Query 032313
Match_columns 143
No_of_seqs 131 out of 1023
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7s_A Actin depolymerizing fa 100.0 1.1E-45 3.7E-50 260.5 15.9 137 7-143 3-139 (139)
2 2i2q_A Cofilin; N-terminal ser 100.0 3.6E-45 1.2E-49 257.1 15.2 135 7-143 1-135 (137)
3 1cfy_A Cofilin; actin-binding, 100.0 6.8E-45 2.3E-49 257.4 15.8 135 7-142 1-136 (143)
4 2kvk_A Actin severing and dyna 100.0 1.4E-44 4.7E-49 256.4 16.0 133 7-142 1-133 (144)
5 2kd5_A ADF H, actin severing a 100.0 6E-44 2E-48 253.0 15.2 133 7-142 1-133 (144)
6 2xfa_A Actin depolymerization 100.0 1.9E-44 6.4E-49 256.6 12.3 135 7-143 4-145 (148)
7 1cnu_A Actophorin, ADF, cofili 100.0 2.1E-43 7E-48 248.1 16.8 133 10-143 1-133 (137)
8 2lj8_A Cofilin/actin depolymer 100.0 1.9E-43 6.6E-48 250.5 16.4 134 5-142 7-140 (144)
9 1tvj_A Cofilin; ADF, actin bin 100.0 1.2E-42 4.3E-47 251.6 16.8 135 8-143 1-154 (166)
10 1vkk_A GMF-gamma, GLIA maturat 100.0 6.9E-43 2.4E-47 250.1 15.2 134 7-142 15-150 (154)
11 1m4j_A A6 gene product, twinfi 100.0 5E-42 1.7E-46 242.6 11.3 131 7-143 1-139 (142)
12 1v6f_A MGMF-beta, GLIA maturat 100.0 5.4E-41 1.9E-45 239.6 16.3 132 9-142 11-144 (151)
13 1ak6_A Destrin; actin depolyme 100.0 2.6E-42 9E-47 251.6 7.4 136 7-143 9-162 (174)
14 2w0i_A Twinfilin-2; cytoskelet 100.0 1.9E-40 6.4E-45 232.7 15.0 127 12-142 2-134 (135)
15 2vac_A Twinfilin-2; transferas 100.0 7.7E-41 2.6E-45 234.4 11.7 126 9-140 1-133 (134)
16 2d8b_A Twinfilin-1; cell-free 100.0 3.5E-40 1.2E-44 238.7 14.5 131 8-142 21-159 (166)
17 1hqz_1 ABP1P, actin-binding pr 100.0 6.3E-40 2.2E-44 231.4 14.7 129 7-142 1-135 (141)
18 3daw_B Twinfilin-1, protein A6 100.0 2.3E-38 8E-43 228.6 16.3 131 9-143 17-155 (164)
19 1x67_A Drebrin-like protein; c 100.0 1.7E-38 6E-43 225.4 15.1 133 5-142 1-139 (146)
20 3q2b_A Pfadf1, cofilin/actin-d 100.0 6.3E-40 2.1E-44 227.1 6.0 117 7-135 2-122 (124)
21 2l72_A Tgadf, actin depolymeri 100.0 1.5E-38 5.1E-43 224.1 11.1 116 8-136 22-138 (139)
22 1t3y_A Coactosin-like protein; 100.0 6.5E-35 2.2E-39 206.0 13.3 122 15-142 6-128 (141)
23 2ff3_A Gelsolin; protein-prote 85.2 7.2 0.00025 26.9 10.4 99 4-122 16-114 (150)
24 3cip_G Gelsolin; actin, dictyo 64.0 29 0.00098 23.0 7.9 87 20-122 9-95 (128)
25 1t44_G Chimera of gelsolin dom 62.7 33 0.0011 23.3 7.6 86 20-121 6-91 (147)
26 3tu5_B Gelsolin, protein cordo 45.8 86 0.003 23.8 7.3 86 20-121 24-109 (297)
27 2vik_A Villin 14T; actin-bindi 35.8 92 0.0031 20.4 7.5 79 27-120 12-90 (126)
28 2p2e_A Putative Fe-S biosynthe 34.8 49 0.0017 21.8 3.9 27 12-39 5-31 (128)
29 2raq_A Conserved protein MTH88 26.8 1.2E+02 0.0042 19.1 5.1 52 17-69 23-74 (97)
30 2ygw_A Malonyl-COA decarboxyla 26.2 29 0.001 28.2 1.9 35 54-94 191-225 (460)
31 2fh1_A Gelsolin; calcium, cont 25.1 2.3E+02 0.0077 21.5 6.9 74 32-121 8-82 (344)
32 4b9x_A TDRD1, tudor domain-con 24.3 1.9E+02 0.0065 20.4 6.7 40 11-50 140-179 (226)
33 3vbh_A EV71, genome polyprotei 23.3 1.1E+02 0.0037 23.3 4.5 16 88-103 149-164 (297)
34 2eo2_A Adult MALE hypothalamus 22.1 47 0.0016 19.8 1.8 16 125-140 42-57 (71)
35 1ncq_A Coat protein VP1; HRV, 21.8 1.2E+02 0.0042 22.9 4.5 15 89-103 147-161 (289)
36 4a8x_B HOOK-like, isoform A; t 21.0 24 0.00081 18.7 0.3 8 91-98 22-29 (40)
37 4b9w_A TDRD1, tudor domain-con 20.2 2.2E+02 0.0076 19.6 6.6 40 11-50 140-179 (201)
No 1
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=100.00 E-value=1.1e-45 Score=260.50 Aligned_cols=137 Identities=64% Similarity=1.163 Sum_probs=119.1
Q ss_pred ccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCce
Q 032313 7 NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK 86 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 86 (143)
|++|||.++++|+++|++++.++.+|||+|+|++++++|+|+++|+...+|++|.+.||+++|||++||+++++++|+++
T Consensus 3 ~~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~ 82 (139)
T 1f7s_A 3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQK 82 (139)
T ss_dssp --CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEE
T ss_pred cCccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccCcc
Confidence 78999999999999999999976799999999998889999998876668999999999999999999999999999999
Q ss_pred ecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032313 87 SKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 87 ~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
+|++||+|||++||+|.||+|||+|++|++.|+|++++|+|+|++||+++.|.++++
T Consensus 83 ~k~vfI~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~ 139 (139)
T 1f7s_A 83 SKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139 (139)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred cCEEEEEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999874
No 2
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-45 Score=257.12 Aligned_cols=135 Identities=44% Similarity=0.790 Sum_probs=116.0
Q ss_pred ccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCce
Q 032313 7 NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK 86 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 86 (143)
||+|||.++++|+++|++++.++.++||+|+|+.++++|++++ +..+.+|++|.+.||+++|||++||+++++.+| .+
T Consensus 1 ~~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~-~~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~ 78 (137)
T 2i2q_A 1 MSFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEG-VR 78 (137)
T ss_dssp -CCSCCEECHHHHHHHHHHHHTCCCSEEEEEECTTSSEEEEEE-EECCCCHHHHHHTSCSSSCEEEEEEEEECSSSS-CE
T ss_pred CCCCCcccCHHHHHHHHHHHCCCCceEEEEEECCCCcEEEEec-CCCCCCHHHHHHhCCCcCceEEEEEeeeecCCC-Cc
Confidence 7899999999999999999998779999999998889999987 545678999999999999999999999988877 89
Q ss_pred ecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032313 87 SKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 87 ~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
+|++||+|||++|++|+||+|||+|++|++.|+|++++|+|+|++||+++.|.++|.
T Consensus 79 ~k~vfI~w~Pd~a~vk~KMlyassk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl~ 135 (137)
T 2i2q_A 79 NKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKVT 135 (137)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCCCCCEEEEECCCC------------
T ss_pred cCEEEEEECCCCCChhHhhhhHHHHHHHHHHhcCceEEEEECChHHcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999873
No 3
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=100.00 E-value=6.8e-45 Score=257.38 Aligned_cols=135 Identities=41% Similarity=0.777 Sum_probs=124.5
Q ss_pred ccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCC-Cc
Q 032313 7 NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSEN-CQ 85 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~-~~ 85 (143)
||+|||.++++|+++|++++.++.++||+|+|+.++++|+|+++|. ..+|++|.+.||+++|||++||+++++.+| ++
T Consensus 1 ~~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~-~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~ 79 (143)
T 1cfy_A 1 MSRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETST-DPSYDAFLEKLPENDCLYAIYDFEYEINGNEGK 79 (143)
T ss_dssp -----CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEEEC-CCCHHHHHTTSCTTCCEEEEEEEEEECSSSCCE
T ss_pred CCcCCcEeCHHHHHHHHHHHCCCCeeEEEEEEcCCCCEEEEEecCC-CCCHHHHHHhCCCCCcEEEEEEeeeecCCCccc
Confidence 7899999999999999999998779999999998889999998775 578999999999999999999999998888 89
Q ss_pred eecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 86 KSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 86 ~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
++|++||+|||++||+|.||+|||+|++|++.|+|++++|+++|++||+++.|.+++
T Consensus 80 ~~k~vfI~w~Pd~a~v~~KmlyAssk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl 136 (143)
T 1cfy_A 80 RSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERV 136 (143)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTTCCEEEEESSGGGGSHHHHHHHH
T ss_pred ccCEEEEEECCCCCChhheeehHhhHHHHHHhcCCceEEEEeCChHHCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987
No 4
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=100.00 E-value=1.4e-44 Score=256.36 Aligned_cols=133 Identities=29% Similarity=0.537 Sum_probs=125.2
Q ss_pred ccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCce
Q 032313 7 NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK 86 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 86 (143)
|++|||.++++|+++|++||.++ .|||+|+|+.++++|+|+.+++.+.+|++|.+.||+++|||++||+.+++. ++.+
T Consensus 1 Ma~SGv~v~de~~~af~~lk~~k-~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~prY~~y~~~~~~~-~~~~ 78 (144)
T 2kvk_A 1 MAISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDA-GSKR 78 (144)
T ss_dssp CCCCCCEECHHHHHHHHHHHTTS-SSEEEEEECTTSCEEEEEEEECTTCCHHHHHHTCCTTSCCEEEEEEEEEET-TEEE
T ss_pred CCcCCcccCHHHHHHHHHHhcCC-ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhCCccCceEEEEEeeeccC-CCCc
Confidence 89999999999999999999976 899999999999999999888777899999999999999999999999765 4578
Q ss_pred ecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 87 SKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 87 ~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
+|++||+|||++||+|.||+|||+|++|++.|+| +++|||+|++||+++.|.+++
T Consensus 79 ~k~vfI~w~Pd~a~vk~KMlyassk~~lk~~l~~-~~~i~a~d~~el~~e~i~~kl 133 (144)
T 2kvk_A 79 EKLILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQANDESGLDAEEIIRKV 133 (144)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCTT-EEEEEESSGGGGCHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCC-EEEEEECChHHCCHHHHHHHH
Confidence 9999999999999999999999999999999988 579999999999999999986
No 5
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=100.00 E-value=6e-44 Score=253.03 Aligned_cols=133 Identities=29% Similarity=0.537 Sum_probs=126.4
Q ss_pred ccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCce
Q 032313 7 NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK 86 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 86 (143)
||+|||.++++|+++|++++.++ ++||+|+|+.++++|+|+++|..+.+|++|.+.||+++|||++||+.+++++ +++
T Consensus 1 Ms~SGi~vs~e~~~a~~~~~~~~-~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~-~~~ 78 (144)
T 2kd5_A 1 MAISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAG-SKR 78 (144)
T ss_dssp CCCCSCBCCHHHHHHHHHHTTTS-SSEEEEEECSSSCBEEEEEECCSCCCHHHHTTTTSCSSCEEEEEEEEEESSS-CEE
T ss_pred CCccCCCcCHHHHHHHHHHHcCC-eeEEEEEECCCCCEEEEEeccCCCCCHHHHHHhCCccCcEEEEEEEEecCCC-CCc
Confidence 77799999999999999999988 9999999998889999999877678999999999999999999999998776 578
Q ss_pred ecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 87 SKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 87 ~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
+|++||+|||++||+|.||+|||+|++|++.|+|+ ++|+++|++||+++.|.++|
T Consensus 79 ~k~vfI~w~Pd~a~vk~KMlyAssk~~l~~~l~g~-~~i~a~d~~el~~~~i~~kl 133 (144)
T 2kd5_A 79 EKLILIQWIPDTARPREKMMYSASRDALSSVSEGY-LPIQANDESGLDAEEIIRKV 133 (144)
T ss_dssp EEEEEEEECCCCSCSHHHHHHHHHGGGGTTTTCCS-EEEEESSSSSSSHHHHHHHH
T ss_pred cCEEEEEECCCCCCHHHHhhhHHHHHHHHHHhCCe-EEEEECChHHCCHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999987
No 6
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.9e-44 Score=256.57 Aligned_cols=135 Identities=29% Similarity=0.530 Sum_probs=123.9
Q ss_pred cc-ccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEe------eCCCCCCCHHHHhhcCCCCCceEEEEeeeee
Q 032313 7 NA-SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVE------KTGGPAESYDDFTASLPDNDCRYAVYDFDFV 79 (143)
Q Consensus 7 ~~-~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~------~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~ 79 (143)
|| +|||.++++|+++|++++.++.+|||+|+| .++++|+++ ++|....+|++|.+.||+++|||++||++++
T Consensus 4 msm~sGi~v~~e~~~af~~~k~~k~~~~ii~~i-~~~~~i~v~~~~~~~~~g~~~~~~~~~~~~L~~~~prY~~y~~~~~ 82 (148)
T 2xfa_A 4 GSMVSGVNVSDECIYEFNRLKVKHLNKYIIYKI-ENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMPIP 82 (148)
T ss_dssp --CCCCCEECHHHHHHHHHHHTSCCCSEEEEEE-ETTTEEEEEEEECCTTCCCHHHHHHHHHHTCBTTBCEEEEEEEEEC
T ss_pred ccccCCCeeCHHHHHHHHHHHCCCceEEEEEEE-CCCCEEEEEecccccccCCCCCCHHHHHHhCCcCCcEEEEEecccc
Confidence 55 599999999999999999998799999999 556899998 5554346799999999999999999999999
Q ss_pred cCCCCceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032313 80 TSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 80 ~~~~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
+++|++++||+||+|||++|++|.||+|||+|++|++.|+|++++|||+| +||+++.|.++++
T Consensus 83 ~~~g~~~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~i~atd-~el~~~~i~~k~~ 145 (148)
T 2xfa_A 83 TPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLEITC-DINEFEEELKAII 145 (148)
T ss_dssp CSSCCCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCSEEEEECS-CGGGHHHHHHHHH
T ss_pred cCCCCcccCEEEEEECCCCCChHHHhHhHHHHHHHHHHhcCCeEEEEEEc-ccCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999 9999999999873
No 7
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=100.00 E-value=2.1e-43 Score=248.05 Aligned_cols=133 Identities=43% Similarity=0.869 Sum_probs=125.8
Q ss_pred cCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecE
Q 032313 10 SGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKI 89 (143)
Q Consensus 10 sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~ 89 (143)
|||.++++|.++|++|+.++.++||+|+|+.++++|+++++|....+|++|.+.||+++|||++||+++++.+| .++|+
T Consensus 1 SGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~~k~ 79 (137)
T 1cnu_A 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGG-QRNKI 79 (137)
T ss_dssp -CCEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEEEEEEEEEEETTE-EEEEE
T ss_pred CCCccCHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEeccCCCCCHHHHHHhCCCCCceEEEEEeeeecCCC-CccCE
Confidence 79999999999999999987799999999998899999998866689999999999999999999999988887 89999
Q ss_pred EEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032313 90 FFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 90 vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
+||+|||++||+|+||+|||+|++|++.|+|++++|+|++++||+++.|.+++.
T Consensus 80 vfI~w~Pd~a~v~~Kmlyassk~~l~~~l~g~~~~i~a~~~~el~~~~i~~kl~ 133 (137)
T 1cnu_A 80 TFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK 133 (137)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHSTTCCEEEEECSTTTTSHHHHHHHHT
T ss_pred EEEEECCCCCChHHheehHHhHHHHHHHhcCceEEEEECChHHCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999874
No 8
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=100.00 E-value=1.9e-43 Score=250.49 Aligned_cols=134 Identities=34% Similarity=0.617 Sum_probs=121.7
Q ss_pred CcccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCC
Q 032313 5 GTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENC 84 (143)
Q Consensus 5 ~~~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~ 84 (143)
-+||+|||.+++||+++|++||.++ .||++|+|+++ ++++++..+..+.+|++|.+.||+++|||++|+|.+.+.+|
T Consensus 7 ~~Ma~SGi~vsde~~~af~~lk~~k-~~~ii~~i~d~-~~~vv~~~~~~~~~~de~~~~L~~~~prY~~y~~~~~~~~~- 83 (144)
T 2lj8_A 7 HHMAMSGVSVADECVTALNDLRHKK-SRYVIMHIVDQ-KSIAVKTIGERGANFDQFIEAIDKNVPCYAAFDFEYTTNDG- 83 (144)
T ss_dssp --CCCSSCEECHHHHHHHHHHTTTS-SSEEEEEEETT-TEEEEEEECSSCCCHHHHHHHCCSSSCEEEEEEEEECSSSS-
T ss_pred CccccCCceeCHHHHHHHHHHhcCC-ceEEEEEEECC-cEEEEEecCCCCCCHHHHHHhCcccCCcceeeeeeeccCCC-
Confidence 3699999999999999999999876 89999999976 56666666767789999999999999999999999987665
Q ss_pred ceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 85 QKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 85 ~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
.++|||||+|||++||+|+||+|||+|++|++.|+|++ +|||+|++||+++.|.++|
T Consensus 84 ~~~k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~~~~-~i~a~d~~el~~e~i~~kl 140 (144)
T 2lj8_A 84 PRDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQANDASGLDFEEISRKV 140 (144)
T ss_dssp SEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHTTTSE-EEECCGGGTSCHHHHHHHH
T ss_pred CcccEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCee-EEEeCChHHCCHHHHHHHH
Confidence 67899999999999999999999999999999999886 8999999999999999987
No 9
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus}
Probab=100.00 E-value=1.2e-42 Score=251.56 Aligned_cols=135 Identities=32% Similarity=0.660 Sum_probs=124.8
Q ss_pred cccCcccCHhHHHHHHHHhcCC---------ceeEEEEEEeCCCcEEEEee--------CCCC-CCCHHHHhhcCCCCCc
Q 032313 8 ASSGMGVADHSKSTYLELQRKK---------VHRYVIFKIDEKKKEVVVEK--------TGGP-AESYDDFTASLPDNDC 69 (143)
Q Consensus 8 ~~sGi~i~~e~~~~~~~lk~~~---------~~~~iif~i~~~~~~i~v~~--------~~~~-~~~~~e~~~~L~~~~p 69 (143)
++|||.++++|+++|++|+.++ .+|||+|+|++++++|++++ .+.+ ..+|++|++.||+++|
T Consensus 1 m~SGi~vs~e~~~~f~~~k~~k~~~~~~~~~~~~~iifki~~~~~~iivee~~~~~~~~~~~~~~~~~~ef~~~L~~~~p 80 (166)
T 1tvj_A 1 MASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDC 80 (166)
T ss_dssp CCCCCEECHHHHHHHHHHHSCCCSCHHHHTTCEEEEEEEECTTSSEEEEEEEEEEETTTBTTTBSCHHHHHHHHCCTTSC
T ss_pred CCCCCeeCHHHHHHHHHHhcCCCccccccccceeEEEEEECCCCcEEEEeccccccccccCccccCCHHHHHHhCCCCCc
Confidence 5799999999999999999886 48999999999888999986 3432 5789999999999999
Q ss_pred eEEEEeeeeecCCCCceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCC-CHHHHHhhhC
Q 032313 70 RYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEM-DLEVIRDRAR 143 (143)
Q Consensus 70 ry~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl-~~~~i~~~~~ 143 (143)
||++||++|.+.+| +++||+||+|||++|++|.||+|||+|++|++.|+|++++|||+|++|| ++++|.++|.
T Consensus 81 rY~vy~~~~~~~~~-~~~klvfI~W~Pd~a~vr~KMlYAssk~~lk~~l~gi~~~i~atd~~el~~~~~i~ekl~ 154 (166)
T 1tvj_A 81 RYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLG 154 (166)
T ss_dssp EEEEEEEEEEESSC-EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCCEEEESSGGGTCCHHHHHHHHT
T ss_pred EEEEEeccccCCCC-CccCEEEEEECCCCCCHHHhhHHHHhHHHHHHHhcCCeEEEEECChHHcCCHHHHHHHhC
Confidence 99999999988875 8999999999999999999999999999999999999999999999999 9999999974
No 10
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=100.00 E-value=6.9e-43 Score=250.14 Aligned_cols=134 Identities=20% Similarity=0.333 Sum_probs=124.2
Q ss_pred ccccCcccCHhHHHHHHHHhcCC--ceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCC
Q 032313 7 NASSGMGVADHSKSTYLELQRKK--VHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENC 84 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~--~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~ 84 (143)
.+.+|+.++++|+++|++|+.++ .++||+|+|+.++++|+|+++++ +.+|++|.+.||+++|||++|||++++++|+
T Consensus 15 ~~~~~~~v~~e~~~a~~~lk~~k~~~~~~iifkId~~~~~I~v~~~~~-~~~~~e~~~~Lp~~~pRY~vy~~~~~~~~g~ 93 (154)
T 1vkk_A 15 DSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVHDDGR 93 (154)
T ss_dssp ---CCCEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEE-SCCHHHHHHHSCSSSCEEEEEECCEECTTSC
T ss_pred ccccceeeCHHHHHHHHHHHhcccCCccEEEEEEcCCCCEEEEEEcCC-CCCHHHHHHhCCCCCcEEEEEEeeeccCCCc
Confidence 34689999999999999999875 58999999999889999987654 5789999999999999999999999999998
Q ss_pred ceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 85 QKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 85 ~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
+++|++||+|||++|++|.||+|||+|++|++.| |++++|||+|++||+++.|.++|
T Consensus 94 ~~~klvFI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~e~i~~kl 150 (154)
T 1vkk_A 94 VSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTA-ELTKVFEIRTTDDLTETWLKEKL 150 (154)
T ss_dssp EECCEEEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCCCEEEESSGGGCCHHHHHHHH
T ss_pred ccccEEEEEECCCCCChhhhhhhHhhHHHHHHhh-CceEEEEECChHhCCHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999999999999999987
No 11
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=5e-42 Score=242.56 Aligned_cols=131 Identities=27% Similarity=0.507 Sum_probs=115.1
Q ss_pred cc-ccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCC----CHHHHhhcC-CCCCceEEEEeeeeec
Q 032313 7 NA-SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAE----SYDDFTASL-PDNDCRYAVYDFDFVT 80 (143)
Q Consensus 7 ~~-~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~----~~~e~~~~L-~~~~pry~~~~~~~~~ 80 (143)
|| +|||.++++|+++|++++.++ +|||+|+|++ ++|+++++|+.+. +|++|++.| |+++|||++||+++.+
T Consensus 1 Msm~SGi~v~~e~~~~f~~~k~~k-~~~ii~~i~~--~~ivv~~~~~~~~~~~~~~~e~~~~l~~~~~~rY~~~~~~~~~ 77 (142)
T 1m4j_A 1 MSHQTGIQASEDVKEIFARARNGK-YRLLKISIEN--EQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQN 77 (142)
T ss_dssp ------CCBCHHHHHHHHHHHTTT-CSEEEEEECS--SSEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEE
T ss_pred CCCcCCCeECHHHHHHHHHHhcCC-eEEEEEEEcC--CEEEEEeecCCCccccccHHHHHHhhCCCCCceEEEEEcCcCC
Confidence 44 899999999999999999988 9999999976 4888888776553 478999988 6999999999999887
Q ss_pred CCCCceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeE--EEEeCCcCCCCHHHHHhhhC
Q 032313 81 SENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHY--EIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 81 ~~~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~--~i~a~d~~dl~~~~i~~~~~ 143 (143)
.+ ++||+||+|||++||+|.||+|||+|++|++.|+|+++ ++||+|++||+++.|.++++
T Consensus 78 ~~---~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~i~~~l~ 139 (142)
T 1m4j_A 78 AQ---GYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLL 139 (142)
T ss_dssp TT---EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHHHHC
T ss_pred CC---CceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCceeEEEEEeCChHHCCHHHHHHHHh
Confidence 64 58999999999999999999999999999999999887 99999999999999999874
No 12
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=5.4e-41 Score=239.57 Aligned_cols=132 Identities=20% Similarity=0.339 Sum_probs=123.1
Q ss_pred ccCcccCHhHHHHHHHHhcCC--ceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCce
Q 032313 9 SSGMGVADHSKSTYLELQRKK--VHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK 86 (143)
Q Consensus 9 ~sGi~i~~e~~~~~~~lk~~~--~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 86 (143)
...+.++++|+++|++|+.++ .++||+|+|+.++++|+|++++. +.+|++|.+.||+++|||++||+++++.+|+.+
T Consensus 11 ~~~~~v~~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~-~~~~~el~~~Lp~~~prY~~~~~~~~~~~~~~~ 89 (151)
T 1v6f_A 11 LVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELE-GVSPDELKDELPERQPRFIVYSYKYQHDDGRVS 89 (151)
T ss_dssp CCCCEECHHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEE-SCCHHHHGGGSCSSSCEEEEEECCEECTTSCEE
T ss_pred ceEEEECHHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCC-CCCHHHHHhhCCCCCceEEEEecccccCCCccc
Confidence 345789999999999999976 48999999999888999988654 568999999999999999999999999998899
Q ss_pred ecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 87 SKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 87 ~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
+|++||+|||++|++|.||+|||+|++|++.| |++++|||+|++||+++.|.++|
T Consensus 90 ~k~vfI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~~~i~~kl 144 (151)
T 1v6f_A 90 YPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTA-ELTKVFEIRNTEDLTEEWLREKL 144 (151)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCSEEEEESSGGGCCHHHHHHHH
T ss_pred ccEEEEEECCCCCChHHheehHHHHHHHHHHh-CCeEEEEECChHHCCHHHHHHHH
Confidence 99999999999999999999999999999999 89999999999999999999987
No 13
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=100.00 E-value=2.6e-42 Score=251.55 Aligned_cols=136 Identities=34% Similarity=0.710 Sum_probs=123.9
Q ss_pred ccccCcccCHhHHHHHHHHhcCC---------ceeEEEEEEeCCCcEEEEeeC--------CCC-CCCHHHHhhcCCCCC
Q 032313 7 NASSGMGVADHSKSTYLELQRKK---------VHRYVIFKIDEKKKEVVVEKT--------GGP-AESYDDFTASLPDND 68 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~---------~~~~iif~i~~~~~~i~v~~~--------~~~-~~~~~e~~~~L~~~~ 68 (143)
+++|||.++++|+++|++++.++ .+|||+|+|++++++|++++. |.+ ..+|++|++.||+++
T Consensus 9 ~m~SGi~vs~e~~~~f~~~k~~ks~~~~~~~~~~~~iifki~~~~~~Iivee~~~~~~~~~g~~~~~~~~ef~~~L~~~~ 88 (174)
T 1ak6_A 9 NSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKD 88 (174)
T ss_dssp TTTTCCCCCSHHHHHHHHTSSSCCSSHHHHGGGCCCEECCCSTTSCSCCCCSSCCCCSSSTTTTCCSSSHHHHHTSCSSC
T ss_pred cccCCCccCHHHHHHHHHHHcCCcccccccccceeEEEEEECCCCcEEEEeccccccccccCcccCCCHHHHHHhCCCCC
Confidence 34899999999999999999984 588999999988788888763 222 568999999999999
Q ss_pred ceEEEEeeeeecCCCCceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhhC
Q 032313 69 CRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 69 pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
|||++||+++.+.+| +++||+||+|||++|++|.||+|||+|++|++.|+|++++|||+|++||+++.|.++|.
T Consensus 89 prY~ly~~~~~~~~~-~~~klvfI~W~Pd~a~vk~KMlYAssk~~lk~~l~gi~~~i~atd~~El~~e~i~~kl~ 162 (174)
T 1ak6_A 89 CRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLG 162 (174)
T ss_dssp CCCEECCCCCCCSSC-SCCCCCEEEECCSSSCHHHHHSHHHHHHHHHHHCTTCSCCEEESSTTTTCHHHHHHHTT
T ss_pred cEEEEEeCcccCCCC-ccccEEEEEECCCCCCHHHhhHHHHHHHHHHHHhcCCeEEEEECChhhcCHHHHHHHhc
Confidence 999999999877776 89999999999999999999999999999999999999999999999999999999874
No 14
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=232.74 Aligned_cols=127 Identities=19% Similarity=0.403 Sum_probs=119.6
Q ss_pred cccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecEEE
Q 032313 12 MGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFF 91 (143)
Q Consensus 12 i~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vf 91 (143)
+.++++|+++|++|+.++ ++||+|+|+.++++|+|++++ +.+|++|.+.||+++|||++|||++++.+| .++|++|
T Consensus 2 ~~v~~e~~~a~~~lk~~~-~~~ii~~id~~~~~I~v~~~~--~~~~~el~~~Lp~~~~rY~~y~~~~~~~~~-~~~k~vf 77 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQKM-VNYIQMKLDLERETIELVHTE--PTDVAQLPSRVPRDAARYHFFLYKHTHEGD-PLESVVF 77 (135)
T ss_dssp CCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEECC--CCCGGGGGGGSCSSSCEEEEEEEEEEETTE-EEEEEEE
T ss_pred cccCHHHHHHHHHHHcCC-CcEEEEEEeCCCCEEEEEecC--CCCHHHHHhhCCCCCcEEEEEecccccCCC-CCccEEE
Confidence 678999999999999987 999999999988999999875 578999999999999999999999987765 8999999
Q ss_pred EEEcCC-CCCcchhhHhhhhHHHHHhhcC---Cee--EEEEeCCcCCCCHHHHHhhh
Q 032313 92 IAWSPD-VSRIRAKMLYATSKDRFRRELD---GIH--YEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 92 I~w~P~-~a~vk~KMlYas~k~~l~~~l~---gi~--~~i~a~d~~dl~~~~i~~~~ 142 (143)
|+|||+ +|++|.||+|||+|+.|++.|. |++ ++|||+|++||+++.|.++|
T Consensus 78 I~w~P~~~~~vk~kMlYassk~~l~~~l~~~~Gi~v~~~iea~d~~el~~~~i~~kl 134 (135)
T 2w0i_A 78 IYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDGAELTAEFLDDEV 134 (135)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCGGGCCHHHHHHHH
T ss_pred EEECCCCCCCHHHHhHhHHhHHHHHHHHhhccCCceeEEEEcCChhhcCHHHHHHhh
Confidence 999999 9999999999999999999998 876 89999999999999999987
No 15
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.7e-41 Score=234.40 Aligned_cols=126 Identities=25% Similarity=0.453 Sum_probs=115.0
Q ss_pred ccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCC----CHHHHhhcC-CCCCceEEEEeeeeecCCC
Q 032313 9 SSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAE----SYDDFTASL-PDNDCRYAVYDFDFVTSEN 83 (143)
Q Consensus 9 ~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~----~~~e~~~~L-~~~~pry~~~~~~~~~~~~ 83 (143)
+|||.++++|+++|++++.++ +|||+|+|++ ++|+++++++.+. +|++|++.| |+++|||++||+++.+.+
T Consensus 1 ~SGi~v~~e~~~~f~~~k~~k-~r~ii~~i~~--~~ivv~~~~~~~~~~~~~~~~~~~~l~~~~~prY~v~~~~~~~~~- 76 (134)
T 2vac_A 1 SMGIHATEELKEFFAKARAGS-VRLIKVVIED--EQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLYRLDSQNAQ- 76 (134)
T ss_dssp CCSCEECHHHHHHHHHHHHSS-CSEEEEEEET--TEEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEETT-
T ss_pred CCCcEeCHHHHHHHHHHhcCC-eEEEEEEecC--CEEEEEeecCcCcccccCHHHHHHhcCCCCCCEEEEEECCcCCCC-
Confidence 589999999999999999998 9999999987 4899988776553 478999998 689999999999988765
Q ss_pred CceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeE--EEEeCCcCCCCHHHHHh
Q 032313 84 CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHY--EIQATDPSEMDLEVIRD 140 (143)
Q Consensus 84 ~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~--~i~a~d~~dl~~~~i~~ 140 (143)
++||+||+|||++||+|.||+|||+|++|++.|+|+++ ++||+|++||+++.+++
T Consensus 77 --~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~~~~ 133 (134)
T 2vac_A 77 --GFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFAGYQK 133 (134)
T ss_dssp --EEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHH
T ss_pred --CceEEEEEEcCCCCCHHHHhHHHHHHHHHHHHcCCCeeeEEEEeCChHHcCHHHHhc
Confidence 48999999999999999999999999999999999887 99999999999999875
No 16
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=100.00 E-value=3.5e-40 Score=238.70 Aligned_cols=131 Identities=19% Similarity=0.392 Sum_probs=123.3
Q ss_pred cccCcc--cCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCc
Q 032313 8 ASSGMG--VADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQ 85 (143)
Q Consensus 8 ~~sGi~--i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~ 85 (143)
++|||. ++++|+++|++|+.+ .++||+|+|+.++++|+|++++ ..+|++|.+.||+++|||++|||.+++.++ .
T Consensus 21 ~~sgv~~~v~~e~~~a~~~lk~~-~~~~vifkId~~~~~I~v~~~~--~~~~~el~~~Lp~~~pRY~~y~~~~~~~~~-~ 96 (166)
T 2d8b_A 21 TLQGVAFPISRDAFQALEKLSKK-QLNYVQLEIDIKNETIILANTE--NTELRDLPKRIPKDSARYHFFLYKHSHEGD-Y 96 (166)
T ss_dssp CSCCCCCCBCHHHHHHHHHHHTT-CCSCCEEEEETTTTEEEEEECC--CCCSTTHHHHSCSSCCEEEEEEEEEEETTE-E
T ss_pred ccCCcccCcCHHHHHHHHHHHcC-CCcEEEEEEeCCCCEEEEEecC--CCCHHHHHHhCCCCCceEEEEeccccCCCC-c
Confidence 359999 999999999999998 5999999999988999999876 578999999999999999999999988776 6
Q ss_pred eecEEEEEEcCC-CCCcchhhHhhhhHHHHHhhcC---Ce--eEEEEeCCcCCCCHHHHHhhh
Q 032313 86 KSKIFFIAWSPD-VSRIRAKMLYATSKDRFRRELD---GI--HYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 86 ~~k~vfI~w~P~-~a~vk~KMlYas~k~~l~~~l~---gi--~~~i~a~d~~dl~~~~i~~~~ 142 (143)
++|++||+|||+ +|++|.||+|||+|+.|++.|. |+ +++|||+|++||+++.|.++|
T Consensus 97 ~~k~vFI~w~P~~~~~ik~KMlYAssk~~l~~~l~~~~Gi~v~~~iea~d~~El~~~~i~~kl 159 (166)
T 2d8b_A 97 LESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEV 159 (166)
T ss_dssp EEEEEEEEECCCSSSCHHHHHHHHHTTHHHHHHHTTSSCCCCSEEEEESSSTTCCHHHHHHHH
T ss_pred cccEEEEEECCCCCCCHHHeeehhhhHHHHHHHHhhccCCceeEEEEeCChHHCCHHHHHHHh
Confidence 999999999999 9999999999999999999999 87 899999999999999999987
No 17
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=100.00 E-value=6.3e-40 Score=231.43 Aligned_cols=129 Identities=21% Similarity=0.391 Sum_probs=118.1
Q ss_pred ccccCcccC---HhHHHHHHHHhcCC--ceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecC
Q 032313 7 NASSGMGVA---DHSKSTYLELQRKK--VHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTS 81 (143)
Q Consensus 7 ~~~sGi~i~---~e~~~~~~~lk~~~--~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~ 81 (143)
|+|+||.++ ++|+++|++++.++ .++||+|+|++ +++|+|+.+|. +|++|.+.||+++|||++||+. .
T Consensus 1 ~~m~~i~l~~~~~e~~~a~~~~~~~~~~~~~~ii~~i~~-~~~i~v~~~g~---~~~el~~~l~~~~~rY~~~~~~---~ 73 (141)
T 1hqz_1 1 MALEPIDYTTHSREIDAEYLKIVRGSDPDTTWLIISPNA-KKEYEPESTGS---SFHDFLQLFDETKVQYGLARVS---P 73 (141)
T ss_dssp --CCCCCCSTTHHHHHHHHHHHHHTCCTTCCEEEEEECT-TSCEEEEEEES---CHHHHHTCCCTTSCEEEEEEEC---C
T ss_pred CcccccccCCCCHHHHHHHHHHHhCCCCCceEEEEEEcC-CCEEEEEeecC---CHHHHHhhCCCCceEEEEEEEe---c
Confidence 788999985 99999999999985 69999999998 57899988764 8999999999999999999997 4
Q ss_pred CCCceecEEEEEEcCCCCCcchhhHhhhhHHHHHh-hcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 82 ENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRR-ELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 82 ~~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~-~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
+|+.++|+|||+|||++||+|.||+|||+|++|++ .|+|++++|++++++||+++.|.+++
T Consensus 74 ~~~~~~k~vfI~w~Pd~~~vk~Kmlyas~k~~l~~~~l~g~~~~i~a~~~~el~~e~i~~kl 135 (141)
T 1hqz_1 74 PGSDVEKIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDLDENELLMKI 135 (141)
T ss_dssp TTCSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHHTSCSCSEEEEESSGGGGCHHHHHHHH
T ss_pred CCCceeeEEEEEECCCCCChhheEEEeccHHHHHHHhCCceEEEEEECChHHCCHHHHHHHH
Confidence 56789999999999999999999999999999997 99999999999999999999999986
No 18
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=100.00 E-value=2.3e-38 Score=228.64 Aligned_cols=131 Identities=19% Similarity=0.384 Sum_probs=120.3
Q ss_pred ccCc--ccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCce
Q 032313 9 SSGM--GVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQK 86 (143)
Q Consensus 9 ~sGi--~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~ 86 (143)
.+|| .|+++|+++|++|+.++ ++||+|+|+.++++|+|++. .+.+|++|.+.||+++|||++|+|+++++ |+..
T Consensus 17 ~~gv~~~v~~e~~~a~~~lk~~~-~~~iifkId~~~e~I~v~~~--~~~~~~df~~~Lp~~~pRY~vyd~~~~~~-g~~~ 92 (164)
T 3daw_B 17 LQGVAFPISRDAFQALEKLSKKQ-LNYVQLEIDIKNETIILANT--ENTELRDLPKRIPKDSARYHFFLYKHSHE-GDYL 92 (164)
T ss_dssp -CCCCCCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEEC--CCCCGGGSGGGSCSSSCEEEEEEEEEEET-TEEE
T ss_pred cCcceEEECHHHHHHHHHHHcCC-ceEEEEEEeCCCCEEEEEeC--CCCCHHHHHHhCCccCceEEEEecccccC-CCcc
Confidence 5677 79999999999999985 89999999998899999887 35899999999999999999999999776 6667
Q ss_pred ecEEEEEEcCC-CCCcchhhHhhhhHHHHHhhcC---Ce--eEEEEeCCcCCCCHHHHHhhhC
Q 032313 87 SKIFFIAWSPD-VSRIRAKMLYATSKDRFRRELD---GI--HYEIQATDPSEMDLEVIRDRAR 143 (143)
Q Consensus 87 ~k~vfI~w~P~-~a~vk~KMlYas~k~~l~~~l~---gi--~~~i~a~d~~dl~~~~i~~~~~ 143 (143)
.++|||+|||+ +|++|.||+|||+|+.|++.|. |+ .++||++|++||+++.|.++|.
T Consensus 93 ~~~ifi~~~P~~~a~ik~kMlYASsK~~l~~~l~~~~Gi~i~k~iea~d~~Elt~e~l~ekl~ 155 (164)
T 3daw_B 93 ESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 155 (164)
T ss_dssp EEEEEEEECCSTTSCHHHHHHHHHTHHHHHHHHHHHHCCCEEEEEEESSSSSCCHHHHHHHHS
T ss_pred ccEEEEEEcCCCCCCHHHHHHHHHhHHHHHHHHhhccCCceeEEEEeCChHHcCHHHHHhHhC
Confidence 88999999999 9999999999999999999998 87 8899999999999999999873
No 19
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=225.44 Aligned_cols=133 Identities=20% Similarity=0.340 Sum_probs=121.7
Q ss_pred CcccccCcccC-----HhHHHHHHHHhcCCc-eeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeee
Q 032313 5 GTNASSGMGVA-----DHSKSTYLELQRKKV-HRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDF 78 (143)
Q Consensus 5 ~~~~~sGi~i~-----~e~~~~~~~lk~~~~-~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~ 78 (143)
|+.++||+.++ ++|+++|++++.++. +||++|+|+++.++|+|+.+|+ .+|+||.+.|++++|||++||+..
T Consensus 1 ~~~~~~~m~~~l~~~~~e~~~a~~~v~~~~~~~~wi~~~i~~~~~~l~v~~~G~--~~~~e~~~~L~~~~~~Y~~~r~~~ 78 (146)
T 1x67_A 1 GSSGSSGMAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGE--GGLEEMVEELNSGKVMYAFCRVKD 78 (146)
T ss_dssp CCSSSSSSCCCCCTTHHHHHHHHHHHHCSSSSCSEEEEEESSSSSCEEEEEEES--SCHHHHHHHCCTTSEEEEEEEEEC
T ss_pred CCCcccceEEEcCCCCHHHHHHHHHHHcCCCCccEEEEEEeCCCcEEEEEeccC--CCHHHHHhhCCCCceEEEEEEEEc
Confidence 34567887777 999999999999874 9999999998767899998874 589999999999999999999973
Q ss_pred ecCCCCceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 79 VTSENCQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 79 ~~~~~~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
++++++|+|||.||||++|++.||+||+++++|++.|+|+|++|+|++++||+++.|.+++
T Consensus 79 ---~~~~~~K~vfI~W~pd~a~v~~Km~yas~k~~lk~~l~g~~~ei~at~~~el~~~~i~~k~ 139 (146)
T 1x67_A 79 ---PNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKV 139 (146)
T ss_dssp ---SSSCSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTTEEEEECCCSGGGGCHHHHHHHH
T ss_pred ---CCCCeeeEEEEEECCCCCChhheeeehhhHHHHHHhcCCcEEEEEeCChHHCCHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999986
No 20
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=100.00 E-value=6.3e-40 Score=227.13 Aligned_cols=117 Identities=24% Similarity=0.509 Sum_probs=106.7
Q ss_pred ccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCC---ceEEEEeeeeecCCC
Q 032313 7 NASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDND---CRYAVYDFDFVTSEN 83 (143)
Q Consensus 7 ~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~---pry~~~~~~~~~~~~ 83 (143)
+|+|||.+++||+++|++|+.++++|||+|+|++ ++|+|+++++ ..+|++|.+.||+++ |||++||+
T Consensus 2 ~m~SGi~vs~e~~~~f~~lk~~k~~~~ii~kI~~--~~ivv~~~~~-~~~~~~f~~~Lp~~~~~~prY~vy~~------- 71 (124)
T 3q2b_A 2 SMISGIRVNDNCVTEFNNMKIRKTCGWIIFVIQN--CEIIIHSKGA-STTLTELVQSIDKNNEIQCAYVVFDA------- 71 (124)
T ss_dssp --CCSCEECHHHHHHHHHHHHHTSSEEEEEEEET--TEEEEEEEEE-CSCHHHHHHHHHHCTTCSEEEEEEEC-------
T ss_pred CCCCCCccCHHHHHHHHHHhcCCCcEEEEEEEcC--CEEEEeccCC-CCCHHHHHHHccccCCCCcEEEEEec-------
Confidence 3679999999999999999998789999999997 5898888765 478999999999999 99999997
Q ss_pred CceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCee-EEEEeCCcCCCCH
Q 032313 84 CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIH-YEIQATDPSEMDL 135 (143)
Q Consensus 84 ~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~-~~i~a~d~~dl~~ 135 (143)
++|++||+|||++|++|+||+|||+|++|++.|+|++ .+++|+|++||++
T Consensus 72 --~~k~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~g~~~~~i~a~d~~dlt~ 122 (124)
T 3q2b_A 72 --VSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIESAQDVAD 122 (124)
T ss_dssp --SSCEEEEEEECTTSCHHHHHHHHHHHHHHHTTSTTSEECCSCBCSHHHHTT
T ss_pred --CCCEEEEEECCCCCChhHhhhhHHHHHHHHHHhCCCceEEEEecCHHHccc
Confidence 4699999999999999999999999999999999998 4899999999874
No 21
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=100.00 E-value=1.5e-38 Score=224.07 Aligned_cols=116 Identities=37% Similarity=0.737 Sum_probs=107.2
Q ss_pred cccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCcee
Q 032313 8 ASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKS 87 (143)
Q Consensus 8 ~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~ 87 (143)
++|||.++++|+++|++|+.++.+|||+|+|+. ++|+++++++ + +|++|.+.||+++|||++|| +| +
T Consensus 22 m~sGi~vs~e~~~af~~lk~~k~~~~ii~~I~~--~eivv~~~g~-~-~~~el~~~Lp~~~prY~~y~------dg---~ 88 (139)
T 2l72_A 22 MASGMGVDENCVARFNELKIRKTVKWIVFKIEN--TKIVVEKDGK-G-NADEFRGALPANDCRFGVYD------CG---N 88 (139)
T ss_dssp CCTTCEECHHHHHHHHHHTTTTCCCEEEEEEET--TEEEEEEEES-S-HHHHHHHHCCCCSCCEEEEE------CS---S
T ss_pred ccCCCCcCHHHHHHHHHHhCCCCeeEEEEEEcC--CEEEEeecCC-C-CHHHHHHhCCCCCcEEEEEc------CC---C
Confidence 489999999999999999998779999999998 6788888776 4 89999999999999999999 34 8
Q ss_pred cEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCeeEE-EEeCCcCCCCHH
Q 032313 88 KIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIHYE-IQATDPSEMDLE 136 (143)
Q Consensus 88 k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~-i~a~d~~dl~~~ 136 (143)
|++||+|||++||+|+||+|||+|++|++.|+|+++. +++++++||+++
T Consensus 89 k~vFI~w~Pd~a~vk~KMlYASsk~~lk~~l~g~~v~~iea~~~~DLte~ 138 (139)
T 2l72_A 89 KIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMGDLAPL 138 (139)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCSCCSCEEEESSTTTTSCC
T ss_pred cEEEEEECCCCCChhHeeehHhhHHHHHHHhCCceEEEEEeCCHHHCccC
Confidence 9999999999999999999999999999999998775 899999999875
No 22
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=100.00 E-value=6.5e-35 Score=205.96 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=113.4
Q ss_pred CHhHHHHHHHHhcCC-ceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecEEEEE
Q 032313 15 ADHSKSTYLELQRKK-VHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIA 93 (143)
Q Consensus 15 ~~e~~~~~~~lk~~~-~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~ 93 (143)
+|+|+++|++++.++ .++|++|+|++ ++|+|+.+|. +|+||.+.||+++|||++||+. .++++++++|+|||.
T Consensus 6 ~~~~~~a~~~v~~~~~~~~wilf~~~~--~~i~v~~~G~---g~~e~~~~L~~~~~~Ya~~r~~-~~~~~~~~~K~vfI~ 79 (141)
T 1t3y_A 6 KEACRAAYNLVRDDGSAVIWVTFKYDG--STIVPGEQGA---EYQHFIQQCTDDVRLFAFVRFT-TGDAMSKRSKFALIT 79 (141)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEEEEET--TEEEEEEEES---SHHHHHHHCCTTCEEEEEEEEE-ECSGGGCEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCceEEEEEEcC--CEEEEEecCC---CHHHHHhhCCCCceEEEEEEEE-ecCCCCceeeEEEEE
Confidence 589999999999987 49999999987 3599988875 4999999999999999999996 556778999999999
Q ss_pred EcCCCCCcchhhHhhhhHHHHHhhcCCeeEEEEeCCcCCCCHHHHHhhh
Q 032313 94 WSPDVSRIRAKMLYATSKDRFRRELDGIHYEIQATDPSEMDLEVIRDRA 142 (143)
Q Consensus 94 w~P~~a~vk~KMlYas~k~~l~~~l~gi~~~i~a~d~~dl~~~~i~~~~ 142 (143)
|||+++|++.||+||+++++|++.|+|+|++|+|+|++||+++.|.+++
T Consensus 80 W~pd~~~~~~K~~~as~k~~vk~~l~g~~~~i~a~d~~el~~~~I~~kv 128 (141)
T 1t3y_A 80 WIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSEL 128 (141)
T ss_dssp EECTTSCHHHHHHHHHHHHHHTTTSCCCSEEEEECSGGGGSHHHHHHHH
T ss_pred ECCCCCCHHHhhhHHHHHHHHHHHhcccEEEEEeCChHHCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986
No 23
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=85.25 E-value=7.2 Score=26.85 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=55.5
Q ss_pred CCcccccCcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCC
Q 032313 4 RGTNASSGMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSEN 83 (143)
Q Consensus 4 ~~~~~~sGi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~ 83 (143)
||+|+.|=-.+++ +|+.... ....-|.+|++. +.+.+.+. ....|-+.+ ||++.. .+....
T Consensus 16 ~~~~~~~~~~~~~----~f~~~g~--~~gl~VWrIe~~-~~v~vp~~---------~~G~FysgD-~YIVl~-ty~~~~- 76 (150)
T 2ff3_A 16 RGSHGGSMVVEHP----EFLKAGK--EPGLQIWRVEKF-DLVPVPTN---------LYGDFFTGD-AYVILK-TVQLRN- 76 (150)
T ss_dssp ----------CCH----HHHHTTS--SSEEEEEEEETT-EEEECCGG---------GTTEEETTS-EEEEEE-EEECTT-
T ss_pred CCCccccccccCh----hhhccCC--CCCeEEEEEeCC-EEEECChH---------HcCeecCCC-eEEEEE-EEecCC-
Confidence 7888877444443 5666543 345778888863 33333221 123455555 476643 222222
Q ss_pred CceecEEEEEEcCCCCCcchhhHhhhhHHHHHhhcCCee
Q 032313 84 CQKSKIFFIAWSPDVSRIRAKMLYATSKDRFRRELDGIH 122 (143)
Q Consensus 84 ~~~~k~vfI~w~P~~a~vk~KMlYas~k~~l~~~l~gi~ 122 (143)
.+...++-+|++..++..++..-|.-...|-+.|+|..
T Consensus 77 -g~~~~~IyfW~G~~ss~de~gaAA~~aveLd~~lgg~~ 114 (150)
T 2ff3_A 77 -GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRA 114 (150)
T ss_dssp -SSEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred -CceEEEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCCc
Confidence 24577899999999999999888887788888887643
No 24
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=63.97 E-value=29 Score=23.00 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=55.3
Q ss_pred HHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecEEEEEEcCCCC
Q 032313 20 STYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVS 99 (143)
Q Consensus 20 ~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a 99 (143)
.+|+.... ....-|.+|++. +.+.+... ....|-+.+ ||++.. .+....| +...++-+|++..+
T Consensus 9 ~~~~~~g~--~~gl~vWrIe~~-~~~~vp~~---------~~G~Fy~gd-~YIvl~-ty~~~~g--~~~~~i~~W~G~~s 72 (128)
T 3cip_G 9 PEFLKAGK--EPGLQIWRVEKF-DLVPVPTN---------LYGDFFTGD-AYVILK-TVQLRNG--NLQYDLHYWLGNEC 72 (128)
T ss_dssp HHHHHTTS--SSEEEEEEEETT-EEEECCGG---------GTTEEETTC-EEEEEE-EEECTTS--CEEEEEEEEECTTC
T ss_pred hhHHhcCC--CCCeEEEEEeCC-EEEECChH---------HcCeecCCC-eEEEEE-EEecCCC--ceEEEEEEEcCCCC
Confidence 35666533 345778888863 33333221 123455555 476643 2322222 45778999999999
Q ss_pred CcchhhHhhhhHHHHHhhcCCee
Q 032313 100 RIRAKMLYATSKDRFRRELDGIH 122 (143)
Q Consensus 100 ~vk~KMlYas~k~~l~~~l~gi~ 122 (143)
+..++..-|.-...|-+.|+|-.
T Consensus 73 s~de~g~Aa~~aveLd~~lgg~~ 95 (128)
T 3cip_G 73 SQDESGAAAIFTVQLDDYLNGRA 95 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CcchHHHHHHHHHHHHHHcCCCc
Confidence 99999988888888889998743
No 25
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=62.69 E-value=33 Score=23.28 Aligned_cols=86 Identities=12% Similarity=0.141 Sum_probs=54.4
Q ss_pred HHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecEEEEEEcCCCC
Q 032313 20 STYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVS 99 (143)
Q Consensus 20 ~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a 99 (143)
.+|+.... ....-|.+|++. +.+.|... ....|-+.+ ||++.. .+.... .+...++-+|++..+
T Consensus 6 ~~f~~~g~--~~gl~VWrIe~~-~~~~vp~~---------~~G~Fy~gd-~YIvl~-ty~~~~--g~~~~~i~~W~G~~s 69 (147)
T 1t44_G 6 PEFLKAGK--EPGLQIWRVEKF-DLVPVPTN---------LYGDFFTGD-AYVILK-TVQLRN--GNLQYDLHYWLGNEC 69 (147)
T ss_dssp HHHHHTTS--SSEEEEEEEETT-EEEECCGG---------GTTEEETTC-EEEEEE-EEECTT--SCEEEEEEEEECTTC
T ss_pred hhhhccCC--CCCeEEEEEeCC-EEEECChH---------HcCeecCCC-eEEEEE-EEecCC--CceEEEEEEEeCCCC
Confidence 35665433 345778888863 33333221 123455555 476643 222222 255788999999999
Q ss_pred CcchhhHhhhhHHHHHhhcCCe
Q 032313 100 RIRAKMLYATSKDRFRRELDGI 121 (143)
Q Consensus 100 ~vk~KMlYas~k~~l~~~l~gi 121 (143)
+..++..-|.-...|.+.|+|.
T Consensus 70 s~de~g~Aa~~aveLd~~lgg~ 91 (147)
T 1t44_G 70 SQDESGAAAIFTVQLDDYLNGR 91 (147)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTC
T ss_pred ChhHHHHHHHHHHHHHHHcCCC
Confidence 9999998888888888888763
No 26
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=45.78 E-value=86 Score=23.80 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=53.8
Q ss_pred HHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecEEEEEEcCCCC
Q 032313 20 STYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVS 99 (143)
Q Consensus 20 ~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a 99 (143)
.+|+......+ .-|.+|++- .++.... +....+-+.+ ||+++.- +....| +..+.+-+|++..+
T Consensus 24 ~~~~~~g~~~G--l~iWrIe~~--~~~~v~~--------~~~G~Fy~gd-~Yivl~t-~~~~~g--~~~~~i~~W~G~~s 87 (297)
T 3tu5_B 24 PEFLKAGKEPG--LQIWRVEKF--DLVPVPT--------NLYGDFFTGD-AYVILKT-VQLRNG--NLQYDLHYWLGNEC 87 (297)
T ss_dssp HHHHHTTSSSE--EEEEEEETT--EEEECCG--------GGTTEEETTC-EEEEEEE-EECTTS--CEEEEEEEEECTTC
T ss_pred hhHhccCCCCc--eEEEEEcCC--EEEECCH--------HHcCeecCCC-eEEEeEe-EECCCC--ceeEEEEEEeCCCC
Confidence 56666544333 566778763 3332221 1233455555 5777643 222222 45677889999999
Q ss_pred CcchhhHhhhhHHHHHhhcCCe
Q 032313 100 RIRAKMLYATSKDRFRRELDGI 121 (143)
Q Consensus 100 ~vk~KMlYas~k~~l~~~l~gi 121 (143)
+.-++..-|.-...|-+.|+|-
T Consensus 88 s~de~g~aa~~av~Ld~~lgg~ 109 (297)
T 3tu5_B 88 SQDESGAAAIFTVQLDDYLNGR 109 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTC
T ss_pred ChhHHHHHHHHHHHHHHHcCCC
Confidence 9999988888888899999873
No 27
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=35.85 E-value=92 Score=20.40 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=51.1
Q ss_pred cCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecEEEEEEcCCCCCcchhhH
Q 032313 27 RKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAWSPDVSRIRAKML 106 (143)
Q Consensus 27 ~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMl 106 (143)
.......-|.+|++. +.+.+.+. ....|-+.+| |++.. .+. ..| +...++-+|++..++..++..
T Consensus 12 d~~~~~l~vWrIe~~-~~~~vp~~---------~~G~Fy~gd~-YIvl~-t~~-~~g--~~~~~i~~W~G~~ss~de~g~ 76 (126)
T 2vik_A 12 DKTTPGIQIWRIENM-EMVPVPTK---------SYGNFYEGDC-YVLLS-TRK-TGS--GFSYNIHYWLGKNSSQDEQGA 76 (126)
T ss_dssp CSSCCEEEEEECGGG-SCCEECTT---------TTTCCCSSSC-EEEEE-EEE-CSS--SEEEEEEEEECTTSCHHHHHH
T ss_pred CcCCCCEEEEEEeCC-EEEECChh---------hcCeeCCCCe-EEEEE-ecc-CCC--ceeEEEEEEeCCCCCchhHHH
Confidence 333455677777753 33333221 1234556564 77654 232 222 457789999999999999998
Q ss_pred hhhhHHHHHhhcCC
Q 032313 107 YATSKDRFRRELDG 120 (143)
Q Consensus 107 Yas~k~~l~~~l~g 120 (143)
-|.-...|-+.++|
T Consensus 77 Aa~~aveLd~~lgg 90 (126)
T 2vik_A 77 AAIYTTQMDEYLGS 90 (126)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC
Confidence 88888888888876
No 28
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=34.80 E-value=49 Score=21.77 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=21.9
Q ss_pred cccCHhHHHHHHHHhcCCceeEEEEEEe
Q 032313 12 MGVADHSKSTYLELQRKKVHRYVIFKID 39 (143)
Q Consensus 12 i~i~~e~~~~~~~lk~~~~~~~iif~i~ 39 (143)
|.+++.+.+.++++...... .+.++++
T Consensus 5 ItlT~~A~~~l~~~l~~~~~-~l~Lr~~ 31 (128)
T 2p2e_A 5 ITVTDDAAKKLQRYTDDSNA-VLLLDFD 31 (128)
T ss_dssp EEECHHHHHHHHHHHTCTTE-EEEEEEC
T ss_pred EEECHHHHHHHHHHHhcCCc-eEEEEEe
Confidence 89999999999998776533 5678887
No 29
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=26.80 E-value=1.2e+02 Score=19.11 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=37.4
Q ss_pred hHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCc
Q 032313 17 HSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDC 69 (143)
Q Consensus 17 e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~p 69 (143)
++..++.++..-.+.+..+..++.+++.+.+.=.|. +-+|+++.+.+..-.+
T Consensus 23 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~-~id~d~I~~~IE~~Gg 74 (97)
T 2raq_A 23 EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGN-DLDFDEITRAIESYGG 74 (97)
T ss_dssp HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECS-SCCHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEec-CCCHHHHHHHHHHcCC
Confidence 455566666555568889999999888887766664 6789988877655443
No 30
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=26.23 E-value=29 Score=28.18 Aligned_cols=35 Identities=6% Similarity=0.031 Sum_probs=26.9
Q ss_pred CCCHHHHhhcCCCCCceEEEEeeeeecCCCCceecEEEEEE
Q 032313 54 AESYDDFTASLPDNDCRYAVYDFDFVTSENCQKSKIFFIAW 94 (143)
Q Consensus 54 ~~~~~e~~~~L~~~~pry~~~~~~~~~~~~~~~~k~vfI~w 94 (143)
-.+|+||..-|..+-.||+++....+ ..++|||.-
T Consensus 191 I~~W~DLkrRL~pdRRCfaFFHp~mP------~EPLIfVeV 225 (460)
T 2ygw_A 191 VKNWMDMKRRVGPYRRCYFFSHCSTP------GEPLVVLHV 225 (460)
T ss_dssp CCSHHHHHHHTSTTEEEEEEEETTBT------TCCSEEEEE
T ss_pred cCCHHHHHHhcCCCCeEEEecCCCCC------CCCeEEEee
Confidence 46899999999888899999976542 347777654
No 31
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A
Probab=25.08 E-value=2.3e+02 Score=21.52 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCcEEEEeeCCCCCCCHHHHhhcCCCCCceEEE-EeeeeecCCCCceecEEEEEEcCCCCCcchhhHhhhh
Q 032313 32 RYVIFKIDEKKKEVVVEKTGGPAESYDDFTASLPDNDCRYAV-YDFDFVTSENCQKSKIFFIAWSPDVSRIRAKMLYATS 110 (143)
Q Consensus 32 ~~iif~i~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~pry~~-~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlYas~ 110 (143)
..-|++|++. +.+.+.. +....|-+.+| |++ |.+. . .| +....+-+|++..++..++..-|.-
T Consensus 8 ~~~vwrIe~~-~~~~v~~---------~~~G~Fy~gD~-YIvl~ty~--~-~~--~~~~~i~~W~G~~ss~de~~~aa~~ 71 (344)
T 2fh1_A 8 QKQIWRIEGS-NKVPVDP---------ATYGQFYGGDS-YIILYNYR--H-GG--RQGQIIYNWQGAQSTQDEVAASAIL 71 (344)
T ss_dssp EEEEEEEETT-EEEECCG---------GGTTEEETTSE-EEEEEEEE--E-TT--EEEEEEEEEECTTCCHHHHHHHHHH
T ss_pred CEEEEEEcCC-eEEECCH---------HHcCeecCCCe-EEEEEEee--c-CC--CceEEEEEEecCCCCHhHHHHHHHH
Confidence 4567788864 3333321 12345666665 666 4443 2 22 3577889999999999998777766
Q ss_pred HHHHHhhcCCe
Q 032313 111 KDRFRRELDGI 121 (143)
Q Consensus 111 k~~l~~~l~gi 121 (143)
...|.+.++|-
T Consensus 72 ~~~ld~~lgg~ 82 (344)
T 2fh1_A 72 TAQLDEELGGT 82 (344)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHhCCC
Confidence 67778888763
No 32
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=24.34 E-value=1.9e+02 Score=20.42 Aligned_cols=40 Identities=5% Similarity=-0.034 Sum_probs=30.7
Q ss_pred CcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeC
Q 032313 11 GMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKT 50 (143)
Q Consensus 11 Gi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~ 50 (143)
|-.+++++.+.|+++-.++....-++.++.+.-.|.|.+.
T Consensus 140 ~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~V~L~d~ 179 (226)
T 4b9x_A 140 NKHWTKEATARFQACVVGLKLQARVVEITANGVGVELTDL 179 (226)
T ss_dssp SSSCCHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHCCCeEEEEEEEEeCCeEEEEEEEC
Confidence 4468999999999998887777777777776555666553
No 33
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth disease, enterovirus uncoating, P factor, adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71} PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Probab=23.34 E-value=1.1e+02 Score=23.33 Aligned_cols=16 Identities=6% Similarity=0.115 Sum_probs=12.7
Q ss_pred cEEEEEEcCCCCCcch
Q 032313 88 KIFFIAWSPDVSRIRA 103 (143)
Q Consensus 88 k~vfI~w~P~~a~vk~ 103 (143)
-.+-|+|+|.+||+..
T Consensus 149 ~~~QvmyvPpGaP~p~ 164 (297)
T 3vbh_A 149 QLLQYMFVPPGAPKPD 164 (297)
T ss_dssp CEEEEEEECTTSCCCC
T ss_pred eEEEEEEcCCCCCCCC
Confidence 3456999999999764
No 34
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.08 E-value=47 Score=19.82 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=12.9
Q ss_pred EEeCCcCCCCHHHHHh
Q 032313 125 IQATDPSEMDLEVIRD 140 (143)
Q Consensus 125 i~a~d~~dl~~~~i~~ 140 (143)
|.-+||++|+++++..
T Consensus 42 I~ktdP~~LT~eEi~~ 57 (71)
T 2eo2_A 42 IHKTDPSTLTEEEVRK 57 (71)
T ss_dssp CCCCSTTTCCHHHHHH
T ss_pred CCCCCcccCCHHHHhh
Confidence 3457999999999865
No 35
>1ncq_A Coat protein VP1; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_1* 1hrv_1* 1hri_1* 1na1_A* 1k5m_A* 1r08_1* 1r09_1* 1rvf_1 1vrh_1* 2hwb_1* 2hwc_1* 2r04_1* 2r06_1* 2r07_1* 2rm2_1* 2rr1_1* 2rs1_1* 2rs3_1* 2rs5_1* 4rhv_1 ...
Probab=21.84 E-value=1.2e+02 Score=22.87 Aligned_cols=15 Identities=7% Similarity=0.045 Sum_probs=12.3
Q ss_pred EEEEEEcCCCCCcch
Q 032313 89 IFFIAWSPDVSRIRA 103 (143)
Q Consensus 89 ~vfI~w~P~~a~vk~ 103 (143)
.+-|+|+|.+||+..
T Consensus 147 ~~qvmyvPpGaP~p~ 161 (289)
T 1ncq_A 147 VVQAMYVPPGAPNPK 161 (289)
T ss_dssp EEEEEEECTTSCCCC
T ss_pred EEEEEEeCCCCCCCc
Confidence 456999999999774
No 36
>4a8x_B HOOK-like, isoform A; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Drosophila melanogaster}
Probab=20.97 E-value=24 Score=18.72 Aligned_cols=8 Identities=38% Similarity=0.696 Sum_probs=5.8
Q ss_pred EEEEcCCC
Q 032313 91 FIAWSPDV 98 (143)
Q Consensus 91 fI~w~P~~ 98 (143)
-|||+|-+
T Consensus 22 ~IY~LPlt 29 (40)
T 4a8x_B 22 CIYWLPLT 29 (40)
T ss_dssp CCEEECCC
T ss_pred ceEEeECC
Confidence 47888864
No 37
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=20.18 E-value=2.2e+02 Score=19.62 Aligned_cols=40 Identities=5% Similarity=-0.034 Sum_probs=29.9
Q ss_pred CcccCHhHHHHHHHHhcCCceeEEEEEEeCCCcEEEEeeC
Q 032313 11 GMGVADHSKSTYLELQRKKVHRYVIFKIDEKKKEVVVEKT 50 (143)
Q Consensus 11 Gi~i~~e~~~~~~~lk~~~~~~~iif~i~~~~~~i~v~~~ 50 (143)
+-.+++++.+.|+++-.++.....++.+..+.-.|.+.+.
T Consensus 140 ~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~V~L~d~ 179 (201)
T 4b9w_A 140 NKHWTKEATARFQACVVGLKLQARVVEITANGVGVELTDL 179 (201)
T ss_dssp SSSCCHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEEEEeCCEEEEEEEEC
Confidence 4468999999999998887777777777776555556543
Done!