BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032315
(143 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224056563|ref|XP_002298912.1| predicted protein [Populus trichocarpa]
gi|222846170|gb|EEE83717.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/126 (79%), Positives = 108/126 (85%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VAITG E+IGKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME QTGD+P+YTTSDGSVKIQKD E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQTGDMPNYTTSDGSVKIQKDSEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|255558950|ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223540340|gb|EEF41911.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 108/126 (85%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VAITG ES+GKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAITGIESVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQKD E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|297796859|ref|XP_002866314.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
gi|297312149|gb|EFH42573.1| DNA-directed RNA polymerase II [Arabidopsis lyrata subsp. lyrata]
Length = 176
Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 108/126 (85%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VAITG ESIGKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAITGIESIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+VNKMGF AEAG VQIF LIPDDME Q GD+P+YTTSDGSVKIQK+CE+ LKIIGT+
Sbjct: 91 LVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|449466050|ref|XP_004150740.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449518487|ref|XP_004166273.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 176
Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 108/126 (85%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VAITG E+IGKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQKD E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|357476433|ref|XP_003608502.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|217071674|gb|ACJ84197.1| unknown [Medicago truncatula]
gi|355509557|gb|AES90699.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|388514911|gb|AFK45517.1| unknown [Medicago truncatula]
Length = 176
Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 108/126 (85%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VA+TG E+IGKG+IR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAVTGIENIGKGIIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME QTGD+P+YTTSDGSVKIQKD E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQTGDMPNYTTSDGSVKIQKDSEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|351722267|ref|NP_001236982.1| DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
gi|356512183|ref|XP_003524800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Glycine max]
gi|1173137|sp|P46279.1|RPB7_SOYBN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|170052|gb|AAA34005.1| RNA polymerase II [Glycine max]
gi|255626843|gb|ACU13766.1| unknown [Glycine max]
Length = 176
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 108/126 (85%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VA+TG E+IGKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQKD E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|388502464|gb|AFK39298.1| unknown [Lotus japonicus]
Length = 176
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 108/126 (85%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VA+TG E++GKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAVTGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQKD E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|225434800|ref|XP_002282298.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147841138|emb|CAN75204.1| hypothetical protein VITISV_042914 [Vitis vinifera]
gi|297745997|emb|CBI16053.3| unnamed protein product [Vitis vinifera]
Length = 176
Score = 195 bits (495), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 108/126 (85%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTCSGRHGF VAITG E++GKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 VKDVEGTCSGRHGFVVAITGIENVGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQKD E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|357133761|ref|XP_003568492.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 177
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 106/126 (84%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VAITG E IGKGLIR GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAITGVEDIGKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQK+ E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|326497319|dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326505504|dbj|BAJ95423.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 177
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 106/126 (84%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VAITG E IGKGLIR GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAITGVEDIGKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQK+ E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|115463767|ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|50878367|gb|AAT85142.1| putative RNA polymerase II subunit 5 [Oryza sativa Japonica Group]
gi|113579034|dbj|BAF17397.1| Os05g0400700 [Oryza sativa Japonica Group]
gi|125552268|gb|EAY97977.1| hypothetical protein OsI_19896 [Oryza sativa Indica Group]
gi|215704281|dbj|BAG93121.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196761|gb|EEC79188.1| hypothetical protein OsI_19893 [Oryza sativa Indica Group]
gi|222631528|gb|EEE63660.1| hypothetical protein OsJ_18478 [Oryza sativa Japonica Group]
Length = 177
Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 106/126 (84%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTCSGRHGF VAITG E +GKGLIR GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 IKDVEGTCSGRHGFVVAITGVEDVGKGLIREGTGYVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQKD E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|15237831|ref|NP_200726.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
gi|585917|sp|P38421.1|RPB7_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|166854|gb|AAA32861.1| RNA polymerase II [Arabidopsis thaliana]
gi|9759239|dbj|BAB09763.1| DNA-directed RNA polymerase II 19 kD polypeptide (RNA polymerase II
subunit 5) [Arabidopsis thaliana]
gi|26452908|dbj|BAC43532.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|28973525|gb|AAO64087.1| putative RNA polymerase II [Arabidopsis thaliana]
gi|332009771|gb|AED97154.1| DNA-directed RNA polymerase II subunit RPB7 [Arabidopsis thaliana]
Length = 176
Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/126 (76%), Positives = 107/126 (84%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VAITG ++IGKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+VNKMGF AEAG VQIF LIPDDME Q GD+P+YTTSDGSVKIQK+CE+ LKIIGT+
Sbjct: 91 LVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD T I
Sbjct: 151 VDATAI 156
>gi|326496519|dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 106/126 (84%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VAITG E IGKGLIR GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 90 MKDVEGTCSGRHGFVVAITGVEDIGKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVT 149
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQK+ E+ LKIIGT+
Sbjct: 150 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTR 209
Query: 118 VDVTEI 123
VD TEI
Sbjct: 210 VDATEI 215
>gi|226500588|ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|242056199|ref|XP_002457245.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|242090461|ref|XP_002441063.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|194708012|gb|ACF88090.1| unknown [Zea mays]
gi|195628342|gb|ACG36001.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|241929220|gb|EES02365.1| hypothetical protein SORBIDRAFT_03g003990 [Sorghum bicolor]
gi|241946348|gb|EES19493.1| hypothetical protein SORBIDRAFT_09g019690 [Sorghum bicolor]
gi|413945277|gb|AFW77926.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 177
Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 97/126 (76%), Positives = 106/126 (84%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTCSGRHGF VAITG E IGKGLIR GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 IKDVEGTCSGRHGFVVAITGVEDIGKGLIREGTGYVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQK+ E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|168056096|ref|XP_001780058.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668556|gb|EDQ55161.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 177
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 103/126 (81%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
++DVEGTCSGRHGF VA+T E+IG GLIR+GT VTF V+ QC+VFRPFKGEIL + VT
Sbjct: 31 IQDVEGTCSGRHGFVVAVTAVETIGSGLIRDGTGFVTFPVKYQCVVFRPFKGEILESVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDM Q+ D+P+Y TSDGSV+IQKD E+ LKI+GT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMAFQSDDVPNYKTSDGSVRIQKDSEVRLKIVGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|302754896|ref|XP_002960872.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
gi|302767440|ref|XP_002967140.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300165131|gb|EFJ31739.1| hypothetical protein SELMODRAFT_87027 [Selaginella moellendorffii]
gi|300171811|gb|EFJ38411.1| hypothetical protein SELMODRAFT_75793 [Selaginella moellendorffii]
Length = 177
Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 101/126 (80%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEGTCSGRHGF VA+TG ++IGKGLIR+GT VTF + QC+VFRPFKGEIL VT
Sbjct: 31 IHDVEGTCSGRHGFVVAVTGVDTIGKGLIRDGTGYVTFPIHYQCVVFRPFKGEILEGVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+VNKMGF AEAG VQIF LIPDDM Q+GD+P Y TSD SV+IQKD E+ LKI+GT+
Sbjct: 91 LVNKMGFFAEAGPVQIFVSNHLIPDDMSFQSGDVPCYETSDSSVRIQKDSEVRLKIVGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>gi|111140005|gb|ABH06364.1| RNA polymerase II [Sorbus aucuparia]
Length = 110
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 70/84 (83%), Gaps = 3/84 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSG+HGF VAITG E+IGKG+IR+GT V+F ++ QC+VFRPFKGEIL A VT
Sbjct: 27 MKDVEGTCSGQHGFVVAITGIENIGKGMIRDGTGFVSFPMKYQCVVFRPFKGEILEAVVT 86
Query: 61 MVNKMGFLAEAGAVQIFC---LIP 81
MVNKMGF AEAG VQIF LIP
Sbjct: 87 MVNKMGFFAEAGPVQIFVSNHLIP 110
>gi|384247619|gb|EIE21105.1| RNA polymerase II subunit B7 [Coccomyxa subellipsoidea C-169]
Length = 176
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 86/126 (68%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ +VEGTCSG++GF + +TG +GKG IR G+ F V+ C+V RPFKGE+L V+
Sbjct: 31 ISEVEGTCSGKYGFIICVTGMGHVGKGSIREGSGTALFKVQYSCVVLRPFKGEVLDCVVS 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNK+GF A+AG +Q+F LIP+D E P++ ++D +V++Q E+ L+I+GT+
Sbjct: 91 SVNKVGFFADAGPLQLFVSNHLIPEDFEFNATGEPAFVSTDEAVRVQAGAEVRLRIVGTR 150
Query: 118 VDVTEI 123
+D +EI
Sbjct: 151 MDASEI 156
>gi|307105977|gb|EFN54224.1| hypothetical protein CHLNCDRAFT_36106 [Chlorella variabilis]
Length = 174
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 83/125 (66%), Gaps = 3/125 (2%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
++VEGTC+GR+GF +++ G GKGLIR G+ F ++ +CI +PFKG+++ VT
Sbjct: 32 QEVEGTCNGRYGFILSVMGVLDTGKGLIREGSGSAVFNLKYKCICMKPFKGQVMDVVVTS 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNKMGF AEAG +Q+F LIP+ E T P Y T+DG KI E+ L+I+GT+V
Sbjct: 92 VNKMGFFAEAGPLQVFVSNHLIPEGFEFNTAHEPCYQTADGEQKIVPGSEVRLRIVGTRV 151
Query: 119 DVTEI 123
D ++I
Sbjct: 152 DASDI 156
>gi|308808622|ref|XP_003081621.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
gi|116060086|emb|CAL56145.1| DNA-directed RNA polymerase subunit E' (ISS) [Ostreococcus tauri]
Length = 1353
Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/124 (42%), Positives = 81/124 (65%), Gaps = 4/124 (3%)
Query: 4 VEGTCSGRHGFAVAITGAESIGKGLI-RNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
VEGTCSGR+GF V +T + + +G++ +GT F V+ C+VFRPFKGE++ A VT V
Sbjct: 1209 VEGTCSGRYGFIVMVTRVDDVSEGVVVDDGTARAKFHVKYDCVVFRPFKGEVVDAVVTQV 1268
Query: 63 NKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NK GF AEAG +Q+F LI +DM+ + Y + D ++IQ+D + ++I+G ++D
Sbjct: 1269 NKFGFFAEAGPLQLFVSNALITEDMQFDSSGENCYVSDDQQIRIQRDASVRVRIVGMRID 1328
Query: 120 VTEI 123
+I
Sbjct: 1329 ANDI 1332
>gi|281204945|gb|EFA79139.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 1025
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTCSGR+GF + IT + + +G + T V V+ + I+F+PFKGE+L A VT V
Sbjct: 778 EVEGTCSGRYGFIITITSVDFVSRGKVLESTGYVVLPVKYRAIIFKPFKGEVLDAVVTKV 837
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL--QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+GF AEAG + IF LIP DM+ Q+ + P + + DGS KI KD E+ L+I GT+
Sbjct: 838 TNLGFFAEAGPLTIFVSTHLIPTDMQFDAQSAN-PCFISDDGSSKISKDNEVRLQIKGTR 896
Query: 118 VDVTEI 123
VD TEI
Sbjct: 897 VDATEI 902
>gi|325304060|tpg|DAA34731.1| TPA_inf: DNA-directed RNA polymerase subunit E' [Amblyomma
variegatum]
gi|346469865|gb|AEO34777.1| hypothetical protein [Amblyomma maculatum]
Length = 171
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+T ++IG GLI+ G V + VR + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVVAVTTIDNIGGGLIQPGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP DM+ + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPLSCFISRHSIPSDMQFDPNSNPPCYRTQDEDIIIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D ++I
Sbjct: 153 DASDI 157
>gi|427786803|gb|JAA58853.1| Putative polymerase rna ii dna directed polypeptide g
[Rhipicephalus pulchellus]
Length = 171
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+T ++IG GLI+ G V + VR + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVVAVTTIDNIGGGLIQPGRGFVVYPVRYKAIVFRPFKGEVLDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP DM+ + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPLSCFISRHSIPSDMQFDPNSNPPCYRTQDEDIIIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D ++I
Sbjct: 153 DASDI 157
>gi|412992538|emb|CCO18518.1| predicted protein [Bathycoccus prasinos]
Length = 149
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 4 VEGTCSGRHGFAVAITGAESIGKGLIRN-GTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+EGTCSGR+GF V IT E++ +G+I + GT F V C+ +RPFK E+L A VT V
Sbjct: 1 MEGTCSGRYGFIVCITHIENVSEGIITDDGTARAKFAVEYDCVAYRPFKNEVLDAVVTQV 60
Query: 63 NKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NK GF AEAG +Q+F L+PDD++ T D Y + DG + I DCE+ +KI+G ++D
Sbjct: 61 NKFGFFAEAGPLQLFVSNSLVPDDVKYVT-DENCYKSDDGQITIGVDCEVRVKIVGMRID 119
Query: 120 VTEI 123
+I
Sbjct: 120 ANDI 123
>gi|442759309|gb|JAA71813.1| Putative dna-directed rna polymerase subunit e' [Ixodes ricinus]
Length = 171
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+ ++IG GLI+ G V + VR IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVVAVMTIDNIGAGLIQPGRGFVVYPVRYTAIVFRPFKGEVLDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP DM+ + P Y T D V IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPLSCFISRHSIPSDMQFDPNSNPPCYRTQDEDVIIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D ++I
Sbjct: 153 DASDI 157
>gi|66811466|ref|XP_639913.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
gi|74854071|sp|Q54P04.1|RPB7_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|60466865|gb|EAL64909.1| DNA-directed RNA polymerase II subunit 7 [Dictyostelium discoideum
AX4]
Length = 172
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+GR+GF + IT + + KG + + V F V+ + I+F+PFKGE+L A VT V
Sbjct: 33 EVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQT-GDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
+GF AEAG + IF LIP DM +P + + DGS KI KD E+ L+I GT+V
Sbjct: 93 TNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTRV 152
Query: 119 DVTEI 123
D TEI
Sbjct: 153 DATEI 157
>gi|145351559|ref|XP_001420140.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580373|gb|ABO98433.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 179
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRN-GTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTCSGR+GF V +T + +G++ + GT F ++ C+VFRPFKGE++ A VT
Sbjct: 32 HEVEGTCSGRYGFIVMVTRLAEVSEGVVTDDGTARAKFHIKYDCVVFRPFKGEVMDAVVT 91
Query: 61 MVNKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNK GF AEAG +Q+F LI +DM+ + Y + D ++IQ+D + ++I+G +
Sbjct: 92 QVNKFGFFAEAGPLQLFVSNALITEDMQFDSSGENCYVSDDQQIRIQRDASVRVRIVGMR 151
Query: 118 VDVTEI 123
+D +I
Sbjct: 152 IDANDI 157
>gi|198430459|ref|XP_002120172.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide G
[Ciona intestinalis]
Length = 172
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G+HGF +A+T ++IG GLI+ G V + ++ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKHGFVIAVTTIDNIGDGLIQPGRGFVLYPIKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQT-GDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP DM+ P Y T D V IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPADMKFDPESHPPCYKTDDEDVVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DANDI 157
>gi|221102923|ref|XP_002157143.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Hydra
magnipapillata]
Length = 172
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF +A+T ++IG G I+ V + V+ + IVFRPFKGE+L A VT
Sbjct: 31 FTEVEGTCTGKYGFVIAVTTIDNIGAGYIQPSRGFVVYPVKYKAIVFRPFKGEVLDAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGT 116
VNK G E G + F IP DME P Y T D V IQ+D E+ LKI+GT
Sbjct: 91 QVNKAGLFTEVGPLSCFISRHSIPTDMEFDPNSSPPCYKTHDEEVVIQQDDEIRLKIVGT 150
Query: 117 QVDVTEI 123
+VD +I
Sbjct: 151 RVDANDI 157
>gi|242005679|ref|XP_002423690.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
gi|212506866|gb|EEB10952.1| mixed-lineage leukemia protein, mll, putative [Pediculus humanus
corporis]
Length = 3311
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG GLI G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 31 EVEGTCTGKYGFVIAVTLIDNIGAGLILPGQGFVVYPVKYRAIVFRPFKGEVLDAVVTQV 90
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ + P Y + D V IQ D E+ LKI+GT+V
Sbjct: 91 NKVGMFAEIGPLSCFISHHSIPADMQFCPNFNPPCYKSKDEDVVIQADDEIRLKIVGTRV 150
Query: 119 DVTEI 123
D + I
Sbjct: 151 DASGI 155
>gi|321461059|gb|EFX72094.1| hypothetical protein DAPPUDRAFT_308561 [Daphnia pulex]
Length = 172
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKG++L A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGQVLDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP DM+ P Y T D V IQ+D E+ +KI+G +V
Sbjct: 93 NKVGLFTEIGPLSCFISRHSIPSDMQFDPNSTPPCYKTQDEDVVIQQDDEIRIKIVGLRV 152
Query: 119 DVTEI 123
D T+I
Sbjct: 153 DATDI 157
>gi|260787962|ref|XP_002589020.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
gi|229274193|gb|EEN45031.1| hypothetical protein BRAFLDRAFT_124918 [Branchiostoma floridae]
Length = 172
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGVGAIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP DME + P Y T+D V IQ+D E+ +KI+GT++
Sbjct: 93 NKVGLFTEVGPMSCFVSRHSIPSDMEFDPNSNPPCYKTADEDVVIQQDDEIRIKIVGTRI 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DANDI 157
>gi|209733032|gb|ACI67385.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 83/125 (66%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G++ F IP +ME + P Y T+D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGSMSCFISRHSIPSEMEFDPNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|312072366|ref|XP_003139033.1| polymerase [Loa loa]
gi|307765805|gb|EFO25039.1| DNA-directed RNA polymerase II subunit RPB7 [Loa loa]
Length = 174
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 84/127 (66%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF VA+T ++IG GLI+ G V + V+ + IVFRPFKG+++ A V
Sbjct: 31 FNEVEGTCTGKYGFVVAVTTIDNIGAGLIQPGRGFVLYPVKYKAIVFRPFKGQVVDAVVN 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VNK+G + G + F IP DME + + P Y T+D SV I++D E+ +K+IGT
Sbjct: 91 QVNKVGLFCDIGPLSCFVSRHCIPPDMEFEPNSNPPCYKTADESVVIKQDDEIRVKLIGT 150
Query: 117 QVDVTEI 123
+VD ++I
Sbjct: 151 RVDASDI 157
>gi|291222602|ref|XP_002731309.1| PREDICTED: DNA directed RNA polymerase II polypeptide G-like
[Saccoglossus kowalevskii]
Length = 172
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G I+ V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGRIQPSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP DME + P Y T D V IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPLSCFVSRHSIPSDMEFDPNSNPPCYKTQDEDVVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D ++I
Sbjct: 153 DASDI 157
>gi|156378584|ref|XP_001631222.1| predicted protein [Nematostella vectensis]
gi|156218258|gb|EDO39159.1| predicted protein [Nematostella vectensis]
Length = 172
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTCSG++GF +A+T ++IG G I+ G V + V+ + IVFRPFKGE+L A +T V
Sbjct: 33 EVEGTCSGKYGFIIAVTTIDNIGVGHIQPGRGFVVYPVKYKAIVFRPFKGEVLDAVITQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP DME + P Y T D V Q+D E+ L+++GT+V
Sbjct: 93 NKLGLFTEIGPLSCFVSRHSIPPDMEFDPNSNPPCYKTKDEDVVYQQDDEIRLRVVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DANDI 157
>gi|259089327|ref|NP_001158701.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|209737754|gb|ACI69746.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
gi|225705948|gb|ACO08820.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Oncorhynchus
mykiss]
gi|225717052|gb|ACO14372.1| DNA-directed RNA polymerase II subunit RPB7 [Esox lucius]
gi|303664575|gb|ADM16147.1| DNA-directed RNA polymerase II subunit RPB7 [Salmo salar]
Length = 172
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T+D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|149062301|gb|EDM12724.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Rattus norvegicus]
Length = 159
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 82/126 (65%), Gaps = 4/126 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEIE 124
D +I+
Sbjct: 153 DKNDID 158
>gi|443718113|gb|ELU08859.1| hypothetical protein CAPTEDRAFT_177843 [Capitella teleta]
Length = 172
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE+L A VT
Sbjct: 31 FTEVEGTCTGKYGFVIAVTTIDNIGAGIIQPGRGFVLYPVKYKAIVFRPFKGEVLDAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VNK+G E G + F IP + E + P Y T D + IQ D E+ LKI+GT
Sbjct: 91 QVNKVGLFTEIGPLSCFISRHSIPSEYEFDPNNNPPCYKTKDEDILIQTDNEIRLKIVGT 150
Query: 117 QVDVTEI 123
+VD ++I
Sbjct: 151 RVDASDI 157
>gi|328789158|ref|XP_624976.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
mellifera]
gi|380030530|ref|XP_003698899.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Apis
florea]
Length = 173
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+T ++IG G+I+ G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ + P Y T + V IQ D E+ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPADMQFCPNINPPCYKTKEEDVIIQPDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|328871329|gb|EGG19700.1| RFT1 family protein [Dictyostelium fasciculatum]
Length = 662
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 83/127 (65%), Gaps = 7/127 (5%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+VEGTCSGR+GF + IT + + KG + + V F V+ + I+F+PFKGE++ A VT
Sbjct: 523 SEVEGTCSGRYGFIITITSVDFVSKGKVLESSGYVVFQVKYKAIIFKPFKGEVMDAVVTK 582
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMEL--QTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
V +GF AEAG + IF LIP DM+ Q+ + P + + DGS KI KD E+ L+I GT
Sbjct: 583 VTNLGFFAEAGPLTIFVSTHLIPPDMQFDAQSAN-PCFVSEDGS-KISKDDEVRLQIKGT 640
Query: 117 QVDVTEI 123
+VD TEI
Sbjct: 641 RVDATEI 647
>gi|324530828|gb|ADY49116.1| DNA-directed RNA polymerase II subunit RPB7 [Ascaris suum]
Length = 174
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF +A+T ++IG GLI+ G V + V+ + IVFRPFKG+++ A V+
Sbjct: 31 FNEVEGTCTGKYGFVIAVTTIDNIGSGLIQPGRGFVVYPVKYKAIVFRPFKGQVVDAVVS 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VNK+G + G + F IP DME + + P Y T D SV I++D E+ +K+IGT
Sbjct: 91 QVNKVGIFCDIGPMSCFVSRHCIPPDMEFEPNANPPCYKTQDESVVIKQDDEIRVKLIGT 150
Query: 117 QVDVTEI 123
+VD +I
Sbjct: 151 RVDAADI 157
>gi|159467891|ref|XP_001692125.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158278852|gb|EDP04615.1| DNA-directed RNA polymerase II, 19 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 176
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 83/127 (65%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIR-NGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+ + EGTC+G++G+ VA+T + IG+G IR + + TF V CIV RP+KGE+L A V
Sbjct: 31 IAETEGTCTGKYGYVVAVTKVDDIGRGRIRQDQSGYATFEVSYGCIVCRPYKGEVLDAVV 90
Query: 60 TMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
T VNKMGF A+AG +Q+F LIPD+ E T D S+ + D + +IQ + ++I+G
Sbjct: 91 TSVNKMGFFAQAGPLQLFVTQHLIPDEFEFDTSDDNSWISMDQTTRIQGGTHVRIRIVGI 150
Query: 117 QVDVTEI 123
+ D +E+
Sbjct: 151 KYDPSEV 157
>gi|327289535|ref|XP_003229480.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Anolis
carolinensis]
Length = 202
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 63 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 122
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D V IQ+D E+ LKI+GT+V
Sbjct: 123 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTIDEDVVIQQDDEIRLKIVGTRV 182
Query: 119 DVTEI 123
D +I
Sbjct: 183 DKNDI 187
>gi|213972531|ref|NP_001135427.1| DNA-directed RNA polymerase II subunit RPB7 [Ovis aries]
gi|212378988|gb|ACJ24821.1| DNA-directed RNA polymerase II polypeptide G [Ovis aries]
Length = 172
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKSKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|307183360|gb|EFN70218.1| DNA-directed RNA polymerase II subunit RPB7 [Camponotus floridanus]
Length = 249
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+T ++IG G+I+ G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 109 EVEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQV 168
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP+DM+ P+ Y + + V IQ D E+ LKI+GT+V
Sbjct: 169 NKVGMFAEIGPLSCFISHHSIPEDMQFCPNVNPACYKSKEEDVVIQADDEIRLKIVGTRV 228
Query: 119 DVTEI 123
D T I
Sbjct: 229 DATGI 233
>gi|229365728|gb|ACQ57844.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEVGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|41054447|ref|NP_955963.1| DNA-directed RNA polymerase II subunit RPB7 [Danio rerio]
gi|62858849|ref|NP_001017065.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|147900153|ref|NP_001091291.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus laevis]
gi|50401534|sp|Q7ZW41.1|RPB7_DANRE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7
gi|28278826|gb|AAH45299.1| Polymerase (RNA) II (DNA directed) polypeptide G-like [Danio rerio]
gi|89266814|emb|CAJ83494.1| polymerase (RNA) II (DNA directed) polypeptide G [Xenopus
(Silurana) tropicalis]
gi|123959696|gb|AAI28969.1| LOC100037112 protein [Xenopus laevis]
gi|134025964|gb|AAI35153.1| hypothetical protein LOC549819 [Xenopus (Silurana) tropicalis]
gi|182890184|gb|AAI64883.1| Polr2gl protein [Danio rerio]
Length = 172
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D V IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|255073033|ref|XP_002500191.1| predicted protein [Micromonas sp. RCC299]
gi|226515453|gb|ACO61449.1| predicted protein [Micromonas sp. RCC299]
Length = 185
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRN-GTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+VEG+C+G+HG+ V +T +I +G++ + GT F V I FRPFKG++L A VT
Sbjct: 33 EVEGSCTGKHGYIVMVTDFTNISEGMVTDDGTARAKFRVEFDAIAFRPFKGQVLDAVVTE 92
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQ 117
VNK GF AEAG + +F LI DDM+ ++ D + Y +SD SV +QK+ E+ ++++G +
Sbjct: 93 VNKFGFFAEAGPMNLFVSNQLISDDMKFESIDNANRYVSSDKSVSVQKNGEVRVRVVGMR 152
Query: 118 VDVTEI 123
+D EI
Sbjct: 153 IDAQEI 158
>gi|148701426|gb|EDL33373.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Mus musculus]
Length = 159
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|432878328|ref|XP_004073303.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oryzias latipes]
Length = 171
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|355566390|gb|EHH22769.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
mulatta]
gi|355752017|gb|EHH56137.1| DNA-directed RNA polymerase II subunit RPB7, partial [Macaca
fascicularis]
Length = 169
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|344295631|ref|XP_003419515.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Loxodonta africana]
Length = 232
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|281352567|gb|EFB28151.1| hypothetical protein PANDA_014914 [Ailuropoda melanoleuca]
Length = 165
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 29 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 88
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 89 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 148
Query: 119 DVTEI 123
D +I
Sbjct: 149 DKNDI 153
>gi|4505947|ref|NP_002687.1| DNA-directed RNA polymerase II subunit RPB7 [Homo sapiens]
gi|13385826|ref|NP_080605.1| DNA-directed RNA polymerase II subunit RPB7 [Mus musculus]
gi|16758826|ref|NP_446400.1| DNA-directed RNA polymerase II subunit RPB7 [Rattus norvegicus]
gi|62752835|ref|NP_001015633.1| DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|388452830|ref|NP_001253453.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|57099729|ref|XP_533260.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Canis lupus
familiaris]
gi|291409522|ref|XP_002721043.1| PREDICTED: DNA directed RNA polymerase II polypeptide G
[Oryctolagus cuniculus]
gi|296218536|ref|XP_002755481.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Callithrix
jacchus]
gi|301779986|ref|XP_002925403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ailuropoda melanoleuca]
gi|332836746|ref|XP_001142605.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
troglodytes]
gi|335281668|ref|XP_003353863.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Sus
scrofa]
gi|338712501|ref|XP_001495008.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Equus
caballus]
gi|354504568|ref|XP_003514346.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
gi|397516683|ref|XP_003828553.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Pan
paniscus]
gi|402893073|ref|XP_003909728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Papio anubis]
gi|402893075|ref|XP_003909729.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Papio anubis]
gi|403255132|ref|XP_003920301.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 1
[Saimiri boliviensis boliviensis]
gi|403255134|ref|XP_003920302.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 isoform 2
[Saimiri boliviensis boliviensis]
gi|410974282|ref|XP_003993576.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Felis
catus]
gi|426368868|ref|XP_004051423.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Gorilla
gorilla gorilla]
gi|50403597|sp|P62489.1|RPB7_RAT RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|50403601|sp|P62487.1|RPB7_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G; AltName:
Full=RNA polymerase II 19 kDa subunit; Short=RPB19
gi|50403602|sp|P62488.1|RPB7_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|73917870|sp|Q5E9B8.1|RPB7_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName:
Full=DNA-directed RNA polymerase II subunit G
gi|83754529|pdb|2C35|B Chain B, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754531|pdb|2C35|D Chain D, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754533|pdb|2C35|F Chain F, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|83754535|pdb|2C35|H Chain H, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
gi|929921|gb|AAA86500.1| RNA polymerase II subunit hsRPB7 [Homo sapiens]
gi|1360132|emb|CAA96468.1| RNA polymerase II RPB7 subunit-like protein [Rattus norvegicus]
gi|1924974|gb|AAB96827.1| RNA polymerase II seventh subunit [Homo sapiens]
gi|12846312|dbj|BAB27119.1| unnamed protein product [Mus musculus]
gi|12847875|dbj|BAB27743.1| unnamed protein product [Mus musculus]
gi|12850308|dbj|BAB28670.1| unnamed protein product [Mus musculus]
gi|12856725|dbj|BAB30760.1| unnamed protein product [Mus musculus]
gi|33243991|gb|AAH55278.1| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|37514866|gb|AAH05580.3| Polymerase (RNA) II (DNA directed) polypeptide G [Mus musculus]
gi|38014576|gb|AAH60595.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|38051973|gb|AAH60550.1| Polymerase (RNA) II (DNA directed) polypeptide G [Rattus
norvegicus]
gi|59858369|gb|AAX09019.1| DNA directed RNA polymerase II polypeptide G [Bos taurus]
gi|85566845|gb|AAI12163.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|85567601|gb|AAI12165.1| DNA directed RNA polymerase II polypeptide G [Homo sapiens]
gi|119594498|gb|EAW74092.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_c
[Homo sapiens]
gi|148701424|gb|EDL33371.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Mus musculus]
gi|149062299|gb|EDM12722.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Rattus norvegicus]
gi|189053261|dbj|BAG35067.1| unnamed protein product [Homo sapiens]
gi|208967084|dbj|BAG73556.1| polymerase (RNA) II (DNA directed) polypeptide G [synthetic
construct]
gi|296471655|tpg|DAA13770.1| TPA: DNA-directed RNA polymerase II subunit RPB7 [Bos taurus]
gi|380785401|gb|AFE64576.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|383414681|gb|AFH30554.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|384947774|gb|AFI37492.1| DNA-directed RNA polymerase II subunit RPB7 [Macaca mulatta]
gi|410267352|gb|JAA21642.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410294946|gb|JAA26073.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|410351171|gb|JAA42189.1| polymerase (RNA) II (DNA directed) polypeptide G [Pan troglodytes]
gi|1098305|prf||2115374A RNA polymerase II
Length = 172
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|149641280|ref|XP_001511485.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Ornithorhynchus anatinus]
gi|348514213|ref|XP_003444635.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Oreochromis niloticus]
gi|395544392|ref|XP_003774094.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Sarcophilus
harrisii]
gi|410913687|ref|XP_003970320.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Takifugu rubripes]
gi|229367270|gb|ACQ58615.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|332024088|gb|EGI64305.1| DNA-directed RNA polymerase II subunit RPB7 [Acromyrmex echinatior]
Length = 267
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+T ++IG G+I+ G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 119 EVEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQV 178
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP+DM+ P+ Y + + V IQ D E+ LKI+GT+V
Sbjct: 179 NKVGMFAEIGPLSCFISHHSIPEDMQFCPNVNPACYKSKEEDVVIQADDEIRLKIVGTRV 238
Query: 119 DVTEI 123
D T I
Sbjct: 239 DATGI 243
>gi|355712735|gb|AES04448.1| polymerase II polypeptide G [Mustela putorius furo]
Length = 183
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 45 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 104
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 105 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 164
Query: 119 DVTEI 123
D +I
Sbjct: 165 DKNDI 169
>gi|72013666|ref|XP_780458.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
gi|115911735|ref|XP_001175504.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Strongylocentrotus purpuratus]
Length = 172
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGMIQPSRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G + G + F IP DME P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTDIGPLSCFISRHSIPADMEFDPNSSPPCYKTKDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D ++I
Sbjct: 153 DASDI 157
>gi|417408664|gb|JAA50874.1| Putative dna-directed rna polymerase ii subunit rpb7-like protein,
partial [Desmodus rotundus]
Length = 209
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 70 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 129
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 130 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 189
Query: 119 DVTEI 123
D +I
Sbjct: 190 DKNDI 194
>gi|322791340|gb|EFZ15830.1| hypothetical protein SINV_10601 [Solenopsis invicta]
Length = 169
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+T ++IG G+I+ G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 29 EVEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQV 88
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP+DM+ P+ Y + + V IQ D E+ LKI+GT+V
Sbjct: 89 NKVGMFAEIGPLSCFISHHSIPEDMQFCPNVNPACYKSKEEDVVIQADDEIRLKIVGTRV 148
Query: 119 DVTEI 123
D T I
Sbjct: 149 DATGI 153
>gi|383865506|ref|XP_003708214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Megachile rotundata]
Length = 173
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+T ++IG G+I+ G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ + P Y + + V IQ D E+ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPADMQFCPNVNPPCYKSKEEDVIIQPDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|340711605|ref|XP_003394365.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Bombus
terrestris]
gi|350416078|ref|XP_003490834.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Bombus
impatiens]
Length = 173
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+T ++IG G+I+ G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ + P Y + + V IQ D E+ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPADMQFCPNINPPCYKSKEEDVIIQPDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|307201488|gb|EFN81256.1| DNA-directed RNA polymerase II subunit RPB7 [Harpegnathos saltator]
Length = 179
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 82/125 (65%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+T ++IG G+I+ G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVVAVTTIDNIGAGIIQPGQGFVIYPVKYKAIVFRPFKGEVLDAIVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP+DM+ P+ Y + + V IQ D E+ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPEDMQFCPNVNPACYKSKEEDVIIQADDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|229367494|gb|ACQ58727.1| DNA-directed RNA polymerase II subunit RPB7 [Anoplopoma fimbria]
Length = 172
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGGGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|334332599|ref|XP_001362540.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Monodelphis domestica]
Length = 201
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|90081264|dbj|BAE90112.1| unnamed protein product [Macaca fascicularis]
Length = 221
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 82 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 141
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 142 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 201
Query: 119 DVTEI 123
D +I
Sbjct: 202 DKNDI 206
>gi|440790049|gb|ELR11338.1| DNAdirected RNA polymerase II subunit RPB7, putative, partial
[Acanthamoeba castellanii str. Neff]
Length = 153
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTCSGR+GF + +T ++G G I +GT +VTF V + IVFRPFKGE++ A VT V
Sbjct: 31 EVEGTCSGRYGFIIMVTSIATVGLGKINDGTGMVTFPVAYRAIVFRPFKGEVVDAVVTQV 90
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWL 111
NKMGF+AE G +Q+F LIP DM + + + D SVKI KD E +
Sbjct: 91 NKMGFMAEVGPLQVFVSKHLIPTDMTFDPTE-HCFASEDESVKISKDDEFAI 141
>gi|225709388|gb|ACO10540.1| DNA-directed RNA polymerase II subunit RPB7 [Caligus rogercresseyi]
Length = 172
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE+L A VT
Sbjct: 31 FTEVEGTCTGKYGFVIAVTTIDNIGAGIIQPGNGFVIYPVKYKAIVFRPFKGEVLDAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VNK+G E G F IP DM + P Y T++ V I +D ++ LKI+GT
Sbjct: 91 QVNKVGLFTEIGPPSCFISRHSIPADMTFDPNSNPPCYKTNNEEVTIHQDDDIRLKIVGT 150
Query: 117 QVDVTEI 123
+VD ++I
Sbjct: 151 RVDASDI 157
>gi|431910359|gb|ELK13432.1| DNA-directed RNA polymerase II subunit RPB7 [Pteropus alecto]
Length = 223
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + I++D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIKQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|219879810|ref|NP_001137380.1| RNA polymerase II subunit 7 [Nasonia vitripennis]
Length = 173
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEG C+G++GF VA+T ++IG G+I+ G V + V+ + IVFRPFKGE+L VT V
Sbjct: 33 EVEGNCTGKYGFVVAVTTIDNIGAGIIQPGQGFVVYPVKYKAIVFRPFKGEVLDGIVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ + P Y + D V IQ D E+ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPADMQFCPNVNPPCYKSKDEDVVIQADDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|444711067|gb|ELW52021.1| TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L [Tupaia chinensis]
Length = 820
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 5/125 (4%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAIVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D V+ Q+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMD-EVRHQQDDEIRLKIVGTRV 151
Query: 119 DVTEI 123
D +I
Sbjct: 152 DKNDI 156
>gi|170030019|ref|XP_001842888.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
gi|167865348|gb|EDS28731.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Culex
quinquefasciatus]
Length = 173
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T + IG G+I+ G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDDIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ G+ P Y + D V I + ++ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVIALEDKIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|241176966|ref|XP_002399817.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
gi|215495205|gb|EEC04846.1| DNA-directed RNA polymerase subunit E', putative [Ixodes
scapularis]
Length = 173
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF VA+ ++IG GLI+ G V + VR IVFRPFKGE+L A VT V
Sbjct: 31 EVEGTCTGKYGFVVAVMTIDNIGAGLIQPGRGFVVYPVRYTAIVFRPFKGEVLDAVVTQV 90
Query: 63 NKMGFLAEAGAVQI---FCLIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+ + + F IP DM+ + P Y T D V IQ+D E+ LKI+GT+V
Sbjct: 91 NKVSGVGAPDTDSVCISFQSIPSDMQFDPNSNPPCYRTQDEDVIIQQDDEIRLKIVGTRV 150
Query: 119 DVTEI 123
D ++I
Sbjct: 151 DASDI 155
>gi|268565845|ref|XP_002639564.1| C. briggsae CBR-RPB-7 protein [Caenorhabditis briggsae]
Length = 197
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF +A+T ++IG GLI+ G V + VR + IVFRPFKG+++ VT
Sbjct: 54 FNEVEGTCTGKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVT 113
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VNK+G + G + F IP DME + P Y T+D + I+ D E+ +K+IGT
Sbjct: 114 QVNKVGIFCDIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEATVIRNDDEIRVKLIGT 173
Query: 117 QVDVTEI 123
+VD +I
Sbjct: 174 RVDANDI 180
>gi|308473109|ref|XP_003098780.1| CRE-RPB-7 protein [Caenorhabditis remanei]
gi|308268076|gb|EFP12029.1| CRE-RPB-7 protein [Caenorhabditis remanei]
Length = 174
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF +A+T ++IG GLI+ G V + VR + IVFRPFKG+++ VT
Sbjct: 31 FNEVEGTCTGKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VNK+G + G + F IP DME + P Y T+D + I+ D E+ +K+IGT
Sbjct: 91 QVNKVGIFCDIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEATIIRNDDEIRVKLIGT 150
Query: 117 QVDVTEI 123
+VD +I
Sbjct: 151 RVDANDI 157
>gi|387018224|gb|AFJ51230.1| DNA-directed RNA polymerase II subunit RPB7-like [Crotalus
adamanteus]
Length = 172
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAIVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME T + P Y T D + IQ + + LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEYDTNSNPPCYKTVDEDIVIQPEDNIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|73586691|gb|AAI03081.1| Polymerase (RNA) II (DNA directed) polypeptide G [Bos taurus]
Length = 172
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++ F +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYCFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|157136015|ref|XP_001656728.1| DNA-directed RNA polymerase II 19 kDa polypeptide rpb7 [Aedes
aegypti]
gi|108881096|gb|EAT45321.1| AAEL003401-PA [Aedes aegypti]
Length = 173
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T + IG GLI G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDDIGSGLILPGQGFVVYPVKYKAIVFRPFKGEVLDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G A+ G + F IP DM+ G+ P Y + D V I + ++ LKI+GT+V
Sbjct: 93 NKVGMFAQIGPLSCFISHHSIPADMQFCPNGNPPCYKSQDEDVVIALEDKIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|391343700|ref|XP_003746144.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Metaseiulus occidentalis]
Length = 174
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T +SIG GLI+ V + V+ + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTAIDSIGDGLIQPNRGFVVYPVKYKAIVFRPFKGEVLDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NK+G E G + F IP DM+ P + IQ D ++ LKI+GT+VD
Sbjct: 93 NKVGIFTEIGPLSCFISRHSIPPDMQFDPNSTPPCYKNAEDDCIQADDDIRLKIVGTRVD 152
Query: 120 VTEI 123
T+I
Sbjct: 153 ATDI 156
>gi|328852061|gb|EGG01210.1| hypothetical protein MELLADRAFT_50187 [Melampsora larici-populina
98AG31]
Length = 172
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEGTC+GR G+ +A+ SI G I+ GT + F+++ IV +PFKGE++ V
Sbjct: 32 RDVEGTCTGRFGYIIAVLSIRSISAGTIQPGTGMAEFVIKYSAIVLKPFKGEVVDGIVGQ 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNKMGF E G +Q F LIP D+ + P +++ + I+K + LKI+GT+
Sbjct: 92 VNKMGFFVEVGPLQAFVSSHLIPSDLRFDPNANPPCFSSDEDQATIEKGTRIRLKIVGTR 151
Query: 118 VDVTEI 123
VD TEI
Sbjct: 152 VDATEI 157
>gi|17510349|ref|NP_491093.1| Protein RPB-7 [Caenorhabditis elegans]
gi|351064549|emb|CCD72992.1| Protein RPB-7 [Caenorhabditis elegans]
Length = 197
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF +A+T ++IG GLI+ G V + VR + IVFRPFKG+++ VT
Sbjct: 54 FNEVEGTCTGKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVT 113
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VNK+G + G + F IP DME + P Y T+D + I+ D E+ +K+IGT
Sbjct: 114 QVNKVGIFCDIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEANVIRNDDEIRVKLIGT 173
Query: 117 QVDVTEI 123
+VD +I
Sbjct: 174 RVDANDI 180
>gi|341885978|gb|EGT41913.1| CBN-RPB-7 protein [Caenorhabditis brenneri]
gi|341897170|gb|EGT53105.1| hypothetical protein CAEBREN_28990 [Caenorhabditis brenneri]
Length = 174
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF +A+T ++IG GLI+ G V + VR + IVFRPFKG+++ V+
Sbjct: 31 FNEVEGTCTGKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVS 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VNK+G + G + F IP DME + P Y T+D + I+ D E+ +K+IGT
Sbjct: 91 QVNKVGIFCDIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEATVIRNDDEIRVKLIGT 150
Query: 117 QVDVTEI 123
+VD +I
Sbjct: 151 RVDANDI 157
>gi|226372376|gb|ACO51813.1| DNA-directed RNA polymerase II subunit RPB7 [Rana catesbeiana]
Length = 172
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A V+ V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVSQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D V IQ+ E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQGDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|24647020|ref|NP_731983.1| Rpb7 [Drosophila melanogaster]
gi|195328827|ref|XP_002031113.1| GM25797 [Drosophila sechellia]
gi|195570746|ref|XP_002103365.1| GD20374 [Drosophila simulans]
gi|23171325|gb|AAF55145.2| Rpb7 [Drosophila melanogaster]
gi|66772833|gb|AAY55728.1| IP02321p [Drosophila melanogaster]
gi|117935442|gb|ABK57062.1| IP02323p [Drosophila melanogaster]
gi|194120056|gb|EDW42099.1| GM25797 [Drosophila sechellia]
gi|194199292|gb|EDX12868.1| GD20374 [Drosophila simulans]
gi|220951186|gb|ACL88136.1| Rpb7-PA [synthetic construct]
gi|220960522|gb|ACL92797.1| Rpb7-PA [synthetic construct]
Length = 173
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T + IG G+I+ G V + V+ + IVFRPFKGE+L A V +
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDQIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQI 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ G+ P Y + D V I + ++ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|313230246|emb|CBY07950.1| unnamed protein product [Oikopleura dioica]
Length = 172
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+VEG+C+G HGF + +T SIG G I G F ++ IVFRPFKGE++ VT
Sbjct: 32 SEVEGSCTGEHGFVIGVTNIHSIGDGDILAGRGFCLFPIKYAAIVFRPFKGEVVDGVVTQ 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQT-GDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNK+G + + G + F IP DME + P Y T D I++D E+ LKI+GT+
Sbjct: 92 VNKVGLMVDVGPMACFISKHSIPSDMEFDPDSNPPCYKTKDEDTAIKQDDEIRLKIVGTR 151
Query: 118 VDVTEI 123
VDV EI
Sbjct: 152 VDVNEI 157
>gi|91082423|ref|XP_970313.1| PREDICTED: similar to GA16051-PA [Tribolium castaneum]
gi|270007516|gb|EFA03964.1| hypothetical protein TcasGA2_TC014109 [Tribolium castaneum]
Length = 173
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T +SIG GLI G V + V+ + IVFRPFKGE+L A V V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDSIGAGLILPGQGYVVYPVKYKAIVFRPFKGEVLDAVVRQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP +ME P Y T D V I + E+ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPAEMEFCPNVNPQCYKTKDEDVVIHAEGEIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|125777779|ref|XP_001359725.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|194767707|ref|XP_001965956.1| GF11824 [Drosophila ananassae]
gi|194900932|ref|XP_001980009.1| GG20814 [Drosophila erecta]
gi|195157158|ref|XP_002019463.1| GL12210 [Drosophila persimilis]
gi|195444928|ref|XP_002070093.1| GK11212 [Drosophila willistoni]
gi|195501415|ref|XP_002097786.1| GE26402 [Drosophila yakuba]
gi|198477563|ref|XP_002136553.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
gi|54639475|gb|EAL28877.1| GA16051 [Drosophila pseudoobscura pseudoobscura]
gi|190619799|gb|EDV35323.1| GF11824 [Drosophila ananassae]
gi|190651712|gb|EDV48967.1| GG20814 [Drosophila erecta]
gi|194116054|gb|EDW38097.1| GL12210 [Drosophila persimilis]
gi|194166178|gb|EDW81079.1| GK11212 [Drosophila willistoni]
gi|194183887|gb|EDW97498.1| GE26402 [Drosophila yakuba]
gi|198142841|gb|EDY71554.1| GA27654 [Drosophila pseudoobscura pseudoobscura]
Length = 173
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T + IG G+I+ G V + V+ + IVFRPFKGE+L A V +
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDQIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQI 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ G+ P Y + D V I + ++ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|339522289|gb|AEJ84309.1| DNA-directed RNA polymerase II subunit G [Capra hircus]
Length = 172
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+ EGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EAEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +M + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMGFYPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|170592835|ref|XP_001901170.1| polymerase [Brugia malayi]
gi|158591237|gb|EDP29850.1| polymerase, putative [Brugia malayi]
Length = 171
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 84/127 (66%), Gaps = 7/127 (5%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF VA+T ++IG GLI+ G V + V+ + IVFRPFKG+++ A
Sbjct: 31 FNEVEGTCTGKYGFVVAVTTIDNIGAGLIQPGRGFVLYPVKYKAIVFRPFKGQVVDA--- 87
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
+VN++G + G + F IP DME + + P Y T+D SV I++D E+ +K+IGT
Sbjct: 88 VVNQVGLFCDIGPLSCFVSRHCIPPDMEFEPNSNPPCYKTADESVVIKQDDEIRVKLIGT 147
Query: 117 QVDVTEI 123
+VD ++I
Sbjct: 148 RVDASDI 154
>gi|402223848|gb|EJU03912.1| hypothetical protein DACRYDRAFT_49099, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 166
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 6/125 (4%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG +G+ +A+ +G GL+ G F + IVF+PFKGE+L + VT V
Sbjct: 29 DVEGTCSGEYGYIIAVLDVIDVGVGLVSVGAGHAEFTTTYRAIVFKPFKGEVLDSVVTSV 88
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDL-PSYTTSDGSVKIQKDCELWLKIIGTQV 118
NKMGF AE G +Q+F LI DM + P + +SD I+KD + LK++GT+V
Sbjct: 89 NKMGFFAEVGPLQVFVSAHLIHPDMRFDSAAANPCFASSDQV--IEKDTHVRLKLVGTRV 146
Query: 119 DVTEI 123
D TEI
Sbjct: 147 DATEI 151
>gi|357630895|gb|EHJ78714.1| putative mixed-lineage leukemia protein, mll [Danaus plexippus]
Length = 173
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T +SIG GLI+ G V + V+ + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDSIGAGLIQPGQGFVVYPVKYKAIVFRPFKGEVLDAIVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G A+ G + F IP DME + P Y + IQ++ + LKI+GT+V
Sbjct: 93 NKVGMFAQIGPLSCFISHHSIPTDMEFCPNVNPPCYKSKQEDNVIQEEDVIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|195036122|ref|XP_001989520.1| GH18755 [Drosophila grimshawi]
gi|195111302|ref|XP_002000218.1| GI22645 [Drosophila mojavensis]
gi|195389416|ref|XP_002053373.1| GJ23373 [Drosophila virilis]
gi|193893716|gb|EDV92582.1| GH18755 [Drosophila grimshawi]
gi|193916812|gb|EDW15679.1| GI22645 [Drosophila mojavensis]
gi|194151459|gb|EDW66893.1| GJ23373 [Drosophila virilis]
Length = 173
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T + IG G+I+ G V + V+ + IVFRPFKGE+L A V +
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDLIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQI 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ G+ P Y + D V I + ++ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|405954685|gb|EKC22056.1| DNA-directed RNA polymerase II subunit RPB7, partial [Crassostrea
gigas]
Length = 167
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G I+ V + V+ + IVFRPFKGE+L A VT V
Sbjct: 29 EVEGTCTGKYGFVIAVTTIDNIGAGTIQPSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQV 88
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y + IQ+D E+ LKI+GT+V
Sbjct: 89 NKVGLFTEIGPLSCFVSRHSIPANMEFDPNSNPPCYKNKEEDEVIQQDDEIRLKIVGTRV 148
Query: 119 DVTEI 123
D +I
Sbjct: 149 DAKDI 153
>gi|331246804|ref|XP_003336033.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309315023|gb|EFP91614.1| DNA-directed RNA polymerase II subunit rpb7 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 172
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 77/126 (61%), Gaps = 4/126 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEGTC+GR G+ +A+ SI G I+ GT + F+++ IV +PFKGE++ V
Sbjct: 32 RDVEGTCTGRFGYIIAVLRTLSISAGTIQPGTGMAEFVMKYSAIVLKPFKGEVVDGIVGQ 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNKMGF E G +Q F LIP D++ + P +++ + I+K + LKI+GT+
Sbjct: 92 VNKMGFFVEVGPLQAFVSSHLIPSDLKFDPNANPPCFSSDEDQATIEKGTRIRLKIVGTR 151
Query: 118 VDVTEI 123
VD TEI
Sbjct: 152 VDATEI 157
>gi|340373532|ref|XP_003385295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Amphimedon queenslandica]
Length = 172
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G+HGF +A+T ++IG G+++ G + + V+ + IVFRPFKGE+L A V V
Sbjct: 33 EVEGTCTGKHGFVIAVTTIDNIGLGMLQTGRGVALYPVKYKAIVFRPFKGEVLDALVIQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G + G + F IP +ME P Y TS+ V IQ+ L ++I+GT+V
Sbjct: 93 NKLGLFTQIGPLTCFISRHSIPPEMEFDPNSTPHCYRTSESDVLIQEGNYLRVRIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DANDI 157
>gi|388582123|gb|EIM22429.1| hypothetical protein WALSEDRAFT_60067 [Wallemia sebi CBS 633.66]
Length = 171
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTC+GR+G+ +A+ G G + G F+V+ IV++PFKGE++ V V
Sbjct: 34 DVEGTCTGRYGYIIAVLSISDPGSGTVLPGVGTAEFVVKYTAIVYKPFKGEVVDGQVASV 93
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF A+ G +Q+F LIP D++ P+ +S+ V I+K ++ LKI+GT+VD
Sbjct: 94 NKMGFFADVGPLQVFVSSHLIPQDIKFDPSSNPACFSSEDQV-IEKGSKVRLKIVGTRVD 152
Query: 120 VTEI 123
TEI
Sbjct: 153 ATEI 156
>gi|297688430|ref|XP_002821689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB7 [Pongo abelii]
Length = 229
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 5/126 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGT-VLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+VEGTC+G++GF +A+T ++IG G G +LV + V+ + IVFRPFKGE++ A VT
Sbjct: 89 EVEGTCTGKYGFVIAVTTIDNIGAGGSSQGRGLLVLYPVKYKAIVFRPFKGEVVDAVVTQ 148
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+
Sbjct: 149 VNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR 208
Query: 118 VDVTEI 123
VD +I
Sbjct: 209 VDKNDI 214
>gi|405952867|gb|EKC20626.1| DNA-directed RNA polymerase II subunit RPB7 [Crassostrea gigas]
Length = 191
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G I+ V + V+ + IVFRPFKGE+L A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGTIQPSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPLSCFVSRHSIPANMEFDPNSNPPCYKNKEEDEVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DAKDI 157
>gi|312378597|gb|EFR25129.1| hypothetical protein AND_09806 [Anopheles darlingi]
Length = 983
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T + IG G I+ G V + V+ + IVFRPFKGE+L A V V
Sbjct: 843 EVEGTCTGKYGFVIAVTTIDDIGSGTIQPGQGFVVYPVKYKAIVFRPFKGEVLDATVKQV 902
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ G P Y +G I + ++ LKI+GT+V
Sbjct: 903 NKVGMFAEIGPLSCFISHHSIPADMQFCPNGAPPCYRAMNGESVIAAEDKIRLKIVGTRV 962
Query: 119 DVTEI 123
D T I
Sbjct: 963 DATGI 967
>gi|403418884|emb|CCM05584.1| predicted protein [Fibroporia radiculosa]
Length = 170
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ IGKG++ +G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGQFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
KMGF A+ G + +F LI DM+ P S+ + I+K+ ++ LKI+GT+VD
Sbjct: 93 TKMGFFADVGPLTVFVSHQLIHPDMKFDPNSNPPSFASEEQI-IEKNTKIRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|255730463|ref|XP_002550156.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132113|gb|EER31671.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 173
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + + I GKG I GT + F V+ + +V++PFKGE++ A
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDSSHIDVGKGRIIPGTGMAEFEVKYRAVVWKPFKGEVVDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
V VNKMGF A+ G + +F LIP DM+ + + PSY+++D I+K + LKI+
Sbjct: 91 VHTVNKMGFFADVGPLSVFVSTHLIPSDMKYNSSANPPSYSSNDE--HIEKGSRVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|358054534|dbj|GAA99460.1| hypothetical protein E5Q_06159 [Mixia osmundae IAM 14324]
Length = 207
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 78/132 (59%), Gaps = 9/132 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAES-----IGKGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
+DV GTCSG HG+ VA+ S +G I+ GT + F V +VFRPFKGE+L
Sbjct: 31 FEDVSGTCSGLHGYIVAVLVVGSGEGPFKPQGTIQPGTGMAEFEVPYLAVVFRPFKGEVL 90
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYT-TSDGSVKIQKDCELWL 111
VT VNKMGF E GA+ +F L+P DM+ P ++ D S+ IQKD + +
Sbjct: 91 DGVVTTVNKMGFFVEVGALTVFVSAHLMPGDMKFSEDSPPRFSRMGDDSMAIQKDVVVRV 150
Query: 112 KIIGTQVDVTEI 123
KI+GT++D TEI
Sbjct: 151 KIVGTRIDATEI 162
>gi|302837432|ref|XP_002950275.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
gi|300264280|gb|EFJ48476.1| hypothetical protein VOLCADRAFT_74564 [Volvox carteri f.
nagariensis]
Length = 176
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 80/127 (62%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIR-NGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+ + EGTC+G++G+ VA+T + IG+G IR + + TF V CIV RP+K E+L A V
Sbjct: 31 IAETEGTCTGKYGYVVAVTKVDDIGRGRIRQDQSGFATFDVTYGCIVCRPYKKEVLDAVV 90
Query: 60 TMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
T VNKMGF A+AG +Q+F LIP++ E + S+ + D + IQ + ++I+G
Sbjct: 91 TSVNKMGFFAQAGPLQLFVTQHLIPEEFEFDSSGDSSWVSVDQTTHIQPGTHVRVRILGI 150
Query: 117 QVDVTEI 123
+ D TE+
Sbjct: 151 KYDPTEV 157
>gi|58394731|ref|XP_320916.2| AGAP002121-PA [Anopheles gambiae str. PEST]
gi|55233251|gb|EAA00949.2| AGAP002121-PA [Anopheles gambiae str. PEST]
Length = 173
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T + IG G I+ G V + V+ + IVFRPFKGE+L A V V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDDIGSGTIQPGQGFVVYPVKYKAIVFRPFKGEVLDATVKQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP DM+ G P Y +G I + ++ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPADMQFCPNGAPPCYRAINGESVIAAEDKIRLKIVGTRV 152
Query: 119 DVTEI 123
D T I
Sbjct: 153 DATGI 157
>gi|302687740|ref|XP_003033550.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
gi|300107244|gb|EFI98647.1| hypothetical protein SCHCODRAFT_234509 [Schizophyllum commune H4-8]
Length = 167
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSGR G+ +A+ IGKG++ +G+ F+ R + IVF+PFKGE++ +V
Sbjct: 33 DVEGTCSGRFGYIIAVVSILDIGKGMVMSGSGQAEFITRYRAIVFKPFKGEVVDG---VV 89
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
N MGF A+ G + +F LI DM+ P S+ ++ I+K+ ++ LKI+GT+VD
Sbjct: 90 NNMGFFADVGPLTVFVSHQLIHPDMKFDPNSNPPSFASEDAI-IEKNTKVRLKIVGTRVD 148
Query: 120 VTEI 123
TEI
Sbjct: 149 ATEI 152
>gi|440898152|gb|ELR49707.1| DNA-directed RNA polymerase II subunit RPB7, partial [Bos grunniens
mutus]
Length = 163
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 6/125 (4%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 29 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 88
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + I E+ LKI+GT+V
Sbjct: 89 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIHD--EIRLKIVGTRV 146
Query: 119 DVTEI 123
D +I
Sbjct: 147 DKNDI 151
>gi|448117713|ref|XP_004203323.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|448120153|ref|XP_004203906.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384191|emb|CCE78895.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
gi|359384774|emb|CCE78309.1| Piso0_000929 [Millerozyma farinosa CBS 7064]
Length = 173
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + +I GKG I GT + F V+ + +V++PFKGE++
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDCMNIDVGKGTIIPGTGMAEFEVKYRAVVWKPFKGEVVDGV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y +SD + I+K ++ LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYMSSDEN--IEKGSKVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|240848959|ref|NP_001155524.1| DNA-directed RNA polymerase II subunit RPB7 [Acyrthosiphon pisum]
gi|239792200|dbj|BAH72468.1| ACYPI003367 [Acyrthosiphon pisum]
Length = 172
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 80/126 (63%), Gaps = 4/126 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
++VEGTC+G++GF +A+T ++IG GLI G V + V+ + IVFRPFKGE+L A VT
Sbjct: 32 REVEGTCTGKYGFVIAVTHIDNIGCGLILPGQGFVVYTVKYKAIVFRPFKGEVLEAVVTQ 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+NK+G AE G + F IP +++ P Y + + ++ IQ + + LKI+GT+
Sbjct: 92 LNKVGMFAEIGPLSCFISHHSIPSELQFCPNTSPPCYKSKEENIAIQPEDTIRLKIVGTR 151
Query: 118 VDVTEI 123
VD + I
Sbjct: 152 VDASGI 157
>gi|303276905|ref|XP_003057746.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460403|gb|EEH57697.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 174
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRN-GTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
++VEG+C+GRHG+ V +T I +G+I + GT F V+ I FRPFK E+L V
Sbjct: 32 QEVEGSCTGRHGYIVMVTNIVHISEGMITDDGTARAKFHVKYSAIAFRPFKNEVLDCVVV 91
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYT-TSDGSVKIQKDCELWLKIIGT 116
V K GF AEAG +++F L+P++M ++ D +Y +D S +I KD E+ +K++G
Sbjct: 92 QVTKFGFFAEAGPLKLFVSNQLVPEEMVFESVDENAYVDKTDISHRIVKDIEVRVKVVGL 151
Query: 117 QVDVTEI 123
++D EI
Sbjct: 152 RIDHNEI 158
>gi|68475103|ref|XP_718437.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|68475644|ref|XP_718170.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|241948197|ref|XP_002416821.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative;
DNA-directed RNA polymerase II core complex subunit,
putative [Candida dubliniensis CD36]
gi|12655858|gb|AAK00627.1| RNA polymerase II subunit 7 [Candida albicans]
gi|46439926|gb|EAK99238.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|46440202|gb|EAK99511.1| likely RNA Pol II core complex subunit [Candida albicans SC5314]
gi|223640159|emb|CAX44406.1| DNA-directed RNA polymerase II 19 kda polypeptide, putative
[Candida dubliniensis CD36]
Length = 173
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 82/129 (63%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + + +I GKG I T + F V+ + +V++PFKGE++ A
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDSMNIDVGKGRIIPSTGMAEFEVKYRAVVWKPFKGEVVDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y + D + I+K + LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDEN--IEKGSRVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|332374930|gb|AEE62606.1| unknown [Dendroctonus ponderosae]
Length = 173
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T + IG GLI G V + V+ + IVFRPFKGE+L A V V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDHIGAGLILPGQGFVVYPVKYKAIVFRPFKGEVLDAVVRQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPS-YTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G AE G + F IP +ME P Y T + + I + E+ LKI+GT+V
Sbjct: 93 NKVGMFAEIGPLSCFISHHSIPAEMEFCPNVNPQCYKTKEEDIVIHAEGEIRLKIVGTRV 152
Query: 119 DVTEI 123
D + I
Sbjct: 153 DASGI 157
>gi|238879354|gb|EEQ42992.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Candida albicans
WO-1]
Length = 173
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + + +I GKG I T V F V+ + +V++PFKGE++ A
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDSMNIDVGKGRIIPSTGKVEFEVKYRAVVWKPFKGEVVDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y + D + I+K + LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDEN--IEKGSRVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|190346607|gb|EDK38733.2| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + +I GKG I G+ + F V+ + +V++PFKGE++ A
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDCMNIDVGKGKIIPGSGMAEFEVKYRAVVWKPFKGEVVDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y + D + I+K + LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDEN--IEKGSRVRLKIV 148
Query: 115 GTQVDVTEI 123
GT++DV EI
Sbjct: 149 GTRMDVNEI 157
>gi|146418273|ref|XP_001485102.1| hypothetical protein PGUG_02831 [Meyerozyma guilliermondii ATCC
6260]
Length = 173
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + +I GKG I G+ + F V+ + +V++PFKGE++ A
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDCMNIDVGKGKIIPGSGMAEFEVKYRAVVWKPFKGEVVDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y + D + I+K + LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDEN--IEKGSRVRLKIV 148
Query: 115 GTQVDVTEI 123
GT++DV EI
Sbjct: 149 GTRMDVNEI 157
>gi|126273978|ref|XP_001387367.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
gi|126213237|gb|EAZ63344.1| RNA polymerase II subunit [Scheffersomyces stipitis CBS 6054]
Length = 173
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 82/129 (63%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + +I GKG I G+ + F V+ + +V++PFKGE++ A
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDCMNIDVGKGRIIPGSGMAEFEVKYRAVVWKPFKGEVVDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y + D + I+K + LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDEN--IEKGSRVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|343426584|emb|CBQ70113.1| probable DNA-directed RNA polymerase II chain Rpb7 [Sporisorium
reilianum SRZ2]
Length = 170
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTC+G+HG+ + + G +G+G + G+ L F Q +V +PFKGE++ A +T V
Sbjct: 33 DVEGTCTGKHGYIIKVIGMVDVGQGRVIPGSGLAEFNSTYQAVVLKPFKGEVMDAKITNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF AE G + IF LIP + + Q P S S ++ K ++ +KI+GT+VD
Sbjct: 93 NKMGFFAEVGPLNIFVSSHLIPIEYKFQPESNPPEFVS-ASDRLVKGRKVRIKIVGTRVD 151
Query: 120 VTEI 123
EI
Sbjct: 152 ANEI 155
>gi|393221726|gb|EJD07210.1| hypothetical protein FOMMEDRAFT_137613 [Fomitiporia mediterranea
MF3/22]
Length = 170
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ IGKG++ G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGQFGYIIAVVSVLDIGKGMVLPGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF AE G + +F LI DM+ P SD + I+K+ ++ LKI+GT+VD
Sbjct: 93 NKMGFFAEVGPLTVFVSHQLIHPDMKFDPNSNPPSFASDEQI-IEKNTKVRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|71022503|ref|XP_761481.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
gi|46101350|gb|EAK86583.1| hypothetical protein UM05334.1 [Ustilago maydis 521]
Length = 170
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTC+G+HG+ + + G +G+G + G+ L F Q +V +PFKGE++ A +T V
Sbjct: 33 DVEGTCTGKHGYIIKVIGLVDVGQGKVIPGSGLAEFNSTYQAVVLKPFKGEVMDAKITNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF AE G + IF LIP + + Q P S S ++ K ++ +KI+GT+VD
Sbjct: 93 NKMGFFAEVGPLNIFVSSHLIPIEYKFQPESNPPEFVS-ASDRLVKGRKVRIKIVGTRVD 151
Query: 120 VTEI 123
EI
Sbjct: 152 ANEI 155
>gi|392564925|gb|EIW58102.1| hypothetical protein TRAVEDRAFT_167523 [Trametes versicolor
FP-101664 SS1]
Length = 170
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG G+ +A+ IGKG++ G+ F+ R + IVF+PFKG+++ V V
Sbjct: 33 DVEGTCSGEFGYIIAVVSILDIGKGMVLAGSGQAEFVTRYRAIVFKPFKGQVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
KMGF A+ G + +F LI DM+ P S+ + I+K+ + LKI+GT+VD
Sbjct: 93 TKMGFFADVGPLTVFVSHQLIHPDMKFDPNSNPPSFASEEQI-IEKNTRVRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|301099953|ref|XP_002899067.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262104379|gb|EEY62431.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 177
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 84/130 (64%), Gaps = 6/130 (4%)
Query: 1 MKDVEGTCSGRHGFAVAITGA--ESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+++VEGT G++G+ + +T E IGKG+I++ + V F +R + I+FRPFK ++L A
Sbjct: 31 IEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKII 114
VT+VN++GF A+ G +Q+F +P D+ + ++ + D V+I+K C + LKI+
Sbjct: 91 VTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHESNAWISDDREVEIRKGCGVRLKIM 150
Query: 115 GTQVDVTEIE 124
G VDVTEI
Sbjct: 151 GVSVDVTEIN 160
>gi|50426557|ref|XP_461875.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
gi|49657545|emb|CAG90338.1| DEHA2G07546p [Debaryomyces hansenii CBS767]
Length = 173
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 82/129 (63%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + +I GKG + G+ + F V+ + +V++PFKGE++ A
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDCMNIDVGKGRVIPGSGVAEFEVKYRAVVWKPFKGEVVDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y + D + I+K + LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDEN--IEKGSRVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|448519863|ref|XP_003868179.1| Rpb7 protein [Candida orthopsilosis Co 90-125]
gi|354544173|emb|CCE40896.1| hypothetical protein CPAR2_109340 [Candida parapsilosis]
gi|380352518|emb|CCG22744.1| Rpb7 protein [Candida orthopsilosis]
Length = 173
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + + +I GKG I T + F V+ + +V++PFKGE++
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDSMNIDVGKGRIIPTTGMAEFEVKYRAVVWKPFKGEVVDGV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y++ D + I+K ++ LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYSSPDEN--IEKGSKVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|149244114|ref|XP_001526600.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448994|gb|EDK43250.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 173
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + + +I GKG I + + F V+ + +V++PFKGE++
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDSMNIDVGKGRIIPSSGMAEFEVKYRAVVWKPFKGEVVDGV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y++ D + I+K ++ LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYSSPDEN--IEKGSKVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|393248136|gb|EJD55643.1| hypothetical protein AURDEDRAFT_78882 [Auricularia delicata
TFB-10046 SS5]
Length = 170
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ IG+G++ G+ F+ R + IVF+PFKGE++ V+ V
Sbjct: 33 DVEGTCSGQFGYIIAVIDLVDIGRGIVLPGSGQAEFVTRYRAIVFKPFKGEVVDGVVSSV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
KMGF A+ G + +F LI DM P S+ + I+K+ + LKI+GT+VD
Sbjct: 93 LKMGFFADVGPLSVFVSAQLIHPDMRFDPNSNPPSFASEEQI-IEKNTHVRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|348674301|gb|EGZ14120.1| hypothetical protein PHYSODRAFT_303395 [Phytophthora sojae]
Length = 168
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 84/129 (65%), Gaps = 6/129 (4%)
Query: 1 MKDVEGTCSGRHGFAVAITGA--ESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+++VEGT G++G+ + +T E IGKG+I++ + V F +R + I+FRPFK ++L A
Sbjct: 31 IEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGFVCFNIRYRAILFRPFKNQVLDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKII 114
VT+VN++GF A+ G +Q+F +P D+ + ++ + D V+I+K C + LKI+
Sbjct: 91 VTVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHESNAWISDDREVEIRKGCGVRLKIM 150
Query: 115 GTQVDVTEI 123
G VDVTEI
Sbjct: 151 GVSVDVTEI 159
>gi|390596943|gb|EIN06344.1| hypothetical protein PUNSTDRAFT_73661 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 186
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 9/130 (6%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG++G+ +++ IG+G I G+ F+ R + IVF+PFKGE++ V V
Sbjct: 42 DVEGTCSGKYGYIISVVTLMDIGRGTILPGSGQAEFVARYRAIVFKPFKGEVVDGIVNNV 101
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVK-----IQKDCELWLKI 113
NKMGF E G V F LI DM+ + + PS+ + D + I+K + LKI
Sbjct: 102 NKMGFFCEVGPVTCFVSQQLIHPDMKFDPSSNTPSFASEDQACTTLPAVIEKGTHVRLKI 161
Query: 114 IGTQVDVTEI 123
+GT+VD TEI
Sbjct: 162 VGTRVDATEI 171
>gi|344234578|gb|EGV66446.1| hypothetical protein CANTEDRAFT_112179 [Candida tenuis ATCC 10573]
Length = 173
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 82/129 (63%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + +I GKG I + + F V+ + +V++PFKGE++ A
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDCMNIDVGKGRIIPSSGMAEFEVKYRAVVWKPFKGEVVDAI 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y + D + I+K ++ LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMQFNPSANPPAYVSQDEN--IEKGSKVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|344304448|gb|EGW34680.1| RNA polymerase II subunit [Spathaspora passalidarum NRRL Y-27907]
Length = 173
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 81/129 (62%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + +I GKG I G+ + F V+ + +V++PFKGE++
Sbjct: 31 LSDVEGTCTGQFGYIVCVLDCMNIDVGKGRIIPGSGMAEFEVKYRAVVWKPFKGEVVDGV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F LIP DM+ + + P+Y + D + I+K + LKI+
Sbjct: 91 VTTVNKMGFFADVGPLSVFVSTHLIPSDMKFNPSANPPAYVSPDEN--IEKGSRVRLKIV 148
Query: 115 GTQVDVTEI 123
GT+ DV EI
Sbjct: 149 GTRTDVNEI 157
>gi|170106467|ref|XP_001884445.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640791|gb|EDR05055.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 170
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ IGKG++ +G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGQFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF A+ G + +F LI DM P SD + I+K+ + LKI+GT+VD
Sbjct: 93 NKMGFFADVGPLTVFVSHQLIHPDMRFDPNSNPPSFASDEQI-IEKNTRVRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|196007472|ref|XP_002113602.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
gi|190584006|gb|EDV24076.1| hypothetical protein TRIADDRAFT_50378 [Trichoplax adhaerens]
Length = 172
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTCSG+HGF +A+T + +G G I + V + VR + IVF+PF GE++ VT
Sbjct: 31 FSEVEGTCSGKHGFVIAVTIIDKVGVGKILPNSGFVVYPVRYKAIVFKPFPGEVVDGIVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
+NK+G E G + F IP DM G+ P + T D + +Q E+ LKI+GT
Sbjct: 91 QLNKVGLFVEVGPLTCFISKYSIPRDMFFDPNGNPPCFRTEDEDMIVQTGDEVRLKIVGT 150
Query: 117 QVDVTEI 123
+VDV +I
Sbjct: 151 RVDVKDI 157
>gi|169846764|ref|XP_001830096.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
gi|116508866|gb|EAU91761.1| DNA-directed RNA polymerase II subunit [Coprinopsis cinerea
okayama7#130]
Length = 170
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
DVEGTCSG+ G+ +A+ IGKG++ +G+ F+ R + IVF+PFKGE++ V
Sbjct: 32 NDVEGTCSGQFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVFKPFKGEVVDGVVNN 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNKMGF A+ G + +F LI DM+ P S+ + I+K+ ++ LKI+GT+V
Sbjct: 92 VNKMGFFADVGPLSVFVSHQLIHPDMKFDPNSNPPSFASEDQI-IEKNTKVRLKIVGTRV 150
Query: 119 DVTEI 123
D TEI
Sbjct: 151 DATEI 155
>gi|430814255|emb|CCJ28493.1| unnamed protein product [Pneumocystis jirovecii]
Length = 150
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAE--SIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTCSG +G+ + + + IGKG I G F V + +V+RPF+GE+L A
Sbjct: 10 LSDVEGTCSGNYGYIICVLDSNKIDIGKGRIVPGKGEAEFEVGYKAVVWRPFRGEVLDAI 69
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
V+ VNKMGF A+ G IF LIP D++ T + PSY + D V +K ++ LKI+
Sbjct: 70 VSTVNKMGFFADVGPFSIFVSSHLIPSDLKFDPTSNPPSYASEDQLV--EKGAKVRLKIV 127
Query: 115 GTQVDVTEI 123
GT+ D TEI
Sbjct: 128 GTRNDATEI 136
>gi|336368539|gb|EGN96882.1| hypothetical protein SERLA73DRAFT_185108 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381330|gb|EGO22482.1| hypothetical protein SERLADRAFT_473371 [Serpula lacrymans var.
lacrymans S7.9]
Length = 170
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG G+ +A+ IGKG++ +G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGAFGYIIAVVSILDIGKGMVLSGSGQAEFITRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF AE G + +F LI DM+ P S+ + I+K+ + LKI+GT+VD
Sbjct: 93 NKMGFFAEVGPLTVFVSHQLIHPDMKFDPNSNPPSFASEDQI-IEKNTRVRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|325185644|emb|CCA20126.1| DNAdirected RNA polymerase II 19 kDa polypeptide pu [Albugo
laibachii Nc14]
Length = 179
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 84/130 (64%), Gaps = 6/130 (4%)
Query: 1 MKDVEGTCSGRHGFAVAITGA--ESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+++VEGT G++G+ + +T E IGKG+I++ + V F +R + I+FRPFK E+L A
Sbjct: 31 IEEVEGTSMGKYGYVITVTEVRDEDIGKGVIQDNSGYVCFNIRYRAILFRPFKNEVLDAV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKII 114
V++VN++GF A+ G +Q+F +P D+ + ++ + D V+I+K C + L+I+
Sbjct: 91 VSVVNQLGFFADVGPLQVFVSRHAMPTDLNNGYDHENNAWISDDREVEIRKGCGVRLRIM 150
Query: 115 GTQVDVTEIE 124
G +DVTEI
Sbjct: 151 GVSIDVTEIN 160
>gi|449548439|gb|EMD39406.1| hypothetical protein CERSUDRAFT_113038 [Ceriporiopsis subvermispora
B]
Length = 170
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ IGKG++ G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGQFGYIIAVVSILDIGKGMVLPGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF A+ G + +F LI D++ P SD + I+K+ + LKI+GT+VD
Sbjct: 93 NKMGFFADVGPLTVFVSHQLIHPDLKFDPNSNPPSFASDDQI-IEKNTRIRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|388856504|emb|CCF49810.1| probable DNA-directed RNA polymerase II chain Rpb7 [Ustilago
hordei]
Length = 170
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTC+G++G+ + + G +G+G + G+ L F Q +V +PFKGE++ A +T V
Sbjct: 33 DVEGTCTGKYGYIIKVVGMIDVGQGKVIPGSGLAEFNSTYQAVVLKPFKGEVMDAKITNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF AE G + IF LIP + Q P S S ++ K ++ +KI+GT+VD
Sbjct: 93 NKMGFFAEVGPLNIFVSSHLIPIEYRFQPESNPPEFVS-ASDRLVKGRKVRIKIVGTRVD 151
Query: 120 VTEI 123
EI
Sbjct: 152 ANEI 155
>gi|409081234|gb|EKM81593.1| hypothetical protein AGABI1DRAFT_111877 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196468|gb|EKV46396.1| hypothetical protein AGABI2DRAFT_193120 [Agaricus bisporus var.
bisporus H97]
Length = 170
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ IGKG++ +G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGQFGYIIAVVSILDIGKGMVLSGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF A+AG + +F LI +M P S+ + I+K+ + LKI+GT+VD
Sbjct: 93 NKMGFFADAGPLTVFISHQLIHPNMRFDPNSNPPSFASEDQI-IEKNTRVRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|409045255|gb|EKM54736.1| hypothetical protein PHACADRAFT_175251 [Phanerochaete carnosa
HHB-10118-sp]
Length = 170
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ +IG+G++ G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGQFGYIIAVVTILNIGEGMVLPGSGQAEFITRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF A+ G + +F LI DM+ P SD + I+K+ ++ LKI+GT+VD
Sbjct: 93 NKMGFFADVGPLTVFVSHQLIHPDMKFDPNSNPPSFASDEQI-IEKNTKVRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|332249762|ref|XP_003274027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Nomascus
leucogenys]
Length = 134
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
Query: 11 RHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAE 70
++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT VNK+G E
Sbjct: 3 KYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTE 62
Query: 71 AGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEI 123
G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+VD +I
Sbjct: 63 IGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDI 119
>gi|162312460|ref|XP_001713072.1| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe 972h-]
gi|3334317|sp|O14459.1|RPB7_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb7;
Short=RNA polymerase II subunit B7
gi|256599721|pdb|3H0G|G Chain G, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599733|pdb|3H0G|S Chain S, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529241|dbj|BAA22802.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2529245|dbj|BAA22804.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|2708528|gb|AAB92516.1| Rpb7 [Schizosaccharomyces pombe]
gi|4091821|gb|AAC99317.1| RNA polymerase II subunit Rpb7 [Schizosaccharomyces pombe]
gi|159883968|emb|CAA20136.2| DNA-directed RNA polymerase complex II subunit Rpb7
[Schizosaccharomyces pombe]
Length = 172
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIG--KGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTCSG++G+ + + + +I KG + G F V+ + +++RPF+GE++ A
Sbjct: 32 LADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAI 91
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A G + +F L+P DM+ T + P+Y+ D I+K + LKI+
Sbjct: 92 VTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQV--IEKGSNVRLKIV 149
Query: 115 GTQVDVTEI 123
GT+ D TEI
Sbjct: 150 GTRTDATEI 158
>gi|354469798|ref|XP_003497310.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cricetulus griseus]
Length = 172
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC G++ F +A+T ++IG G I+ G V+ + IVF+PFKGE++ A VT V
Sbjct: 33 EVEGTCKGKYDFVIAVTTIDNIGAGEIQPGQGFDLHTVKFKAIVFQPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMGEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>gi|389739088|gb|EIM80282.1| hypothetical protein STEHIDRAFT_105350 [Stereum hirsutum FP-91666
SS1]
Length = 170
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ IGKG++ G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGQFGYIIAVVSILDIGKGMVLGGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NKMGF A+ G + +F LI DM+ T + PS+ + + I+K+ ++ LKI+GT+V
Sbjct: 93 NKMGFFADVGPLTVFVSHQLIHPDMKFDPTSNPPSFASEEQI--IEKNTKVRLKIVGTRV 150
Query: 119 DVTEI 123
D TEI
Sbjct: 151 DATEI 155
>gi|242210404|ref|XP_002471045.1| predicted protein [Postia placenta Mad-698-R]
gi|220729947|gb|EED83813.1| predicted protein [Postia placenta Mad-698-R]
Length = 170
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ IGKG++ +G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGQFGYIIAVVSILDIGKGMVISGSGQAEFITRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF A+ G + +F LI D++ P S+ + I+K+ ++ LKI+GT+VD
Sbjct: 93 NKMGFFADVGPLTVFVSHQLIHPDLKFDPNSNPPSFASEDQI-IEKNTKVRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|443898054|dbj|GAC75392.1| DNA-directed RNA polymerase subunit E' [Pseudozyma antarctica T-34]
Length = 170
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 6/125 (4%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTC+G++G+ + + G +G+G + G+ L F Q +V +PFKGE++ A +T V
Sbjct: 33 DVEGTCTGKYGYIIKVVGMIDVGQGKVIPGSGLAEFNSTYQAVVLKPFKGEVMDAKITNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQT-GDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NKMGF AE G + IF LIP + + Q + P + ++ + ++ K ++ +KI+GT+V
Sbjct: 93 NKMGFFAEVGPLNIFVSSHLIPIEYKFQPEANPPEFVSA--ADRLVKGRKVRIKIVGTRV 150
Query: 119 DVTEI 123
D EI
Sbjct: 151 DANEI 155
>gi|213403826|ref|XP_002172685.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
gi|212000732|gb|EEB06392.1| DNA-directed RNA polymerase II subunit RPB7 [Schizosaccharomyces
japonicus yFS275]
Length = 172
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIG--KGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTCSG++G+ + + + +I KG + G F V+ + I++RPF+GE++ A
Sbjct: 32 LADVEGTCSGQYGYIICVLDSNTIDIDKGKVIPGQGFAEFEVKYRAILWRPFRGEVVDAV 91
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A+ G + +F L+P DM + P+Y+ D I+K + LKI+
Sbjct: 92 VTTVNKMGFFADVGPLSVFVSSHLVPPDMTFDPAANPPNYSGEDQV--IEKGSNVRLKIV 149
Query: 115 GTQVDVTEI 123
GT+ D TEI
Sbjct: 150 GTRTDATEI 158
>gi|392585942|gb|EIW75280.1| hypothetical protein CONPUDRAFT_132203 [Coniophora puteana
RWD-64-598 SS2]
Length = 170
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG+ G+ +A+ IG+G++ +G+ F+ R + IVF+PFKGE++ V V
Sbjct: 33 DVEGTCSGQFGYIIAVVSILDIGRGMVLSGSGQAEFVTRYRAIVFKPFKGEVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF A+ G + +F LI D++ P SD + I+K+ + +K++GT+VD
Sbjct: 93 NKMGFFADVGPLTVFVSHQLIHPDLKFDPNSNPPSFASDDQI-IEKNTRVRVKLVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|395323800|gb|EJF56256.1| hypothetical protein DICSQDRAFT_175060 [Dichomitus squalens
LYAD-421 SS1]
Length = 170
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSG G+ +A+ IGKG++ G+ F+ R + IVF+PFKG+++ V V
Sbjct: 33 DVEGTCSGEFGYIIAVVSILDIGKGMVMPGSGQAEFVTRYRAIVFKPFKGQVVDGVVNNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMGF A+ G + +F LI +++ P S+ V I+K+ + LKI+GT+VD
Sbjct: 93 NKMGFFADVGPLTVFVSHQLIHPELKFDPNSNPPSFASEDQV-IEKNTRVRLKIVGTRVD 151
Query: 120 VTEI 123
TEI
Sbjct: 152 ATEI 155
>gi|384486857|gb|EIE79037.1| hypothetical protein RO3G_03742 [Rhizopus delemar RA 99-880]
Length = 134
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 17/122 (13%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DVEGTCSGR+G+ V + + KG + G+ L F V Q I+F+PFKGE+L VT V
Sbjct: 12 DVEGTCSGRYGYVVTVVSVSRLEKGKVLPGSGLAEFKVSYQAILFKPFKGEVLDGLVTTV 71
Query: 63 NKMGFLAEAGAVQIFCLIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
NK LIP++ + G+ P Y++ D IQKD + LK++GT+VD T
Sbjct: 72 NK--------------LIPNEFKFDVNGNPPCYSSEDQV--IQKDVRVRLKLVGTRVDAT 115
Query: 122 EI 123
EI
Sbjct: 116 EI 117
>gi|320166538|gb|EFW43437.1| RNA polymerase II core subunit [Capsaspora owczarzaki ATCC 30864]
Length = 176
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 8/129 (6%)
Query: 3 DVEGTCSGRHGFAVAITG--AESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC G GF VAIT E +G+G + G LV++ V+ Q +VFRP KGE++ A VT
Sbjct: 33 EVEGTCDGERGFIVAITSLSEEHLGRGRLMAGKGLVSYHVQYQAVVFRPVKGEVMDAIVT 92
Query: 61 MVNKMGFLAEAGAVQIFCL----IPDDMELQ-TGDLPSYTTSDGSV-KIQKDCELWLKII 114
+VNKMGF AEAG + IF +P + T + P + ++D ++ I ++ L+I
Sbjct: 93 VVNKMGFFAEAGPISIFVSQVGGMPSEYSFDVTSNPPCFKSADMTIGAITVGSQVRLRIA 152
Query: 115 GTQVDVTEI 123
G ++D I
Sbjct: 153 GMRIDAESI 161
>gi|353236768|emb|CCA68756.1| probable DNA-directed RNA polymerase II chain Rpb7 [Piriformospora
indica DSM 11827]
Length = 170
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 75/125 (60%), Gaps = 6/125 (4%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
DV+GTC+G++GF +A+ +G G++ G F R + IVF+PFKGE+L VT V
Sbjct: 33 DVQGTCTGQYGFIIAVLEIIDVGPGIVLPGNGQAEFKTRYKAIVFKPFKGEVLDGVVTNV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
+ GF E G ++ F L+ DM +PS+++ D I+KD ++ LK++GT+V
Sbjct: 93 LRAGFFVEVGPLRCFVSQQLVHPDMRFDANAAVPSFSSQDQV--IEKDTKVRLKVVGTRV 150
Query: 119 DVTEI 123
D TEI
Sbjct: 151 DQTEI 155
>gi|321258118|ref|XP_003193819.1| hypothetical protein CGB_D7770C [Cryptococcus gattii WM276]
gi|317460289|gb|ADV22032.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 172
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEGTCSG+HG+ +++ IG+G I T F R IV +PFKGE++ A V
Sbjct: 32 EDVEGTCSGKHGYIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVAN 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNKMGF A G +Q+F L DM+ P S+ + IQKD ++ ++I+G +V
Sbjct: 92 VNKMGFFAMVGPLQVFVSCHLTHSDMKFDPSVSPPCYRSNDEI-IQKDTKVRIQIVGCRV 150
Query: 119 DVTEI 123
+ ++
Sbjct: 151 EANDM 155
>gi|58266678|ref|XP_570495.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226728|gb|AAW43188.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 172
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEGTCSG+HG+ +++ IG+G I T F R IV +PFKGE++ A V
Sbjct: 32 EDVEGTCSGKHGYIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVVN 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNKMGF A G +Q+F L DM+ P S+ + IQKD ++ ++I+G +V
Sbjct: 92 VNKMGFFAMVGPLQVFVSCHLTHSDMKFDPSVSPPCYRSNDEI-IQKDTKVRIQIVGCRV 150
Query: 119 DVTEI 123
+ ++
Sbjct: 151 EANDM 155
>gi|406866054|gb|EKD19094.1| RNA polymerase Rpb7-like domain-containing protein [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 172
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+GR+ F + I +I +G I G+ L F V + +V+RPFKGE + A VT
Sbjct: 31 LKDVEGTCTGRY-FIITIMDTFNISEGRILPGSGLAEFTVGYRAVVWRPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN++GF A+AG + IF LIP D++ P T++ I+ + +K+IGT+
Sbjct: 90 SVNQVGFFADAGPLPIFVSAHLIPPDIKFDPNATPPQFTNNEDSVIEVGTHVRVKLIGTR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 AEVGEM 155
>gi|339252426|ref|XP_003371436.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella spiralis]
gi|316968324|gb|EFV52617.1| DNA-directed RNA polymerase II subunit RPB7 [Trichinella spiralis]
Length = 172
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEG C G++GF + +TG SIG GL+++G V F ++ Q +V+RP K E++ V V
Sbjct: 33 EVEGQCMGKYGFIITVTGILSIGAGLVQSGCGFVRFPIKYQAVVYRPIKNEVVEGRVENV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLP-SYTTSDGSVKIQKDCELWLKIIGTQV 118
+K+G G + +F IP D+ + P SY D S++I + L LKI+GT+V
Sbjct: 93 SKLGLFCLVGPLTVFISRHCIPHDLIFRPTAQPMSYCNEDESIEITVNMNLRLKILGTRV 152
Query: 119 DVTEI 123
D I
Sbjct: 153 DANNI 157
>gi|260944176|ref|XP_002616386.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
gi|238850035|gb|EEQ39499.1| hypothetical protein CLUG_03627 [Clavispora lusitaniae ATCC 42720]
Length = 141
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 79/126 (62%), Gaps = 8/126 (6%)
Query: 4 VEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
++GTC+G+ G+ V + +I G+G I G+ + F V+ + +V++PFKGE++ A VT
Sbjct: 2 LKGTCTGQFGYIVCVLDCMNIDVGRGRIIPGSGMAEFEVKYRAVVWKPFKGEVVDAVVTT 61
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNKMGF A+ G + +F LI DM+ + + P+Y + D + I+K + LKI+GT+
Sbjct: 62 VNKMGFFADVGPLSVFVSTHLISSDMKFNPSANPPAYVSPDET--IEKGSRVRLKIVGTR 119
Query: 118 VDVTEI 123
DV EI
Sbjct: 120 TDVNEI 125
>gi|328773740|gb|EGF83777.1| hypothetical protein BATDEDRAFT_29094 [Batrachochytrium
dendrobatidis JAM81]
Length = 180
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 78/132 (59%), Gaps = 9/132 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
++VEG CSG+ G+ +++ +GKG++++ T F + + IVF+PFK +++ VT
Sbjct: 31 YEEVEGICSGQFGYIISVVDIVDVGKGVLQSNTGFAQFEILYKAIVFKPFKNQVVDGLVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDG------SVKIQKDCELWL 111
VNK+GF A+ G +Q+F LIP ++ P +G +++++K + L
Sbjct: 91 TVNKIGFWADVGPLQVFVSSHLIPGYLKFDANANPPAYVGEGQEFGEAALRVEKGAVVRL 150
Query: 112 KIIGTQVDVTEI 123
+I+GT+VD TEI
Sbjct: 151 RIVGTRVDATEI 162
>gi|224110118|ref|XP_002198109.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like,
partial [Taeniopygia guttata]
Length = 133
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF +A+T +++G G+I+ G V + VR + IVFRPFKGE++ A VT
Sbjct: 31 FTEVEGTCTGKYGFVIAVTTIDNVGAGVIQPGRGFVLYPVRYKAIVFRPFKGEVVDAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMEL-QTGDLPSYTTSD 98
VNK+G E G + F IP +ME + P Y T D
Sbjct: 91 QVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVD 132
>gi|340992705|gb|EGS23260.1| hypothetical protein CTHT_0009270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 171
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + +AI I +G I G+ L F V + +V+RPFK E++ A VT
Sbjct: 31 VKDVEGTCAGDY-YVIAIMDTFDISEGRILPGSGLAEFTVGYRAVVWRPFKNEVIDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN GF A+AG +++F LIPD+++ P T++ + I++ + +KIIG +
Sbjct: 90 TVNPHGFFAQAGPLRLFVSTHLIPDEIKYDASATPPQFTNNADIVIEQGTHVRVKIIGLR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|320582151|gb|EFW96369.1| RNA polymerase II subunit [Ogataea parapolymorpha DL-1]
Length = 172
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 7/130 (5%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTV-LVTFLVRCQCIVFRPFKGEILGA 57
+ DVEGTC+G+ G+ + + + SI GKG I G F V+ + +V++PFKGE++ A
Sbjct: 31 LTDVEGTCTGQFGYIICVLDSMSIDVGKGKIVPGQQGYAEFEVKYRAVVWKPFKGEVVDA 90
Query: 58 GVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKII 114
V+ VN MGF A+ G + +F LIP DM+ P S+ V I K ++ +KII
Sbjct: 91 IVSSVNNMGFFADVGPLSVFISKHLIPKDMKYTPSHTPPAYISEDQV-IMKGSKVRIKII 149
Query: 115 GTQVDVTEIE 124
GT+ DV I
Sbjct: 150 GTRSDVNSIS 159
>gi|256072766|ref|XP_002572705.1| DNA-directed rna polymerase II 19 kD polypeptide rpb7 [Schistosoma
mansoni]
gi|353231053|emb|CCD77471.1| putative dna-directed rna polymerase II 19 kD polypeptide rpb7
[Schistosoma mansoni]
Length = 194
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
DVEGTCSG++GF +A+T E IG G+I+ V + + + IV+RPFKGE++ A VT
Sbjct: 54 FSDVEGTCSGKYGFIIAVTNIEHIGAGIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVT 113
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDG 99
V K+G AEAG + IF +P +++ + + TT+DG
Sbjct: 114 QVTKVGVFAEAGPLTIFISKYSVPSNIKFEGAE----TTTDG 151
>gi|254574492|ref|XP_002494355.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|238034154|emb|CAY72176.1| RNA polymerase II subunit [Komagataella pastoris GS115]
gi|328353828|emb|CCA40225.1| DNA-directed RNA polymerase II subunit G [Komagataella pastoris CBS
7435]
Length = 171
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTC+G+ G+ V + +I GKG I G+ F V+ + +V++PFKGE++ A
Sbjct: 31 LTDVEGTCTGQFGYIVTVLDGMNIDVGKGRIIPGSGSAEFEVKYRAVVWKPFKGEVVDAI 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
V+ V+ +GF A+ G + +F LIPD++ + P S+ + I K ++ LK++G
Sbjct: 91 VSNVSPIGFFADVGPLNVFVSTRLIPDNLVYNPSNSPPAYMSNDEL-ITKGSKVRLKVVG 149
Query: 116 TQVDVTEI 123
T+ DV EI
Sbjct: 150 TRTDVNEI 157
>gi|408398876|gb|EKJ78002.1| hypothetical protein FPSE_01790 [Fusarium pseudograminearum CS3096]
Length = 172
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + F ++I A I +G I G + F V + +V+RPFKGE + A V
Sbjct: 31 LKDVEGTCAGSY-FIISIMDAFEISEGRILPGLGMAEFTVGYRAVVWRPFKGETVDAVVH 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+N GF A AG +++F LIP+D++ P T++ I+ + +KIIGT+
Sbjct: 90 SINPQGFFAHAGPLRLFVSAHLIPNDVKWDPNATPPQFTNNEDTVIEPQTHVRVKIIGTR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|56757344|gb|AAW26843.1| unknown [Schistosoma japonicum]
Length = 157
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
DVEGTCSG++GF +A+T E IG G+I+ V + + + IV+RPFKGE++ A VT
Sbjct: 31 FSDVEGTCSGKYGFIIAVTNIEHIGAGIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDG 99
V K+G AEAG + IF +P +++ + + TT+DG
Sbjct: 91 QVTKVGVFAEAGPLTIFISKYSVPSNIKFEGAE----TTTDG 128
>gi|406694604|gb|EKC97928.1| hypothetical protein A1Q2_07725 [Trichosporon asahii var. asahii
CBS 8904]
Length = 171
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEGTCSG+HG+ +++ IG+G I T F IV +PFKGE++ V+
Sbjct: 32 EDVEGTCSGKHGYIISVVNVTDIGEGKIMPSTGQARFKCSYTAIVMKPFKGEVVDGKVSN 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNKMGF A G +Q+F L+ DM+ P Y ++D + IQ + ++I+G +
Sbjct: 92 VNKMGFFAHVGPLQVFVSSHLVHADMKFDPNASPPCYRSADET--IQAGSRVRMEIVGCR 149
Query: 118 VDVTEI 123
++ +I
Sbjct: 150 IEANDI 155
>gi|345566807|gb|EGX49749.1| hypothetical protein AOL_s00078g238 [Arthrobotrys oligospora ATCC
24927]
Length = 169
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 76/124 (61%), Gaps = 6/124 (4%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEGTC+GR+ + + + A +I G I G+ L F + + +V+RPFKGE + VT
Sbjct: 31 LTDVEGTCTGRY-YIICVLDAYNISMGKILPGSGLAEFTISYRAVVWRPFKGETVDGVVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
V+K+GF A G + +F LIP D++ T + P ++ ++G V I+K + LK++GT
Sbjct: 90 AVSKLGFFANVGPLPVFVSTHLIPADVKFDPTANPPQFSDNEGQV-IEKGAHVRLKLVGT 148
Query: 117 QVDV 120
+ DV
Sbjct: 149 RSDV 152
>gi|401885038|gb|EJT49169.1| hypothetical protein A1Q1_01650 [Trichosporon asahii var. asahii
CBS 2479]
Length = 171
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 6/126 (4%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEGTCSG+HG+ +++ IG+G I T F IV +PFKGE++ V+
Sbjct: 32 EDVEGTCSGKHGYIISVVNVTDIGEGKIMPSTGQARFKCSYTAIVMKPFKGEVVDGKVSN 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNKMGF A G +Q+F L+ DM+ P Y ++D + IQ + ++I+G +
Sbjct: 92 VNKMGFFAHVGPLQVFVSSHLVHADMKFDPNASPPCYRSADET--IQAGSRVRMEIVGCR 149
Query: 118 VDVTEI 123
++ +I
Sbjct: 150 IEANDI 155
>gi|226468572|emb|CAX69963.1| polymerase (RNA) II (DNA directed) polypeptide G [Schistosoma
japonicum]
Length = 175
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
DVEGTCSG++GF +A+T E IG G+I+ V + + + IV+RPFKGE++ A VT
Sbjct: 31 FSDVEGTCSGKYGFIIAVTNIEHIGAGIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDG 99
V K+G AEAG + IF +P +++ + + TT+DG
Sbjct: 91 QVTKVGVFAEAGPLTIFISKYSVPSNIKFEGAE----TTTDG 128
>gi|56757637|gb|AAW26970.1| SJCHGC02592 protein [Schistosoma japonicum]
Length = 175
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
DVEGTCSG++GF +A+T E IG G+I+ V + + + IV+RPFKGE++ A VT
Sbjct: 31 FSDVEGTCSGKYGFIIAVTNIEHIGAGIIQPNRGFVQYRIVYRAIVYRPFKGEVVDAIVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDG 99
V K+G AEAG + IF +P +++ + + TT+DG
Sbjct: 91 QVTKVGVFAEAGPLTIFISKYSVPSNIKFEGAE----TTTDG 128
>gi|210075719|ref|XP_002143054.1| YALI0D11627p [Yarrowia lipolytica]
gi|199425798|emb|CAR64319.1| YALI0D11627p [Yarrowia lipolytica CLIB122]
Length = 190
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 1 MKDVEGTCSGRHGFAVAITGAE-SIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+ DVEGTC+G G+ + + IGKG + F V + IV+RPFK E++ A V
Sbjct: 51 LADVEGTCTGEFGYILCVLDQPFDIGKGRVVPSNGSAEFTVNYRAIVWRPFKNEVVDAIV 110
Query: 60 TMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIG 115
T VNKMGF + G + +F LIP DM+ + + P+Y + D I+K + LKI+G
Sbjct: 111 TNVNKMGFFGDVGPLSVFVSSHLIPPDMKFNPSANPPAYVSEDQV--IEKGSRVRLKIVG 168
Query: 116 TQVDVTEI 123
+ DV E+
Sbjct: 169 VRADVGEM 176
>gi|367042626|ref|XP_003651693.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
gi|346998955|gb|AEO65357.1| hypothetical protein THITE_2112268 [Thielavia terrestris NRRL 8126]
Length = 167
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 75/126 (59%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + +AI + +G I G+ L F V + +V+RPFKGE++ A
Sbjct: 31 VKDVEGTCAGDY-YIIAIMDTFDVSEGRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQ 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN GF A+AG +++F L+PD+++ P+ T++ + I+ + +KIIG +
Sbjct: 90 TVNPHGFFAQAGPLRLFVSSQLMPDEIQYDASATPAQFTNNADIVIEHGTHVRVKIIGLR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|164657466|ref|XP_001729859.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
gi|159103753|gb|EDP42645.1| hypothetical protein MGL_2845 [Malassezia globosa CBS 7966]
Length = 186
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 22/141 (15%)
Query: 3 DVEGTCSGRH----------------GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIV 46
DVEGTCSG + G+ + + +G+G + GT L F R Q IV
Sbjct: 33 DVEGTCSGVYVRTYKSMRLMLILESQGYIIKVVSVLDVGQGKVMPGTGLAEFRSRYQAIV 92
Query: 47 FRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQT-GDLPSYTTSDGSVK 102
+PF GE++ A +T VNKMGF AE G + IF L+P D + + P +T+ S
Sbjct: 93 LKPFNGEVVDAKITNVNKMGFFAEVGPLSIFVSSHLLPIDYKFHPDSNPPEFTSPTDS-- 150
Query: 103 IQKDCELWLKIIGTQVDVTEI 123
+ K + ++I+GT+VD EI
Sbjct: 151 LVKGRRVRVRIVGTRVDANEI 171
>gi|116207108|ref|XP_001229363.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183444|gb|EAQ90912.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 202
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + +AI + +G I G+ L F V + +V+RPFKGE++ A
Sbjct: 31 VKDVEGTCAGDY-YIIAIMDTFDVSEGRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQ 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN GF A+AG +++F L+PD+++ P+ T++ + I++ + +KIIG +
Sbjct: 90 TVNPHGFFAQAGPLRLFVSSHLMPDEIQYDASATPAQFTNNADIVIEQGTHVRVKIIGLR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|367020616|ref|XP_003659593.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
gi|347006860|gb|AEO54348.1| hypothetical protein MYCTH_2123230 [Myceliophthora thermophila ATCC
42464]
Length = 171
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + +AI + +G I G+ L F V + +V+RPFKGE++ A
Sbjct: 31 VKDVEGTCAGDY-YIIAIMDTFDVSEGRILPGSGLAEFTVGYRAVVWRPFKGEVIDAITQ 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN GF A+AG +++F L+PD+++ P+ T++ + I++ + ++IIG +
Sbjct: 90 TVNPHGFFAQAGPLRLFVSSHLMPDEIQYDASATPAQFTNNADIVIEQGTHVRVRIIGLR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|322697943|gb|EFY89717.1| putative DNA-directed RNA polymerase II chain Rpb7 [Metarhizium
acridum CQMa 102]
Length = 174
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + ++I I +G I G L F V + +V+RPFKGE + A V
Sbjct: 31 LKDVEGTCAGSY-YIISIMDTFDISEGRILPGNGLAEFTVGYRAVVWRPFKGETVDAVVY 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+N GF A+AG +++F LIP D++ P T++ I+ + +KIIGT+
Sbjct: 90 SINPQGFFAQAGPLRLFVSAHLIPSDIKWDPNATPPQFTNNEDTVIEPGTHVRVKIIGTR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|340517390|gb|EGR47634.1| predicted protein [Trichoderma reesei QM6a]
Length = 170
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + ++I I +G I G L F V + +V+RPFKGE + A V
Sbjct: 31 LKDVEGTCAGSY-YIISIMDTFDISEGKILPGNGLAEFTVGYRAVVWRPFKGETVDAVVY 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+N GF A+AG +++F LIP D++ P T++ I+ + +KIIGT+
Sbjct: 90 SINPQGFFAQAGPLRLFVSAHLIPSDIKWDPNATPPQFTNNEDTVIEPGTHVRVKIIGTR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|358388804|gb|EHK26397.1| hypothetical protein TRIVIDRAFT_86417 [Trichoderma virens Gv29-8]
Length = 171
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + ++I I +G I G L F V + +V+RPFKGE + A V
Sbjct: 31 LKDVEGTCAGSY-YIISIMDTFDISEGRILPGNGLAEFTVGYRAVVWRPFKGETVDAVVY 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+N GF A+AG +++F LIP D++ P T++ I+ + +KIIGT+
Sbjct: 90 SINPQGFFAQAGPLRLFVSAHLIPSDIKWDPNATPPQFTNNEDTVIEPGTHVRVKIIGTR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|156050367|ref|XP_001591145.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980]
gi|154692171|gb|EDN91909.1| hypothetical protein SS1G_07770 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 167
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + + I +I +G I G+ L F V + +V+RPFKGE + A VT
Sbjct: 31 LKDVEGTCTGLY-YIITIMDTFNISEGRILPGSGLAEFTVGYRAVVWRPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN +GF A+AG + +F LIP D++ P T++ I+ + +KIIGT+
Sbjct: 90 SVNAVGFFADAGPLPLFVSAHLIPRDIKFDANATPPQFTNNEDSVIEPGTHVRVKIIGTR 149
Query: 118 VDV 120
+V
Sbjct: 150 PEV 152
>gi|154295091|ref|XP_001547983.1| hypothetical protein BC1G_13674 [Botryotinia fuckeliana B05.10]
gi|347831716|emb|CCD47413.1| similar to DNA-directed RNA polymerase II subunit rpb7 [Botryotinia
fuckeliana]
Length = 172
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + + I +I +G I G+ L F V + +V+RPFKGE + A VT
Sbjct: 31 LKDVEGTCTGLY-YIITIMDTFNISEGRILPGSGLAEFTVGYRAVVWRPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN +GF A+AG + +F LIP D++ P T++ I+ + +KIIGT+
Sbjct: 90 SVNAVGFFADAGPLPLFVSAHLIPRDIKFDANATPPQFTNNEDSVIEPGTHVRVKIIGTR 149
Query: 118 VDV 120
+V
Sbjct: 150 PEV 152
>gi|452819737|gb|EME26790.1| DNA-directed RNA polymerase II subunit G [Galdieria sulphuraria]
Length = 173
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGA-ESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
M +VEGT SGR GF V++ + + KG++R G + ++ + +VFRPFKGE+L A V
Sbjct: 32 MDEVEGTVSGRFGFVVSVLEVLQPLPKGILREGFGFAVYPLKYKALVFRPFKGEVLDAVV 91
Query: 60 TMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
T V + G A+ G + IF IP DM + + + +IQ+D + L++ G
Sbjct: 92 TNVTRHGIFAQVGPLTIFVSRHQIPSDMTHDEETASYISVVEKAERIQRDSAIRLRVNGI 151
Query: 117 QVDVT 121
++D +
Sbjct: 152 KIDAS 156
>gi|400601274|gb|EJP68917.1| RNA polymerase Rpb7-like domain-containing protein [Beauveria
bassiana ARSEF 2860]
Length = 219
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + ++I I +G I L F V + +V+RPFKGE + A V
Sbjct: 31 LKDVEGTCAGSY-YIISIMDTFDISEGKILPSNGLAEFTVGYRAVVWRPFKGETVDAVVY 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+N GF A+AG +++F LIP D + P T++ I+ + +KIIGT+
Sbjct: 90 SINPQGFFAQAGPLRLFVSAHLIPSDTKWDPNATPPQFTNNEDTVIEPSTHVRVKIIGTR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|296423748|ref|XP_002841415.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637653|emb|CAZ85606.1| unnamed protein product [Tuber melanosporum]
Length = 180
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEG+C+GR+ F + + E+I G I G F + + +V+RPFKGE + V+
Sbjct: 32 EDVEGSCTGRY-FIICVIEYENITLGRIIPGKGDAEFTITYKAVVWRPFKGETVDGVVSS 90
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNKMGF AE G + +F LIP D++ P + +G I K + +K++GT+
Sbjct: 91 VNKMGFFAEVGPLTVFVSSHLIPRDIKFDPTSNPPQFSDNGDQIINKGAHIRIKLMGTRS 150
Query: 119 DVTEIE 124
DV ++
Sbjct: 151 DVGKMH 156
>gi|310790921|gb|EFQ26454.1| RNA polymerase Rpb7-like domain-containing protein [Glomerella
graminicola M1.001]
gi|380484883|emb|CCF39716.1| DNA-directed RNA polymerase II subunit RPB7 [Colletotrichum
higginsianum]
gi|429860547|gb|ELA35279.1| RNA polymerase ii subunit 7 [Colletotrichum gloeosporioides Nara
gc5]
Length = 171
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + ++I I +G I G+ L F V + +V+RPFKGE + A V
Sbjct: 31 LKDVEGTCAGSY-YIISIMDTFDISEGRILPGSGLAEFTVGYRAVVWRPFKGETVDAVVY 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN GF A+AG +++F LIP +++ P T++ I+ + +K+IGT+
Sbjct: 90 SVNHQGFFAQAGPLRLFVSAHLIPSEIKWDPNATPPQFTNNEDTIIEPGTHVRVKVIGTR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|403220608|dbj|BAM38741.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 180
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 4 VEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
VEG C+ ++G+ V + G +++GT ++ V+ Q IVF+PFK E+L A VT VN
Sbjct: 34 VEGHCTAKYGYVVCVIRIVHNDMGRVQDGTAMIVVNVKYQAIVFKPFKDEVLDAIVTDVN 93
Query: 64 KMGFLAEAGAVQIF----CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
K+GF A+AG ++ F + P+ + G P YT DG++ I+ E+ +++ G + D
Sbjct: 94 KLGFFAQAGPLKAFVSRNSIHPNFVYDNDGAYPCYT--DGTINIRAQSEVRMRLQGIKYD 151
>gi|358395852|gb|EHK45239.1| hypothetical protein TRIATDRAFT_299936 [Trichoderma atroviride IMI
206040]
Length = 171
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + ++I I +G I L F V + +V+RPFKGE + A V
Sbjct: 31 LKDVEGTCAGSY-YIISIMDTFDISEGRILPSNGLAEFTVGYRAVVWRPFKGETVDAVVY 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+N GF A+AG +++F LIP D++ P T++ I+ + +KIIGT+
Sbjct: 90 SINPQGFFAQAGPLRLFVSAHLIPSDIKWDPNATPPQFTNNEDTVIEPGTHVRVKIIGTR 149
Query: 118 VDVTEI 123
+V E+
Sbjct: 150 TEVGEM 155
>gi|392575439|gb|EIW68572.1| hypothetical protein TREMEDRAFT_71846 [Tremella mesenterica DSM
1558]
Length = 172
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEGTCSG++G+ +++ SIG+G + GT F IV +PFKGE++ V
Sbjct: 32 EDVEGTCSGKYGYIISVITITSIGEGKVLPGTGQARFKTTYTAIVMKPFKGEVVDGQVVN 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNKMGF A G +Q+F L+ DM+ P Y ++D IQKD ++ ++I+G +
Sbjct: 92 VNKMGFFAMVGPLQVFVSSHLVHADMKFDPNASPPCYRSADEV--IQKDSKVRMQIVGCR 149
Query: 118 VDVTEI 123
++ +I
Sbjct: 150 IEANDI 155
>gi|429328615|gb|AFZ80375.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Babesia
equi]
Length = 175
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 4 VEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
VEG C+ ++G+ V + G +++GT ++ V+ Q IVF+PFK E+L A VT VN
Sbjct: 34 VEGHCTAKYGYVVCVIRIVHNEIGRVQDGTAMIVVNVKYQAIVFKPFKDEVLDAIVTDVN 93
Query: 64 KMGFLAEAGAVQIF----CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
K+GF A+AG +++F + P+ + P Y SDG++ I+ E+ ++I G +
Sbjct: 94 KLGFFAQAGPLKVFVSRTSIDPNFVYDNDAAYPCY--SDGTISIKPQSEVRMRIQGISYE 151
Query: 120 VTEI 123
+ I
Sbjct: 152 NSNI 155
>gi|302414828|ref|XP_003005246.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
gi|261356315|gb|EEY18743.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium
albo-atrum VaMs.102]
Length = 177
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGT +G + + ++I I +G I G+ L F V + +V+RPFKGE + A V
Sbjct: 31 LKDVEGTFAGSY-YVISIMDTFDISEGKILPGSGLAEFNVGYRAVVWRPFKGETVDAVVY 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN GF A+AG +++F LIP +++ P T + I+ + +K+IGT+
Sbjct: 90 SVNHQGFFAQAGPLRLFVSAHLIPSEIKWDPNATPPQFTDNDDTIIEPGTHVRVKVIGTR 149
Query: 118 VDVTEI 123
+V+E+
Sbjct: 150 AEVSEM 155
>gi|395852612|ref|XP_003798829.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Otolemur
garnettii]
Length = 170
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 27/121 (22%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTE 122
NK V+ + PD + IQ+D E+ LKI+GT+VD +
Sbjct: 93 NK---------VRPYIGKPD------------------IVIQQDDEIRLKIVGTRVDKND 125
Query: 123 I 123
I
Sbjct: 126 I 126
>gi|71032221|ref|XP_765752.1| DNA-directed RNA polymerase II subunit Rpb7 [Theileria parva strain
Muguga]
gi|84999556|ref|XP_954499.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305497|emb|CAI73822.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
gi|68352709|gb|EAN33469.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Theileria
parva]
Length = 175
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 4 VEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
VEG C+ ++G+ V + G +++GT ++ V+ Q IVF+PFK E+L A VT VN
Sbjct: 34 VEGHCTNKYGYVVCVIRIVQNDMGRVQDGTAMIVVNVKYQAIVFKPFKDEVLDAIVTDVN 93
Query: 64 KMGFLAEAGAVQIF----CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
K+GF A+AG ++ F + P+ + P Y SDG++ I+ E+ +++ G + D
Sbjct: 94 KLGFFAQAGPLKAFVSRNSIHPNFVYDSDSAYPCY--SDGTISIKPQSEVRMRLQGIKYD 151
Query: 120 VTEI 123
+ +
Sbjct: 152 NSNL 155
>gi|346979502|gb|EGY22954.1| DNA-directed RNA polymerase II subunit RPB7 [Verticillium dahliae
VdLs.17]
Length = 171
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGT +G + + ++I I +G I G+ L F V + +V+RPFKGE + A V
Sbjct: 31 LKDVEGTFAGSY-YVISIMDTFDISEGKILPGSGLAEFNVGYRAVVWRPFKGETVDAVVY 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN GF A+AG +++F LIP +++ P T + I+ + +K+IGT+
Sbjct: 90 SVNHQGFFAQAGPLRLFVSAHLIPSEIKWDPNATPPQFTDNDDTIIEPGTHVRVKVIGTR 149
Query: 118 VDVTEI 123
+V+E+
Sbjct: 150 AEVSEM 155
>gi|46108676|ref|XP_381396.1| hypothetical protein FG01220.1 [Gibberella zeae PH-1]
Length = 248
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 10/132 (7%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEI------ 54
+KDVEGTC+G + F ++I A I +G I G + F V + +V+RPFKGE
Sbjct: 31 LKDVEGTCAGSY-FIISIMDAFEISEGRILPGLGMAEFTVGYRAVVWRPFKGETESDLTQ 89
Query: 55 LGAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWL 111
+ A V +N GF A AG +++F LIP+D++ P T++ I+ + +
Sbjct: 90 VDAVVHSINPQGFFAHAGPLRLFVSAHLIPNDVKWDPNATPPQFTNNEDTVIEPQTHVRV 149
Query: 112 KIIGTQVDVTEI 123
KIIGT+ +V E+
Sbjct: 150 KIIGTRTEVGEM 161
>gi|406604823|emb|CCH43698.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 150
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 6/128 (4%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESI--GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ +VEG+C+G+ G+ + + SI GKG I F V+ + +V++PFKGE++
Sbjct: 10 LNEVEGSCTGKFGYIMCVLDCMSIDIGKGKIIPSDGSAEFEVKYRAVVWKPFKGEVVDGV 69
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
+ V+K+GF + G + +F LIP DM P SD V I+K + LKI+G
Sbjct: 70 CSQVSKLGFFVDVGPLSVFVSTHLIPSDMSFNPSSNPPAYQSDDQV-IEKGSRVRLKIVG 128
Query: 116 TQVDVTEI 123
T+ DV I
Sbjct: 129 TRADVNAI 136
>gi|323456227|gb|EGB12094.1| hypothetical protein AURANDRAFT_59851 [Aureococcus anophagefferens]
Length = 179
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIG--KGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
MK+VEG C GR G+ VA+ + G++ T V+ R I+ RPFK E+L A
Sbjct: 33 MKNVEGKCLGREGYVVAVLDVKDDDVDTGIVDYDTGCVSVNARYSAILLRPFKNEVLDAV 92
Query: 59 VTMVNKMGFLAEAGAVQIF----CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VN++GF EAG + +F + PD E D+ S+ + D V+I+ C + L+++
Sbjct: 93 VTHVNELGFFTEAGPLTVFVSRHAMPPDLQEGYDADVDSWVSDDKEVEIKTKCVVRLRLL 152
Query: 115 GTQVDVTEI 123
G D T+I
Sbjct: 153 GVMCDATQI 161
>gi|134110566|ref|XP_776110.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258778|gb|EAL21463.1| hypothetical protein CNBD1580 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 169
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEGTCSG+HG+ +++ IG+G I T F R IV +PFKGE++ A V
Sbjct: 32 EDVEGTCSGKHGYIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVV- 90
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
MGF A G +Q+F L DM+ P S+ + IQKD ++ ++I+G +V
Sbjct: 91 --NMGFFAMVGPLQVFVSCHLTHSDMKFDPSVSPPCYRSNDEI-IQKDTKVRIQIVGCRV 147
Query: 119 DVTEI 123
+ ++
Sbjct: 148 EANDM 152
>gi|38567178|emb|CAE76471.1| probable DNA-directed RNA polymerase II chain Rpb7 [Neurospora
crassa]
Length = 167
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + +AI A + +G I G L F V+ + +V+RPFKGE++ A V
Sbjct: 31 VKDVEGTCAGDY-YIIAIMDAFDVSEGRILPGNGLAEFTVKYRAVVWRPFKGEVVDAIVF 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+N GF +AG + IF L+P+++ P T++ + I+ + +KI G +
Sbjct: 90 SINPHGFFCQAGPLSIFVSSHLMPEEIHFDPNATPPQFTNNADMVIEPGTHVRVKIGGLR 149
Query: 118 VDVTEI 123
++ E+
Sbjct: 150 TELGEM 155
>gi|336272519|ref|XP_003351016.1| hypothetical protein SMAC_04320 [Sordaria macrospora k-hell]
gi|336464760|gb|EGO53000.1| hypothetical protein NEUTE1DRAFT_150414 [Neurospora tetrasperma
FGSC 2508]
gi|350296863|gb|EGZ77840.1| putative DNA-directed RNA polymerase II chain Rpb7 [Neurospora
tetrasperma FGSC 2509]
gi|380090783|emb|CCC04953.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 171
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + +AI A + +G I G L F V+ + +V+RPFKGE++ A V
Sbjct: 31 VKDVEGTCAGDY-YIIAIMDAFDVSEGRILPGNGLAEFTVKYRAVVWRPFKGEVVDAIVF 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+N GF +AG + IF L+P+++ P T++ + I+ + +KI G +
Sbjct: 90 SINPHGFFCQAGPLSIFVSSHLMPEEIHFDPNATPPQFTNNADMVIEPGTHVRVKIGGLR 149
Query: 118 VDVTEI 123
++ E+
Sbjct: 150 TELGEM 155
>gi|168006688|ref|XP_001756041.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692971|gb|EDQ79326.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 190
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 71/130 (54%), Gaps = 11/130 (8%)
Query: 1 MKDVEGT-CSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+KD + CS HGF V +T E + G IR+GT V F V +CIVFRP + EIL A V
Sbjct: 33 LKDFDAERCSEEHGFHVTVTTLEDVSPGKIRSGTGSVIFWVTFKCIVFRPIRNEILEAEV 92
Query: 60 TMVNKMGFLAEAGAVQIFCLIP----DDMELQTG---DLPSYTTSDGSVKIQKDCELWLK 112
T V + GFLA GA +IF +P D E + G + + S GSV I+ LK
Sbjct: 93 TDVLERGFLAACGASRIF--VPRKEMDGFEFRPGASLEYNEWHDSSGSV-IKPKSMARLK 149
Query: 113 IIGTQVDVTE 122
++GT+ + E
Sbjct: 150 VVGTRWEPKE 159
>gi|164427822|ref|XP_965434.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
gi|157071898|gb|EAA36198.2| DNA-directed RNA polymerase II 19 kDa polypeptide [Neurospora
crassa OR74A]
Length = 150
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 72/126 (57%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + +AI A + +G I G L F V+ + +V+RPFKGE++ A V
Sbjct: 10 VKDVEGTCAGDY-YIIAIMDAFDVSEGRILPGNGLAEFTVKYRAVVWRPFKGEVVDAIVF 68
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+N GF +AG + IF L+P+++ P T++ + I+ + +KI G +
Sbjct: 69 SINPHGFFCQAGPLSIFVSSHLMPEEIHFDPNATPPQFTNNADMVIEPGTHVRVKIGGLR 128
Query: 118 VDVTEI 123
++ E+
Sbjct: 129 TELGEM 134
>gi|326426973|gb|EGD72543.1| hypothetical protein PTSG_00566 [Salpingoeca sp. ATCC 50818]
Length = 171
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKG--LIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+DVE C G+HG+ V++ IG+G L+ G L F V + +VFRP K E++ A V
Sbjct: 32 EDVESKCIGKHGYIVSVIEIVKIGEGEILVARGETL--FPVTYRALVFRPVKNEVVDAIV 89
Query: 60 TMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
+ V KMG AE G +++F IP+ + T + P + T D + KIQ + + ++I+G
Sbjct: 90 STVTKMGIFAEVGPLRVFIHFQWIPNMVFDDTANPPCFRTDDFAEKIQPEDSIRIRILGV 149
Query: 117 QVDVTEI 123
+V + I
Sbjct: 150 RVQASSI 156
>gi|171684353|ref|XP_001907118.1| hypothetical protein [Podospora anserina S mat+]
gi|170942137|emb|CAP67789.1| unnamed protein product [Podospora anserina S mat+]
Length = 249
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + +AI + +G I G+ + F V + +V+RPFKGE++ A T
Sbjct: 31 VKDVEGTCTGDY-YIIAIMDTFDLSEGRILPGSGMAEFTVGYRAVVWRPFKGEVVDAICT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN+ GF + AG + IF IP D++ P T+ + I+ + +KI+G +
Sbjct: 90 SVNQHGFFSNAGPLSIFVSTHSIPPDIQYDANATPPQFTNHSDIVIEPGTHVRIKIMGLR 149
Query: 118 VDVTEI 123
V E+
Sbjct: 150 TGVGEM 155
>gi|156086074|ref|XP_001610446.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154797699|gb|EDO06878.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 175
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 4 VEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
VEG CS ++G+ V + G +++GT ++ V+ Q IVF+PFK E+L A VT VN
Sbjct: 34 VEGHCSSKYGYVVCVIRIIQNEVGRVQDGTGMIVVNVKYQAIVFKPFKDEVLDAIVTDVN 93
Query: 64 KMGFLAEAGAVQIF----CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
K+GF A+AG ++ F + P + P YT DG++ I+ E+ ++I G + D
Sbjct: 94 KLGFFAQAGPLKAFVSRTAIQPSFVYDSDAANPCYT--DGTISIKPQTEVRMRIQGIRYD 151
Query: 120 VTEI 123
+ +
Sbjct: 152 NSNM 155
>gi|402086572|gb|EJT81470.1| hypothetical protein GGTG_01448 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 170
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
++DVEG+C G + + ++I I G I G L F V + +V+RPFKGE + A V
Sbjct: 31 LQDVEGSCQGNY-YIISIMDTFDISPGKILPGNGLAEFTVGYRAVVWRPFKGETVDAIVD 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN GF A AG +++F +IP ++ P T +++ + +KI+GT+
Sbjct: 90 SVNPHGFFANAGPLRLFVSEHMIPHHVKYDPNASPPQFTDKEDYRVEPGTHVRVKIVGTR 149
Query: 118 VDVTEI 123
+VT +
Sbjct: 150 SEVTNM 155
>gi|124802663|ref|XP_001347553.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|23495135|gb|AAN35466.1|AE014833_37 DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 177
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
VEG CS ++G+ + + G +++GT ++ V+ Q IVF+PFK E+L A VT
Sbjct: 32 NSVEGQCSVKYGYVICVIRIIHSEPGRVQDGTGMIVVKVKYQAIVFKPFKDEVLDAIVTD 91
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNK+GF A+AG ++IF IP E + DL S G I+ + +K+ G +
Sbjct: 92 VNKLGFFAQAGPLKIFISRTAIPKYFEY-SEDLHYPCFSSGDYNIKPQTTVRIKLQGIRY 150
Query: 119 DVTEI 123
D++ +
Sbjct: 151 DLSNM 155
>gi|68075119|ref|XP_679476.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|70932637|ref|XP_737810.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
gi|56500233|emb|CAI04363.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
gi|56513506|emb|CAH85055.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi
chabaudi]
Length = 177
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 4/125 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+EG C+ ++G+ + + G +++GT ++ V+ Q IVF+PFK E+L A VT
Sbjct: 32 NSIEGQCTEKYGYIICVIRIMHSEPGRVQDGTGMIVVKVKYQAIVFKPFKDEVLDAIVTD 91
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNK+GF A+AG ++IF IP E T D S GS I+ + LK+ G +
Sbjct: 92 VNKLGFFAQAGPLKIFISRTAIPKYFEY-TEDAHYPCFSSGSHNIKPQTTVRLKLQGIRY 150
Query: 119 DVTEI 123
D++ +
Sbjct: 151 DLSNM 155
>gi|402585420|gb|EJW79360.1| DNA-directed RNA polymerase II subunit RPB7 [Wuchereria bancrofti]
Length = 107
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+VEGTC+G++GF VA+T ++IG GLI+ G V + V+ + IVFRPFKG+++ A V
Sbjct: 31 FNEVEGTCTGKYGFVVAVTTIDNIGAGLIQPGRGFVLYPVKYKAIVFRPFKGQVVDAVVN 90
Query: 61 MVNKMGFLAEAGAV 74
VNK+G + G +
Sbjct: 91 QVNKVGLFCDIGPL 104
>gi|290975310|ref|XP_002670386.1| predicted protein [Naegleria gruberi]
gi|284083944|gb|EFC37642.1| predicted protein [Naegleria gruberi]
Length = 161
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
DVEG C+GR G+ V++T IG+G I + TF + + IVF+PFKGE+ A V
Sbjct: 32 NDVEGQCTGRDGYIVSVTEITKIGQGKIGESSGYATFPINYKAIVFKPFKGEVCDAVVYK 91
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQTGDLP 92
V +GF A G + +F +PDDM+ P
Sbjct: 92 VTPVGFFASVGPLNVFVSSHAVPDDMKYDGHHTP 125
>gi|221054089|ref|XP_002261792.1| dna-directed rna polymerase ii [Plasmodium knowlesi strain H]
gi|193808252|emb|CAQ38955.1| dna-directed rna polymerase ii, putative [Plasmodium knowlesi
strain H]
Length = 177
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
VEG C+ ++G+ + + G +++GT ++ V+ Q IVF+PFK E+L A VT
Sbjct: 32 NSVEGQCNAKYGYIICVIRIIHCEPGRVQDGTSMIVVKVKYQAIVFKPFKDEVLDAVVTD 91
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNK+GF A+AG ++IF IP E + P + S G I+ + +K+ G +
Sbjct: 92 VNKLGFFAQAGPLKIFISRTAIPKYFEYSEDSHYPCF--SSGVYNIKPQTTVRIKLQGIR 149
Query: 118 VDVTEI 123
D++ +
Sbjct: 150 YDLSNM 155
>gi|440632114|gb|ELR02033.1| DNA-directed RNA polymerase II subunit G [Geomyces destructans
20631-21]
Length = 171
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEGTC+G++ + +++ ++ +G I G+ L F VR + +V+RPFK E + A VT
Sbjct: 31 LSDVEGTCTGQY-YIISVMDTFNVSEGRIIPGSGLAEFTVRYRAVVWRPFKNETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VN GF AG ++ F LI D++ P T + I+K ++ +K+IG +
Sbjct: 90 AVNPAGFHCMAGPLEFFVSRELISKDIKFDPNATPWQWTDNEDQVIEKGAQVRVKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 SDV 152
>gi|389582746|dbj|GAB65483.1| DNA-directed RNA polymerase II [Plasmodium cynomolgi strain B]
Length = 177
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
VEG C+ ++G+ + + G +++GT ++ V+ Q IVF+PFK E+L A VT
Sbjct: 32 NSVEGQCNAKYGYIICVIRIIHSEPGRVQDGTSMIVVKVKYQAIVFKPFKDEVLDAVVTD 91
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNK+GF A+AG ++IF IP E + P + S G I+ + +K+ G +
Sbjct: 92 VNKLGFFAQAGPLKIFISRTAIPKYFEYSEDSHYPCF--SSGVYNIKPQTTVRIKLQGIR 149
Query: 118 VDVTEI 123
D++ +
Sbjct: 150 YDLSNM 155
>gi|429963922|gb|ELA45920.1| hypothetical protein VCUG_02589 [Vavraia culicis 'floridensis']
Length = 155
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 21/127 (16%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRN-GTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+++VEG CS HGF +A+ +++G+ ++ + G+VL F V+ I +P + E++ A V
Sbjct: 31 LEEVEGACSSDHGFILAVISIQNVGEAVLNHMGSVL--FKVKYTAITLKPVRNEVIEAKV 88
Query: 60 TMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VNKMG A G + IF IP++++ I+KD + LKIIGT
Sbjct: 89 DEVNKMGLFAHIGPLSIFVSNYQIPNNLQ---------------ESIKKDTLVRLKIIGT 133
Query: 117 QVDVTEI 123
++D EI
Sbjct: 134 KIDKNEI 140
>gi|156082005|ref|XP_001608495.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148801066|gb|EDL42471.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 177
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 6/126 (4%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
VEG C+ ++G+ + + G +++GT ++ V+ Q IVF+PFK E+L A VT
Sbjct: 32 NSVEGQCNAKYGYIICVIRIIHSEPGRVQDGTSMIVVKVKYQAIVFKPFKDEVLDAVVTD 91
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNK+GF A+AG ++IF IP E + P +++ ++K Q + L+ G +
Sbjct: 92 VNKLGFFAQAGPLKIFISRTAIPKFFEYSEDSHYPCFSSGVHNIKPQTTVRIKLQ--GIR 149
Query: 118 VDVTEI 123
D++ +
Sbjct: 150 YDLSNM 155
>gi|50305083|ref|XP_452500.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641633|emb|CAH01351.1| KLLA0C06787p [Kluyveromyces lactis]
Length = 171
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 14/132 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEGTC+G+ G+ + + E+I I G +L T F V+ + +V++PFKGE+L
Sbjct: 31 LQEVEGTCTGKFGYILCVLDCENIE---IERGRILPTDGSAEFTVKYRAVVWKPFKGEVL 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V+ +GF E G + +F L+P+D+ +G + PSY +S+ I K + L
Sbjct: 88 DGIVSSCTNLGFEVEVGPLSVFVSPFLMPEDLTFNSGSNPPSYQSSEQI--ITKGSRVRL 145
Query: 112 KIIGTQVDVTEI 123
KI+G + +V I
Sbjct: 146 KIVGARSEVNSI 157
>gi|399216595|emb|CCF73282.1| unnamed protein product [Babesia microti strain RI]
Length = 178
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+VEG C+ + G+ V + G +++GT ++ V+ Q IVF+PFK E+L A VT
Sbjct: 32 NEVEGHCTAKFGYVVCVIRIVHCESGRVQDGTGMIIVSVKYQAIVFKPFKDEVLDAIVTD 91
Query: 62 VNKMGFLAEAGAVQIF----CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
VNK+GF A+AG +++F + P P + SDG+ I+ E+ +++ G +
Sbjct: 92 VNKLGFFAQAGPLKVFVSKSSIAPGYAYQDDASQPCF--SDGTSVIRSQTEIRMRLQGIR 149
Query: 118 VDVTEI 123
D + +
Sbjct: 150 YDNSNM 155
>gi|363752353|ref|XP_003646393.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890028|gb|AET39576.1| hypothetical protein Ecym_4540 [Eremothecium cymbalariae
DBVPG#7215]
Length = 171
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 14/132 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEGTC+G+ G+ + + E+I I G +L T F V+ + +V++PFKGE++
Sbjct: 31 LQEVEGTCTGKFGYILCVLDCENIE---IERGRILPTDGSAEFTVKYRAVVWKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V+ +GF + G + +F L+PDD+ +G + PSY +S+ I K + L
Sbjct: 88 DGIVSSCTNLGFEVDVGPLSVFVSPFLMPDDLTFNSGSNPPSYQSSEQI--ITKGSRVRL 145
Query: 112 KIIGTQVDVTEI 123
KI+G + +V I
Sbjct: 146 KIVGARSEVNSI 157
>gi|239607718|gb|EEQ84705.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ER-3]
gi|327355593|gb|EGE84450.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis ATCC 18188]
Length = 169
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G + G+ L + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGVCTGDY-YIVCVMDTYDISEGRVLPGSGLAEYTIMYRAIVWKPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T +G I+K L +K+IG +
Sbjct: 90 SVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIEKGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|154283689|ref|XP_001542640.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|150410820|gb|EDN06208.1| hypothetical protein HCAG_02811 [Ajellomyces capsulatus NAm1]
gi|225561964|gb|EEH10244.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus G186AR]
gi|240275577|gb|EER39091.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H143]
gi|325091406|gb|EGC44716.1| RNA polymerase II subunit 7 [Ajellomyces capsulatus H88]
Length = 169
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G + G+ L + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGVCTGDY-YIVCVMDTYDISEGRVLPGSGLAEYTIMYRAIVWKPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T +G I+K L +K+IG +
Sbjct: 90 SVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIEKGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|45198920|ref|NP_985949.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|44984949|gb|AAS53773.1| AFR402Cp [Ashbya gossypii ATCC 10895]
gi|374109179|gb|AEY98085.1| FAFR402Cp [Ashbya gossypii FDAG1]
Length = 171
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 76/132 (57%), Gaps = 14/132 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEGTC+G+ G+ + + +E+I I G +L T F V+ + +V++PFKGE++
Sbjct: 31 LQEVEGTCTGKFGYILCVLDSENIE---IERGRILPTDGSAEFTVKYRAVVWKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V+ +GF + G + +F L+P+D+ +G + PSY +S+ I K + L
Sbjct: 88 DGIVSSCTNLGFEVDVGPLSVFVSPFLMPEDLTFNSGSNPPSYQSSEQI--ITKGSRVRL 145
Query: 112 KIIGTQVDVTEI 123
KI+G + +V I
Sbjct: 146 KIVGARSEVNSI 157
>gi|226291032|gb|EEH46460.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb18]
Length = 169
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G + G+ L + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGVCTGDY-YIVCVMDTYDISEGRVIPGSGLAEYTIMYRAIVWKPFKGETVDAVVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T +G I+K L +K+IG +
Sbjct: 90 SVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIEKGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|261197854|ref|XP_002625329.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
gi|239595292|gb|EEQ77873.1| RNA polymerase II subunit 7 [Ajellomyces dermatitidis SLH14081]
Length = 169
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G + G+ L + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGVCTGDY-YIVCVMDTYDISEGRVLPGSGLAEYTIMYRAIVWKPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T +G I+K L +K+IG +
Sbjct: 90 SVKNQGIFAEVGQLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIEKGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|255717771|ref|XP_002555166.1| KLTH0G02926p [Lachancea thermotolerans]
gi|238936550|emb|CAR24729.1| KLTH0G02926p [Lachancea thermotolerans CBS 6340]
Length = 171
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAES--IGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+++VEGTC+G+ G+ + + E+ I +G I G F V+ + +V++PFKGE++
Sbjct: 31 LQEVEGTCTGKFGYILCVLDCENVEIERGRILPGDGSAEFTVKYRAVVWKPFKGEVVDGV 90
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWLKII 114
V+ +GF + G + +F L+P+D+ +G + PSY +S+ I K + LKI+
Sbjct: 91 VSSCTNLGFEVDVGPLSVFVSPFLMPEDLSYNSGSNPPSYQSSEQI--ITKGSRVRLKIV 148
Query: 115 GTQVDVTEI 123
G + +V I
Sbjct: 149 GARSEVNSI 157
>gi|225679312|gb|EEH17596.1| RNA polymerase II subunit 7 [Paracoccidioides brasiliensis Pb03]
Length = 195
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G + G+ L + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGVCTGDY-YIVCVMDTYDISEGRVIPGSGLAEYTIMYRAIVWKPFKGETVDAVVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T +G I+K L +K+IG +
Sbjct: 90 SVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIEKGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|295665476|ref|XP_002793289.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278203|gb|EEH33769.1| DNA-directed RNA polymerase II subunit RPB7 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 202
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G + G+ L + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGVCTGDY-YIVCVMDTYDISEGRVIPGSGLAEYTIMYRAIVWKPFKGETVDAVVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T +G I+K L +K+IG +
Sbjct: 90 SVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNGEQVIEKGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|440491704|gb|ELQ74318.1| DNA-directed RNA polymerase subunit E' [Trachipleistophora hominis]
Length = 155
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 15/124 (12%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRN-GTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+++VEG CS HGF +A+ +++G+ ++ + G+VL F V+ I +P + E++ V
Sbjct: 31 LEEVEGACSSDHGFILAVLSIQNVGEAVLNHMGSVL--FKVKYTAITLKPVRNEVIEVKV 88
Query: 60 TMVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
VN MG A G + IF +P S+ I+KD + LKIIGT++D
Sbjct: 89 DEVNTMGLFAHIGPLSIFV--------SNYQIP----SNLQESIKKDTLVRLKIIGTKID 136
Query: 120 VTEI 123
EI
Sbjct: 137 KNEI 140
>gi|242820484|ref|XP_002487519.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
gi|218713984|gb|EED13408.1| RNA polymerase II subunit 7 [Talaromyces stipitatus ATCC 10500]
Length = 169
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + G+ + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVIPGSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + G +P T I++ L LKI+G + DV+
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIKWEPGTVPPQYTDHADQVIERGTSLRLKILGVKPDVS 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|425765811|gb|EKV04459.1| RNA polymerase II subunit 7 [Penicillium digitatum PHI26]
gi|425783900|gb|EKV21717.1| RNA polymerase II subunit 7 [Penicillium digitatum Pd1]
Length = 169
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + G + +R + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVMPGIGQAEYTIRYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + +P T I+K L LKI+G + DV
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|255931335|ref|XP_002557224.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581843|emb|CAP79966.1| Pc12g03390 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 167
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + G + +R + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVMPGIGQAEYTIRYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + +P T I+K L LKI+G + DV
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|212545789|ref|XP_002153048.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
gi|210064568|gb|EEA18663.1| RNA polymerase II subunit 7 [Talaromyces marneffei ATCC 18224]
Length = 169
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG G + G+ + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGDGRVIPGSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + G +P T I++ L LKI+G + DV+
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIKWEPGTVPPQYTDHADQVIERGTSLRLKILGVKPDVS 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|119188519|ref|XP_001244866.1| hypothetical protein CIMG_04307 [Coccidioides immitis RS]
Length = 180
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G I G+ + + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGICTGDY-YIVCVMDTYDISEGRIIPGSGMAEYTIMYRAIVWKPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T + I+K L +K+IG +
Sbjct: 90 SVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNADQVIEKGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|296805993|ref|XP_002843816.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
gi|238845118|gb|EEQ34780.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma otae CBS
113480]
Length = 169
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G I G+ L + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGVCTGDY-YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVWKPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T + I+K L +K+IG +
Sbjct: 90 SVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNADQVIEKGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|303323777|ref|XP_003071880.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240111582|gb|EER29735.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320031834|gb|EFW13792.1| RNA polymerase II subunit 7 [Coccidioides posadasii str. Silveira]
gi|392867774|gb|EAS33470.2| RNA polymerase II subunit 7 [Coccidioides immitis RS]
Length = 169
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G I G+ + + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGICTGDY-YIVCVMDTYDISEGRIIPGSGMAEYTIMYRAIVWKPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T + I+K L +K+IG +
Sbjct: 90 SVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNADQVIEKGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|119484588|ref|XP_001262073.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
gi|119410229|gb|EAW20176.1| RNA polymerase II subunit 7 [Neosartorya fischeri NRRL 181]
Length = 167
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + G+ + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + +P T I+K L LKI+G + DV
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|145253060|ref|XP_001398043.1| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus niger CBS
513.88]
gi|134083601|emb|CAL00516.1| unnamed protein product [Aspergillus niger]
gi|350633119|gb|EHA21485.1| DNA-directed RNA polymerase II [Aspergillus niger ATCC 1015]
gi|358372658|dbj|GAA89260.1| RNA polymerase II subunit 7 [Aspergillus kawachii IFO 4308]
Length = 167
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + G+ + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + +P T I+K L LKI+G + DV
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|121719878|ref|XP_001276637.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
gi|119404849|gb|EAW15211.1| RNA polymerase II subunit 7 [Aspergillus clavatus NRRL 1]
Length = 169
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + G+ + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVLPGSGSAEYTIKYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + +P T I+K L LKI+G + DV
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|160330989|ref|XP_001712202.1| rpb7 [Hemiselmis andersenii]
gi|159765649|gb|ABW97877.1| rpb7 [Hemiselmis andersenii]
Length = 175
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 3 DVEGTCSGRHGFAVAITGA-ESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+VEG+ +G G V IT GKG + GT F V + I FRPFKGE+ + +T
Sbjct: 33 NVEGSYAGPFGNIVIITEICNKWGKGKLIIGTPSAMFNVTFRAITFRPFKGEVFDSIITN 92
Query: 62 VNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+ +GF +EAGA+QIF +P+D + D + T K KD + +KII +
Sbjct: 93 LTNVGFFSEAGALQIFVSKNQLPNDFQYNGKDKVFFNTMSPEEKFCKDSLIRIKIISVK 151
>gi|67522128|ref|XP_659125.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|40744621|gb|EAA63777.1| hypothetical protein AN1521.2 [Aspergillus nidulans FGSC A4]
gi|259486847|tpe|CBF85037.1| TPA: RNA polymerase II subunit 7 (AFU_orthologue; AFUA_8G05300)
[Aspergillus nidulans FGSC A4]
Length = 169
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + G + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVLPGNGQAEYTIKYRAIIWKPFRGETVDALVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D+ + +P T I+K L LKI+G + DV
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIRWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|315046352|ref|XP_003172551.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma gypseum
CBS 118893]
gi|311342937|gb|EFR02140.1| DNA-directed RNA polymerase II subunit RPB7 [Arthroderma gypseum
CBS 118893]
Length = 175
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG-- 58
+ DVEG C+G + + V + I +G I G+ L + + + IV++PFKGE L AG
Sbjct: 31 LDDVEGVCTGDY-YIVCVMDMYDISEGRIIPGSGLAEYTIVYRAIVWKPFKGETLTAGEK 89
Query: 59 ----VTMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWL 111
VT V G AE G + +F LIP +++ P T + I+K L +
Sbjct: 90 VDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNADQVIEKGTNLRI 149
Query: 112 KIIGTQVDV 120
K+IG + DV
Sbjct: 150 KLIGLRNDV 158
>gi|237832997|ref|XP_002365796.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
gi|211963460|gb|EEA98655.1| DNA-directed RNA polymerase II subunit RPB7, putative [Toxoplasma
gondii ME49]
Length = 207
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+ VEG C G+ + + + G +++GT +V R Q I F+PFK E+L A +T
Sbjct: 32 QQVEGKCLHNLGYIICVIRIVHMEAGRVQDGTGMVIVAARYQAIAFKPFKDEVLDAVITD 91
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNK+G A+ G +++F +P Q D +DG V+++ D ++ L+++G +
Sbjct: 92 VNKLGLFAQCGPLKVFVSRASLPPSFVYQD-DSAVGCMTDGEVELRVDSDIRLRLLGVRY 150
Query: 119 D 119
D
Sbjct: 151 D 151
>gi|221488256|gb|EEE26470.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221508765|gb|EEE34334.1| DNA-directed RNA polymerase II 19 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 207
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+ VEG C G+ + + + G +++GT +V R Q I F+PFK E+L A +T
Sbjct: 32 QQVEGKCLHNLGYIICVIRIVHMEAGRVQDGTGMVIVAARYQAIAFKPFKDEVLDAVITD 91
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNK+G A+ G +++F +P Q D +DG V+++ D ++ L+++G +
Sbjct: 92 VNKLGLFAQCGPLKVFVSRASLPPSFVYQD-DSAVGCMTDGEVELRVDSDIRLRLLGVRY 150
Query: 119 D 119
D
Sbjct: 151 D 151
>gi|90018178|gb|ABD83902.1| DNA directed RNA polymerase II polypeptide G [Ictalurus punctatus]
Length = 86
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 38 FLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPS 93
+ V+ + IVFRPFKGE++ A VT VNK+G E G + F IP +ME + P
Sbjct: 5 YPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPC 64
Query: 94 YTTSDGSVKIQKDCELWLKIIG 115
Y T D V IQ++ E+ LKI+G
Sbjct: 65 YKTVDEDVVIQQEDEIRLKIVG 86
>gi|401408717|ref|XP_003883807.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
gi|325118224|emb|CBZ53775.1| putative DNA-directed RNA polymerase II subunit RPB7 [Neospora
caninum Liverpool]
Length = 209
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+ VEG C G+ + + + G +++GT +V R Q I F+PFK E+L A +T
Sbjct: 32 QQVEGKCLHNLGYIICVIRIVHMEAGRVQDGTGMVIVAARYQAIAFKPFKDEVLDAVITD 91
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
VNK+G A+ G +++F +P Q D +DG V+++ D ++ L+++G +
Sbjct: 92 VNKLGLFAQCGPLKVFVSRASLPPSFVYQD-DSAVGCMTDGEVELRVDSDIRLRLLGVRY 150
Query: 119 D 119
D
Sbjct: 151 D 151
>gi|327305241|ref|XP_003237312.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
gi|326460310|gb|EGD85763.1| RNA polymerase II subunit 7 [Trichophyton rubrum CBS 118892]
Length = 191
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G I G+ L + + + IV++PFKGE + A VT
Sbjct: 31 LDDVEGICTGDY-YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVWKPFKGETVDAIVT 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V G AE G + +F LIP +++ P T + I+ L +K+IG +
Sbjct: 90 SVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDSTPPQYTDNADQVIETGTNLRIKLIGLR 149
Query: 118 VDV 120
DV
Sbjct: 150 NDV 152
>gi|298710882|emb|CBJ26391.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 177
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 1 MKDVEGTCSGRHGFAVAITGA--ESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+++VEGT G GF + +T + I G I T LV + I FRPF E+L A
Sbjct: 31 IEEVEGTSVGSLGFVITVTNVSDDQIQMGTIEFDTGFANVLVVYRAICFRPFVNEVLDAA 90
Query: 59 VTMVNKMGFLAEAGAVQIFCL---IPDDME---LQTGDLPSYTTSDGSVKIQKDCELWLK 112
V+ V ++GF AE G +++F +PDD+ GD+ ++ D +I+ C + L+
Sbjct: 91 VSHVTELGFFAEVGPLEVFVSRLGMPDDIAGGYDPVGDM-WVSSEDSDTEIKSGCGVRLR 149
Query: 113 IIGTQV 118
IIG V
Sbjct: 150 IIGVTV 155
>gi|83765518|dbj|BAE55661.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864670|gb|EIT73964.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 169
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + + + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVLPSSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + +P T I+K L LKI+G + DV
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|401827167|ref|XP_003887676.1| RNA polymerase II subunit 7 [Encephalitozoon hellem ATCC 50504]
gi|392998682|gb|AFM98695.1| RNA polymerase II subunit 7 [Encephalitozoon hellem ATCC 50504]
Length = 155
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 15/124 (12%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKG-LIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+ VEG+CS G+ V + + I + +I G + F V+ + + +PFKGEI+ A V
Sbjct: 31 LTKVEGSCSSS-GYVVMVLSIDEISESRIILTGETI--FTVKYKALTLKPFKGEIIDANV 87
Query: 60 TMVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMG A G + +F + +P++ + +I KD + LKIIGT++D
Sbjct: 88 VETNKMGVFASVGPLTVF--------ISNHQIPNFLLEN---EITKDVMIRLKIIGTKID 136
Query: 120 VTEI 123
T+I
Sbjct: 137 STKI 140
>gi|115396608|ref|XP_001213943.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114193512|gb|EAU35212.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 174
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + + + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVLPSSGHAEYTIKYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + +P T I+K L LKI+G + DV
Sbjct: 94 TGIFTLAGPLAVFIARKNIPSDIKWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA 153
Query: 122 EI 123
I
Sbjct: 154 AI 155
>gi|238483091|ref|XP_002372784.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
gi|317139645|ref|XP_001817663.2| DNA-directed RNA polymerase II subunit rpb7 [Aspergillus oryzae
RIB40]
gi|220700834|gb|EED57172.1| RNA polymerase II subunit 7 [Aspergillus flavus NRRL3357]
Length = 191
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + + + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVLPSSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
G AG + +F IP D++ + +P T I+K L LKI+G + DV
Sbjct: 94 TGIFTLAGPLSVFIARKNIPSDIKWEPNTVPPQYTDHADQVIEKGTSLRLKILGVKPDVA 153
Query: 122 EIE 124
I
Sbjct: 154 AIN 156
>gi|444319100|ref|XP_004180207.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
gi|387513249|emb|CCH60688.1| hypothetical protein TBLA_0D01800 [Tetrapisispora blattae CBS 6284]
Length = 171
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + + I I G ++ T F VR + +VF+PFKGE++
Sbjct: 31 LQEVEGSCTGKFGYILCVLDYDKID---IERGRIIPTDGSAEFTVRYRAVVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D++ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLQFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|254581916|ref|XP_002496943.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
gi|238939835|emb|CAR28010.1| ZYRO0D11726p [Zygosaccharomyces rouxii]
Length = 171
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + + I I G +L T F VR + IVF+PFKGE++
Sbjct: 31 LQEVEGSCTGKFGYILCVLDYDRID---IERGRILPTDGSAEFTVRYRAIVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLMFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|396081803|gb|AFN83418.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon romaleae
SJ-2008]
Length = 155
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 15/124 (12%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKG-LIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+ VEG+CS G+ V + + + + +I G + F V+ + + +PFKGEI+ A V
Sbjct: 31 LSKVEGSCSSS-GYVVMVLSIDEVSESRIILTGETI--FTVKYKALTLKPFKGEIIDANV 87
Query: 60 TMVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMG A G + +F + +P++ + +I KD + LKIIGT++D
Sbjct: 88 VETNKMGVFASVGPLTVF--------ISNHQIPNFLLEN---EITKDIMIRLKIIGTKID 136
Query: 120 VTEI 123
T+I
Sbjct: 137 STKI 140
>gi|110590860|pdb|2B8K|G Chain G, 12-Subunit Rna Polymerase Ii
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + ++I I+ G +L T F V+ + +VF+PFKGE++
Sbjct: 31 LEEVEGSCTGKFGYILCVLDYDNID---IQRGRILPTDGSAEFNVKYRAVVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIK--SRIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|367008802|ref|XP_003678902.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
gi|359746559|emb|CCE89691.1| hypothetical protein TDEL_0A03590 [Torulaspora delbrueckii]
Length = 171
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + + I I G +L T F+VR + +VF+PF+GE++
Sbjct: 31 LQEVEGSCTGKFGYILCVLDYDKID---IERGRILPTDGSADFIVRYRAVVFKPFRGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLIFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|366988751|ref|XP_003674143.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
gi|342300006|emb|CCC67762.1| hypothetical protein NCAS_0A12040 [Naumovozyma castellii CBS 4309]
Length = 171
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + + I I G +L T F V+ + IVF+PFKGE++
Sbjct: 31 LQEVEGSCTGKFGYILCVLDYDKIE---IERGRILPTDGSAEFQVKYRAIVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPSDLNFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|365761292|gb|EHN02956.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 150
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + ++I I+ G +L T F V+ + +VF+PFKGE++
Sbjct: 10 LEEVEGSCTGKFGYILCVLDYDNID---IQRGRILPTDGSAEFNVKYRAVVFKPFKGEVV 66
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 67 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKS--RIRV 124
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 125 KIEGCISQVSSIH 137
>gi|82596806|ref|XP_726413.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii 17XNL]
gi|23481815|gb|EAA17978.1| RNA polymerase II subunit 7 [Plasmodium yoelii yoelii]
Length = 193
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 22/142 (15%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGE-------- 53
+EG C+ ++G+ + + G +++GT ++ V+ Q IVF+PFK E
Sbjct: 32 NSIEGQCTEKYGYIICVIRIMHSEPGRVQDGTGMIVVKVKYQAIVFKPFKDEVLFKINKL 91
Query: 54 --------ILGAGVTMVNKMGFLAEAGAVQIF---CLIPDDMEL-QTGDLPSYTTSDGSV 101
+L A VT VNK+GF A+AG ++IF IP E + P + S GS
Sbjct: 92 INKLIKSFVLDAIVTDVNKLGFFAQAGPLKIFISRTAIPKYFEYNEDAHYPCF--SSGSH 149
Query: 102 KIQKDCELWLKIIGTQVDVTEI 123
I+ + LK+ G + D++ +
Sbjct: 150 NIKPQTTVRLKLQGIRYDLSNM 171
>gi|323309699|gb|EGA62907.1| Rpb7p [Saccharomyces cerevisiae FostersO]
gi|323338133|gb|EGA79367.1| Rpb7p [Saccharomyces cerevisiae Vin13]
gi|392300523|gb|EIW11614.1| Rpb7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 150
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + ++I I+ G +L T F V+ + +VF+PFKGE++
Sbjct: 10 LEEVEGSCTGKFGYILCVLDYDNID---IQRGRILPTDGSAEFNVKYRAVVFKPFKGEVV 66
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 67 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKS--RIRV 124
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 125 KIEGCISQVSSIH 137
>gi|401624138|gb|EJS42207.1| rpb7p [Saccharomyces arboricola H-6]
Length = 171
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + ++I I+ G +L T F V+ + +VF+PFKGE++
Sbjct: 31 LEEVEGSCTGKFGYILCVLDYDNID---IQRGRILPTDGSAEFNVKYRAVVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLAFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|401838577|gb|EJT42119.1| RPB7-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 171
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + ++I I+ G +L T F V+ + +VF+PFKGE++
Sbjct: 31 LEEVEGSCTGKFGYILCVLDYDNID---IQRGRILPTDGSAEFNVKYRAVVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|398366567|ref|NP_010692.3| Rpb7p [Saccharomyces cerevisiae S288c]
gi|464672|sp|P34087.1|RPB7_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB7;
Short=RNA polymerase II subunit B7; AltName: Full=B16
gi|30749743|pdb|1NT9|G Chain G, Complete 12-Subunit Rna Polymerase Ii
gi|34810559|pdb|1PQV|G Chain G, Rna Polymerase Ii-Tfiis Complex
gi|58177170|pdb|1WCM|G Chain G, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679450|pdb|1Y1W|G Chain G, Complete Rna Polymerase Ii Elongation Complex
gi|61679467|pdb|1Y77|G Chain G, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679508|pdb|1Y1V|G Chain G, Refined Rna Polymerase Ii-tfiis Complex
gi|61679521|pdb|1Y1Y|G Chain G, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|61679566|pdb|1Y14|B Chain B, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|61679568|pdb|1Y14|D Chain D, Crystal Structure Of Yeast Subcomplex Of Rpb4 And Rpb7
gi|83754249|pdb|2B63|G Chain G, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|134104680|pdb|2JA5|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104695|pdb|2JA6|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104716|pdb|2JA7|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104728|pdb|2JA7|S Chain S, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104740|pdb|2JA8|G Chain G, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|160877779|pdb|2R7Z|G Chain G, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172233|pdb|2R92|G Chain G, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172246|pdb|2R93|G Chain G, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613468|pdb|2VUM|G Chain G, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983596|pdb|3FKI|G Chain G, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|240104517|pdb|3H3V|H Chain H, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839447|pdb|3HOU|G Chain G, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839462|pdb|3HOU|S Chain S, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839477|pdb|3HOV|G Chain G, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839492|pdb|3HOW|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839507|pdb|3HOX|G Chain G, Complete Rna Polymerase Ii Elongation Complex V
gi|254839522|pdb|3HOY|G Chain G, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839537|pdb|3HOZ|G Chain G, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471952|pdb|3I4M|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471967|pdb|3I4N|G Chain G, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618771|pdb|3K1F|G Chain G, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|325053969|pdb|3PO2|G Chain G, Arrested Rna Polymerase Ii Elongation Complex
gi|325053984|pdb|3PO3|G Chain G, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634544|pdb|3QT1|G Chain G, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|353251639|pdb|3J0K|G Chain G, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380842|pdb|4A3C|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546296|pdb|4A3B|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546314|pdb|4A3D|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546331|pdb|4A3E|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546348|pdb|4A3F|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546365|pdb|4A3J|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546382|pdb|4A3K|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546398|pdb|4A3L|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546415|pdb|4A3M|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977885|pdb|4A3G|G Chain G, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977900|pdb|4A3I|G Chain G, Rna Polymerase Ii Binary Complex With Dna
gi|380764985|pdb|4A93|G Chain G, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145452|pdb|4BBR|G Chain G, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145465|pdb|4BBS|G Chain G, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|300239|gb|AAC60558.1| RNA polymerase II subunit RPB7 [Saccharomyces cerevisiae]
gi|927335|gb|AAB64844.1| Rpb7p: RNA polymerase II subunit [Saccharomyces cerevisiae]
gi|151942377|gb|EDN60733.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190404660|gb|EDV07927.1| RNA polymerase II dissociable subunit [Saccharomyces cerevisiae
RM11-1a]
gi|256271208|gb|EEU06290.1| Rpb7p [Saccharomyces cerevisiae JAY291]
gi|259145642|emb|CAY78906.1| Rpb7p [Saccharomyces cerevisiae EC1118]
gi|285811422|tpg|DAA12246.1| TPA: Rpb7p [Saccharomyces cerevisiae S288c]
gi|323305480|gb|EGA59224.1| Rpb7p [Saccharomyces cerevisiae FostersB]
gi|323334047|gb|EGA75432.1| Rpb7p [Saccharomyces cerevisiae AWRI796]
gi|323349147|gb|EGA83378.1| Rpb7p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355561|gb|EGA87382.1| Rpb7p [Saccharomyces cerevisiae VL3]
gi|349577455|dbj|GAA22624.1| K7_Rpb7p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365766199|gb|EHN07698.1| Rpb7p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 171
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + ++I I+ G +L T F V+ + +VF+PFKGE++
Sbjct: 31 LEEVEGSCTGKFGYILCVLDYDNID---IQRGRILPTDGSAEFNVKYRAVVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|410080111|ref|XP_003957636.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
gi|372464222|emb|CCF58501.1| hypothetical protein KAFR_0E03500 [Kazachstania africana CBS 2517]
Length = 171
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + + I I G +L T F V+ + +VF+PFKGE++
Sbjct: 31 LQEVEGSCTGKFGYILCVLNYDQIE---IERGRILPTDGSAEFKVKYRAVVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|348564204|ref|XP_003467895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like [Cavia
porcellus]
Length = 209
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 29/125 (23%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V
Sbjct: 95 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPV---------------------- 132
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 133 ---GLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 189
Query: 119 DVTEI 123
D +I
Sbjct: 190 DKNDI 194
>gi|367005626|ref|XP_003687545.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS 4417]
gi|357525849|emb|CCE65111.1| hypothetical protein TPHA_0J02900 [Tetrapisispora phaffii CBS 4417]
Length = 171
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + + I I G +L T F V+ + +VF+PFKGE++
Sbjct: 31 LQEVEGSCTGKFGYILCVLDYDKIE---IERGRILATDGSAEFTVKYRAVVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF A+ G +++F L+P D+ G + PSY +++ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEAQVGPMKVFVTKHLMPQDLVFNAGSNPPSYQSAEDVITIKS--RVRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|50287313|ref|XP_446086.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525393|emb|CAG59010.1| unnamed protein product [Candida glabrata]
gi|114049595|emb|CAL07955.1| hypothetical protein [Candida glabrata]
Length = 171
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + ++I I G +L T F V+ + +VF+PFKGE++
Sbjct: 31 LQEVEGSCTGKFGYILCVLDYDNIE---IERGRILPTDGSAEFNVKYRAVVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDIITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|365981979|ref|XP_003667823.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
gi|343766589|emb|CCD22580.1| hypothetical protein NDAI_0A04230 [Naumovozyma dairenensis CBS 421]
Length = 171
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + + I I G +L T F V+ + IVF+PFKGE++
Sbjct: 31 LQEVEGSCTGKFGYILCVLDYDKIE---IERGRILPTDGSAEFNVKYRAIVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPSDLMFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|156835988|ref|XP_001642239.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112712|gb|EDO14381.1| hypothetical protein Kpol_186p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 171
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 72/133 (54%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + + I I G +L T F V+ + IVF+PFKGE++
Sbjct: 31 LQEVEGSCTGKFGYILCVLDYDKIE---IERGRILPTDGSAEFTVKYRAIVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLIFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>gi|397575684|gb|EJK49830.1| hypothetical protein THAOC_31253 [Thalassiosira oceanica]
Length = 183
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 2 KDVEGTCSGRHGFAVAI--TGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
++VEG +GF V + E I G+I T V F V+ ++ RPF E++ A V
Sbjct: 32 EEVEGLALANYGFVVNVIEVPEEQIRSGVIEYDTGNVVFYVKYTALMLRPFVNEVIDATV 91
Query: 60 TMVNKMGFLAEAGAVQIFC---LIPDDM-ELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
N++GF A G ++IF +P+DM G+ S+ + D V I C + LKI G
Sbjct: 92 AQCNELGFFAYVGPLRIFVSKHSMPEDMFNGFDGERDSWVSDDKEVVISSGCGVRLKIKG 151
Query: 116 TQVDVTEI 123
V+ I
Sbjct: 152 RTVEQNNI 159
>gi|449015716|dbj|BAM79118.1| RNA polymerase II subunit G [Cyanidioschyzon merolae strain 10D]
Length = 174
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 5 EGTCSGRHGFAVAITGAE-SIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
EGT SG +G+ +A+ E + G I GT F +R + +V+RPF GE+L + V
Sbjct: 36 EGTTSGLYGYLLAVVEVERPLPPGRILPGTGHAIFRLRYKALVYRPFLGEVLDGVIASVT 95
Query: 64 KMGFLAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSV-KIQKDCELWLKIIGTQVD 119
+ G G + +F +P DME + + GS +++ + L+I+G + D
Sbjct: 96 RHGVFVAVGPLSVFVSARNVPSDMEFDDSEQCFASVVQGSEDRLEVGTMVRLRIVGMRRD 155
Query: 120 VTEIEKARREVGKQRAD 136
TEI VG RAD
Sbjct: 156 ATEIAA----VGTLRAD 168
>gi|189203085|ref|XP_001937878.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|330945443|ref|XP_003306557.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
gi|187984977|gb|EDU50465.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|311315891|gb|EFQ85355.1| hypothetical protein PTT_19733 [Pyrenophora teres f. teres 0-1]
Length = 171
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG+ +G++ V I + I G + GT ++V + +V+RP+KGE++ VT V +
Sbjct: 35 EGSSTGKYTI-VCILDSFDISDGKVMPGTGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLR 93
Query: 65 MGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
GF + G++Q F +IP +++ P T DG I+K + +KI G + +V
Sbjct: 94 TGFFVDCGSLQAFVGRSMIPAEIKFDANATPPQWTDDGEQVIEKGTNIRIKIKGLRSEVD 153
Query: 122 EI 123
++
Sbjct: 154 KM 155
>gi|378733137|gb|EHY59596.1| DNA-directed RNA polymerase II subunit G [Exophiala dermatitidis
NIH/UT8656]
Length = 169
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
D+EG+C+G + + V I +I G +R G+ F + + I+++PFKGE + V+ +
Sbjct: 33 DLEGSCNGEY-YIVCIMDIYNISAGRVRPGSGDAHFTILYRAILWKPFKGETIDCAVSSI 91
Query: 63 NKMGFLAEAGAVQIFC----LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
G EAG + +F L PD P Y+ + G V I+K + +++IG +
Sbjct: 92 KPQGVFCEAGPLTVFVSKLHLPPDMRHNPDATPPQYSNNAGDV-IEKGSAVRVQLIGLRS 150
Query: 119 DV 120
DV
Sbjct: 151 DV 152
>gi|303390119|ref|XP_003073291.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon
intestinalis ATCC 50506]
gi|303302436|gb|ADM11931.1| DNA-directed RNA polymerase II subunit E' [Encephalitozoon
intestinalis ATCC 50506]
Length = 155
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 15/124 (12%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKG-LIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+ VEG+CS G+ + + + I + +I G + F V+ + + +P KGEI+ A V
Sbjct: 31 LSKVEGSCSSS-GYVIMVLSIDEISESRIILTGETI--FTVKYKALTLKPLKGEIVDANV 87
Query: 60 TMVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMG A G + +F + +P++ + +I KD + LKIIGT++D
Sbjct: 88 VETNKMGVFASVGPLTVF--------ISNHQIPNFLLEN---EITKDVMIRLKIIGTKID 136
Query: 120 VTEI 123
T+I
Sbjct: 137 STKI 140
>gi|224002987|ref|XP_002291165.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220972941|gb|EED91272.1| 19kDa subunit of RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 183
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 6/124 (4%)
Query: 2 KDVEGTCSGRHGFAVAI--TGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
++VEG +GF V + E I G+I T V F V+ ++ RPF E++ A V
Sbjct: 32 EEVEGLALANYGFVVNVIEVPEEQIRSGIIEYDTGNVVFYVKYTALLLRPFINEVVDATV 91
Query: 60 TMVNKMGFLAEAGAVQIFC---LIPDDM-ELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
N++GF A G ++IF +P+DM G+ S+ + D V I C + LKI G
Sbjct: 92 AQCNELGFFAYVGPLRIFVSKHSMPEDMFNGFDGERDSWVSDDKEVVIASGCGVRLKIKG 151
Query: 116 TQVD 119
V+
Sbjct: 152 RTVE 155
>gi|294875732|ref|XP_002767446.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239869032|gb|EER00164.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 143
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 3 DVEGTCSGRH-GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
++EG S H G V I K I++GT + V Q I+FRPFK E++ V+
Sbjct: 33 ELEGNLSKNHDGTIVHIINIVDKSKPKIQDGTGMALVNVVFQGIIFRPFKNEVMDCWVSE 92
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQTGDLPS-YTTSDGSVKIQKDCE 108
V+K+GF A G +++F +PDD+ + P Y+ +D +V IQ+D E
Sbjct: 93 VSKLGFFAYFGPMKVFVSRSSMPDDVIFRETATPVCYSDADQTVVIQQDSE 143
>gi|451849958|gb|EMD63261.1| hypothetical protein COCSADRAFT_38126 [Cochliobolus sativus ND90Pr]
gi|452001764|gb|EMD94223.1| hypothetical protein COCHEDRAFT_1202004 [Cochliobolus
heterostrophus C5]
Length = 171
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG+ +G++ V I + I G + G+ ++V + +V+RP+KGE++ VT V +
Sbjct: 35 EGSSTGKYTI-VCILDSFDISDGKVMPGSGSAEYVVHYKAVVWRPYKGEVMDGIVTSVLR 93
Query: 65 MGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121
GF + G++Q F +IP +++ P T DG I+K + +KI G + +V
Sbjct: 94 TGFFVDCGSLQAFVGRSMIPAEIKFDANATPPQWTDDGEQVIEKGTNIRIKIKGLRSEVD 153
Query: 122 EI 123
++
Sbjct: 154 KM 155
>gi|300706401|ref|XP_002995470.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
gi|239604588|gb|EEQ81799.1| hypothetical protein NCER_101623 [Nosema ceranae BRL01]
Length = 155
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 15/123 (12%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIR-NGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
K +EG+C+ G+ +++ + + +G + NG +F ++ + +V +PFKGE + A V
Sbjct: 32 KTIEGSCNDS-GYVISVLEIDDVSEGTVSLNGAT--SFKIKYKALVLKPFKGETMEASVV 88
Query: 61 MVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDV 120
+NKMG A G + +F + +PS G + KD + LKIIGT++D
Sbjct: 89 EINKMGVFASVGPLTVF--------VSNHQIPSEIQEGG---LLKDSIVRLKIIGTKIDS 137
Query: 121 TEI 123
++I
Sbjct: 138 SKI 140
>gi|294939334|ref|XP_002782418.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
gi|239894024|gb|EER14213.1| DNA-directed RNA polymerase II, putative [Perkinsus marinus ATCC
50983]
Length = 149
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 3 DVEGTCSGRH-GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
++EG S H G V I K I++GT + V Q I+FRPFK E++ V+
Sbjct: 33 ELEGNLSKNHDGTIVHIINIVDKSKPKIQDGTGMALVNVVFQGIIFRPFKNEVMDCWVSE 92
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQTGDLP-SYTTSDGSVKIQKDCE 108
V+K+GF A G +++F +PDD+ + P Y+ +D +V IQ+D E
Sbjct: 93 VSKLGFFAYFGPMKVFVSRSSMPDDVIFRETATPVCYSDADQTVVIQQDSE 143
>gi|19074596|ref|NP_586102.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19069238|emb|CAD25706.1| DNA-DIRECTED RNA POLYMERASE II 19kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449329612|gb|AGE95883.1| DNA-directed RNA polymerase II 19kDa subunit [Encephalitozoon
cuniculi]
Length = 155
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 15/124 (12%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKG-LIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+ VEG+CS G+ V + + I + +I G + F V+ + + +P KGE++ A V
Sbjct: 31 LSKVEGSCSSS-GYVVMVLSIDEISESRIILTGETI--FTVKYKALTLKPLKGEVIDANV 87
Query: 60 TMVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
NKMG A G + +F + +P++ + +I K+ + LKIIGT++D
Sbjct: 88 VETNKMGVFASVGPLTVF--------ISNHQIPNFLLEN---EITKNVMIRLKIIGTKID 136
Query: 120 VTEI 123
T I
Sbjct: 137 STRI 140
>gi|342876142|gb|EGU77800.1| hypothetical protein FOXB_11664 [Fusarium oxysporum Fo5176]
Length = 171
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 25/123 (20%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + F ++I A I +G I G + F V + +V+RPFKGE
Sbjct: 31 LKDVEGTCAGSY-FIISIMDAFEISEGRILPGLGMAEFTVGYRAVVWRPFKGE------- 82
Query: 61 MVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDV 120
LIP D++ P T++ I+ + +KIIGT+ +V
Sbjct: 83 -----------------TLIPSDVKYDPNATPPQFTNNEDTSIEPQTHVRVKIIGTRTEV 125
Query: 121 TEI 123
E+
Sbjct: 126 GEM 128
>gi|452987401|gb|EME87156.1| hypothetical protein MYCFIDRAFT_89029 [Pseudocercospora fijiensis
CIRAD86]
Length = 170
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
D++G G + I G + I + ++ GT + +++ + I++RPF+GE++ VT V
Sbjct: 33 DMQGNIEGTE-IVIQIIGVDDISEPVLVPGTGMAKYVLSYRAIIWRPFRGEVVDGLVTTV 91
Query: 63 NKMGFLAEAGAVQIF---CLIPDDMELQT-GDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
GF E GA+ +F +IP +++ G PS+T D + +I++ ++ L++ G +
Sbjct: 92 VSNGFFVEVGAMTVFVSRSMIPSNLKYTVEGSTPSFT--DNNDQIERGTQIRLRLKGIR 148
>gi|396472452|ref|XP_003839119.1| hypothetical protein LEMA_P027920.1 [Leptosphaeria maculans JN3]
gi|312215688|emb|CBX95640.1| hypothetical protein LEMA_P027920.1 [Leptosphaeria maculans JN3]
Length = 1244
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
++ EG+ +G++ V I A I G + G+ ++V + IV+RP+KGE++ V
Sbjct: 31 LQKEEGSSTGKYAI-VCILDAFEISDGKVMPGSGSAEYVVHYKAIVWRPYKGEVVDGVVV 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V + GF + G++Q+F +IP +++ P T DG I+K + +KI G +
Sbjct: 90 SVLRTGFFVDCGSLQVFVGRHMIPSEVKFDANATPPQWTDDGEQVIEKGTNIRIKIKGLR 149
Query: 118 VDVTEIEK 125
+E+EK
Sbjct: 150 ---SEVEK 154
>gi|302925647|ref|XP_003054136.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735077|gb|EEU48423.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 147
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 25/123 (20%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEGTC+G + F ++I I +G I G L F V + +V+RPFKGE
Sbjct: 31 LTDVEGTCAGSY-FIISIMDTFDISEGRILPGNGLAEFTVGYRAVVWRPFKGE------- 82
Query: 61 MVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDV 120
LIP D++ P T++ I+ D + +KIIGT+ +V
Sbjct: 83 -----------------TLIPSDIKWDPNATPPQFTNNEDTVIEPDTHVRVKIIGTRTEV 125
Query: 121 TEI 123
E+
Sbjct: 126 GEM 128
>gi|429961557|gb|ELA41102.1| hypothetical protein VICG_01895 [Vittaforma corneae ATCC 50505]
Length = 154
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 66/124 (53%), Gaps = 16/124 (12%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKG-LIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+K VEGTC+ G+ +++ G + I +G ++ G + +F V Q +V +P GEI+ A +
Sbjct: 31 LKKVEGTCTSS-GYIISVLGIDGISEGKVLLTGHI--SFDVEYQAVVLKPTSGEIVDAPI 87
Query: 60 TMVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
KMG+ A G + IF + +P+ T + + + + LKIIGT++D
Sbjct: 88 VSSTKMGYFASVGPLSIF--------ISNYQIPNTTLEE----LGNNSVVRLKIIGTKID 135
Query: 120 VTEI 123
T++
Sbjct: 136 STKV 139
>gi|452848074|gb|EME50006.1| hypothetical protein DOTSEDRAFT_122159 [Dothistroma septosporum
NZE10]
Length = 167
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 6/126 (4%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
D+EGT G + I + + + ++ GT + + V + +V+RPF+GE++ VT
Sbjct: 32 SDLEGTIEGTL-MIIQIIEIDEVSEPMLVPGTGMAKYTVSYRALVWRPFRGEVVDGLVTS 90
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQT-GDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V GF E G + +F +IP +++ G PS+ T + I+KD ++ ++I G +
Sbjct: 91 VVSNGFFVEVGGMSVFVARAMIPSNLKYTVEGSTPSF-TDNSEQNIEKDTQVRVRIKGIR 149
Query: 118 VDVTEI 123
++ ++
Sbjct: 150 GEIGQM 155
>gi|169602421|ref|XP_001794632.1| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
gi|160706165|gb|EAT87969.2| hypothetical protein SNOG_04209 [Phaeosphaeria nodorum SN15]
Length = 188
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 21/139 (15%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG+ +G++ V I A I G + G+ ++V + IV+RP+KGE++ VT V +
Sbjct: 35 EGSSTGKYTI-VCILDAFDISDGKVLPGSGHAEYIVHYKAIVWRPYKGEVMDGVVTSVLR 93
Query: 65 MGFLAEAGAVQIFC--------------------LIPDDMELQTGDLPSYTTSDGSVKIQ 104
GF + G++Q F +IP D+ P T +G I+
Sbjct: 94 TGFFVDCGSLQAFVGRNVRMPCASCRYPSTNTTQMIPSDITFDANATPPQWTDNGEQVIE 153
Query: 105 KDCELWLKIIGTQVDVTEI 123
K + +KI G + +V ++
Sbjct: 154 KGTNIRIKIKGLRSEVDKM 172
>gi|403341587|gb|EJY70102.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
gi|403342420|gb|EJY70530.1| DNA-directed RNA polymerase II subunit Rpb7, putative [Oxytricha
trifallax]
Length = 174
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 6 GTCSGRHGFAVAIT--GAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
GTCSG +G+ + I + I G I++ T V + V+ + +VFRPF+GE+L V +
Sbjct: 36 GTCSGTYGYIIQIIQMKPQDISDGRIQDTTGDVIYKVKFKALVFRPFRGEVLDGEVIDIT 95
Query: 64 KMGFLAEAGAVQIFC 78
GF+ E+G ++ F
Sbjct: 96 DNGFMIESGPLKSFI 110
>gi|389641835|ref|XP_003718550.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|351641103|gb|EHA48966.1| hypothetical protein MGG_17442 [Magnaporthe oryzae 70-15]
gi|440469750|gb|ELQ38847.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
Y34]
gi|440482256|gb|ELQ62763.1| DNA-directed RNA polymerase II subunit RPB7 [Magnaporthe oryzae
P131]
Length = 172
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ D EGTC G + +++ A I G I G + F V + +V+RPFKG+ + V
Sbjct: 31 LADTEGTCQGDF-YIISVMDAVDISPGKIVPGNAMAEFTVNYRAVVWRPFKGQTVDGIVD 89
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
VN+ GF G +++F + P D+ ++ S + D + WL +GT
Sbjct: 90 SVNQHGFFIAVGPLRVFITKQMCPPDVIYD---------ANASPPVFTDKDTWLVDVGT 139
>gi|407929414|gb|EKG22244.1| hypothetical protein MPH_00423 [Macrophomina phaseolina MS6]
Length = 171
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+DVEG + + + + ++ +G + GT + + V + IV+RPFKGEIL V+
Sbjct: 32 QDVEGIQIENY-YIICVMDSQDKSEGRVLPGTGYIEYTVHFKAIVWRPFKGEILDGIVSA 90
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
V GF + G + +F +IP ++ P T + I+K + +KI G +
Sbjct: 91 VVDSGFFVDVGPLNVFVASSMIPSSIKYDGNATPPQWTDNADQVIEKGTHIRVKIKGIRT 150
Query: 119 DV 120
++
Sbjct: 151 EL 152
>gi|326472096|gb|EGD96105.1| RNA polymerase II subunit 7 [Trichophyton tonsurans CBS 112818]
gi|326477039|gb|EGE01049.1| RNA polymerase II subunit 7 [Trichophyton equinum CBS 127.97]
Length = 160
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G I G+ L + + + IV++PFKGE
Sbjct: 31 LDDVEGICTGDY-YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVWKPFKGE------- 82
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
G AE G + +F LIP +++ P T + I+ L +K+IG +
Sbjct: 83 --TNQGIFAEVGPLTVFVSKHLIPPEIKWDPDSTPPQYTDNADQVIETGTNLRIKLIGLR 140
Query: 118 VDV 120
DV
Sbjct: 141 NDV 143
>gi|330038755|ref|XP_003239691.1| RNA polymerase II RPB7 subunit-like protein [Cryptomonas
paramecium]
gi|327206615|gb|AEA38793.1| RNA polymerase II RPB7 subunit-like protein [Cryptomonas
paramecium]
Length = 175
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 4 VEGTCSGRHGFAVAITGAESI-GKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+EG G G VAI KG I G+ + + + + I F+ FKGE+L + +T V
Sbjct: 34 IEGIKLGIFGIIVAIIKLNKFWKKGKIITGSPFILYNISYKAITFKVFKGEVLDSILTNV 93
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQK-DCELWLKIIGTQV 118
++GF E+G +QIF IPD+ E + + +KI K D + ++IIG +
Sbjct: 94 TELGFFCESGPLQIFVSKQFIPDEYEYDNLN-RCFQNRFSRIKIIKNDTIVRVRIIGLRY 152
Query: 119 D 119
D
Sbjct: 153 D 153
>gi|302506941|ref|XP_003015427.1| DNA-directed RNA polymerase complex II subunit Rpb7 [Arthroderma
benhamiae CBS 112371]
gi|291178999|gb|EFE34787.1| DNA-directed RNA polymerase complex II subunit Rpb7 [Arthroderma
benhamiae CBS 112371]
Length = 297
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ DVEG C+G + + V + I +G I G+ L + + + IV++PFKGE
Sbjct: 31 LDDVEGICTGDY-YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVWKPFKGE------- 82
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
G AE G + +F LIP +++ P T + I+ L +K+IG +
Sbjct: 83 --TNQGIFAEVGPLTVFVSKHLIPPEIKWDPDSTPPQYTDNADQVIETGTNLRIKLIGLR 140
Query: 118 VDV 120
DV
Sbjct: 141 NDV 143
>gi|398411600|ref|XP_003857138.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici IPO323]
gi|339477023|gb|EGP92114.1| hypothetical protein MYCGRDRAFT_66842 [Zymoseptoria tritici IPO323]
Length = 167
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
D+EGT G + I E I + ++ GT + + + + IV+RPF+GE++ V+ V
Sbjct: 33 DIEGTIEGTL-MVIRIVDVEDISEPKLQPGTGMAVYHLHYRAIVWRPFRGEVVDGLVSSV 91
Query: 63 NKMGFLAEAGAVQIF---CLIPDDMEL-QTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
GF + GA+ +F +IP ++ G P++T + +++ ++ L+I G +
Sbjct: 92 VNNGFFVDVGALSVFVSKAMIPSTLKYTMEGSTPAFTDNQDQ-SVERGTQVRLRIKGIR 149
>gi|255563208|ref|XP_002522607.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
gi|223538083|gb|EEF39694.1| DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
[Ricinus communis]
Length = 176
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A+T ESIG+G +R T V F V I F+ F+GEIL V V K G G
Sbjct: 47 GYYLAVTTLESIGEGKVREHTGDVLFPVVFNGITFKIFRGEILEGVVHKVLKHGVFIRCG 106
Query: 73 AVQ---IFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
++ + C+ D G+ P + +D + KI+KD + +IGT+
Sbjct: 107 PIENIYLSCMKMPDYHYVPGENPVF-LNDKTSKIEKDVVVRFIVIGTK 153
>gi|378756379|gb|EHY66403.1| hypothetical protein NERG_00043 [Nematocida sp. 1 ERTm2]
Length = 170
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+ +VEG C G+ ++I +++ I + T TFL + P K E+ A V
Sbjct: 31 VSEVEGKCMAECGYIISIISIDNLYTTEIDSATGSGTFLAEYSALTLFPKKNEVANAVVH 90
Query: 61 MVNKMGFLAEAGAVQIFCLIP--DDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
+NKMG G + +F I ++ G S DG I KD + LK+IG ++
Sbjct: 91 EINKMGVFCYIGPLSVFISIHQLSGQFIEAGAHSSIIQHDGGSAIVKDSIVRLKLIGVKI 150
Query: 119 DVTEI 123
+ T+I
Sbjct: 151 EPTKI 155
>gi|320592229|gb|EFX04668.1| RNA polymerase 2 subunit 7 [Grosmannia clavigera kw1407]
Length = 144
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 25/123 (20%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
+KDVEGTC+G + + ++I I G I G L F V + +V+RPFKGE
Sbjct: 31 LKDVEGTCAGNY-YIISIMDTFDISAGKILPGNGLAEFTVGYRAVVWRPFKGE------- 82
Query: 61 MVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDV 120
+IP ++ P T + +I+ + +KI+GT+ +V
Sbjct: 83 -----------------TMIPSQVKYDPNATPPQFTDNEDYRIEPGTHIRVKIMGTRSEV 125
Query: 121 TEI 123
E+
Sbjct: 126 GEM 128
>gi|224102153|ref|XP_002312568.1| predicted protein [Populus trichocarpa]
gi|222852388|gb|EEE89935.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A++ ESIG+G +R T V F V I F+ F+GEIL V V K G L G
Sbjct: 47 GYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCG 106
Query: 73 AVQ---IFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
++ + C+ D G+ P + +D + KI+KD + ++GT+
Sbjct: 107 PIENIYLSCMKMPDYRYVPGENPVF-LNDKTSKIEKDVVVRFVVLGTK 153
>gi|449432628|ref|XP_004134101.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449432630|ref|XP_004134102.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504102|ref|XP_004162253.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449504105|ref|XP_004162254.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 190
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 12 HGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEA 71
HG+ +++T SIGKG+++N + V+F + C F PF+GEIL V + + G L +
Sbjct: 46 HGYFLSVTSLRSIGKGIVKNESQCVSFPITFICRTFLPFEGEILHGVVRHIFQRGLLLKC 105
Query: 72 GAVQIFCLIPDDM---ELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
G ++ L M + G+ P +++ + + I D + ++G +
Sbjct: 106 GPIKYVFLSARKMPTYQYVGGENPVFSSKEFAT-IGNDVVVRFSVLGVR 153
>gi|258575729|ref|XP_002542046.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237902312|gb|EEP76713.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 199
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 43 QCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDG 99
+ IV++PFKGE + A VT V G AE G + +F LIP +++ P T +
Sbjct: 3 RAIVWKPFKGETVDAIVTSVKNQGIFAEVGPLTVFVSKHLIPPEIKWDPDATPPQYTDNA 62
Query: 100 SVKIQKDCELWLKIIGTQVDV 120
I+K L +K+IG + DV
Sbjct: 63 DQVIEKGTNLRIKLIGLRNDV 83
>gi|219118585|ref|XP_002180062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408319|gb|EEC48253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 181
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 2 KDVEGTCSGRHGFAVAI--TGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+ VEG +G+ V + + I G+I T V F V+ ++ RPF E+L A V
Sbjct: 32 EHVEGLALANYGYVVNVIEVPEDQIRSGIIEYDTGNVVFTVKYTALLLRPFLNEVLDAVV 91
Query: 60 TMVNKMGFLAEAGAVQIFC---LIPDDM-ELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
T N +GF A G ++IF +P+DM + ++ + D V I + LKI G
Sbjct: 92 TQCNALGFFAFCGPLRIFVSKHSMPEDMFHGFNHEQDAWVSDDKEVVIAAGSGVRLKIKG 151
Query: 116 TQVD 119
V+
Sbjct: 152 RTVE 155
>gi|453089186|gb|EMF17226.1| DNA-directed RNA polymerase II subunit RPB7 [Mycosphaerella
populorum SO2202]
Length = 171
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
+D+EG G V I + I + ++ GT + + + + IV+RPF+GE++ VT
Sbjct: 32 EDMEGKVEGTE-MIVQIIEIDEISEPVLVPGTGMAKYTLSYRAIVWRPFRGEVVDGMVTS 90
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQT-GDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V GF + GA+ +F +IP ++ G PS+ T + I++ ++ L+I G +
Sbjct: 91 VVNNGFFVDVGALSVFVSKAMIPGALKYTVEGSTPSF-TDNSDQTIERGTQVRLRIKGIR 149
>gi|326527317|dbj|BAK04600.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 8 CSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGF 67
S HG+ +A+ ++I +G +R T V F V CI RP KGEIL V + K G
Sbjct: 43 ASNEHGYYIAVNELKTISEGKVRELTGDVLFPVTFTCITQRPMKGEILVGSVEKILKHGV 102
Query: 68 LAEAGAVQIFCLIP---DDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
++G ++ L D + G+ P + K+++D + K++G
Sbjct: 103 FLKSGPIESIFLSEKSMSDYKYMGGENPMFMKDHS--KLERDTAVRFKVMG 151
>gi|387594745|gb|EIJ89769.1| hypothetical protein NEQG_00539 [Nematocida parisii ERTm3]
gi|387596407|gb|EIJ94028.1| hypothetical protein NEPG_00693 [Nematocida parisii ERTm1]
Length = 170
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
M +VEG C G+ ++I +++ + + + TFL + P K E+ A V
Sbjct: 31 MSEVEGKCKADCGYIISIISIDNLYTTEVDSTSGSATFLAEYSALTLFPKKNEVANAVVH 90
Query: 61 MVNKMGFLAEAGAVQIFCLIP--DDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
+NKMG G +F I ++ G S DG I KD + L++IG ++
Sbjct: 91 EINKMGIFCFIGPFSVFISIHQLSGQFIEAGAHSSIIQHDGGSVIVKDSIVRLRLIGVKI 150
Query: 119 DVTEI 123
+ T+I
Sbjct: 151 EPTKI 155
>gi|297737162|emb|CBI26363.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A+T E+IG+G +R + V F V C+ F+ F+GEIL V V K G + G
Sbjct: 112 GYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCG 171
Query: 73 AVQ---IFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V+ + C D G+ P + S KI+KD + ++GT+
Sbjct: 172 PVENIYLSCQKMPDYRYVPGENPVFLNEKLS-KIEKDVVVRFIVMGTK 218
>gi|399950026|gb|AFP65682.1| RNA polymerase II RPB7 subunit-like protein [Chroomonas
mesostigmatica CCMP1168]
Length = 174
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 1 MKDVEGTCSGRHGFAVAITGA-ESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+ VEGT +G G + IT ++ G+G G + + + + FR FKGE+ A V
Sbjct: 31 LSSVEGTKAGPFGLIIMITEIFDNWGEGKFLIGCPSALYCLTYKALTFRAFKGEVFDAVV 90
Query: 60 TMVNKMGFLAEAGAVQIF 77
T V +GF +EAG +QIF
Sbjct: 91 TQVTNLGFFSEAGFLQIF 108
>gi|402467510|gb|EJW02798.1| hypothetical protein EDEG_00255 [Edhazardia aedis USNM 41457]
Length = 157
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 17/121 (14%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
K V GTCS +G + + +I G I T V F V + ++ +P K EI+ A +
Sbjct: 32 KTVVGTCSQENGLIIMVLDILTIDGGKIST-TGHVVFKVNYKALLLKPIKSEIIDAPIVD 90
Query: 62 VNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVK---IQKDCELWLKIIGTQV 118
VN MG EAG + IF + S+ + K ++K+ +L +KIIGT++
Sbjct: 91 VNAMGVFCEAGPLTIF-------------VSSFHIKEKIWKNNELKKNDKLRIKIIGTKI 137
Query: 119 D 119
D
Sbjct: 138 D 138
>gi|70983610|ref|XP_747332.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|66844958|gb|EAL85294.1| RNA polymerase II subunit 7 [Aspergillus fumigatus Af293]
gi|159123662|gb|EDP48781.1| RNA polymerase II subunit 7 [Aspergillus fumigatus A1163]
Length = 139
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG C+G H F + + IG+G + G+ + ++ + I+++PF+GE + A VT V
Sbjct: 35 EGRCTGDH-FVICVMDMVDIGEGRVLPGSGQAEYTIKYRAIIWKPFRGETVDAIVTSVKP 93
Query: 65 MGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSV 101
G AG + +F I L T +P+ ++ G V
Sbjct: 94 TGIFTLAGPLSVF--IARKYLLSTRIMPTRSSKRGPV 128
>gi|225432916|ref|XP_002284221.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Vitis
vinifera]
gi|147822056|emb|CAN61549.1| hypothetical protein VITISV_043525 [Vitis vinifera]
Length = 177
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A+T E+IG+G +R + V F V C+ F+ F+GEIL V V K G + G
Sbjct: 47 GYFLAVTTLENIGEGKVRQHSGDVLFPVVFSCVTFKLFRGEILDGVVHKVLKHGVILRCG 106
Query: 73 AVQ---IFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V+ + C D G+ P + S KI+KD + ++GT+
Sbjct: 107 PVENIYLSCQKMPDYRYVPGENPVFLNEKLS-KIEKDVVVRFIVMGTK 153
>gi|209882951|ref|XP_002142910.1| DNA-directed RNA polymerase II subunit RPB7 [Cryptosporidium muris
RN66]
gi|209558516|gb|EEA08561.1| DNA-directed RNA polymerase II subunit RPB7, putative
[Cryptosporidium muris RN66]
Length = 176
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 4 VEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
VEG G+ V + G I++GT L+ ++ Q IV+RP KGE++ V VN
Sbjct: 34 VEGQWITSFGYVVCVVRILLRQPGRIQDGTGLIIVPIKYQAIVYRPMKGEVIDGTVESVN 93
Query: 64 KMGFLAEAGAVQ-IF---CLIPDDMELQTG----DLPSYTTSDGSVKIQKDCELWLKIIG 115
++G + G ++ +F +P+++ +G +Y S ++I+++ E+ +++ G
Sbjct: 94 ELGIIVNCGPLKRVFVSQSALPENISYSSGVDGSTARAYLDSKSQLQIKQNTEVRVRLRG 153
Query: 116 TQ 117
Sbjct: 154 VN 155
>gi|428178976|gb|EKX47849.1| DNA-directed RNA polymerase II subunit RPB7 [Guillardia theta
CCMP2712]
Length = 183
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 3 DVEGTCSGRHG-----FAVAITGAES--IGKGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
+VE +CS R+G F + + E + G+ GT + F V IVF+PFKGE+L
Sbjct: 34 EVENSCSERYGIVLKVFNIDVDNLEGKIMPTGMHPGGTAV--FTVPYDAIVFKPFKGEVL 91
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC----LIPDDMELQ-TGD--LPSYTTSDGSVKIQKDCE 108
V G + G +Q+F L D+ L+ GD P + + D + I
Sbjct: 92 NGVVKSSAAQGLFVQCGPLQVFIAKANLADDNNGLEWRGDNTPPCWMSRDERIVIGDKTH 151
Query: 109 LWLKIIGTQV 118
L L+I+GT++
Sbjct: 152 LRLRILGTRI 161
>gi|242086985|ref|XP_002439325.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
gi|241944610|gb|EES17755.1| hypothetical protein SORBIDRAFT_09g004460 [Sorghum bicolor]
Length = 175
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 8 CSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGF 67
S HG+ VA++ ++I +G +R T V F V CI +P KGE++ V + K G
Sbjct: 43 ASKEHGYYVAVSQLKAISEGKVRELTGDVLFPVSFTCITLKPMKGEVMVGHVDRILKHGV 102
Query: 68 LAEAGAVQIFCLIPDDME--LQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
++G V+ L M G + +D S K++KD + K++G
Sbjct: 103 FLKSGPVESIFLAEKSMSDYKYIGGENAMFMNDHS-KLEKDTAVRFKVLG 151
>gi|449297101|gb|EMC93119.1| hypothetical protein BAUCODRAFT_228826 [Baudoinia compniacensis
UAMH 10762]
Length = 171
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTM 61
++ EG +G +AI E + + + G+ L + V + IV+RPF+GE++ V+
Sbjct: 32 REQEGKNTGTM-LIIAIIDIEDVSEPKVVPGSGLAQYDVSFRAIVWRPFRGEVVDGLVSS 90
Query: 62 VNKMGFLAEAGAVQIF---CLIPDDMELQT-GDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
V GF + G + +F LIP ++ G PSYT + I++ ++ L+I G +
Sbjct: 91 VISGGFFVDVGGLAVFVSKALIPPQLKFSVEGSAPSYTDNVDQT-IERGTQVRLRIKGIR 149
Query: 118 VDVTEI 123
++ ++
Sbjct: 150 AEMGQM 155
>gi|357134557|ref|XP_003568883.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Brachypodium distachyon]
Length = 175
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 8 CSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGF 67
S HG+ +A+ + I +G +R T V F V CI +P KGEIL V + K G
Sbjct: 43 ASKEHGYYIAVNELKEISEGKVRELTGDVLFPVTFTCITLKPMKGEILVGSVEKILKHGV 102
Query: 68 LAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
++G ++ L +D + G+ P + K++KD L K +G
Sbjct: 103 FLKSGPIENVFLSEKTMNDYKYIGGENPMFMKDHS--KLEKDTVLRFKAMG 151
>gi|118487294|gb|ABK95475.1| unknown [Populus trichocarpa]
Length = 176
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A++ ESIG+G +R T V F V I F+ FKGEIL V V K G L G
Sbjct: 47 GYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCG 106
Query: 73 AVQIFCLIPD---DMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
++ L D G+ P + +D + KI+KD + ++GT+
Sbjct: 107 PIENIYLSSMKMLDYRYVPGENPVF-LNDKTSKIEKDVVVRFVVLGTK 153
>gi|224107923|ref|XP_002314654.1| predicted protein [Populus trichocarpa]
gi|222863694|gb|EEF00825.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A++ ESIG+G +R T V F V I F+ FKGEIL V V K G L G
Sbjct: 64 GYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCG 123
Query: 73 AVQIFCLIPD---DMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
++ L D G+ P + +D + KI+KD + ++GT+
Sbjct: 124 PIENIYLSSMKMLDYRYVPGENPVF-LNDKTSKIEKDVVVRFVVLGTK 170
>gi|357134424|ref|XP_003568817.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
1 [Brachypodium distachyon]
gi|357134426|ref|XP_003568818.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like isoform
2 [Brachypodium distachyon]
Length = 175
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 8 CSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGF 67
S HG+ +A+ + I +G +R T V F V CI +P KGEIL V + K G
Sbjct: 43 ASKEHGYYIAVNELKEISEGKVRELTGDVLFPVTFTCITLKPMKGEILVGSVDKILKHGM 102
Query: 68 LAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
++G ++ L +D + G+ P + K++KD + +++G
Sbjct: 103 FLKSGPIENIFLSEKTMNDYKYIGGENPMFMKDHS--KLEKDTIVRFRVMG 151
>gi|126644185|ref|XP_001388228.1| DNA-directed RNA polymerase II [Cryptosporidium parvum Iowa II]
gi|126117301|gb|EAZ51401.1| DNA-directed RNA polymerase II, putative [Cryptosporidium parvum
Iowa II]
Length = 178
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 66/122 (54%), Gaps = 8/122 (6%)
Query: 4 VEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
VEG + +G+ V + G +++ T L+ V+ Q IV+RP KGE++ V VN
Sbjct: 34 VEGQRAPPYGYVVCVIKIILKQPGRVQDSTGLIIVPVKYQAIVYRPIKGEVVDGVVESVN 93
Query: 64 KMGFLAEAGAVQ-IF---CLIPDDMELQTG-DLPS---YTTSDGSVKIQKDCELWLKIIG 115
++G + + G ++ +F +P++M ++G D S Y + ++I+++ ++ L++ G
Sbjct: 94 ELGVIVDCGPLKRVFVSQSALPENMVYKSGIDGQSSRIYIDTKTQIQIKQNSQVRLRLRG 153
Query: 116 TQ 117
Sbjct: 154 VN 155
>gi|224107919|ref|XP_002314653.1| predicted protein [Populus trichocarpa]
gi|222863693|gb|EEF00824.1| predicted protein [Populus trichocarpa]
Length = 189
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%)
Query: 9 SGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFL 68
S HG+ +A+T +SIGKG + N + V F V +C F P KGEIL V + G L
Sbjct: 43 SKDHGYFLAVTNLKSIGKGEVVNKSGDVLFHVEFKCRTFMPMKGEILQGVVHRTFRHGVL 102
Query: 69 AEAGAVQIFCL 79
G V+ L
Sbjct: 103 LRCGPVKYIFL 113
>gi|218196310|gb|EEC78737.1| hypothetical protein OsI_18944 [Oryza sativa Indica Group]
Length = 175
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 8 CSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGF 67
S HG+ +A++ ++I +G +R T V F V CI +P KGEIL V + K G
Sbjct: 43 ASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGV 102
Query: 68 LAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
++G ++ L D + G+ P + K++KD + K++G
Sbjct: 103 FLKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHS--KLEKDTAVRFKVMG 151
>gi|57863806|gb|AAS98454.2| putative receptor kinase [Oryza sativa Japonica Group]
Length = 715
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 9 SGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFL 68
S HG+ +A++ ++I +G +R T V F V CI +P KGEIL V + K G
Sbjct: 79 SKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVF 138
Query: 69 AEAGAVQIFCLIP---DDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
++G ++ L D + G+ P + K++KD + K++G
Sbjct: 139 LKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHS--KLEKDTAVRFKVMG 186
>gi|222630667|gb|EEE62799.1| hypothetical protein OsJ_17602 [Oryza sativa Japonica Group]
Length = 796
Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 9 SGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFL 68
S HG+ +A++ ++I +G +R T V F V CI +P KGEIL V + K G
Sbjct: 44 SKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVF 103
Query: 69 AEAGAVQIFCLIP---DDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
++G ++ L D + G+ P + K++KD + K++G
Sbjct: 104 LKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHS--KLEKDTAVRFKVMG 151
>gi|351724841|ref|NP_001238607.1| uncharacterized protein LOC100527862 [Glycine max]
gi|255633396|gb|ACU17055.1| unknown [Glycine max]
Length = 180
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A+T E IG+G +R T V F V I F+ FKGEIL V V K G G
Sbjct: 47 GYFLAVTTLEKIGEGKVRQHTGDVLFPVVFNVITFKFFKGEILEGVVHKVLKHGVFMRCG 106
Query: 73 AVQIFCLIPDDMELQTGDLPSYT---------TSDGSVKIQKDCELWLKIIGTQ 117
++ ++ L +P Y +D KI KD + +IGT+
Sbjct: 107 PIE-------NVYLSNLKMPDYRYVPGENACFMNDKMSKIGKDVTVRFSVIGTK 153
>gi|226493930|ref|NP_001150375.1| LOC100284005 [Zea mays]
gi|194705372|gb|ACF86770.1| unknown [Zea mays]
gi|195638760|gb|ACG38848.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|195658229|gb|ACG48582.1| DNA-directed RNA polymerase II 19 kDa polypeptide [Zea mays]
gi|413944600|gb|AFW77249.1| DNA-directed RNA polymerase II polypeptide isoform 1 [Zea mays]
gi|413944601|gb|AFW77250.1| DNA-directed RNA polymerase II polypeptide isoform 2 [Zea mays]
gi|413944602|gb|AFW77251.1| DNA-directed RNA polymerase II polypeptide isoform 3 [Zea mays]
Length = 175
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 8 CSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGF 67
S HG+ +A+ ++I +G +R T V F V CI +P KGE++ V + K G
Sbjct: 43 ASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGV 102
Query: 68 LAEAGAVQIFCLIPDDME--LQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
++G V+ L M G + +D S K++KD + K++G
Sbjct: 103 FLKSGPVESIFLAEKSMSNYKYIGGENAMFMNDHS-KLEKDTAVRFKVLG 151
>gi|402582187|gb|EJW76133.1| hypothetical protein WUBG_12956 [Wuchereria bancrofti]
Length = 111
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 13/71 (18%)
Query: 66 GFLAEAGAVQIFC------------LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLK 112
GF+ G V +FC IP DME + + P Y T+D SV I++D E+ +K
Sbjct: 24 GFVPYVGMVGLFCDIGPLSCFVSRHCIPPDMEFEPNSNPPCYKTADESVVIKQDDEIRVK 83
Query: 113 IIGTQVDVTEI 123
+IGT+VD ++I
Sbjct: 84 LIGTRVDASDI 94
>gi|398411157|ref|XP_003856922.1| hypothetical protein MYCGRDRAFT_31431, partial [Zymoseptoria
tritici IPO323]
gi|339476807|gb|EGP91898.1| hypothetical protein MYCGRDRAFT_31431 [Zymoseptoria tritici IPO323]
Length = 223
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 6 GTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKM 65
G C G H S +GLI +GT +V V + IVFRPFKGEI+ A +T N
Sbjct: 38 GLCLGFHSLV-------STSEGLIGHGTGIVNVNVDFRLIVFRPFKGEIIRATITQSNPT 90
Query: 66 GFLAEAGAVQIFCLIPDDM 84
G + + P+ +
Sbjct: 91 GIYLSVDFYEDLVVPPETL 109
>gi|302783046|ref|XP_002973296.1| hypothetical protein SELMODRAFT_98932 [Selaginella moellendorffii]
gi|302789680|ref|XP_002976608.1| hypothetical protein SELMODRAFT_105350 [Selaginella moellendorffii]
gi|300155646|gb|EFJ22277.1| hypothetical protein SELMODRAFT_105350 [Selaginella moellendorffii]
gi|300159049|gb|EFJ25670.1| hypothetical protein SELMODRAFT_98932 [Selaginella moellendorffii]
Length = 175
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
M+D++ CS HG+ VA T + G+IR + V++ V +C+VF+ K EI+ +
Sbjct: 36 MEDLQ--CSREHGYYVAPTTLSKVSGGMIRE-SGGVSYKVDFKCMVFKLIKNEIVELEIE 92
Query: 61 MVNKMGFLAEAGAVQIFCLIPDDMELQTG------DLPSYTTSDGSVKIQKDCELWLKII 114
V + G A G L L TG + P + SDG V I K C + KI+
Sbjct: 93 NVKQSGAEASCGPYTAIFL---HHSLMTGFVYSNENGPCFKNSDGVV-ISKGCAVRAKIL 148
Query: 115 GTQ 117
G Q
Sbjct: 149 GGQ 151
>gi|322705624|gb|EFY97208.1| putative DNA-directed RNA polymerase II chain Rpb7 [Metarhizium
anisopliae ARSEF 23]
Length = 128
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
+KDVEGTC+G + + ++I I +G I G L F V + +V+RPFKGE
Sbjct: 31 LKDVEGTCAGSY-YIISIMDTFDISEGRILPGNGLAEFTVGYRAVVWRPFKGETF 84
>gi|167517525|ref|XP_001743103.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778202|gb|EDQ91817.1| predicted protein [Monosiga brevicollis MX1]
Length = 174
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 7/127 (5%)
Query: 2 KDVEGTCSGRHGFAVAITGAESIGKG--LIRNGTVLVTFLVRCQCIVFRPFKGEILGAGV 59
+VE HG+ +A+ + I +G L G +L F V ++ RP +++ V
Sbjct: 32 SEVECKVHRSHGYVLAVIKIDRISEGRILFNRGEIL--FNVTYTAVILRPVPKQVIDTMV 89
Query: 60 TMVNKMGFLAEAGAVQIF---CLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116
T VN G G + F IPD + P Y ++ + I+ + + +KII
Sbjct: 90 TSVNNRGIFVSIGPLTAFVSNSWIPDMTFDSDANPPRYISAKDGITIEPNDGVRVKIIAV 149
Query: 117 QVDVTEI 123
++ +I
Sbjct: 150 RIAAQDI 156
>gi|452990025|gb|EME89780.1| hypothetical protein MYCFIDRAFT_213792 [Pseudocercospora
fijiensis CIRAD86]
Length = 224
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 6 GTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKM 65
G C G H S +GLI +GT +V V + IVFRPFKGEI+ A +T N
Sbjct: 43 GLCVGFHSLV-------SASEGLIGHGTGIVNVNVDFRLIVFRPFKGEIIRATITQSNMT 95
Query: 66 G 66
G
Sbjct: 96 G 96
>gi|388498028|gb|AFK37080.1| unknown [Medicago truncatula]
Length = 180
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A+T + IG+G +R T V F V + F+ FKGE+L V V K G G
Sbjct: 47 GYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIG 106
Query: 73 AVQIFCLIPDDME---LQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
++ L M G+ P Y + KI KD ++ + +IGT+
Sbjct: 107 PIENAYLSSSKMPGYVYVLGENP-YFMNQKMPKIAKDVKVRVVVIGTK 153
>gi|115462207|ref|NP_001054703.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|45267865|gb|AAS55764.1| putative RNA polymerase II [Oryza sativa Japonica Group]
gi|113578254|dbj|BAF16617.1| Os05g0157100 [Oryza sativa Japonica Group]
gi|125550915|gb|EAY96624.1| hypothetical protein OsI_18537 [Oryza sativa Indica Group]
gi|215692867|dbj|BAG88287.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630264|gb|EEE62396.1| hypothetical protein OsJ_17187 [Oryza sativa Japonica Group]
Length = 175
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 8 CSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGF 67
S HG+ +A++ ++I +G +R T V F V CI +P KGE+L V + K G
Sbjct: 43 ASKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPMKGEVLVGSVDKILKHGI 102
Query: 68 LAEAGAVQIFCL---IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115
++G ++ L D + G+ + K++KD + K++G
Sbjct: 103 FLKSGPIESIFLSEKTMSDFKYIGGENAVFMNEHS--KLEKDTVVRFKVMG 151
>gi|357441001|ref|XP_003590778.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
gi|355479826|gb|AES61029.1| DNA-directed RNA polymerase II subunit RPB7 [Medicago truncatula]
Length = 173
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A+T + IG+G +R T V F V + F+ FKGE+L V V K G G
Sbjct: 40 GYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIG 99
Query: 73 AVQIFCLIPDDME---LQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
++ L M G+ P Y + KI KD ++ + +IGT+
Sbjct: 100 PIENAYLSSSKMPGYVYVLGENP-YFMNQKMPKIAKDVKVRVVVIGTK 146
>gi|115462713|ref|NP_001054956.1| Os05g0224700 [Oryza sativa Japonica Group]
gi|113578507|dbj|BAF16870.1| Os05g0224700 [Oryza sativa Japonica Group]
Length = 782
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 9 SGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFL 68
S HG+ +A++ ++I +G +R T V F V CI +P KGEIL V + K G
Sbjct: 44 SKDHGYYIAVSELKAISEGKVRELTGDVLFPVTFTCITQKPTKGEILVGSVDKILKHGVF 103
Query: 69 AEAGAVQIFCLIP---DDMELQTGDLPSYTTSDGSVKIQKDCELWLK 112
++G ++ L D + G+ P + K++KD + K
Sbjct: 104 LKSGPIESIFLSEKTLSDYKYIGGENPMFMNDHS--KLEKDTAVRFK 148
>gi|217074784|gb|ACJ85752.1| unknown [Medicago truncatula]
Length = 180
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ +A+T + IG+G +R T V F V + F+ FKGE+L V V K G G
Sbjct: 47 GYFLAVTTLDKIGEGKVRQHTGDVLFPVVFNAVTFKIFKGEVLEGVVHKVLKHGVFMRIG 106
Query: 73 AVQIFCLIPDDME---LQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
++ L M G+ P Y + KI KD + + +IGT+
Sbjct: 107 PIENAYLSSSKMPGYVYVLGENP-YFMNQKMPKIAKDVKARVVVIGTK 153
>gi|388504534|gb|AFK40333.1| unknown [Lotus japonicus]
Length = 180
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ A+T + +G+G +R T V F V + F+ FKGEIL V V K G G
Sbjct: 47 GYFTAVTTLDKVGEGKVRQHTGDVLFPVVFNGVTFKLFKGEILEGVVHKVLKHGVFLRCG 106
Query: 73 AVQIFCLIP---DDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
++ L D G+ +Y ++ + KI KD + +IGT+
Sbjct: 107 PIEHVYLSNMKMADYRYFPGE-NAYFMNEKASKIAKDVTIRFVVIGTK 153
>gi|453089152|gb|EMF17192.1| DNA-directed RNA polymerase III 25 kd polypeptide [Mycosphaerella
populorum SO2202]
Length = 224
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 6 GTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKM 65
G C G H A +GLI +GT +V V + +VFRPFKGEI+ A +T ++
Sbjct: 43 GLCIGFHSLISA-------SEGLIGHGTGIVNVNVDFRLVVFRPFKGEIMRATITQSSQQ 95
Query: 66 GFLAEAGAVQIFCLIPDDM 84
G + + P+ +
Sbjct: 96 GIYLSVDFFEDLLVPPETL 114
>gi|42566796|ref|NP_193202.2| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|149944323|gb|ABR46204.1| At4g14660 [Arabidopsis thaliana]
gi|332658072|gb|AEE83472.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 178
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ VA+T + IG+G IR T V F V + F+ FKGEI+ V V K G G
Sbjct: 47 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106
Query: 73 AVQIFCL----IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARR 128
++ L +P D + G+ P + S +IQ + + + +IG + E+E+ +
Sbjct: 107 PIENVYLSYTKMP-DYKYIPGENPIFMNEKTS-RIQVETTVRVVVIG--IKWMEVEREFQ 162
Query: 129 EVGKQRAD 136
+ D
Sbjct: 163 ALASLEGD 170
>gi|2244822|emb|CAB10245.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
gi|7268172|emb|CAB78508.1| RNA polymerase II fifth largest subunit like protein [Arabidopsis
thaliana]
Length = 161
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ VA+T + IG+G IR T V F V + F+ FKGEI+ V V K G G
Sbjct: 30 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 89
Query: 73 AVQIFCL----IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARR 128
++ L +P D + G+ P + S +IQ + + + +IG + E+E+ +
Sbjct: 90 PIENVYLSYTKMP-DYKYIPGENPIFMNEKTS-RIQVETTVRVVVIG--IKWMEVEREFQ 145
Query: 129 EVGKQRAD 136
+ D
Sbjct: 146 ALASLEGD 153
>gi|449465372|ref|XP_004150402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
gi|449522228|ref|XP_004168129.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Cucumis sativus]
Length = 175
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 13 GFAVAITGAESIGKGLIRN-GTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEA 71
G+ +A+T E+IG+G +R G VL F V I F+ ++GEIL V V K G
Sbjct: 47 GYFLAVTTLENIGEGKVRQTGDVL--FPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRC 104
Query: 72 GAVQIFCL----IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
G V+ L +P D G+ P + +D KI+KD + +IGT+
Sbjct: 105 GPVENIYLSYLKMP-DYRYVPGENPVF-LNDKLSKIEKDVVVRFIVIGTK 152
>gi|297800772|ref|XP_002868270.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297314106|gb|EFH44529.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 178
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ VA+T + IG+G IR T V F V + F+ FKGEI+ V V K G G
Sbjct: 47 GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106
Query: 73 AVQIFCL----IPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
++ L +P D + G+ P + S +IQ + + + +IG +
Sbjct: 107 PIENVYLSYTKMP-DYKYVPGENPIFMNEKTS-RIQVETTVRVVVIGIK 153
>gi|358372760|dbj|GAA89362.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
kawachii IFO 4308]
Length = 193
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIF--CLIPDDM 84
GLI +GT LV V+ + IVFRPFKGEI+ ++ + G AV+ F L+P D+
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGIKV---AVEFFNDILVPPDL 113
Query: 85 EL 86
L
Sbjct: 114 LL 115
>gi|145253312|ref|XP_001398169.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus niger CBS
513.88]
gi|134083732|emb|CAK42970.1| unnamed protein product [Aspergillus niger]
gi|350633207|gb|EHA21573.1| hypothetical protein ASPNIDRAFT_51264 [Aspergillus niger ATCC 1015]
Length = 193
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIF--CLIPDDM 84
GLI +GT LV V+ + IVFRPFKGEI+ ++ + G AV+ F L+P D+
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHGIKV---AVEFFNDILVPPDL 113
Query: 85 EL 86
L
Sbjct: 114 LL 115
>gi|119484158|ref|XP_001261982.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
gi|119410138|gb|EAW20085.1| DNA-directed rna polymerase III 25 kD polypeptide [Neosartorya
fischeri NRRL 181]
Length = 201
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIF--CLIPDDM 84
GLI +GT LV V+ + IVFRPFKGEIL ++ + G V+ F LIP D+
Sbjct: 65 GLIGHGTGLVNVNVKFRLIVFRPFKGEILLGKISSATQHGIKI---GVEFFNDILIPPDL 121
Query: 85 EL 86
L
Sbjct: 122 LL 123
>gi|392585924|gb|EIW75262.1| hypothetical protein CONPUDRAFT_169647 [Coniophora puteana
RWD-64-598 SS2]
Length = 229
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G VA+ S G G +R G L+ + V + +VFRPF GE++ A V ++ G G
Sbjct: 43 GLCVAVFDLVSAGSGRVRYGDGLLYYKVAFRMVVFRPFVGEVVIARVRSADEEGVRLTMG 102
Query: 73 AVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLK 112
DDM + LP + D S + WL
Sbjct: 103 FF-------DDMYVPLAYLPQPSAFDPSER----AHFWLP 131
>gi|402074868|gb|EJT70339.1| DNA-directed RNA polymerase III polypeptide [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 209
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
G + + +GLI +GT +V V C+ +VFRPFKGE+L A ++ K G
Sbjct: 43 GLCICVYDLLWASEGLIGHGTGVVNVNVECRLVVFRPFKGEVLFARISRCVKDG 96
>gi|255559937|ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
gi|223539824|gb|EEF41404.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
[Ricinus communis]
Length = 194
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G +++ I G I G T+ VR + +VFRPF GEI+ A + N G G
Sbjct: 43 GLCISVYDVTHIDGGFIFPGDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDGLRLSLG 102
Query: 73 AVQIFCLIPDDMELQTGDL--PSYTTSDGSVKIQ 104
DD+ + + L PSY+ D + Q
Sbjct: 103 FF-------DDIYIPSHRLPKPSYSQQDPENRYQ 129
>gi|119594497|gb|EAW74091.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_b
[Homo sapiens]
Length = 97
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 64 KMGFLAEAGAVQIFCL---IPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119
++G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+VD
Sbjct: 19 QVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVD 78
Query: 120 VTEI 123
+I
Sbjct: 79 KNDI 82
>gi|389631563|ref|XP_003713434.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
gi|351645767|gb|EHA53627.1| DNA-directed RNA polymerase III polypeptide [Magnaporthe oryzae
70-15]
Length = 213
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G + + +GLI +G LV V C+ ++FRPFKGE+L ++ K G
Sbjct: 43 GLCICMYDLLWASEGLIGHGDGLVNVNVECRLVIFRPFKGEVLFGRISRCVKDG------ 96
Query: 73 AVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ---VDVTEIEKAR-- 127
+ + DD+ + +LP T D D LW+ + Q D+ E+ + R
Sbjct: 97 -IHLRTDFFDDIFVPFDELPEGATFD------HDQSLWVWHVEDQEMYYDIHEMVRFRVS 149
Query: 128 REVGKQRADKHPVEA 142
E + + P+E
Sbjct: 150 SEEWQDQTPTKPIEG 164
>gi|449297230|gb|EMC93248.1| hypothetical protein BAUCODRAFT_141757 [Baudoinia compniacensis
UAMH 10762]
Length = 214
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 6 GTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT----- 60
G C G H A +GLI +GT +V V + +VFRPFKGEI+ ++
Sbjct: 43 GLCVGFHSLIKA-------SEGLIGHGTGIVNVNVDFRVVVFRPFKGEIIRGVISASTEN 95
Query: 61 -MVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYT--TSDGSVKIQK 105
M GF + + + D E + G P + T+D S+ K
Sbjct: 96 GMQMSTGFFEDVVVPKEWLFSVSDFESEDGAPPVWIWRTNDMSLYFDK 143
>gi|452847392|gb|EME49324.1| hypothetical protein DOTSEDRAFT_163611 [Dothistroma septosporum
NZE10]
Length = 222
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 6 GTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKM 65
G C G H S +GLI +GT V V + IVFRPF+GEI+ A +T +
Sbjct: 43 GLCVGFHSLM-------SASEGLIGHGTGTVNVNVDFRLIVFRPFRGEIIRATITRADVS 95
Query: 66 GFLAEA 71
G A
Sbjct: 96 GLTLSA 101
>gi|18403570|ref|NP_566719.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
gi|21553765|gb|AAM62858.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
gi|332643168|gb|AEE76689.1| DNA-directed RNA polymerase II subunit G [Arabidopsis thaliana]
Length = 174
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ + T E+IG+G I+ T + F V I F+ FKGEI+ V V+K G ++G
Sbjct: 46 GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105
Query: 73 AVQIFCLIPDDM---ELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARRE 129
+I L M E G+ P + S +IQ IG +V ++ RE
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQ---------IGARVRFVVLDTEWRE 155
Query: 130 VGK 132
K
Sbjct: 156 AEK 158
>gi|302814541|ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
Length = 187
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G V++ +SI G + G T+ V Q ++FRPF GEIL A + +K G + G
Sbjct: 43 GLCVSLYDIQSIEGGFVFPGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNGLVLSMG 102
Query: 73 AVQ 75
+
Sbjct: 103 FFE 105
>gi|297831004|ref|XP_002883384.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329224|gb|EFH59643.1| RNA polymerase Rpb7 N-terminal domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 174
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ + T E+IG+G I+ T + F V I F+ FKGE++ V V+K G +G
Sbjct: 46 GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEVVHGVVQKVHKSGVFLRSG 105
Query: 73 AVQIFCLIPDDM---ELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARRE 129
+I L M E G+ P + + S +IQ IG +V ++ RE
Sbjct: 106 PYEIIYLSHVKMPGYEFIPGEKPIFMNQNMS-RIQ---------IGARVRFIVLDTEWRE 155
Query: 130 VGK 132
K
Sbjct: 156 AEK 158
>gi|11994719|dbj|BAB03035.1| RNA polymerase II fifth largest subunit-like protein [Arabidopsis
thaliana]
Length = 157
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G+ + T E+IG+G I+ T + F V I F+ FKGEI+ V V+K G ++G
Sbjct: 29 GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 88
Query: 73 AVQIFCLIPDDM---ELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARRE 129
+I L M E G+ P + S +IQ IG +V ++ RE
Sbjct: 89 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQ---------IGARVRFVVLDTEWRE 138
Query: 130 VGK 132
K
Sbjct: 139 AEK 141
>gi|121719683|ref|XP_001276540.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
gi|119404752|gb|EAW15114.1| DNA-directed rna polymerase III 25 kD polypeptide [Aspergillus
clavatus NRRL 1]
Length = 216
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIF--CLIPDDM 84
GLI +GT LV V+ + IVFRPFKGEI+ ++ + G V+ F L+P D+
Sbjct: 80 GLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATQQGIKI---GVEFFNDILVPPDL 136
Query: 85 EL 86
L
Sbjct: 137 LL 138
>gi|123975905|ref|XP_001330423.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121896651|gb|EAY01797.1| RNA polymerase Rpb7, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 182
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG G + IT IGKG + + T ++ V+ + +V RP++ ++ A + ++N+
Sbjct: 45 EGQFMLGKGLILKITKIIEIGKGRVSSRTGCASYSVKFKALVLRPYEDLVIDAKIMILNE 104
Query: 65 MGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKII 114
+A AG + + L+ D + + L +Y +G + + +KII
Sbjct: 105 FAIMANAGPLTVAVPKTLLEKDYDFEPETL-TYKQKNGGKTLGSKTVIRVKII 156
>gi|298674525|ref|YP_003726275.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287513|gb|ADI73479.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 188
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 4 VEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
+EG ++G VAIT ESIG+G I G V + V + IVF P E++ V +
Sbjct: 34 LEGRIDKKNGSIVAITDIESIGEGHIIMGDGAVYYDVTFKAIVFMPMMQEVIEGKVVEIV 93
Query: 64 KMGFLAEAGAV 74
G GA+
Sbjct: 94 DFGAFISFGAM 104
>gi|315046208|ref|XP_003172479.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
gi|311342865|gb|EFR02068.1| DNA-directed RNA polymerase III polypeptide [Arthroderma gypseum
CBS 118893]
Length = 195
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G VA GLI +GT LV V+ + IVFRPFKGE++ +T + G
Sbjct: 43 GLCVAFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEVIIGKITNGTEQGIKI--- 99
Query: 73 AVQIF--CLIPDDMEL 86
++ F ++P DM L
Sbjct: 100 GIEFFNDIIVPPDMLL 115
>gi|426368872|ref|XP_004051425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Gorilla gorilla gorilla]
gi|119594496|gb|EAW74090.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_a
[Homo sapiens]
gi|149062300|gb|EDM12723.1| polymerase (RNA) II (DNA directed) polypeptide G, isoform CRA_b
[Rattus norvegicus]
Length = 69
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 80 IPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEI 123
IP +ME + P Y T D + IQ+D E+ LKI+GT+VD +I
Sbjct: 10 IPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDI 54
>gi|67521980|ref|XP_659051.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|40745421|gb|EAA64577.1| hypothetical protein AN1447.2 [Aspergillus nidulans FGSC A4]
gi|259486758|tpe|CBF84875.1| TPA: DNA-directed RNA polymerase III subunit 22.9 kDa, putative
(AFU_orthologue; AFUA_8G04350) [Aspergillus nidulans
FGSC A4]
Length = 208
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 19/117 (16%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIF--CLIPDDM 84
GLI +GT LV V+ + IVFRPF+GEI+ ++ + G V+ F L+P D+
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFRGEIVLGKISSATENGIKI---GVEFFNDILVPPDL 113
Query: 85 ELQTGDLPSYTTSDGS-VKIQKDCELWLKIIGT-QVDVTEIEKARREVGKQRADKHP 139
L DG+ Q +W GT DV E+ + R E+ ++ D+ P
Sbjct: 114 LL-----------DGARFDYQDQVWIWENEEGTFYFDVGEVVRFRVEM-EEWHDQIP 158
>gi|320040236|gb|EFW22169.1| DNA-directed RNA polymerase III polypeptide [Coccidioides
posadasii str. Silveira]
Length = 195
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 6 GTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
G C G + F + GLI +GT LV V+ + IVFRPFKGE++ +T
Sbjct: 43 GLCMGFYDFLES-------SDGLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|358365372|dbj|GAA81994.1| nonribosomal peptide synthase [Aspergillus kawachii IFO 4308]
Length = 2623
Score = 38.5 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 64 KMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEI 123
+ F+ +F L D +TGDL Y DG+++ +L +K+ G ++++ EI
Sbjct: 383 EQAFIERPPWASLFGLSSDARFYKTGDLVKYNVEDGTLRFVGRKDLQVKVNGQRIELQEI 442
Query: 124 EKARREVGKQRADKHPV 140
E RE+ RAD +
Sbjct: 443 EHCAREL---RADTSAI 456
>gi|302667367|ref|XP_003025270.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
gi|291189368|gb|EFE44659.1| hypothetical protein TRV_00586 [Trichophyton verrucosum HKI 0517]
Length = 253
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
G +A GLI +GT LV V+ + IVFRPFKGE++ +T + G
Sbjct: 55 GLCIAFYDLLESSDGLIGHGTGLVNVNVKFRIIVFRPFKGEVIIGKITNGTEQG 108
>gi|115491011|ref|XP_001210133.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
gi|114196993|gb|EAU38693.1| hypothetical protein ATEG_00047 [Aspergillus terreus NIH2624]
Length = 206
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
GLI +GT LV V+ + IVFRPFKGEI+ ++ + G
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHG 96
>gi|169784414|ref|XP_001826668.1| DNA-directed RNA polymerase III subunit RPC8 [Aspergillus oryzae
RIB40]
gi|238508450|ref|XP_002385418.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|83775415|dbj|BAE65535.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688937|gb|EED45289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Aspergillus flavus NRRL3357]
gi|391864250|gb|EIT73546.1| DNA-directed RNA polymerase subunit E' [Aspergillus oryzae 3.042]
Length = 193
Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
GLI +GT LV V+ + IVFRPFKGEI+ ++ + G
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIMLGKISSATEHG 96
>gi|162605728|ref|XP_001713379.1| RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
gi|13794311|gb|AAK39688.1|AF083031_45 RNA polymerase II RPB7 subunit-like protein [Guillardia theta]
Length = 196
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 5 EGTCSGRHGFAVAITGAESIG-KGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVN 63
EG G G + I ++ G I G V F V Q +V + FKGEI+ A V +
Sbjct: 61 EGLPFGNVGSIIMIINIDNQKLYGKILPGFSSVLFKVNFQAVVLKIFKGEIIDAIVKNIT 120
Query: 64 KMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDV 120
G A AG + IF I D+ Q + + ++ I+K+ + KI+ + +
Sbjct: 121 SFGIFASAGILNIFISNKFISQDLISQQSQ-TLFNFKNSTINIKKNDIIRCKILNLKYNT 179
Query: 121 TEIE 124
I+
Sbjct: 180 GSIQ 183
>gi|242799025|ref|XP_002483289.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
gi|218716634|gb|EED16055.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces stipitatus ATCC 10500]
Length = 195
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
GLI +GT LV V + IVFRPFKGEIL +T ++ G
Sbjct: 57 GLIGHGTGLVNVNVTFRLIVFRPFKGEILLGKITGSSEEG 96
>gi|261197898|ref|XP_002625351.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595314|gb|EEQ77895.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607836|gb|EEQ84823.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327355776|gb|EGE84633.1| DNA-directed RNA polymerase III subunit polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 195
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
GLI +GT LV V+ + IVFRPFKGEI+ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIILGKIT 90
>gi|388579438|gb|EIM19762.1| hypothetical protein WALSEDRAFT_55467 [Wallemia sebi CBS 633.66]
Length = 223
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G A+ + +G I++ V + + I+FRPF GEIL A V ++ G A G
Sbjct: 43 GLALCLHSLLDSSEGFIQHSNGNVYYKCKFNLIIFRPFVGEILIAKVKSTSEEGITASVG 102
Query: 73 AVQIFCLIPDDMELQTGDLPSYTTSD 98
DD+ + +LP T D
Sbjct: 103 FF-------DDIFIPIYNLPPITQYD 121
>gi|295665246|ref|XP_002793174.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|225679219|gb|EEH17503.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
gi|226278088|gb|EEH33654.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226290932|gb|EEH46360.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide
[Paracoccidioides brasiliensis Pb18]
Length = 195
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
GLI +GT LV V+ + IVFRPFKGEI+ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEIILGKIT 90
>gi|154283489|ref|XP_001542540.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410720|gb|EDN06108.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 693
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
GLI +GT LV V+ + IVFRPFKGE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|326477107|gb|EGE01117.1| DNA-directed RNA polymerase III polypeptide [Trichophyton equinum
CBS 127.97]
Length = 195
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
G +A GLI +GT LV V+ + IVFRPFKGE++ +T
Sbjct: 43 GLCIAFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEVIIGKIT 90
>gi|326472028|gb|EGD96037.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS
112818]
Length = 195
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
G +A GLI +GT LV V+ + IVFRPFKGE++ +T
Sbjct: 43 GLCIAFYDLLESSDGLIGHGTGLVNVNVKFRMIVFRPFKGEVIIGKIT 90
>gi|392862351|gb|EAS37009.2| DNA-directed RNA polymerase, partial [Coccidioides immitis RS]
Length = 195
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
GLI +GT LV V+ + IVFRPFKGE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|255953671|ref|XP_002567588.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589299|emb|CAP95439.1| Pc21g05420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 185
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
GLI +GT LV V+ + IVFRPFKGEI+
Sbjct: 49 GLIGHGTGLVNVNVKFRMIVFRPFKGEIM 77
>gi|451849514|gb|EMD62817.1| hypothetical protein COCSADRAFT_144644 [Cochliobolus sativus
ND90Pr]
Length = 214
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 23 SIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFL 68
S +GLI +GT LV V + VFRPF+GEI+ + N+ G +
Sbjct: 53 SASEGLIGHGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQEGII 98
>gi|425771830|gb|EKV10263.1| hypothetical protein PDIP_61090 [Penicillium digitatum Pd1]
gi|425777177|gb|EKV15361.1| hypothetical protein PDIG_26640 [Penicillium digitatum PHI26]
Length = 193
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
GLI +GT LV V+ + IVFRPFKGEI+
Sbjct: 57 GLIGHGTGLVNVNVKFRMIVFRPFKGEIM 85
>gi|358398243|gb|EHK47601.1| hypothetical protein TRIATDRAFT_83183 [Trichoderma atroviride IMI
206040]
Length = 193
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
G +++ +GLI +GT LV V + IVFRPFKGE++
Sbjct: 43 GLCISLYDVLWTSEGLIGHGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|358379479|gb|EHK17159.1| hypothetical protein TRIVIDRAFT_66115 [Trichoderma virens Gv29-8]
Length = 193
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
G +++ +GLI +GT LV V + IVFRPFKGE++
Sbjct: 43 GLCISLYDVLWTSEGLIGHGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|451992730|gb|EMD85209.1| hypothetical protein COCHEDRAFT_1229156 [Cochliobolus
heterostrophus C5]
Length = 213
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 23 SIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFL 68
S +GLI +GT LV V + VFRPF+GEI+ + N+ G +
Sbjct: 53 SASEGLIGHGTGLVNVNVEFRMTVFRPFRGEIIYGRIKSSNQEGII 98
>gi|213406069|ref|XP_002173806.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
gi|212001853|gb|EEB07513.1| RNA polymerase III subunit Rpc25 [Schizosaccharomyces japonicus
yFS275]
Length = 205
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
G A+AI +IG+G+I+ G V+ + +VFRPF+GE++ + ++G
Sbjct: 43 GLAIAIFDFLTIGEGIIKFGDGCSYMNVKFRLLVFRPFRGEVMLGRIKSCTELG 96
>gi|225561861|gb|EEH10141.1| DNA-directed RNA polymerase III 25 kD polypeptide [Ajellomyces
capsulatus G186AR]
Length = 195
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
GLI +GT LV V+ + IVFRPFKGE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|325091306|gb|EGC44616.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 195
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
GLI +GT LV V+ + IVFRPFKGE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|302810586|ref|XP_002986984.1| hypothetical protein SELMODRAFT_235152 [Selaginella
moellendorffii]
gi|300145389|gb|EFJ12066.1| hypothetical protein SELMODRAFT_235152 [Selaginella
moellendorffii]
Length = 155
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFL 68
G V++ +SI G + G T+ V Q ++FRPF GEIL A + +K G +
Sbjct: 43 GLCVSLYDIQSIEGGFVFPGDGAPTYTVEFQLVMFRPFPGEILVAKLKKCDKNGLV 98
>gi|302659535|ref|XP_003021456.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Trichophyton verrucosum HKI 0517]
gi|291185357|gb|EFE40838.1| DNA-directed RNA polymerase III complex subunit Rpc25
[Trichophyton verrucosum HKI 0517]
Length = 104
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGE 53
+ DVEG C+G + + V + I +G I G+ L + + + IV++PFKGE
Sbjct: 31 LDDVEGICTGDY-YIVCVMDMYDISEGKIIPGSGLAEYTIVYRAIVWKPFKGE 82
>gi|212541336|ref|XP_002150823.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
gi|210068122|gb|EEA22214.1| DNA-directed RNA polymerase III subunit 22.9 kDa, putative
[Talaromyces marneffei ATCC 18224]
Length = 194
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
GLI +GT LV V + IVFRPFKGEIL
Sbjct: 57 GLIGHGTGLVNVNVTFRLIVFRPFKGEIL 85
>gi|346321249|gb|EGX90849.1| DNA-directed RNA polymerase III, putative [Cordyceps militaris
CM01]
Length = 192
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 25 GKGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
+GLI NGT LV + IVFRPFKGE+L
Sbjct: 55 SEGLIGNGTGLVNVNAEFRMIVFRPFKGEVL 85
>gi|397638385|gb|EJK73047.1| hypothetical protein THAOC_05356 [Thalassiosira oceanica]
Length = 314
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 24 IGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIFCLIP 81
IG G++ V QC+VFRPF GE+L VT N+ G G + IP
Sbjct: 55 IGHGMLVPADGGAHHQVIFQCLVFRPFVGEVLIGTVTESNEAGIKVSVGGFFDYVFIP 112
>gi|340515872|gb|EGR46123.1| predicted protein [Trichoderma reesei QM6a]
Length = 193
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
G +++ +GLI +GT LV V + IVFRPFKGE++
Sbjct: 43 GLCISLFDVLWTSEGLIGHGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|440632844|gb|ELR02763.1| hypothetical protein GMDG_05707 [Geomyces destructans 20631-21]
Length = 207
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
G + + S +GLI +GT LV V + +VFRPF+ E+L +T + G
Sbjct: 43 GLCICLYDLLSSSEGLIGHGTGLVNVNVEFRLVVFRPFRHEVLHGRITSASPEG 96
>gi|240275469|gb|EER38983.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
Length = 202
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 27 GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
GLI +GT LV V+ + IVFRPFKGE++ +T
Sbjct: 57 GLIGHGTGLVNVNVKFRLIVFRPFKGEVILGKIT 90
>gi|393221996|gb|EJD07480.1| hypothetical protein FOMMEDRAFT_143872 [Fomitiporia mediterranea
MF3/22]
Length = 243
Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G + + G+G +R G + V + +VFRPF GE++ A V ++ G G
Sbjct: 43 GLCICVFDIAQAGEGKVRYGDGCLWHRVVFRMVVFRPFSGEVILAKVKSSDEEGIRLSIG 102
Query: 73 AVQIFCLIPDDMELQTGDLPSYTTSDGS 100
DDM + LP+ + D S
Sbjct: 103 FF-------DDMHIPPSYLPAPSAFDPS 123
>gi|429854331|gb|ELA29351.1| DNA-directed RNA polymerase iii polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 197
Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 26 KGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
+GLI +GT LV V + IVFRPFKGE++
Sbjct: 56 EGLIGHGTGLVNVNVEFRMIVFRPFKGEVM 85
>gi|310793419|gb|EFQ28880.1| RNA polymerase III subunit Rpc25 [Glomerella graminicola M1.001]
Length = 197
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 26 KGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
+GLI +GT LV V + IVFRPFKGE++
Sbjct: 56 EGLIGHGTGLVNVNVEFRLIVFRPFKGEVM 85
>gi|190348881|gb|EDK41428.2| hypothetical protein PGUG_05526 [Meyerozyma guilliermondii ATCC
6260]
Length = 194
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
G VA+ I G ++ G VR +C+V++PF GEIL VT G
Sbjct: 43 GLVVAVWDLSEIHDGQLKPGDGASFVKVRFRCVVWKPFVGEILSGWVTQCTAEG 96
>gi|330508866|ref|YP_004385294.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
gi|328929674|gb|AEB69476.1| DNA-directed RNA polymerase [Methanosaeta concilii GP6]
Length = 194
Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 5 EGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNK 64
EG G VA+ GA+ IG+G I G + + V +VF+P EI+ V + K
Sbjct: 35 EGVVDKSLGTIVAVLGADDIGEGHILAGDGSIYYEVNFDTLVFKPEMQEIIEGEVVEIVK 94
Query: 65 MG-FLA 69
G FL+
Sbjct: 95 FGAFLS 100
>gi|380491621|emb|CCF35188.1| RNA polymerase III subunit Rpc25 [Colletotrichum higginsianum]
Length = 197
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 26 KGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
+GLI +GT LV V + +VFRPFKGE++
Sbjct: 56 EGLIGHGTGLVNVNVEFRLVVFRPFKGEVM 85
>gi|406865974|gb|EKD19014.1| RNA polymerase III subunit Rpc25 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 250
Score = 35.4 bits (80), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
G V + + +GLI +GT LV V + IVFRPFK E++ ++ G
Sbjct: 72 GLCVCLYDLLAASEGLIGHGTGLVNVNVEFRLIVFRPFKNEVITGRISSATPRG 125
>gi|308048365|ref|YP_003911931.1| mechanosensitive ion channel MscS [Ferrimonas balearica DSM 9799]
gi|307630555|gb|ADN74857.1| MscS Mechanosensitive ion channel [Ferrimonas balearica DSM 9799]
Length = 292
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 16 VAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFK-GEILGAGVTMVNKMGFLAEAGAV 74
VA+ GA + GL G+ L F ++F+PFK G+++ A GFL +
Sbjct: 99 VAMLGAAGLAIGLALQGS-LANFAGGVLILLFKPFKFGDVIEA-------QGFLGRVHEI 150
Query: 75 QIFCLIPDDMELQTGDLPSYTTSDGSVK 102
QIF I M+ Q +P+ S+G +K
Sbjct: 151 QIFNTILLTMDNQKVVIPNALLSNGCIK 178
>gi|405120013|gb|AFR94784.1| RNA polymerase II subunit 7 [Cryptococcus neoformans var. grubii
H99]
Length = 83
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 14 FAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFL 68
+ +++ IG+G I T F R IV +PFKGE++ A V VNK
Sbjct: 5 YIISVITITDIGEGKIIPSTGQAKFKTRYTAIVMKPFKGEVVDAKVVNVNKASLF 59
>gi|344241771|gb|EGV97874.1| DNA-directed RNA polymerase II subunit RPB7 [Cricetulus griseus]
Length = 69
Score = 35.4 bits (80), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 80 IPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEI 123
IP +ME + P Y T + IQ+D E+ LKI+GT+VD +I
Sbjct: 10 IPSEMEFDPNSNPPCYKTMGEDIVIQQDDEIRLKIVGTRVDKNDI 54
>gi|402223542|gb|EJU03606.1| polymerase III polypeptide H [Dacryopinax sp. DJM-731 SS1]
Length = 238
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G + + +G +R G + V + +VFRPF GE+L V ++ AE G
Sbjct: 43 GLCIVLFDILECSEGRVRFGDGCLWHKVTFRMVVFRPFVGEVL------VGEVKGCAEEG 96
Query: 73 AVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARR 128
VQ+ DD+ + T LP +TT D ++ W + D +I K R
Sbjct: 97 -VQVSLGFFDDIHVPTRLLPPHTTWDPEDQVF----FWAPQLSDGQDPLDIPKEER 147
>gi|330925060|ref|XP_003300899.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
gi|311324782|gb|EFQ91031.1| hypothetical protein PTT_12262 [Pyrenophora teres f. teres 0-1]
Length = 214
Score = 35.0 bits (79), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 23 SIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFL 68
S +GLI +GT LV + + VFRPF+GEI+ + N+ G +
Sbjct: 53 SATEGLIGHGTGLVNVNIEFRMTVFRPFRGEIIYGLIKSSNEEGII 98
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,209,811,865
Number of Sequences: 23463169
Number of extensions: 84073446
Number of successful extensions: 175975
Number of sequences better than 100.0: 407
Number of HSP's better than 100.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 175272
Number of HSP's gapped (non-prelim): 408
length of query: 143
length of database: 8,064,228,071
effective HSP length: 107
effective length of query: 36
effective length of database: 9,848,636,284
effective search space: 354550906224
effective search space used: 354550906224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)