGMGVADHSKSTYLELQRKKVHRYVIFKID 39
G G D + LQ +KVHR+ +F +D
Sbjct: 139 PGGFGTLDELSEVLVLLQTEKVHRFPVFLLD 169
>pdb|3J21|O Chain O, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 203
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 96 PDVSRIR-------AKMLYATSKDRFRRELDGIHYEIQATDPSEM 133
PD RIR AKML +++FRR+ G Y ++ DP ++
Sbjct: 139 PDEYRIRGEHIAEYAKMLKEQDEEKFRRQFGG--YLVKGLDPEKL 181
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 7 NASSGMGVADHSKSTYLELQRKKVHRYVIFKI 38
N S + ++ YLEL RK R +IF I
Sbjct: 506 NGSGAVSARQKPRTNYLELDRKNGSRLIIFVI 537
>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|B Chain B, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
pdb|3TF5|C Chain C, Structure Of Udp-Glucose Dehydrogenase V132 Deletion
Length = 493
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 97 DVSRIRAKMLYATSKDRFRRELDGIHYEIQ 126
D RI KML RR LDG+H E+Q
Sbjct: 423 DYERIHKKMLKPAFIFDGRRVLDGLHNELQ 452
>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PRJ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|B Chain B, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|C Chain C, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|D Chain D, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|E Chain E, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase.
pdb|3PTZ|F Chain F, Role Of Packing Defects In The Evolution Of Allostery And
Induced Fit In Human Udp-Glucose Dehydrogenase
Length = 494
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 97 DVSRIRAKMLYATSKDRFRRELDGIHYEIQ 126
D RI KML RR LDG+H E+Q
Sbjct: 424 DYERIHKKMLKPAFIFDGRRVLDGLHNELQ 453
>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e
pdb|4EDF|B Chain B, Dimeric Hugdh, K94e
pdb|4EDF|C Chain C, Dimeric Hugdh, K94e
pdb|4EDF|D Chain D, Dimeric Hugdh, K94e
Length = 494
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 97 DVSRIRAKMLYATSKDRFRRELDGIHYEIQ 126
D RI KML RR LDG+H E+Q
Sbjct: 424 DYERIHKKMLKPAFIFDGRRVLDGLHNELQ 453
>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|L Chain L, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|K Chain K, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|J Chain J, Crystal Structure Of Human Udp-Glucose Dehydrogenase
pdb|3TDK|I Chain I, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Length = 487
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 97 DVSRIRAKMLYATSKDRFRRELDGIHYEIQ 126
D RI KML RR LDG+H E+Q
Sbjct: 424 DYERIHKKMLKPAFIFDGRRVLDGLHNELQ 453
>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
pdb|3KHU|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Glu161gln, In Complex With Thiohemiacetal Intermediate
Length = 467
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 97 DVSRIRAKMLYATSKDRFRRELDGIHYEIQ 126
D RI KML RR LDG+H E+Q
Sbjct: 425 DYERIHKKMLKPAFIFDGRRVLDGLHNELQ 454
>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|B Chain B, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|C Chain C, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|D Chain D, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|E Chain E, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|F Chain F, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|G Chain G, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|H Chain H, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|I Chain I, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|J Chain J, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|K Chain K, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2Q3E|L Chain L, Structure Of Human Udp-Glucose Dehydrogenase Complexed
With Nadh And Udp-Glucose
pdb|2QG4|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|G Chain G, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
pdb|2QG4|H Chain H, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Product Complex With Udp-Glucuronate
Length = 467
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 97 DVSRIRAKMLYATSKDRFRRELDGIHYEIQ 126
D RI KML RR LDG+H E+Q
Sbjct: 425 DYERIHKKMLKPAFIFDGRRVLDGLHNELQ 454
>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|B Chain B, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|C Chain C, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|D Chain D, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|E Chain E, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form.
pdb|3ITK|F Chain F, Crystal Structure Of Human Udp-Glucose Dehydrogenase
Thr131ala, Apo Form
Length = 467
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 97 DVSRIRAKMLYATSKDRFRRELDGIHYEIQ 126
D RI KML RR LDG+H E+Q
Sbjct: 425 DYERIHKKMLKPAFIFDGRRVLDGLHNELQ 454
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,920,023
Number of Sequences: 62578
Number of extensions: 132117
Number of successful extensions: 200
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 35
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)