BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032315
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2
SV=1
Length = 176
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 108/126 (85%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VA+TG E+IGKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
MVNKMGF AEAG VQIF LIPDDME Q+GD+P+YTTSDGSVKIQKD E+ LKIIGT+
Sbjct: 91 MVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD TEI
Sbjct: 151 VDATEI 156
>sp|P38421|RPB7_ARATH DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana
GN=RPB19 PE=1 SV=1
Length = 176
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/126 (76%), Positives = 107/126 (84%), Gaps = 3/126 (2%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVT 60
MKDVEGTCSGRHGF VAITG ++IGKGLIR+GT VTF V+ QC+VFRPFKGEIL A VT
Sbjct: 31 MKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVT 90
Query: 61 MVNKMGFLAEAGAVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
+VNKMGF AEAG VQIF LIPDDME Q GD+P+YTTSDGSVKIQK+CE+ LKIIGT+
Sbjct: 91 LVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR 150
Query: 118 VDVTEI 123
VD T I
Sbjct: 151 VDATAI 156
>sp|Q54P04|RPB7_DICDI DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium
discoideum GN=polr2g PE=3 SV=1
Length = 172
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+GR+GF + IT + + KG + + V F V+ + I+F+PFKGE+L A VT V
Sbjct: 33 EVEGTCTGRYGFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQT-GDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
+GF AEAG + IF LIP DM +P + + DGS KI KD E+ L+I GT+V
Sbjct: 93 TNLGFFAEAGPLSIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTRV 152
Query: 119 DVTEI 123
D TEI
Sbjct: 153 DATEI 157
>sp|Q7ZW41|RPB7_DANRE DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio
GN=polr2g PE=2 SV=1
Length = 172
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D V IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>sp|P62489|RPB7_RAT DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>sp|P62488|RPB7_MOUSE DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus
GN=Polr2g PE=2 SV=1
Length = 172
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>sp|P62487|RPB7_HUMAN DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens
GN=POLR2G PE=1 SV=1
Length = 172
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>sp|Q5E9B8|RPB7_BOVIN DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G
PE=2 SV=1
Length = 172
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 3 DVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
+VEGTC+G++GF +A+T ++IG G+I+ G V + V+ + IVFRPFKGE++ A VT V
Sbjct: 33 EVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQV 92
Query: 63 NKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118
NK+G E G + F IP +ME + P Y T D + IQ+D E+ LKI+GT+V
Sbjct: 93 NKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRV 152
Query: 119 DVTEI 123
D +I
Sbjct: 153 DKNDI 157
>sp|O14459|RPB7_SCHPO DNA-directed RNA polymerase II subunit rpb7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb7 PE=1 SV=1
Length = 172
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 8/129 (6%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIG--KGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAG 58
+ DVEGTCSG++G+ + + + +I KG + G F V+ + +++RPF+GE++ A
Sbjct: 32 LADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAI 91
Query: 59 VTMVNKMGFLAEAGAVQIFC---LIPDDMELQ-TGDLPSYTTSDGSVKIQKDCELWLKII 114
VT VNKMGF A G + +F L+P DM+ T + P+Y+ D I+K + LKI+
Sbjct: 92 VTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQV--IEKGSNVRLKIV 149
Query: 115 GTQVDVTEI 123
GT+ D TEI
Sbjct: 150 GTRTDATEI 158
>sp|P34087|RPB7_YEAST DNA-directed RNA polymerase II subunit RPB7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB7 PE=1
SV=1
Length = 171
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 1 MKDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVT-----FLVRCQCIVFRPFKGEIL 55
+++VEG+C+G+ G+ + + ++I I+ G +L T F V+ + +VF+PFKGE++
Sbjct: 31 LEEVEGSCTGKFGYILCVLDYDNID---IQRGRILPTDGSAEFNVKYRAVVFKPFKGEVV 87
Query: 56 GAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWL 111
V ++ GF + G +++F L+P D+ G + PSY +S+ + I+ + +
Sbjct: 88 DGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKS--RIRV 145
Query: 112 KIIGTQVDVTEIE 124
KI G V+ I
Sbjct: 146 KIEGCISQVSSIH 158
>sp|Q5BDG7|CFT1_EMENI Protein cft1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=cft1 PE=3 SV=1
Length = 1339
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 10 GRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCI--VFRPFKGE---ILGAGVTMVNK 64
G GF +A G +S+ +GL +G++L + QC V + KG I G V +
Sbjct: 1067 GGQGFLIAAQGQKSMVRGLKEDGSLLPVAFMDMQCFVSVIKELKGTGMCIFGDAVKGLWF 1126
Query: 65 MGFLAEAGAVQIFCLIPDDMELQTGD-LPSYTTSDGS----VKIQKDCELWL 111
G+ E + +F D +E+ D LP DG+ V DC L++
Sbjct: 1127 AGYSEEPYKMSLFAKDLDYLEVLAADFLP-----DGNKLFIVVADSDCNLYV 1173
>sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc25 PE=1 SV=1
Length = 203
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAG 72
G A+ + IG+G+I+ G V + I+FRPF+GE+ M+ K+ +E G
Sbjct: 43 GLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEV------MLGKIKSCSEEG 96
Query: 73 ---AVQIF--CLIPDDM 84
+ F IP DM
Sbjct: 97 IRVTISFFDDIFIPKDM 113
>sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8 OS=Dictyostelium
discoideum GN=polr3h-1 PE=2 SV=1
Length = 252
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 13 GFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEIL 55
G VA+ G + +G +VR + +VF+PFKGE+L
Sbjct: 42 GLFVALYDILGTGDSYVHSGDGGAHLMVRFRMVVFKPFKGEVL 84
>sp|P60092|PRMA_PHOLL Ribosomal protein L11 methyltransferase OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=prmA PE=3
SV=1
Length = 296
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 21 AESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMV 62
AES+G L+ NG V VTF VF P GE G T V
Sbjct: 15 AESLGDALMENGAVSVTFQDSHDNPVFEPLPGETRLWGDTDV 56
>sp|Q9P3V0|WTF4_SCHPO Uncharacterized protein wtf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=wtf4 PE=3 SV=1
Length = 363
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 82 DDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDV----TEIEKARREVGKQRADK 137
++++L+ G LP Y + DGS + E+W I D TEI E ++ D
Sbjct: 21 NEIDLEKGPLPEYNSEDGS-TLPPYSEIWKYIKTVSEDSSTGPTEIANPNVERRQEFKDS 79
Query: 138 HP 139
HP
Sbjct: 80 HP 81
>sp|O74420|WTF13_SCHPO Uncharacterized protein wtf13 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=wtf13 PE=3 SV=2
Length = 418
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 82 DDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDV----TEIEKARREVGKQRADK 137
++++L+ G LP Y + DGS + E+W I D TEI E ++ D
Sbjct: 21 NEIDLEKGPLPEYNSEDGS-TLPPYSEIWKYIKTVSEDSSTGPTEIANPNVERRQEFKDS 79
Query: 138 HP 139
HP
Sbjct: 80 HP 81
>sp|B2VL75|PRMA_ERWT9 Ribosomal protein L11 methyltransferase OS=Erwinia tasmaniensis
(strain DSM 17950 / Et1/99) GN=prmA PE=3 SV=1
Length = 293
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 21 AESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGE 53
AE +G LI NG V VTF VF P GE
Sbjct: 15 AEELGDALIENGAVSVTFQDTHDNPVFEPLPGE 47
>sp|C4LBV1|RPOC_TOLAT DNA-directed RNA polymerase subunit beta' OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=rpoC PE=3 SV=1
Length = 1434
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 7 TCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMG 66
+C G G + ++GA+ K + R G L + R +C + K E AG +V K+
Sbjct: 516 SCVGAKGEGMVLSGAKEAEK-IYRAG--LASLHARVKCRITEYVKNE---AG-ELVPKIE 568
Query: 67 FLAEAGAVQIFCLI-PDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117
I LI P ME D P T G ++ + E W+K + Q
Sbjct: 569 LKNTTVGRAILSLILPKGMEYALIDPPLPMTEAGKAELAEHPERWIKYVSNQ 620
>sp|A1JRL5|PRMA_YERE8 Ribosomal protein L11 methyltransferase OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=prmA PE=3 SV=1
Length = 293
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 21 AESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGE 53
AES+G LI +G V VTF VF P GE
Sbjct: 15 AESLGDALIESGAVSVTFQDTHDNPVFEPLPGE 47
>sp|P39847|PPSC_BACSU Plipastatin synthase subunit C OS=Bacillus subtilis (strain 168)
GN=ppsC PE=1 SV=2
Length = 2555
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 81 PDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARREV 130
P D +TGDL + SDG+++ + +K+ G +V++ EIE A R++
Sbjct: 1871 PGDRLYRTGDLARWL-SDGTIEYVGRIDDQVKVRGYRVELGEIETALRQI 1919
>sp|Q1GT37|ILVC_SPHAL Ketol-acid reductoisomerase OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=ilvC PE=3 SV=1
Length = 346
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 12/77 (15%)
Query: 2 KDVEGTCSGRHGF--AVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGE--ILGA 57
++ +G+ + +G+ A+A++ A ++G G R+G + TF C+ +F GE +L
Sbjct: 155 QEAQGSAAAGNGYAKALALSYASAVGGG--RSGIIETTFKEECETDLF----GEQAVLCG 208
Query: 58 GVTMVNKMGF--LAEAG 72
G+T + + GF L EAG
Sbjct: 209 GITHLIQAGFETLVEAG 225
>sp|P48633|HMWP2_YERE8 High-molecular-weight protein 2 OS=Yersinia enterocolitica serotype
O:8 / biotype 1B (strain 8081) GN=irp2 PE=3 SV=1
Length = 2035
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 75 QIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKA 126
Q F +PD+ +TGDL Y DG+++ + +K+ G ++++ EIE A
Sbjct: 928 QQFLTLPDERWYRTGDLGCY-WPDGTIEFLGRRDKQVKVGGYRIELGEIESA 978
>sp|Q0UUE2|CFT1_PHANO Protein CFT1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=CFT1 PE=3 SV=1
Length = 1375
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 3 DVEGTCS-----GRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIV 46
+V+GT S G GF + G +S+ +GL +GT+L + QC V
Sbjct: 1109 EVKGTVSAISDLGTQGFLIMAQGQKSMVRGLKEDGTLLPVAFMDMQCYV 1157
>sp|Q9RS38|KGUA_DEIRA Guanylate kinase OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=gmk PE=3 SV=2
Length = 239
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 6 GTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFR-PFKGEILGAGVTMVNK 64
GT G + +TGA +GKG +R + + R P GE+ G V+
Sbjct: 12 GTPPQGRGLLIVVTGASGVGKGTLRERWLAGQDVFYSTSWTTREPRPGEVNGRDYVFVSP 71
Query: 65 MGFLAEA 71
FLA+A
Sbjct: 72 AEFLAKA 78
>sp|A6UWC6|TRUB_META3 Probable tRNA pseudouridine synthase B OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=truB PE=3 SV=1
Length = 331
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 12 HGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEA 71
HG V + G + KG+ + TVL+ L KGE +G G ++N L E+
Sbjct: 248 HGANVYLNGVSKLSKGIGADETVLIETL-----------KGEAIGIGTALLNTKNVLKES 296
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,172,284
Number of Sequences: 539616
Number of extensions: 2040559
Number of successful extensions: 4828
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4800
Number of HSP's gapped (non-prelim): 28
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)