Query 032313
Match_columns 143
No_of_seqs 131 out of 1023
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:27:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 3.8E-48 8.3E-53 274.6 16.6 140 1-142 1-140 (141)
2 cd00013 ADF Actin depolymerisa 100.0 3E-40 6.5E-45 231.2 15.6 132 10-142 1-132 (132)
3 KOG1735 Actin depolymerizing f 100.0 5.9E-41 1.3E-45 235.2 11.6 136 8-143 1-141 (146)
4 PF00241 Cofilin_ADF: Cofilin/ 100.0 6.9E-39 1.5E-43 223.1 14.5 127 16-143 1-127 (127)
5 smart00102 ADF Actin depolymer 100.0 1.3E-37 2.7E-42 217.1 15.3 127 16-143 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 6.5E-36 1.4E-40 206.8 8.1 114 8-133 1-118 (122)
7 KOG1736 Glia maturation factor 99.9 2.6E-26 5.6E-31 155.8 12.1 130 12-142 8-140 (143)
8 KOG1747 Protein tyrosine kinas 99.9 1.7E-24 3.6E-29 166.8 10.0 125 9-142 4-135 (342)
9 KOG1747 Protein tyrosine kinas 99.9 5.2E-23 1.1E-27 158.5 11.8 131 9-142 172-310 (342)
10 KOG3655 Drebrins and related a 99.8 1.5E-19 3.2E-24 146.4 12.2 132 7-143 2-134 (484)
11 PF05941 Chordopox_A20R: Chord 46.0 87 0.0019 25.4 6.2 73 3-77 90-170 (334)
12 KOG2130 Phosphatidylserine-spe 39.9 24 0.00052 28.7 2.2 38 9-47 191-228 (407)
13 PF11341 DUF3143: Protein of u 37.0 32 0.0007 20.9 2.0 29 90-118 31-60 (63)
14 KOG2313 Stress-induced protein 33.2 57 0.0012 21.7 2.8 33 98-132 66-99 (100)
15 PF14157 YmzC: YmzC-like prote 31.0 72 0.0016 19.4 2.8 17 34-50 42-58 (63)
16 KOG0444 Cytoskeletal regulator 28.0 99 0.0021 28.1 4.2 49 68-119 527-575 (1255)
17 PF11663 Toxin_YhaV: Toxin wit 24.4 97 0.0021 21.9 2.9 17 86-102 90-106 (140)
18 PF03400 DDE_Tnp_IS1: IS1 tran 24.2 1.5E+02 0.0033 20.5 3.9 44 28-71 17-61 (131)
19 PF12663 DUF3788: Protein of u 23.5 1E+02 0.0022 21.4 2.9 29 13-41 91-119 (133)
20 PF13645 YkuD_2: L,D-transpept 23.3 1.1E+02 0.0025 22.4 3.3 31 64-102 44-74 (176)
21 PRK00453 rpsF 30S ribosomal pr 22.4 1.5E+02 0.0033 19.4 3.5 29 13-41 66-96 (108)
22 COG1753 Predicted antotoxin, c 22.4 88 0.0019 19.6 2.1 23 7-29 1-23 (74)
23 PTZ00248 eukaryotic translatio 21.3 4.4E+02 0.0096 21.3 6.5 52 25-76 64-115 (319)
24 PRK11470 hypothetical protein; 21.1 3.6E+02 0.0079 20.2 5.8 45 30-77 36-82 (200)
25 PF01068 DNA_ligase_A_M: ATP d 20.6 2.1E+02 0.0045 20.5 4.3 67 8-79 45-123 (202)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=3.8e-48 Score=274.64 Aligned_cols=140 Identities=69% Similarity=1.191 Sum_probs=133.0
Q ss_pred CCCCCcccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeec
Q 032313 1 MSFRGTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVT 80 (143)
Q Consensus 1 ~~~~~~~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~ 80 (143)
|.|. ||+|||+++++|+++|++|+.++.+|||+|+|+.++++|+|++++..+.+|+||++.||+++|||++|||++.+
T Consensus 1 ~~~~--m~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~ 78 (141)
T PLN03216 1 MAFK--MATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVT 78 (141)
T ss_pred Ccce--ecCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEecc
Confidence 6676 88999999999999999999887789999999999889999887666678999999999999999999999999
Q ss_pred CCCCceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 81 SENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 81 ~~~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
++|++++|++||+|||++|++|.||+|||+|++|++.|+|+++++||+|.+||+++.+.++|
T Consensus 79 ~~g~~~~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~ 140 (141)
T PLN03216 79 VDNCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA 140 (141)
T ss_pred CCCCcccCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987
No 2
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=3e-40 Score=231.19 Aligned_cols=132 Identities=52% Similarity=0.923 Sum_probs=124.0
Q ss_pred cCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecE
Q 032313 10 SGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKI 89 (143)
Q Consensus 10 sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~ 89 (143)
||++++++|.++|++++.+++++||+|+|+.++++|++++++..+.++++|.+.||+++|||++||+.+.++ |+.++|+
T Consensus 1 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~ 79 (132)
T cd00013 1 SGIKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKI 79 (132)
T ss_pred CCceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCE
Confidence 699999999999999998867999999999988999999887644689999999999999999999998766 7889999
Q ss_pred EEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 90 FFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 90 vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
+||+|||++||+|.||+|||++.+|++.++|+++++++++.+||+++.|.++|
T Consensus 80 vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 80 VFIYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEEEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999886
No 3
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=5.9e-41 Score=235.17 Aligned_cols=136 Identities=57% Similarity=1.018 Sum_probs=128.4
Q ss_pred cccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCC---CCCceEEEEeeeeecC-C-
Q 032313 8 ASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLP---DNDCRYAVYDFDFVTS-E- 82 (143)
Q Consensus 8 ~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~---~~~pry~~~~~~~~~~-~- 82 (143)
+.|||.++|+|+.+|++|+.++.+|+|+|+|+.++.+|++++.|.++.+|++|...|| .++|||++|||.|.+. .
T Consensus 1 ~aSGv~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g 80 (146)
T KOG1735|consen 1 MASGVAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESG 80 (146)
T ss_pred CCcceEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccc
Confidence 4799999999999999999998899999999999899999998888999999999999 9999999999999874 3
Q ss_pred CCceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032313 83 NCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 83 ~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
+..++|++||.|||++||+|.||+|||+|++|+++|.|+++++||||++|++++.|+++|.
T Consensus 81 ~~~~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl~ 141 (146)
T KOG1735|consen 81 NCKKSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKLG 141 (146)
T ss_pred cceeeeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHhc
Confidence 4578999999999999999999999999999999999999999999999999999999873
No 4
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=6.9e-39 Score=223.05 Aligned_cols=127 Identities=43% Similarity=0.835 Sum_probs=118.9
Q ss_pred HhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecEEEEEEc
Q 032313 16 DHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWS 95 (143)
Q Consensus 16 ~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~ 95 (143)
|||+++|++|+.+++.+|++|+|++++++|+|+++|..+.++++|.+.||+++|||++||+.++++ |+.++|++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 689999999999977999999999998999999987557899999999999999999999999866 7889999999999
Q ss_pred CCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032313 96 PDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 96 P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
|++||+|+||+|||++.+|++.+++++++++++|++||+++.|.++|.
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999873
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=1.3e-37 Score=217.10 Aligned_cols=127 Identities=46% Similarity=0.903 Sum_probs=118.2
Q ss_pred HhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecEEEEEEc
Q 032313 16 DHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWS 95 (143)
Q Consensus 16 ~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~ 95 (143)
++|.++|++|+.+++.+||+|+|+.++++|+|+++|.++.+|+||.+.||+++|||++||++++++ +++++|++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 479999999998877999999999998999999887656789999999999999999999998765 5689999999999
Q ss_pred CCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032313 96 PDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 96 P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
|++||+|.||+|||++.+|++.|+|+++.+++++.+||+++.|.++|.
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999873
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=6.5e-36 Score=206.77 Aligned_cols=114 Identities=25% Similarity=0.555 Sum_probs=101.0
Q ss_pred cccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCC---ceEEEEeeeeecCCCC
Q 032313 8 ASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDND---CRYAVYDFDFVTSENC 84 (143)
Q Consensus 8 ~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~---pry~~~~~~~~~~~~~ 84 (143)
|+|||.++++|.++|++|+.++.+|||+|+|++ ++|+|++.++ ..+|++|.+.||+++ |||++|++.
T Consensus 1 m~SGi~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~------- 70 (122)
T PTZ00152 1 MISGIRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV------- 70 (122)
T ss_pred CCCCcCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC-------
Confidence 579999999999999999998789999999975 7899988876 568999999999988 999999873
Q ss_pred ceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeE-EEEeCCcCCC
Q 032313 85 QKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHY-EIQATDPSEM 133 (143)
Q Consensus 85 ~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~-~i~a~d~~dl 133 (143)
++++||+|||++|++|.||+|||+|++|+++|.|+++ ..++++.+||
T Consensus 71 --~klvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~ 118 (122)
T PTZ00152 71 --NKIHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDV 118 (122)
T ss_pred --CCEEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhh
Confidence 4799999999999999999999999999999999763 5566666655
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.94 E-value=2.6e-26 Score=155.83 Aligned_cols=130 Identities=18% Similarity=0.382 Sum_probs=117.5
Q ss_pred cccCHhHHHHHHHHhcC-C--ceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceec
Q 032313 12 MGVADHSKSTYLELQRK-K--VHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSK 88 (143)
Q Consensus 12 i~i~~e~~~~~~~lk~~-~--~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k 88 (143)
.+|+++..+.+++++-. + ...+++++|+++..+|+++..--...+.+|+.+.||+..|||++|.|+++++||+...+
T Consensus 8 ~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~stP 87 (143)
T KOG1736|consen 8 CKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRVSTP 87 (143)
T ss_pred EEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCccccc
Confidence 56899999999998776 2 36799999999999999984222357788999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 89 IFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 89 ~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
++||||-|.+++..++|+||++|.-+.+.. ++++.+++++.+|++++++.++|
T Consensus 88 L~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e~l~E~L 140 (143)
T KOG1736|consen 88 LCFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEEWLREKL 140 (143)
T ss_pred EEEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHHHHHHHh
Confidence 999999999999999999999999999988 67889999999999999999987
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.91 E-value=1.7e-24 Score=166.79 Aligned_cols=125 Identities=26% Similarity=0.478 Sum_probs=105.9
Q ss_pred ccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCC----CCHHHHhhcC-CCCCceEEEEeeeeecCCC
Q 032313 9 SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPA----ESYDDFTASL-PDNDCRYAVYDFDFVTSEN 83 (143)
Q Consensus 9 ~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~----~~~~e~~~~L-~~~~pry~~~~~~~~~~~~ 83 (143)
++||..++++.+.|++-+.++ +|.+...|++ +++++..+.+.. .+|+.++..| .+.+|||++|+.+
T Consensus 4 QtGI~A~e~l~~~l~~~~~~k-~R~ikIvI~n--Eql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrld------ 74 (342)
T KOG1747|consen 4 QTGIRATEALKKFLNEAKNGK-LRLIKIVIEN--EQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLD------ 74 (342)
T ss_pred ccccchHHHHHHHHHhcccCc-eEEEEEEEec--ccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeec------
Confidence 789999999999999999987 9999888887 578876655543 4566766654 5679999999986
Q ss_pred CceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCC--eeEEEEeCCcCCCCHHHHHhhh
Q 032313 84 CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDG--IHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 84 ~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~g--i~~~i~a~d~~dl~~~~i~~~~ 142 (143)
++..+|+||+|+||+||||+|||||||+++|++++++ +..+.++++++||+...+.+.+
T Consensus 75 s~~~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 75 SKNAEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred CCCccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 2445999999999999999999999999999999986 4569999999999999887765
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.90 E-value=5.2e-23 Score=158.55 Aligned_cols=131 Identities=21% Similarity=0.398 Sum_probs=114.2
Q ss_pred ccCcc--cCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCce
Q 032313 9 SSGMG--VADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK 86 (143)
Q Consensus 9 ~sGi~--i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 86 (143)
..||. ++++..+|+++|+.++ .+||+|+||..+++|.|..+.. ..+.+||...+|.+.|||.+|.|.|++. |...
T Consensus 172 l~Gva~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~~-~~e~sdL~s~vP~d~prY~ff~~~ht~e-GD~~ 248 (342)
T KOG1747|consen 172 LQGVAFPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTDT-CTEPSDLPSRVPRDGPRYHFFLFKHTHE-GDPL 248 (342)
T ss_pred ccceeecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccCC-CCChHHhhhhcCCCCCceEEEecccccC-CCCc
Confidence 35554 8999999999999987 9999999998889999988653 4678999999999999999999998755 5567
Q ss_pred ecEEEEEEcCC-CCCcchhhHhhhhHHHHHhhcC---C--eeEEEEeCCcCCCCHHHHHhhh
Q 032313 87 SKIFFIAWSPD-VSRIRAKMLYATSKDRFRRELD---G--IHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 87 ~k~vfI~w~P~-~a~vk~KMlYas~k~~l~~~l~---g--i~~~i~a~d~~dl~~~~i~~~~ 142 (143)
..++|||.||. +|+||+||+|||+|..|...+. | |..+|++.|.+||+++.+.+.+
T Consensus 249 es~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~ 310 (342)
T KOG1747|consen 249 ESIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEEL 310 (342)
T ss_pred eeEEEEEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhh
Confidence 89999999999 9999999999999988877765 4 4569999999999999887754
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.82 E-value=1.5e-19 Score=146.38 Aligned_cols=132 Identities=17% Similarity=0.304 Sum_probs=116.2
Q ss_pred ccccCcccCHhHHHHHHHHhcCCc-eeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCc
Q 032313 7 NASSGMGVADHSKSTYLELQRKKV-HRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQ 85 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~~-~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~ 85 (143)
|...|-.=..+|+++|+.+..+.. ..|+||++++..+.+.+..+| ..++++|++.+....-.|+++++. +.++.
T Consensus 2 ~~l~~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~--~~~~~e~~~df~~~kv~yg~~rv~---D~~s~ 76 (484)
T KOG3655|consen 2 MPLNTTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSG--EGGLEEFLGDFDSGKVMYGFCRVK---DPMSG 76 (484)
T ss_pred CcccccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeeccc--cccHHHHhhhcccCceeEEEEEec---CcccC
Confidence 444444456789999999988754 889999999876666665554 578999999999999999999985 77889
Q ss_pred eecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032313 86 KSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 86 ~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
++|||||.||++++++-+|..+|+++..+++.|+|+|++|+|++.+||+++.|+++|+
T Consensus 77 l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~ls 134 (484)
T KOG3655|consen 77 LPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKLS 134 (484)
T ss_pred CcceEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999874
No 11
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=45.99 E-value=87 Score=25.44 Aligned_cols=73 Identities=11% Similarity=0.041 Sum_probs=44.3
Q ss_pred CCCcccccC----cccCHhHHHHHHHHhcCC-ceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhc---CCCCCceEEEE
Q 032313 3 FRGTNASSG----MGVADHSKSTYLELQRKK-VHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTAS---LPDNDCRYAVY 74 (143)
Q Consensus 3 ~~~~~~~sG----i~i~~e~~~~~~~lk~~~-~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~---L~~~~pry~~~ 74 (143)
++|+|+..| +.+++++.++.+.+-..- .++++-|..=+ +..++++......++.+++.. ..-+...|+-.
T Consensus 90 ~~Gsm~elgSG~~~~i~~~~k~~~d~i~~~~~di~FlRFv~f~--~~wilED~fS~~~~p~~~L~~a~~~Gl~~~p~l~i 167 (334)
T PF05941_consen 90 SKGSMMELGSGNEVQIDEEMKEACDAILADYPDIEFLRFVYFK--NRWILEDAFSKYSSPIEILKLASEEGLNVVPYLRI 167 (334)
T ss_pred ECCcEEEecCCcccCCCHHHHHHHHHHHhhCCCceEEEEEEEc--CeEEEeeeccccCCHHHHHHHHHHHhhccCceEEE
Confidence 367777533 569999999999986653 55555555444 567888766554545555332 22233445555
Q ss_pred eee
Q 032313 75 DFD 77 (143)
Q Consensus 75 ~~~ 77 (143)
+..
T Consensus 168 ~V~ 170 (334)
T PF05941_consen 168 RVE 170 (334)
T ss_pred EEc
Confidence 543
No 12
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=39.89 E-value=24 Score=28.66 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=30.0
Q ss_pred ccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEE
Q 032313 9 SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVV 47 (143)
Q Consensus 9 ~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v 47 (143)
-+||.|+|..-.|++.|-.|+ .||++|--....+.|++
T Consensus 191 GtsiHIDPlgTSAWNtll~Gh-KrW~LfPp~~p~~lvkv 228 (407)
T KOG2130|consen 191 GTSIHIDPLGTSAWNTLLQGH-KRWVLFPPGTPPELVKV 228 (407)
T ss_pred CceeEECCcchHHHHHHhhcc-ceeEEcCCCCCCCceee
Confidence 356889999999999999987 78999976654444554
No 13
>PF11341 DUF3143: Protein of unknown function (DUF3143); InterPro: IPR021489 This family of proteins has no known function.
Probab=36.95 E-value=32 Score=20.95 Aligned_cols=29 Identities=10% Similarity=0.293 Sum_probs=25.4
Q ss_pred EEEEEcCCC-CCcchhhHhhhhHHHHHhhc
Q 032313 90 FFIAWSPDV-SRIRAKMLYATSKDRFRREL 118 (143)
Q Consensus 90 vfI~w~P~~-a~vk~KMlYas~k~~l~~~l 118 (143)
+.|.|.+.+ ..++...-|+-+++.|.+++
T Consensus 31 L~V~y~~~g~~~~~rsF~YsLSR~DvE~Ai 60 (63)
T PF11341_consen 31 LVVRYLQSGPQDIQRSFPYSLSREDVEAAI 60 (63)
T ss_pred EEEEEccCCCcccEEeccCcCCHHHHHHHH
Confidence 578898888 88889999999999998875
No 14
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=33.21 E-value=57 Score=21.70 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=21.4
Q ss_pred CCCcchhhHhhhhHHHHHhhcCCee-EEEEeCCcCC
Q 032313 98 VSRIRAKMLYATSKDRFRRELDGIH-YEIQATDPSE 132 (143)
Q Consensus 98 ~a~vk~KMlYas~k~~l~~~l~gi~-~~i~a~d~~d 132 (143)
+..-|.||+|..-++.+... |+| ..|.+..|+|
T Consensus 66 s~v~RHRlVy~~L~eEl~~~--gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 66 SLVKRHRLVYKALKEELAGT--GVHALSIMAKTPSE 99 (100)
T ss_pred cHHHHHHHHHHHHHHHhhcc--ceeEEEeeccCCCC
Confidence 55679999995444444332 466 4788877765
No 15
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=30.95 E-value=72 Score=19.41 Aligned_cols=17 Identities=41% Similarity=0.673 Sum_probs=14.1
Q ss_pred EEEEEeCCCcEEEEeeC
Q 032313 34 VIFKIDEKKKEVVVEKT 50 (143)
Q Consensus 34 iif~i~~~~~~i~v~~~ 50 (143)
=||+++.++++|+|.+.
T Consensus 42 KIfkyd~~tNei~L~KE 58 (63)
T PF14157_consen 42 KIFKYDEDTNEITLKKE 58 (63)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEeCCCCCeEEEEEe
Confidence 37999999999998764
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=27.97 E-value=99 Score=28.10 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=38.4
Q ss_pred CceEEEEeeeeecCCCCceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcC
Q 032313 68 DCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELD 119 (143)
Q Consensus 68 ~pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~ 119 (143)
.-||+++.-... +.| .-.|-..||+++.|++-.+|--|-+.-.|++.|+
T Consensus 527 aDcYiVLKT~~d-dsG--~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 527 ADCYIVLKTTRD-DSG--QLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred ccEEEEEEeecc-ccc--ccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 347999876532 333 4567788999999999999988888888888885
No 17
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=24.45 E-value=97 Score=21.93 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=14.6
Q ss_pred eecEEEEEEcCCCCCcc
Q 032313 86 KSKIFFIAWSPDVSRIR 102 (143)
Q Consensus 86 ~~k~vfI~w~P~~a~vk 102 (143)
.+|+|++.|+-|....|
T Consensus 90 ~skiIv~aWvNDe~tlR 106 (140)
T PF11663_consen 90 ESKIIVYAWVNDEQTLR 106 (140)
T ss_pred ccCEEEEEEeCCCcchh
Confidence 56999999999987766
No 18
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=24.22 E-value=1.5e+02 Score=20.54 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=31.3
Q ss_pred CCceeEEEEEEeCCCcEEEEeeCCCC-CCCHHHHhhcCCCCCceE
Q 032313 28 KKVHRYVIFKIDEKKKEVVVEKTGGP-AESYDDFTASLPDNDCRY 71 (143)
Q Consensus 28 ~~~~~~iif~i~~~~~~i~v~~~~~~-~~~~~e~~~~L~~~~pry 71 (143)
+++..|+.+.++.++..|+--..|++ ..++..|.+.|+.-++.+
T Consensus 17 K~n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~ 61 (131)
T PF03400_consen 17 KKNKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGF 61 (131)
T ss_pred CCCceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceE
Confidence 33477999999988777765444543 356888999887666554
No 19
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=23.49 E-value=1e+02 Score=21.38 Aligned_cols=29 Identities=7% Similarity=0.197 Sum_probs=23.6
Q ss_pred ccCHhHHHHHHHHhcCCceeEEEEEEeCC
Q 032313 13 GVADHSKSTYLELQRKKVHRYVIFKIDEK 41 (143)
Q Consensus 13 ~i~~e~~~~~~~lk~~~~~~~iif~i~~~ 41 (143)
.+++.+++.|++-+....-+|+.|.+.++
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~~ 119 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRSE 119 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCCh
Confidence 47888899998887776688999988763
No 20
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=23.28 E-value=1.1e+02 Score=22.40 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCCCceEEEEeeeeecCCCCceecEEEEEEcCCCCCcc
Q 032313 64 LPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIR 102 (143)
Q Consensus 64 L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk 102 (143)
+|..++||.|+|+. ..++++=+||-.+...-
T Consensus 44 ~pS~~~R~~v~Dl~--------~~~~l~~~~VaHG~gsg 74 (176)
T PF13645_consen 44 KPSGEKRFFVIDLK--------KGKLLYNTLVAHGRGSG 74 (176)
T ss_pred CCCCCCeEEEEECC--------CCEEEEeeeeecccCCC
Confidence 68889999999985 45788888988865433
No 21
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=22.36 E-value=1.5e+02 Score=19.42 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=17.6
Q ss_pred ccCHhHHHHHH-HHhcCCc-eeEEEEEEeCC
Q 032313 13 GVADHSKSTYL-ELQRKKV-HRYVIFKIDEK 41 (143)
Q Consensus 13 ~i~~e~~~~~~-~lk~~~~-~~~iif~i~~~ 41 (143)
..+++++..++ .++.+.. .||++++++..
T Consensus 66 ~~~~~~i~el~~~l~~~~~VlR~~~vk~~~~ 96 (108)
T PRK00453 66 EAPPAAIAELERLFRINEDVLRFLTVKVEEA 96 (108)
T ss_pred EeCHHHHHHHHHHhCCCCCeEEEEEEEeccc
Confidence 44666666665 4555443 77777776653
No 22
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=22.35 E-value=88 Score=19.59 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=18.3
Q ss_pred ccccCcccCHhHHHHHHHHhcCC
Q 032313 7 NASSGMGVADHSKSTYLELQRKK 29 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~ 29 (143)
|.+-.|.|++|+-+.+.++|.++
T Consensus 1 ~~~kTItI~ddvYe~L~kmK~g~ 23 (74)
T COG1753 1 MPTKTITISDDVYEKLVKMKRGK 23 (74)
T ss_pred CCcceeeecHHHHHHHHHHHccc
Confidence 34556889999999999998654
No 23
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=21.26 E-value=4.4e+02 Score=21.28 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=39.1
Q ss_pred HhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEee
Q 032313 25 LQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDF 76 (143)
Q Consensus 25 lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~ 76 (143)
++.|......|++++.++..|.|....-...+|+++.+.++......+.+..
T Consensus 64 vkvGd~v~vkVl~VD~ekg~IdLS~K~v~~~pw~~~~e~~~~g~~v~~~V~~ 115 (319)
T PTZ00248 64 IRVGRHEVVVVLRVDKEKGYIDLSKKRVSPEDIEACEEKFSKSKKVHSIMRH 115 (319)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEEEeeecccchHHHHHHhCcCCCEEEEEEEE
Confidence 4677778899999998888888764433456899999999877666665554
No 24
>PRK11470 hypothetical protein; Provisional
Probab=21.15 E-value=3.6e+02 Score=20.18 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=33.0
Q ss_pred ceeEEEEEEeCCCcEEEEeeCCC--CCCCHHHHhhcCCCCCceEEEEeee
Q 032313 30 VHRYVIFKIDEKKKEVVVEKTGG--PAESYDDFTASLPDNDCRYAVYDFD 77 (143)
Q Consensus 30 ~~~~iif~i~~~~~~i~v~~~~~--~~~~~~e~~~~L~~~~pry~~~~~~ 77 (143)
++-.||+..+++ .-++++...+ +..++++|++. ....+|+++|+.
T Consensus 36 sHvGII~~~~~~-~~~VlEA~~~~vr~TpLs~fi~r--~~~g~i~v~Rl~ 82 (200)
T PRK11470 36 NHVGIIIGHNGE-DFLVAESRVPLSTVTTLSRFIKR--SANQRYAIKRLD 82 (200)
T ss_pred ceEEEEEEEcCC-ceEEEEecCCceEEeEHHHHHhc--CcCceEEEEEec
Confidence 366888888764 6788877654 23678888886 347899999995
No 25
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=20.59 E-value=2.1e+02 Score=20.46 Aligned_cols=67 Identities=15% Similarity=0.342 Sum_probs=36.2
Q ss_pred cccCcccCH---hHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCC---------CCCceEEEEe
Q 032313 8 ASSGMGVAD---HSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLP---------DNDCRYAVYD 75 (143)
Q Consensus 8 ~~sGi~i~~---e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~---------~~~pry~~~~ 75 (143)
|-+|-.++. ++.+++..........+|+ |+|-+.++.......++.++...+. ...++|.+||
T Consensus 45 SR~g~~~~~~~~~l~~~l~~~~~~~~~~~vL-----DGElv~~d~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~vFD 119 (202)
T PF01068_consen 45 SRNGKDITSQFPELAEALRELLFPDGPDFVL-----DGELVVLDPNTGSPLPFQELSGRLNRRSKKIPEQSEPLQFVVFD 119 (202)
T ss_dssp ETTSSB-GGGHHHHHHHHHHHBCTSCTEEEE-----EEEEEEBETTTSSBCCHHHHHHHHBHSSSCHHHHHSCEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHhcCCCCceEE-----EEEEEEEecCCCcchhHHHHhhhhhhhcccchhccCcEEEEEEE
Confidence 345566554 4555555443332234444 3355555543333566777665541 3578999999
Q ss_pred eeee
Q 032313 76 FDFV 79 (143)
Q Consensus 76 ~~~~ 79 (143)
+-+-
T Consensus 120 il~l 123 (202)
T PF01068_consen 120 ILYL 123 (202)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8653
Done!