Query 032315
Match_columns 143
No_of_seqs 105 out of 425
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 20:22:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ayh_B DNA-directed RNA polyme 100.0 1.9E-34 6.4E-39 225.4 14.9 132 2-133 32-195 (203)
2 3h0g_G DNA-directed RNA polyme 100.0 1.3E-34 4.5E-39 220.9 11.1 130 2-133 33-168 (172)
3 2ckz_B C25, DNA-directed RNA p 100.0 7.3E-33 2.5E-37 218.9 14.6 120 2-121 32-158 (218)
4 4ayb_E DNA-directed RNA polyme 100.0 1.1E-30 3.8E-35 199.6 12.8 119 2-121 32-154 (180)
5 2c35_B Human RPB7, DNA-directe 100.0 4.2E-30 1.4E-34 195.3 15.4 131 2-132 32-166 (172)
6 1y14_B B16, RPB7, DNA-directed 100.0 3E-29 1E-33 190.7 14.0 130 2-133 32-167 (171)
7 2b8k_G B16, DNA-directed RNA p 100.0 8.8E-29 3E-33 195.3 14.5 130 2-133 32-167 (215)
8 1go3_E DNA-directed RNA polyme 99.9 2.2E-26 7.5E-31 176.5 15.3 119 2-121 32-154 (187)
9 2rf4_A DNA-directed RNA polyme 99.9 9.8E-25 3.4E-29 171.8 12.5 121 7-130 72-213 (214)
10 2k52_A Uncharacterized protein 98.3 1.4E-06 5E-11 57.6 6.0 64 48-123 2-66 (80)
11 2khi_A 30S ribosomal protein S 98.2 1E-06 3.4E-11 62.3 4.3 76 41-123 20-96 (115)
12 2cqo_A Nucleolar protein of 40 98.2 8.2E-07 2.8E-11 63.4 3.1 69 41-120 12-85 (119)
13 2eqs_A ATP-dependent RNA helic 98.1 4.5E-06 1.5E-10 57.9 5.9 63 46-118 7-76 (103)
14 2khj_A 30S ribosomal protein S 98.0 7.5E-06 2.6E-10 57.1 4.9 64 47-121 27-94 (109)
15 1kl9_A Eukaryotic translation 98.0 1.7E-05 5.7E-10 60.6 7.1 66 49-122 13-81 (182)
16 2a19_A EIF-2- alpha, eukaryoti 97.9 2.8E-05 9.5E-10 59.0 7.1 66 49-122 13-81 (175)
17 2k4k_A GSP13, general stress p 97.9 1.9E-05 6.4E-10 57.0 5.8 63 48-121 4-70 (130)
18 1wi5_A RRP5 protein homolog; S 97.7 1.2E-05 4E-10 56.9 2.3 66 48-122 18-87 (119)
19 1luz_A Protein K3, protein K2; 97.7 1.4E-05 4.7E-10 54.2 2.4 67 48-123 8-77 (88)
20 2ja9_A Exosome complex exonucl 97.7 8.1E-05 2.8E-09 56.5 6.5 64 47-119 3-68 (175)
21 2id0_A Exoribonuclease 2; RNAs 97.7 0.00012 4E-09 65.3 8.1 75 47-123 554-638 (644)
22 2ba0_A Archeal exosome RNA bin 97.5 0.00021 7E-09 56.2 6.6 65 47-118 53-118 (229)
23 2z0s_A Probable exosome comple 97.5 0.00012 4.3E-09 57.5 5.0 64 47-117 62-129 (235)
24 3aev_A Translation initiation 97.5 0.00024 8.2E-09 57.4 6.7 67 48-122 8-77 (275)
25 1q8k_A Eukaryotic translation 97.4 0.00022 7.6E-09 58.5 6.3 66 49-122 11-79 (308)
26 2je6_I RRP4, exosome complex R 97.4 0.0002 6.9E-09 57.0 5.6 65 46-118 69-137 (251)
27 2bh8_A 1B11; transcription, mo 97.3 0.0002 6.9E-09 49.5 4.2 55 24-78 28-89 (101)
28 3cdi_A Polynucleotide phosphor 97.3 4.1E-05 1.4E-09 69.2 0.0 88 20-118 594-687 (723)
29 4aid_A Polyribonucleotide nucl 97.2 1.1E-05 3.7E-10 73.0 -4.1 88 20-118 604-697 (726)
30 3bzc_A TEX; helix-turn-helix, 97.0 0.00013 4.3E-09 66.6 0.9 61 49-120 652-716 (785)
31 3m7n_A Putative uncharacterize 97.0 0.00094 3.2E-08 50.4 5.5 61 46-115 53-124 (179)
32 3psi_A Transcription elongatio 97.0 0.0018 6.2E-08 61.5 8.3 62 49-121 900-966 (1219)
33 2wp8_J Exosome complex exonucl 97.0 0.0012 4.1E-08 61.4 6.6 71 47-119 883-965 (977)
34 2nn6_I 3'-5' exoribonuclease C 96.9 0.00053 1.8E-08 53.2 3.5 64 47-117 77-150 (209)
35 2nn6_H Exosome complex exonucl 96.9 0.00028 9.7E-09 57.9 2.0 69 47-117 91-164 (308)
36 3cw2_C Translation initiation 96.8 0.00032 1.1E-08 56.3 1.6 63 48-118 8-73 (266)
37 2vnu_D Exosome complex exonucl 96.7 0.0027 9.1E-08 57.5 6.7 70 48-119 667-748 (760)
38 3psf_A Transcription elongatio 96.3 0.00064 2.2E-08 63.6 0.0 64 49-122 903-970 (1030)
39 1e3p_A Guanosine pentaphosphat 96.3 5.6E-05 1.9E-09 68.7 -6.9 71 41-118 655-731 (757)
40 3go5_A Multidomain protein wit 96.2 0.013 4.5E-07 47.3 7.3 56 51-122 152-209 (285)
41 1hh2_P NUSA, N utilization sub 94.8 0.089 3E-06 43.7 7.5 59 48-120 131-189 (344)
42 1k0r_A NUSA; two component arr 94.3 0.095 3.2E-06 43.9 6.7 57 47-121 126-194 (366)
43 2asb_A Transcription elongatio 94.1 0.1 3.5E-06 41.6 6.2 56 47-120 3-70 (251)
44 3go5_A Multidomain protein wit 93.2 0.17 5.9E-06 40.7 6.1 66 49-117 4-81 (285)
45 2nn6_G Exosome complex exonucl 92.9 0.11 3.6E-06 42.2 4.4 62 47-117 123-185 (289)
46 2bx2_L Ribonuclease E, RNAse E 86.4 1.3 4.5E-05 38.5 6.2 73 47-121 41-119 (517)
47 3ie4_A GRAM-negative binding p 76.8 8.4 0.00029 26.5 6.4 60 57-116 6-81 (107)
48 3aqy_A Beta-1,3-glucan-binding 59.5 21 0.00073 24.3 5.4 59 58-116 9-82 (106)
49 2kha_A Beta-1,3-glucan-binding 56.9 21 0.00072 25.3 5.2 60 57-116 17-91 (130)
50 2r7d_A Ribonuclease II family 33.4 27 0.00091 29.6 3.0 58 47-124 399-457 (469)
51 1cyx_A CYOA; electron transpor 32.8 31 0.0011 26.3 3.0 40 91-132 25-72 (205)
52 2cua_A Protein (CUA); CUA cent 30.9 45 0.0015 23.3 3.4 23 91-115 54-76 (135)
53 3d0f_A Penicillin-binding 1 tr 29.5 76 0.0026 20.8 4.3 59 49-112 31-93 (106)
54 3qk9_A Mitochondrial import in 29.2 44 0.0015 25.6 3.4 43 15-58 134-180 (222)
55 2qcp_X Cation efflux system pr 25.2 1.3E+02 0.0046 18.9 4.9 54 55-115 10-66 (80)
56 2p9r_A Alpha-2-M, alpha-2-macr 25.2 56 0.0019 21.0 2.9 18 100-117 10-27 (102)
57 2l55_A SILB,silver efflux prot 24.3 1.1E+02 0.0038 19.5 4.2 55 55-116 6-61 (82)
58 1iby_A Nitrosocyanin; RED copp 23.0 77 0.0026 20.5 3.3 16 100-115 39-54 (112)
59 2vb2_X Copper protein, cation 21.0 1.8E+02 0.006 18.8 5.6 54 55-115 18-74 (88)
60 2wtp_A ORF131 protein, CZCE; m 20.2 44 0.0015 23.8 1.6 18 101-118 73-90 (131)
No 1
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-34 Score=225.40 Aligned_cols=132 Identities=18% Similarity=0.266 Sum_probs=120.0
Q ss_pred cceeEEEeCCeeEEEEEeecceecceeEEcCCccEEEEEEEEEEEEeecCCCEEEEEEEEEecccEEEEccccE-EEE--
Q 032315 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQ-IFC-- 78 (143)
Q Consensus 2 ~~~EG~~~~~~GliI~i~dI~~i~eG~I~~gdG~~~~~V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp~~-ifI-- 78 (143)
++|||||++++||||+++|+.++++|+|.||||+++|+|+|+|++||||+||+++|+|++++++|+|+++||.+ +++
T Consensus 32 ~~~egkv~~~~Gl~I~v~di~~i~~g~I~~GdG~~~~~V~fk~~~f~p~~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~ 111 (203)
T 3ayh_B 32 KKYANKVIQNIGLAICVYDFLKIGEGIIKYGDGSSYMNVVFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPK 111 (203)
T ss_dssp HHHTTEEETTTEEEEEEEEEEEECCCEECTTTCCEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECSSCCCEEEEG
T ss_pred hhhCCEEeCCccEEEEEEEeeEecccEEeCCCCCEEEEEEEEEEEEccCCCCEEEEEEEEEeccEEEEEEeCceEEEEcH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999966 666
Q ss_pred -EcCCCceecCCC-CceEEc------CCceEEEcCCCeEEEEEEEEEEc---------------------cCCeEEEEEc
Q 032315 79 -LIPDDMELQTGD-LPSYTT------SDGSVKIQKDCELWLKIIGTQVD---------------------VTEIEKARRE 129 (143)
Q Consensus 79 -~lp~~~~fd~~~-~~~~~~------~~~~~~i~~g~~VR~RV~~v~~~---------------------~~~~~ai~~~ 129 (143)
.+|+++.||+++ .|.|.+ ++++.+|+.|+.|||||.+++++ ...+.++|+|
T Consensus 112 ~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~gs~ 191 (203)
T 3ayh_B 112 DMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITGTEALESVSPYTLIASC 191 (203)
T ss_dssp GGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEEECC--------------------CCSEEEEEEB
T ss_pred HhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEEccccCCCCccccccccccccccCCCCeEEEEEe
Confidence 668889999886 577866 77889999999999999999993 3468899999
Q ss_pred cccc
Q 032315 130 VGKQ 133 (143)
Q Consensus 130 ~~~~ 133 (143)
-+++
T Consensus 192 ~~~g 195 (203)
T 3ayh_B 192 SRDG 195 (203)
T ss_dssp CSTT
T ss_pred cCCC
Confidence 7664
No 2
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-34 Score=220.94 Aligned_cols=130 Identities=38% Similarity=0.679 Sum_probs=121.9
Q ss_pred cceeEEEeCCeeEEEEEe--ecceecceeEEcCCccEEEEEEEEEEEEeecCCCEEEEEEEEEecccEEEEccccEEEE-
Q 032315 2 KDVEGTCSGRHGFAVAIT--GAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC- 78 (143)
Q Consensus 2 ~~~EG~~~~~~GliI~i~--dI~~i~eG~I~~gdG~~~~~V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp~~ifI- 78 (143)
+++||+|+++.|+||+++ ||.++++|+|.+|||+++|+|+|+|++|+|++||+++|+|++++++|+|+++||.++||
T Consensus 33 ~~~~g~vi~~~G~~I~i~~idi~~i~~G~I~~gdg~~~~~v~f~~ivf~p~~Gev~~G~V~~v~~fG~FV~l~~~~glVh 112 (172)
T 3h0g_G 33 ADVEGTCSGQYGYIICVLDSNTIDIDKGRVVPGQGFAEFEVKYRAVLWRPFRGEVVDAIVTTVNKMGFFANIGPLNVFVS 112 (172)
T ss_dssp HHHTTCEETTTEEEEEECTTTSEEECCCEECTTTCCEEEEEEEEEEEECCCTTCEEECCCCEEETTEEECCBTTBCCEEE
T ss_pred HHhCCcCcCCccEEEEEEeeeeeEeeCCEEECCCCcEEEEEEEEEeeeccCCCCEEEEEEEEEEcceEEEEeCCeEEEEE
Confidence 478999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred --EcCCCceecCC-CCceEEcCCceEEEcCCCeEEEEEEEEEEccCCeEEEEEccccc
Q 032315 79 --LIPDDMELQTG-DLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARREVGKQ 133 (143)
Q Consensus 79 --~lp~~~~fd~~-~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~~~ai~~~~~~~ 133 (143)
+||+++.||++ ++|+| ++++..++.||.||+||.+++++.++++|||+|-+++
T Consensus 113 ~s~l~~~~~~d~~~~~~~~--~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~Igtm~~~~ 168 (172)
T 3h0g_G 113 SHLVPPDMKFDPTANPPNY--SGEDQVIEKGSNVRLKIVGTRTDATEIFAIATMKEDY 168 (172)
T ss_dssp GGGSCTTCCCBSSSSSCBE--ESSSCEECSSCCEEEEEEEEEESSSCEEEEEECCSTT
T ss_pred HHHCCCccccCcccccceE--ecCCcEECCCCEEEEEEEEEECCCCCceEEEEcCCCC
Confidence 88888999987 46888 4566899999999999999999999999999987765
No 3
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-33 Score=218.92 Aligned_cols=120 Identities=14% Similarity=0.236 Sum_probs=109.3
Q ss_pred cceeEEEeCCeeEEEEEeecceecceeEEcCCccEEEEEEEEEEEEeecCCCEEEEEEEEEecccEEEEc-cccE-EEE-
Q 032315 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEA-GAVQ-IFC- 78 (143)
Q Consensus 2 ~~~EG~~~~~~GliI~i~dI~~i~eG~I~~gdG~~~~~V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~i-Gp~~-ifI- 78 (143)
++|||||++++|||||++||.++++|+|.||||+++|+|+|+|++||||+||+++|+|++++++|+|+++ ||.+ +++
T Consensus 32 ~kyegkv~~~~Gl~I~v~di~~i~eG~I~~GdG~~~~~V~fk~~~f~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~ 111 (218)
T 2ckz_B 32 NKFANKIIPNVGLCITIYDLLTVEEGQLKPGDGSSYINVTFRAVVFKPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIP 111 (218)
T ss_dssp HHHTTEEETTTEEEEEEEEEEEECCCEECSSSSCEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEE
T ss_pred HHhcCcCcCCccEEEEEEEeeeccCcEEeCCCCCEEEEEEEEEEEecCCCCCEEEEEEEEEccCcEEEEccCccceEEEc
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999 9966 666
Q ss_pred --EcCCCceecCCC-CceEEc-CCceEEEcCCCeEEEEEEEEEEccC
Q 032315 79 --LIPDDMELQTGD-LPSYTT-SDGSVKIQKDCELWLKIIGTQVDVT 121 (143)
Q Consensus 79 --~lp~~~~fd~~~-~~~~~~-~~~~~~i~~g~~VR~RV~~v~~~~~ 121 (143)
++|+++.||+++ .|+|.+ ++++.+|+.|+.|||||.+++++..
T Consensus 112 s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 112 QNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp TTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred HHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 567789999886 477766 6778999999999999999999764
No 4
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.97 E-value=1.1e-30 Score=199.59 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=107.6
Q ss_pred cceeEEEeCCeeEEEEEeecceecceeEEcCCccEEEEEEEEEEEEeecCCCEEEEEEEEEecccEEEEccccEEEE---
Q 032315 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC--- 78 (143)
Q Consensus 2 ~~~EG~~~~~~GliI~i~dI~~i~eG~I~~gdG~~~~~V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp~~ifI--- 78 (143)
+++||+|+++.|+||+++||.++++|+|.+|||+++++|+|++++|||++||+++|+|++++++|+|+++||.+.++
T Consensus 32 ~k~~~kv~~~~G~~I~v~di~~~~~g~I~~gdg~~~~~v~~~~iv~~p~~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s 111 (180)
T 4ayb_E 32 QQYQEKILKDLGLVLAILNVKTSEEGMLVFGDGATYHEVEFDMITYVPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHIS 111 (180)
T ss_dssp HHTTTCBCSSSCEEEEEEEEEEEEEEEECSSCSSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGG
T ss_pred HHhcCeEcCCCcEEEEeeeEeecCceeEccCchHHHHHHhhheeeeeccCCCEEEEEEeeeccceEEEEECCccceEEee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred EcCC-CceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccC
Q 032315 79 LIPD-DMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121 (143)
Q Consensus 79 ~lp~-~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~ 121 (143)
+|++ .+.||+++. .|..++++.+++.||.||+||.+++.+.+
T Consensus 112 ~l~~d~~~~d~~~~-~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 112 QITDDTLKYDNVRG-IIFGEKSKKVIQKGDKVRARVISVASTVT 154 (180)
T ss_dssp GSCSSCEEECSSSC-CEEETTTCCCCCTTCEEEEEEEEECC---
T ss_pred ecCCCccccchhcc-eEEEeccCeEECCCCEEEEEEEEEeCCCC
Confidence 5554 478998864 47778888999999999999999987654
No 5
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.97 E-value=4.2e-30 Score=195.32 Aligned_cols=131 Identities=43% Similarity=0.743 Sum_probs=123.0
Q ss_pred cceeEEEeCCeeEEEEEeecceecceeEEcCCccEEEEEEEEEEEEeecCCCEEEEEEEEEecccEEEEccccEEEE---
Q 032315 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC--- 78 (143)
Q Consensus 2 ~~~EG~~~~~~GliI~i~dI~~i~eG~I~~gdG~~~~~V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp~~ifI--- 78 (143)
.+++|+|+++.|+||+++||.++++|+|.||||.++++++|++++|+|+.||+++|+|++++++|+|+++||.++||
T Consensus 32 ~~~~~~vi~~~G~~I~~~di~~i~~g~i~~~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~v~~fG~fV~l~~~~glvhis 111 (172)
T 2c35_B 32 TEVEGTCTGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRH 111 (172)
T ss_dssp HHHTTCEETTTEEEEEEEEEEEECCCBCCTTCSSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEEETTEEEEEEGG
T ss_pred HHHcCcCcCCceEEEEEEEeeecCCeEEeCCCCCEEEEEEEEEEEeeCCCCCEEEEEEEEEeCCEEEEEECCEEEEEEHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCceecCCCC-ceEEcCCceEEEcCCCeEEEEEEEEEEccCCeEEEEEcccc
Q 032315 79 LIPDDMELQTGDL-PSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARREVGK 132 (143)
Q Consensus 79 ~lp~~~~fd~~~~-~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~~~ai~~~~~~ 132 (143)
+|++++.||+.++ |+|.+++++.+++.||.||+||.++.++.+++.++|+|-++
T Consensus 112 ~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~~igsm~~~ 166 (172)
T 2c35_B 112 SIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDD 166 (172)
T ss_dssp GSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEEEEEECCST
T ss_pred HCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcEEEEEecCC
Confidence 8888889998764 99999888899999999999999999999889999998554
No 6
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.96 E-value=3e-29 Score=190.70 Aligned_cols=130 Identities=28% Similarity=0.572 Sum_probs=106.0
Q ss_pred cceeEEEeCCeeEEEEEeecc--eecceeEEcCCccEEEEEEEEEEEEeecCCCEEEEEEEEEecccEEEEccccEEEE-
Q 032315 2 KDVEGTCSGRHGFAVAITGAE--SIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC- 78 (143)
Q Consensus 2 ~~~EG~~~~~~GliI~i~dI~--~i~eG~I~~gdG~~~~~V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp~~ifI- 78 (143)
.+++|+|+++.|+||+++||. ++++|+|.+|||.+++++.|++++|+|+.||+++|+|++++++|+|+++||.++||
T Consensus 32 ~~~i~~vig~~G~~I~~~di~~~di~~g~i~~~d~~~~~~~~~~~~~~~~~~Gev~~G~V~~v~~fG~FV~l~~~dglvh 111 (171)
T 1y14_B 32 EEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVT 111 (171)
T ss_dssp HHHTTEEETTTEEEEEECCGGGCBCC------------CEEEEEEEEECCCTTCEEEEEEEEEETTEEEEEETTEEEEEE
T ss_pred HHHcCcCcCCceEEEEEEEecccccCccEEeCCCCCEEEEEEEEEEEccCCCCCEEEEEEEEEecCEEEEEecCeEEEEE
Confidence 367899999999999999999 99999999999999999999999999999999999999999999999999988999
Q ss_pred --EcCCCceecCCC-CceEEcCCceEEEcCCCeEEEEEEEEEEccCCeEEEEEccccc
Q 032315 79 --LIPDDMELQTGD-LPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARREVGKQ 133 (143)
Q Consensus 79 --~lp~~~~fd~~~-~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~~~ai~~~~~~~ 133 (143)
+||+++.||+.+ .|+|.+++ ..++.||.||+||.++.++.+++.++|+|-+++
T Consensus 112 is~l~~~~~~d~~~~~~~~~~~~--~~~~~Gd~V~vkV~~vd~~~~~~~~igsm~~~~ 167 (171)
T 1y14_B 112 KHLMPQDLTFNAGSNPPSYQSSE--DVITIKSRIRVKIEGCISQVSSIHAIGSIKEDY 167 (171)
T ss_dssp GGGSCTTCEECC-----CEECSS--CEECTTCEEEEEEEEEEEETTEEEEEEECCSTT
T ss_pred HHHCCCCceECcccCceEEeccc--eEECCCCEEEEEEEEEEcCCCCcEEEEEcCCCC
Confidence 888888999876 58898866 459999999999999999999999999986553
No 7
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.96 E-value=8.8e-29 Score=195.25 Aligned_cols=130 Identities=28% Similarity=0.572 Sum_probs=121.2
Q ss_pred cceeEEEeCCeeEEEEEeecc--eecceeEEcCCccEEEEEEEEEEEEeecCCCEEEEEEEEEecccEEEEccccEEEE-
Q 032315 2 KDVEGTCSGRHGFAVAITGAE--SIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC- 78 (143)
Q Consensus 2 ~~~EG~~~~~~GliI~i~dI~--~i~eG~I~~gdG~~~~~V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp~~ifI- 78 (143)
.+++|+|+++.|+||+++||. ++++|+|.||||.+++++.|++++|+|++||+++|+|++++++|+|+++||.++||
T Consensus 32 ~~~ig~vIg~~G~vI~~~dI~~~di~dG~I~~gdg~~~~~v~~~~i~~~p~vGev~~G~V~~vt~fG~FVelg~~dGlVh 111 (215)
T 2b8k_G 32 EEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVT 111 (215)
T ss_dssp HSSTTCEETTTEEEEEECCSTTCBCCCEEECSSSCCEEEEEECCEEEECCCTTEEEEEEEEEEETTEEEEECTTSEEEEE
T ss_pred HHHCCeEcCCCCEEEEEEEeeecccccceEeCCCHHHHHHHHhhhheeccCCCCEEEEEEEEEecceEEEEecCcEEEEE
Confidence 478999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred --EcCCCceecCCC-CceEEcCCceEEEcCCCeEEEEEEEEEEccCCeEEEEEccccc
Q 032315 79 --LIPDDMELQTGD-LPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARREVGKQ 133 (143)
Q Consensus 79 --~lp~~~~fd~~~-~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~~~ai~~~~~~~ 133 (143)
+|++++.||+.+ .|.|.+++ ..++.||.||+||.++.++..++.++|+|-.++
T Consensus 112 iS~l~d~~~~d~~~~~w~~~~~~--~~~~~Gd~VrVkV~~vd~~~~~i~~IgSmk~~~ 167 (215)
T 2b8k_G 112 KHLMPQDLTFNAGSNPPSYQSSE--DVITIKSRIRVKIEGCISQVSSIHAIGSIKEDY 167 (215)
T ss_dssp GGGSCSSCCCBSSCSSCEEECSS--CEEETTCEEEEEEEEEEEETTEEEEEEECCSTT
T ss_pred HHHCCccceeccccccceeeccc--cEECCCCEEEEEEEEEEcCCCccEEEEEcCCCC
Confidence 888888999876 58998876 569999999999999999999999999986653
No 8
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.94 E-value=2.2e-26 Score=176.52 Aligned_cols=119 Identities=17% Similarity=0.238 Sum_probs=107.1
Q ss_pred cceeEEEeCCeeEEEEEeecceecceeEEcCCccEEEEEEEEEEEEeecCCCEEEEEEEEEecccEEEEccccEEEE---
Q 032315 2 KDVEGTCSGRHGFAVAITGAESIGKGLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC--- 78 (143)
Q Consensus 2 ~~~EG~~~~~~GliI~i~dI~~i~eG~I~~gdG~~~~~V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp~~ifI--- 78 (143)
+++||||.++.|+||+++||.+.++|+|.++||.+++++.|++++|+|+.||+++|+|++++++|+|+++||.+.++
T Consensus 32 ~~~~gk~~~~~G~~i~~idi~~~g~~~I~~~d~~~~~~~~~~~i~~~~~~Gev~~G~V~~v~~~G~fV~l~~~eglvhis 111 (187)
T 1go3_E 32 EKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVS 111 (187)
T ss_dssp HHHTTCEETTTEEEEEEEEEEEECCCBCCTTCCSEEEEEEEEEEEECCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGG
T ss_pred HHhCCeEcCCccEEEEEEEEeeccCCEEeCCCccEEEEEEEEEEEEccCCCCEEEEEEEEEeCcEEEEEEcCccEEEEhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ec-CCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccC
Q 032315 79 LI-PDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121 (143)
Q Consensus 79 ~l-p~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~ 121 (143)
++ ++.+.||+++. .|..++.+.+++.||.||+||.++..+.+
T Consensus 112 ~l~~~~~~~d~~~~-~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 112 QIMDDYVSYDPKRE-AIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp GSCSSCEEECCC---CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred HhCCCcceECCccc-eEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 44 45688998864 46666777899999999999999998765
No 9
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.8e-25 Score=171.76 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=93.8
Q ss_pred EEeCCe-eEEEEEeecceecc------------eeEEcCCccEEEEEEEEEEEEeecCCCEEEEEEEEEecccEEEE-cc
Q 032315 7 TCSGRH-GFAVAITGAESIGK------------GLIRNGTVLVTFLVRCQCIVFRPFKGEILGAGVTMVNKMGFLAE-AG 72 (143)
Q Consensus 7 ~~~~~~-GliI~i~dI~~i~e------------G~I~~gdG~~~~~V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~-iG 72 (143)
++.+++ |+|++++|+..+++ |+|.+|+|.++++|+|+++|||||+||+|+|+|+++++.|+.+. +|
T Consensus 72 ky~~~~~Gv~la~~di~~~~~~~~~~d~~~~~~g~I~~~~g~~~~~V~~~~iVFrPf~GevL~G~V~~~s~~~Ig~~~~G 151 (214)
T 2rf4_A 72 KYNNKVGGVVLGYEGLKILDADPLSKEDTSEKLIKITPDTPFGFTWCHVNLYVWQPQVGDVLEGYIFIQSASHIGLLIHD 151 (214)
T ss_dssp SEETTTTEEEEEEEEEETTSCCC-----------------CCCEEEEEEEEEEECCCTTCEEEEEECCCCSSCEEEEETT
T ss_pred cccCCCCEEEEEEECeEeccCCCcCccccccceeEEeCCCceEEEEEEEEEEEEecCCCCEEEEEEEEECCCcEEEEEeC
Confidence 455666 89999999865554 79999999999999999999999999999999999999998884 69
Q ss_pred ccEEEE---EcCCCceecCCC----CceEEcCCceEEEcCCCeEEEEEEEEEEccCCeEEEEEcc
Q 032315 73 AVQIFC---LIPDDMELQTGD----LPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIEKARREV 130 (143)
Q Consensus 73 p~~ifI---~lp~~~~fd~~~----~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~~~ai~~~~ 130 (143)
|+++|| .||+++.|++++ .++|..+++.. .|++|||||.+++.+..-+..-|+|+
T Consensus 152 ~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~---ig~~IRFrV~~~~~~~~~lsI~Gsll 213 (214)
T 2rf4_A 152 AFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEP---IDGKLRFTVRNVHTTGRVVSVDGTLI 213 (214)
T ss_dssp TEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCB---CCSEEEEEEEEEECCSSSCEEEEECC
T ss_pred CEEEEEcHHHCCCcccccccccccCCCceEcCCCCC---CCCEEEEEEEEEEecCCEEEEEEEec
Confidence 999999 999999998764 35666544332 59999999999998655455566653
No 10
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.29 E-value=1.4e-06 Score=57.57 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=48.0
Q ss_pred eecCCCEEEEEEEEEecccEEEEccc-cEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCCe
Q 032315 48 RPFKGEILGAGVTMVNKMGFLAEAGA-VQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEI 123 (143)
Q Consensus 48 rPf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~~ 123 (143)
.|..|+++.|+|++++++|+|+.+++ .++++.+.+ + .|.+. ..++.||.|++||.++..+.+++
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~se-l------~~~~~-----~~~~~Gd~V~v~V~~vd~~~~~i 66 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRD-M------ISLRL-----ENLNVGDEIIVQAIDVRPEKREI 66 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGG-C------SSCCG-----GGCCTTCEEEEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHH-C------Ccccc-----eeeCCCCEEEEEEEEEECCCCEE
Confidence 47789999999999999999999985 788882211 0 01010 35899999999999988765543
No 11
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.22 E-value=1e-06 Score=62.28 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=55.6
Q ss_pred EEEEEEEeecCCCEEEEEEEEEecccEEEEccc-cEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEc
Q 032315 41 RCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGA-VQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119 (143)
Q Consensus 41 ~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~ 119 (143)
.|..+..+|..|++++|+|++++++|+|+.+++ .++||.+.+ +.++. ..++.+..+++||.|++||.++..+
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhise-l~~~~------~~~~~~~~~~vGd~V~vkV~~vd~~ 92 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSE-MDWTN------KNIHPSKVVNVGDVVEVMVLDIDEE 92 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTS-SSCSS------TTCSSTTTCCTTCEEEEEEEEEETT
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHH-CCccc------cccCcccEECCCCEEEEEEEEEECC
Confidence 355566789999999999999999999999986 889983321 11110 0123345789999999999999875
Q ss_pred cCCe
Q 032315 120 VTEI 123 (143)
Q Consensus 120 ~~~~ 123 (143)
.+.+
T Consensus 93 ~~rI 96 (115)
T 2khi_A 93 RRRI 96 (115)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 5543
No 12
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=8.2e-07 Score=63.37 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=54.5
Q ss_pred EEEEEEEeecCCCEEEEEEEEEecccEEEEccc--cEEEE---EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEE
Q 032315 41 RCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGA--VQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115 (143)
Q Consensus 41 ~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp--~~ifI---~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~ 115 (143)
.++.+.+.|..|+++.|+|++++++|+|+.++. .+.|| .|+++. .++....++.||.|++||+.
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~-----------~~~~~~~~~~Gd~V~VkV~~ 80 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCR-----------VDKPSEIVDVGDKVWVKLIG 80 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSC-----------CSCHHHHCCTTCEEEEEEEE
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCccc-----------ccChhhcCCCCCEEEEEEEE
Confidence 366778899999999999999999999999954 48988 454221 12334568999999999999
Q ss_pred EEEcc
Q 032315 116 TQVDV 120 (143)
Q Consensus 116 v~~~~ 120 (143)
+..+.
T Consensus 81 vd~~~ 85 (119)
T 2cqo_A 81 REMKN 85 (119)
T ss_dssp EEECS
T ss_pred Eeccc
Confidence 98754
No 13
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.12 E-value=4.5e-06 Score=57.85 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=49.4
Q ss_pred EEeecCCCEEEEEEEEEecccEEEEcc----ccEEEE---EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEE
Q 032315 46 VFRPFKGEILGAGVTMVNKMGFLAEAG----AVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118 (143)
Q Consensus 46 vFrPf~gEVv~G~V~~v~~~Gi~v~iG----p~~ifI---~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~ 118 (143)
.+.|..|+++.|+|+++.++|+|+.++ ..+.|| .|+++. + .++....++.||.|++||+.+..
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~---------~-~~~~~~~~~~Gd~V~VkV~~vd~ 76 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREG---------R-VANVADVVSKGQRVKVKVLSFTG 76 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSS---------C-CCCHHHHCCTTCEEEEEEEEEET
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCc---------c-cCCcccEeCCCCEEEEEEEEEEC
Confidence 457889999999999999999999997 588998 443211 1 12334568999999999999864
No 14
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.99 E-value=7.5e-06 Score=57.08 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=48.5
Q ss_pred EeecCCCEEEEEEEEEecccEEEEccc-cEEEE---EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccC
Q 032315 47 FRPFKGEILGAGVTMVNKMGFLAEAGA-VQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI---~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~ 121 (143)
..+..|+++.|+|++++++|+|+.+++ .++|| .++++ + .++-...+++||.|++||..+..+..
T Consensus 27 ~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~----------~-~~~~~~~~~vGd~V~v~V~~vd~~~~ 94 (109)
T 2khj_A 27 ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRD----------R-VEDATLVLSVGDEVEAKFTGVDRKNR 94 (109)
T ss_dssp TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSS----------S-SSSGGGSCCTTCEEEEEEEEEETTTT
T ss_pred hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcc----------c-ccChhhccCCCCEEEEEEEEEECCCC
Confidence 356789999999999999999999986 77777 22211 1 12233568999999999999876543
No 15
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=97.98 E-value=1.7e-05 Score=60.62 Aligned_cols=66 Identities=11% Similarity=0.109 Sum_probs=45.1
Q ss_pred ecCCCEEEEEEEEEecccEEEEc---cccEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCC
Q 032315 49 PFKGEILGAGVTMVNKMGFLAEA---GAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTE 122 (143)
Q Consensus 49 Pf~gEVv~G~V~~v~~~Gi~v~i---Gp~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~ 122 (143)
|..|+++.|+|++++++|+|+.+ +..+++|.+.+ + .|.+ .++-+..+++|+.|++||+++.-+.+.
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSe-l------s~~~-v~~~~~~~~vGd~V~VkVl~vD~~~~r 81 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSE-L------SRRR-IRSINKLIRIGRNECVVVIRVDKEKGY 81 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGG-C-------------------CTTCEEEEEEEEEETTTTE
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHH-C------CCcc-cCCHHHhcCCCCEEEEEEEEEECCCCE
Confidence 68999999999999999999999 45899883321 0 1111 123346799999999999998765444
No 16
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=97.91 E-value=2.8e-05 Score=58.97 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=47.8
Q ss_pred ecCCCEEEEEEEEEecccEEEEc---cccEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCC
Q 032315 49 PFKGEILGAGVTMVNKMGFLAEA---GAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTE 122 (143)
Q Consensus 49 Pf~gEVv~G~V~~v~~~Gi~v~i---Gp~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~ 122 (143)
|-.|+++.|+|++++++|+|+.+ +..+++|.+.+ + .|.| .++-+..+++|+.|++||+++..+.+.
T Consensus 13 p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSe-l------s~~~-v~~~~~~~~vGd~V~vkVl~vd~~~~~ 81 (175)
T 2a19_A 13 PEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSE-L------SRRR-IRSIQKLIRVGKNDVAVVLRVDKEKGY 81 (175)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC----------------CCCCCCCTTSEEEEEEEEEETTTTE
T ss_pred CCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHH-c------CCcc-cCCHHHcCCCCCEEEEEEEEEECCCCe
Confidence 55899999999999999999999 45889883321 0 1111 123346789999999999998765544
No 17
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=97.90 E-value=1.9e-05 Score=56.96 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=48.5
Q ss_pred eecCCCEEEEEEEEEecccEEEEcc-ccEEEE---EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccC
Q 032315 48 RPFKGEILGAGVTMVNKMGFLAEAG-AVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121 (143)
Q Consensus 48 rPf~gEVv~G~V~~v~~~Gi~v~iG-p~~ifI---~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~ 121 (143)
.+..|+++.|+|++++++|+||.++ ..++|| .|.++. ..+-...+++||.|++||+.+..+..
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~-----------~~~~~~~~~vGd~V~vkV~~vd~~~~ 70 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGF-----------VKDINEHLSVGDEVQVKVLAVDEEKG 70 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSC-----------CSCGGGTCCTTCEEEEEEEEEETTTT
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCccc-----------ccCccccCCCCCEEEEEEEEEeCCCC
Confidence 4678999999999999999999995 488988 443221 11223568999999999999986443
No 18
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=97.73 E-value=1.2e-05 Score=56.90 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=46.9
Q ss_pred eecCCCEEEEEEEEEecccEEEEccc--cEEEE--EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCC
Q 032315 48 RPFKGEILGAGVTMVNKMGFLAEAGA--VQIFC--LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTE 122 (143)
Q Consensus 48 rPf~gEVv~G~V~~v~~~Gi~v~iGp--~~ifI--~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~ 122 (143)
.+..|++++|+|++++++|+|+.+++ ...++ .+.++ | +..++-+..++.||.|++||.++..+.+.
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~--------~-~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 87 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQE--------Y-IRQKNKGAKLKVGQYLNCIVEKVKGNGGV 87 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHH--------H-HHHHSSSCCCCTTCEEEEEEEECCTTSCE
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccc--------c-ccccCccCEeCCCCEEEEEEEEEeCCCCE
Confidence 36789999999999999999999993 55555 22111 1 11112235789999999999997655443
No 19
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=97.72 E-value=1.4e-05 Score=54.16 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=46.9
Q ss_pred eecCCCEEEEEEEEEecccEEEEcc---ccEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCCe
Q 032315 48 RPFKGEILGAGVTMVNKMGFLAEAG---AVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEI 123 (143)
Q Consensus 48 rPf~gEVv~G~V~~v~~~Gi~v~iG---p~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~~ 123 (143)
.|..|++++|+|+ ++++|+|+.+. ..+++|.+...+ .|-|.... +..+ .|+.|++||+++..+.+++
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el------~~~~~~~~-~~~~-~Gd~V~VkV~~vd~~~~kI 77 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKM------HMDRYVEY-RDKL-VGKTVKVKVIRVDYTKGYI 77 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSC------CHHHHHHH-HHHH-TTCEEEEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHh------CcccccCH-hHEe-CCCEEEEEEEEEECCCCEE
Confidence 4889999999999 99999999995 378988332011 11111111 2234 9999999999998765553
No 20
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.69 E-value=8.1e-05 Score=56.53 Aligned_cols=64 Identities=3% Similarity=0.020 Sum_probs=51.4
Q ss_pred EeecCCCEEEEEEEEEecccEEEEccc--cEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEc
Q 032315 47 FRPFKGEILGAGVTMVNKMGFLAEAGA--VQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVD 119 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~Gi~v~iGp--~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~ 119 (143)
|.|..|++|.|.|++++..++++++|+ .+.++.+. .|+... ++.+..+++||.|++||.++.-+
T Consensus 3 Y~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s---~~~g~~------k~~r~~l~~GDlV~ArV~~~~~~ 68 (175)
T 2ja9_A 3 YIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYM---AFPNAS------KKNRPTLQVGDLVYARVCTAEKE 68 (175)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETT---SSTTCC------SSSCCCCCTTCEEEEEEEECCTT
T ss_pred ccCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHH---HCCchh------hhhhccCCCCCEEEEEEEEecCC
Confidence 789999999999999999999999987 77877332 244221 34567899999999999987654
No 21
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.66 E-value=0.00012 Score=65.25 Aligned_cols=75 Identities=9% Similarity=0.125 Sum_probs=59.5
Q ss_pred EeecCCC--EEEEEEEEEecccEEEEcc-c-cEEEE---EcCC---CceecCCCCceEEcCCceEEEcCCCeEEEEEEEE
Q 032315 47 FRPFKGE--ILGAGVTMVNKMGFLAEAG-A-VQIFC---LIPD---DMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116 (143)
Q Consensus 47 FrPf~gE--Vv~G~V~~v~~~Gi~v~iG-p-~~ifI---~lp~---~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v 116 (143)
+++..|| +.+|+|++++++|+||.+. + .+++| .|++ .+.||+.....+. +++..++.||.|++||.++
T Consensus 554 l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~--~~~~~~~lGD~V~VkV~~v 631 (644)
T 2id0_A 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQI--KGETVYKVTDVIDVTIAEV 631 (644)
T ss_dssp HGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEE--TTEEEEETTCEEEEEEEEE
T ss_pred hhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEe--cCCCEeCCCCEEEEEEEEE
Confidence 5677899 9999999999999999994 4 88999 6653 3677776543323 5668899999999999999
Q ss_pred EEccCCe
Q 032315 117 QVDVTEI 123 (143)
Q Consensus 117 ~~~~~~~ 123 (143)
......+
T Consensus 632 d~~~~~I 638 (644)
T 2id0_A 632 RMETRSI 638 (644)
T ss_dssp ETTTTEE
T ss_pred eCCCCEE
Confidence 8876554
No 22
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.50 E-value=0.00021 Score=56.20 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=49.8
Q ss_pred EeecCCCEEEEEEEEEecccEEEEcc-ccEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEE
Q 032315 47 FRPFKGEILGAGVTMVNKMGFLAEAG-AVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~Gi~v~iG-p~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~ 118 (143)
|.|..|++|.|+|+++++.|++++++ |.+.+|.+.+ +... .+ .++-+..+++||.|++||+++.-
T Consensus 53 y~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~ise---v~~~-~~---~~~~~~~l~~GD~V~arVi~v~~ 118 (229)
T 2ba0_A 53 YTPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSE---NPEM-KP---NKKPNEVLDIGDAIIAKVLNIDP 118 (229)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGG---CTTC-CT---TSCGGGTCCTTCEEEEEEEEECT
T ss_pred ccCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHH---cccc-cc---ccchhcccCCCCEEEEEEEEECC
Confidence 78999999999999999999999998 7898883321 1111 11 12344678999999999998853
No 23
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=97.46 E-value=0.00012 Score=57.52 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=48.9
Q ss_pred EeecCCCEEEEEEEEEecccEEEEcc-ccEEEE---EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEE
Q 032315 47 FRPFKGEILGAGVTMVNKMGFLAEAG-AVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~Gi~v~iG-p~~ifI---~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~ 117 (143)
|.|..|+++.|+|+++++.|+|+++| +.+.+| ++.+ +....+ ..+-+..+++||.|++||+++.
T Consensus 62 y~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~----~~~~~~---~~~~~~~l~~GD~V~a~Vi~v~ 129 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLG----RPFNPA---VDDMQSLLKVGDYIKAKVVAFD 129 (235)
T ss_dssp CCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHT----SCCCTT---TTCCTTSSCTTCEEEEEEEEEC
T ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCC----Cccccc---hhhHhhcCCCCCEEEEEEEEEC
Confidence 78999999999999999999999998 699988 3332 111111 1122357899999999999986
No 24
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=97.46 E-value=0.00024 Score=57.37 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=49.3
Q ss_pred eecCCCEEEEEEEEEecccEEEEcc---ccEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCC
Q 032315 48 RPFKGEILGAGVTMVNKMGFLAEAG---AVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTE 122 (143)
Q Consensus 48 rPf~gEVv~G~V~~v~~~Gi~v~iG---p~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~ 122 (143)
.|..|+++.|+|+++.++|+|+.++ ..++||.+.+- .|.|. ++-...+++|+.|++||+++..+.+.
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSel-------s~~~v-~~~~~~~kvGd~V~vkVi~vD~~~~~ 77 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEV-------ASTWV-RNIRDYLKEGQKVVAKVIRVDPRKGH 77 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGS-------CSSCC-SCGGGTCCTTCEEEEEEEEEETTTTE
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHc-------Ccccc-cCHHhccCCCCEEEEEEEEEECCCCE
Confidence 4668999999999999999999996 48899933210 01111 12235689999999999998865544
No 25
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=97.43 E-value=0.00022 Score=58.49 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=48.6
Q ss_pred ecCCCEEEEEEEEEecccEEEEcc---ccEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCC
Q 032315 49 PFKGEILGAGVTMVNKMGFLAEAG---AVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTE 122 (143)
Q Consensus 49 Pf~gEVv~G~V~~v~~~Gi~v~iG---p~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~ 122 (143)
|..|+++.|+|++++++|+|+.++ ..++||.+.+ + .|.| .++-...+++|+.|++||+.+..+.+.
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSe-l------s~~~-i~~~~~~~kvGd~V~VkVl~vD~~~~r 79 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSE-L------SRRR-IRSINKLIRIGRNECVKVIRVDKEKGY 79 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGG-T------SCSS-CSCCTTTCSSSCEEEEEEEEEETTTTE
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHH-c------Cccc-ccCHHHhcCCCCEEEEEEEEEeCCCCE
Confidence 568999999999999999999996 4889983221 0 1111 122335689999999999998865444
No 26
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=97.41 E-value=0.0002 Score=57.04 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=49.4
Q ss_pred EEeecCCCEEEEEEEEEecccEEEEcc-ccEEEE---EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEE
Q 032315 46 VFRPFKGEILGAGVTMVNKMGFLAEAG-AVQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118 (143)
Q Consensus 46 vFrPf~gEVv~G~V~~v~~~Gi~v~iG-p~~ifI---~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~ 118 (143)
.|.|..|++|.|+|+++++.|+|+++| |.+.+| ++.+. .-+.+ .+-...+++||.|++||+++.-
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~-~~~~~-------~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGR-SINVG-------EDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTS-CCCTT-------CCCSSSCCTTCEEEEEEEEEET
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCC-ccccc-------cchhhcCCCCCEEEEEEEEECC
Confidence 478999999999999999999999998 699988 33211 00110 2223578999999999999863
No 27
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.33 E-value=0.0002 Score=49.46 Aligned_cols=55 Identities=13% Similarity=0.210 Sum_probs=49.4
Q ss_pred ecceeEEcCCccEEEEEEEEEEE---E---eecCCCEEEEEEEEEecccEEEEccc-cEEEE
Q 032315 24 IGKGLIRNGTVLVTFLVRCQCIV---F---RPFKGEILGAGVTMVNKMGFLAEAGA-VQIFC 78 (143)
Q Consensus 24 i~eG~I~~gdG~~~~~V~F~~lv---F---rPf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI 78 (143)
-+-|.|.+.+|...+-|++++|. | +|..||+++++|++++++|+|+.+.+ .+.+|
T Consensus 28 kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlv 89 (101)
T 2bh8_A 28 KGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLV 89 (101)
T ss_dssp GTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEE
Confidence 46689999999999999999998 4 79999999999999999999999954 88887
No 28
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.26 E-value=4.1e-05 Score=69.20 Aligned_cols=88 Identities=17% Similarity=0.089 Sum_probs=0.0
Q ss_pred ecceecceeEEcCCccEEEEE--EEEEEEEeecCCCEEEEEEEEEecccEEEEccc-cEEEE---EcCCCceecCCCCce
Q 032315 20 GAESIGKGLIRNGTVLVTFLV--RCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGA-VQIFC---LIPDDMELQTGDLPS 93 (143)
Q Consensus 20 dI~~i~eG~I~~gdG~~~~~V--~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI---~lp~~~~fd~~~~~~ 93 (143)
||.+-+.-.|...+....... .++.++..|..|++++|+|+++.++|+|+.++| .++|| +|.++
T Consensus 594 dI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~---------- 663 (723)
T 3cdi_A 594 EIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADK---------- 663 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCc----------
Confidence 454444444544454443322 567788999999999999999999999999987 77887 34211
Q ss_pred EEcCCceEEEcCCCeEEEEEEEEEE
Q 032315 94 YTTSDGSVKIQKDCELWLKIIGTQV 118 (143)
Q Consensus 94 ~~~~~~~~~i~~g~~VR~RV~~v~~ 118 (143)
+ .++.+..++.||.|++||+++.-
T Consensus 664 ~-v~~~~~~~~vGd~V~VkVi~vd~ 687 (723)
T 3cdi_A 664 R-VEKVTDYLQMGQEVPVKVLEVDR 687 (723)
T ss_dssp -------------------------
T ss_pred c-ccCcccccCCCCEEEEEEEEECC
Confidence 1 12334679999999999999875
No 29
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.23 E-value=1.1e-05 Score=72.96 Aligned_cols=88 Identities=13% Similarity=0.034 Sum_probs=5.9
Q ss_pred ecceecceeEEcCCccEEEE--EEEEEEEEeecCCCEEEEEEEEEecccEEEEccc-cEEEE---EcCCCceecCCCCce
Q 032315 20 GAESIGKGLIRNGTVLVTFL--VRCQCIVFRPFKGEILGAGVTMVNKMGFLAEAGA-VQIFC---LIPDDMELQTGDLPS 93 (143)
Q Consensus 20 dI~~i~eG~I~~gdG~~~~~--V~F~~lvFrPf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI---~lp~~~~fd~~~~~~ 93 (143)
||.+-+.-+|...|+.+... -.++.++..|..|++++|+|+++.++|+||.+.| .+.+| +|.++
T Consensus 604 di~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~---------- 673 (726)
T 4aid_A 604 DINDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNE---------- 673 (726)
T ss_dssp ----------CCSCHHHHHHHHHC--------------------------------------------------------
T ss_pred eEECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcc----------
Confidence 34444455555555544433 4588899999999999999999999999999977 78877 34311
Q ss_pred EEcCCceEEEcCCCeEEEEEEEEEE
Q 032315 94 YTTSDGSVKIQKDCELWLKIIGTQV 118 (143)
Q Consensus 94 ~~~~~~~~~i~~g~~VR~RV~~v~~ 118 (143)
+ .++-+..+++||.|++||+++.-
T Consensus 674 r-v~~~~d~~kvGD~V~VkVi~iD~ 697 (726)
T 4aid_A 674 R-VAKPSDVLKEGQMVKVKLLGFDD 697 (726)
T ss_dssp -------------------------
T ss_pred c-ccCccccCCCCCEEEEEEEEECC
Confidence 1 12334679999999999999874
No 30
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=97.05 E-value=0.00013 Score=66.58 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=47.9
Q ss_pred ecCCCEEEEEEEEEecccEEEEccc-cEEEE---EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEcc
Q 032315 49 PFKGEILGAGVTMVNKMGFLAEAGA-VQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDV 120 (143)
Q Consensus 49 Pf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI---~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~ 120 (143)
...|+++.|+|++++++|+||.+|+ .+++| .|.+...+ +....+++|+.|++||+++..+.
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~-----------d~~~~~~vGd~V~VkVi~VD~~~ 716 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVK-----------DPYEVVKAGDIVKVKVMEVDIPR 716 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCS-----------CHHHHCCTTCCCCCBEEEEETTT
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccC-----------ChhheeCCCCEEEEEEEEEECCC
Confidence 5689999999999999999999997 78999 44322111 22356899999999999987644
No 31
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=97.03 E-value=0.00094 Score=50.41 Aligned_cols=61 Identities=15% Similarity=0.018 Sum_probs=44.3
Q ss_pred EEeecCCCEEEEEEEEEecccEEEEccc-----------cEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEE
Q 032315 46 VFRPFKGEILGAGVTMVNKMGFLAEAGA-----------VQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKII 114 (143)
Q Consensus 46 vFrPf~gEVv~G~V~~v~~~Gi~v~iGp-----------~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~ 114 (143)
-+.|. |+++.|+|+++++.|+|+++++ .+.+|.+.+- . |.+. ++-...+++||.|++||+
T Consensus 53 ~y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei---~----~~~~-~~~~~~~~~GD~V~akVi 123 (179)
T 3m7n_A 53 PEIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNV---D----EGYV-KEISEAVGYLDILKARVI 123 (179)
T ss_dssp CCCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGT---T----SSCC-SSGGGTCCTTCEEEEEEE
T ss_pred cccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHc---C----cchh-hCHhhcCCCCCEEEEEEE
Confidence 36688 9999999999999999999964 5677733210 0 1111 223467899999999999
Q ss_pred E
Q 032315 115 G 115 (143)
Q Consensus 115 ~ 115 (143)
+
T Consensus 124 ~ 124 (179)
T 3m7n_A 124 G 124 (179)
T ss_dssp E
T ss_pred C
Confidence 7
No 32
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0018 Score=61.50 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=48.3
Q ss_pred ecCCCEEEEEEEEEecccEEEEccc-cEEEE---EcCCCc-eecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccC
Q 032315 49 PFKGEILGAGVTMVNKMGFLAEAGA-VQIFC---LIPDDM-ELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVT 121 (143)
Q Consensus 49 Pf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI---~lp~~~-~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~ 121 (143)
...|+++.|+|++++++|+||.+++ .+++| .|++.. ..++. ..+++|+.|++||+++..+..
T Consensus 900 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~-----------~v~kvGd~V~vkVl~VD~~~~ 966 (1219)
T 3psi_A 900 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPAN-----------EIYEIGKTYPAKVIYIDYANI 966 (1219)
T ss_dssp SCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCST-----------TTSCTTCEEEEEEEEEEGGGT
T ss_pred CCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHH-----------HcCCCCCEEEEEEEEEECCCC
Confidence 4579999999999999999999987 88999 554332 22222 457999999999999876443
No 33
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0012 Score=61.44 Aligned_cols=71 Identities=8% Similarity=-0.051 Sum_probs=56.6
Q ss_pred EeecCCCEEEEEEEEEecccEEEEccc--cEEEE---EcC--C-CceecCCCCceEEcCC----ceEEEcCCCeEEEEEE
Q 032315 47 FRPFKGEILGAGVTMVNKMGFLAEAGA--VQIFC---LIP--D-DMELQTGDLPSYTTSD----GSVKIQKDCELWLKII 114 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~Gi~v~iGp--~~ifI---~lp--~-~~~fd~~~~~~~~~~~----~~~~i~~g~~VR~RV~ 114 (143)
+++. ||+.+|+|+.++++|+||.+.+ .+.+| .|+ + .++||+... ....++ .+..++.||.|++||.
T Consensus 883 l~~~-ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~-~L~g~~~~g~~~~~~~lGD~V~VkV~ 960 (977)
T 2wp8_J 883 MRNN-ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEY-KLTFVPTNSDKPRDVYVFDKVEVQVR 960 (977)
T ss_dssp HHHT-TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTT-EEEECCTTCCSCEEEETTCEEEEEEC
T ss_pred hccc-ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEccccc-EEEeecCCCccCcEEccCCEEEEEEE
Confidence 4555 9999999999999999999975 78888 664 3 378998764 344554 3689999999999999
Q ss_pred EEEEc
Q 032315 115 GTQVD 119 (143)
Q Consensus 115 ~v~~~ 119 (143)
.+.-+
T Consensus 961 ~vd~~ 965 (977)
T 2wp8_J 961 SVMDP 965 (977)
T ss_dssp CCCCS
T ss_pred EEcCc
Confidence 87653
No 34
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=96.94 E-value=0.00053 Score=53.16 Aligned_cols=64 Identities=13% Similarity=-0.032 Sum_probs=43.3
Q ss_pred EeecCCCEEEEEEEEEecccEEEEcc---------ccEEEEEcCCCceecCCCCceEEc-CCceEEEcCCCeEEEEEEEE
Q 032315 47 FRPFKGEILGAGVTMVNKMGFLAEAG---------AVQIFCLIPDDMELQTGDLPSYTT-SDGSVKIQKDCELWLKIIGT 116 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~Gi~v~iG---------p~~ifI~lp~~~~fd~~~~~~~~~-~~~~~~i~~g~~VR~RV~~v 116 (143)
+.|..|++|.|+|+++++.|+|++++ +++.+|.+.+ -.|.... .+-...+++||.|++||+++
T Consensus 77 y~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhise-------i~~~~~~~~~~~~~l~~GD~V~akVisi 149 (209)
T 2nn6_I 77 LLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKED-------VRATEKDKVEIYKSFRPGDIVLAKVISL 149 (209)
T ss_dssp CCCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEG-------GGTCSSCCCCGGGTCCSSSEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHH-------cccccccccchhhhcCCCCEEEEEEEEE
Confidence 68999999999999999999999874 2333331100 0000000 02235689999999999998
Q ss_pred E
Q 032315 117 Q 117 (143)
Q Consensus 117 ~ 117 (143)
.
T Consensus 150 ~ 150 (209)
T 2nn6_I 150 G 150 (209)
T ss_dssp E
T ss_pred e
Confidence 4
No 35
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.94 E-value=0.00028 Score=57.89 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=48.6
Q ss_pred EeecCCCEEEEEEEEEecccEEEEcc-ccEEEEEcCCCceecCCCCceEEc----CCceEEEcCCCeEEEEEEEEE
Q 032315 47 FRPFKGEILGAGVTMVNKMGFLAEAG-AVQIFCLIPDDMELQTGDLPSYTT----SDGSVKIQKDCELWLKIIGTQ 117 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~Gi~v~iG-p~~ifI~lp~~~~fd~~~~~~~~~----~~~~~~i~~g~~VR~RV~~v~ 117 (143)
|.|..|++|.|+|+++++.|++++++ |.+.++.++ .+.|+.... .-.. .+....+++||.||+||+++.
T Consensus 91 Y~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS-~v~f~gg~i-R~~~~~D~~~m~~~l~vGDlV~ArVisv~ 164 (308)
T 2nn6_H 91 YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLS-SMNLPGGEL-RRRSAEDELAMRGFLQEGDLISAEVQAVF 164 (308)
T ss_dssp CCCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESS-CCC--------------CHHHHHHSCSSCEECCEEEEEE
T ss_pred cCCCCCCEEEEEEEEEeCceEEEEECCCcCCceech-hhcccccee-ecccchhhhhhhccCCCCCEEEEEEEEcC
Confidence 78999999999999999999999998 788777443 222221110 0000 112357999999999999987
No 36
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=96.85 E-value=0.00032 Score=56.32 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=46.3
Q ss_pred eecCCCEEEEEEEEEecccEEEEcc--c-cEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEE
Q 032315 48 RPFKGEILGAGVTMVNKMGFLAEAG--A-VQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQV 118 (143)
Q Consensus 48 rPf~gEVv~G~V~~v~~~Gi~v~iG--p-~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~ 118 (143)
.|..|+++.|+|+++.++|+|+.++ + .++||.+.+ + .|.| .++-...++.|+.|++||+.+.-
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSe-l------s~~~-v~~~~~~~~vGd~V~VkVi~vd~ 73 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSE-V------SSKW-VKNIRDVLKENRKVIVKVIRVDR 73 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGG-S------SCSS-CCCHHHHSCTTCEEEEEECCCCS
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHH-c------Cccc-ccCHHHhCcCCCEEEEEEEEEeC
Confidence 4788999999999999999999995 4 778872211 0 0111 12334568999999999999854
No 37
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=96.71 E-value=0.0027 Score=57.54 Aligned_cols=70 Identities=9% Similarity=-0.050 Sum_probs=51.1
Q ss_pred eecCCCEEEEEEEEEecccEEEEccc--cEEEE---EcC--C-CceecCCCCceEEcCCc----eEEEcCCCeEEEEEEE
Q 032315 48 RPFKGEILGAGVTMVNKMGFLAEAGA--VQIFC---LIP--D-DMELQTGDLPSYTTSDG----SVKIQKDCELWLKIIG 115 (143)
Q Consensus 48 rPf~gEVv~G~V~~v~~~Gi~v~iGp--~~ifI---~lp--~-~~~fd~~~~~~~~~~~~----~~~i~~g~~VR~RV~~ 115 (143)
+... ++.+|+|++++++|+||.+.. .+++| .|. + .+.||+... ....+++ +..++.||.|++||..
T Consensus 667 ~~~~-~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~-~l~g~~~~~~~~~~~~lGD~V~VkV~~ 744 (760)
T 2vnu_D 667 RNNE-STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEY-KLTFVPTNSDKPRDVYVFDKVEVQVRS 744 (760)
T ss_dssp HTCC-SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTT-EEEECCTTCSSCEEEETTCEEEEEEC-
T ss_pred hcCc-eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEccccc-EEEEecCCCccCcEEecCCEEEEEEEE
Confidence 3444 899999999999999999965 78888 563 3 378998764 3444443 6899999999999999
Q ss_pred EEEc
Q 032315 116 TQVD 119 (143)
Q Consensus 116 v~~~ 119 (143)
+..+
T Consensus 745 vd~~ 748 (760)
T 2vnu_D 745 VMDP 748 (760)
T ss_dssp ----
T ss_pred EECc
Confidence 8765
No 38
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.00064 Score=63.59 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred ecCCCEEEEEEEEEecccEEEEccc-cEEEE---EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCC
Q 032315 49 PFKGEILGAGVTMVNKMGFLAEAGA-VQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTE 122 (143)
Q Consensus 49 Pf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI---~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~ 122 (143)
...|+++.|+|++++++|+||.+++ .+++| .|.+.. | . .+-...+++|+.|++||+++..+...
T Consensus 903 l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~-~--------v-~~~~~v~kvGd~V~vkVl~VD~~~~r 970 (1030)
T 3psf_A 903 FFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQ-L--------R-RPANEIYEIGKTYPAKVIYIDYANIT 970 (1030)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred hcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCc-c--------c-CCHHHcCCCCCEEEEEEEEEECCCCE
Confidence 4579999999999999999999986 78877 444321 0 1 11125689999999999998765433
No 39
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.30 E-value=5.6e-05 Score=68.65 Aligned_cols=71 Identities=11% Similarity=-0.016 Sum_probs=32.2
Q ss_pred EEEEEE--EeecCCCEEEEEEEEEecccEEEEccc-cEEEE---EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEE
Q 032315 41 RCQCIV--FRPFKGEILGAGVTMVNKMGFLAEAGA-VQIFC---LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKII 114 (143)
Q Consensus 41 ~F~~lv--FrPf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI---~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~ 114 (143)
..+.++ ..|..|+++.|+|+++.++|+|+++.| .+++| +|.. -..|-+ .++-...++.||.|++||+
T Consensus 655 ~i~~i~~p~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~------~~s~~r-v~~~~~~~~vGd~V~VkVi 727 (757)
T 1e3p_A 655 TINGIANPTSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRK------LAGGKR-VENVEDVLGVGQKVQVEIA 727 (757)
T ss_dssp ------------------CBEEECC-CSCEECCC---CCCCC--------------------------CCSSCBCCCCCC
T ss_pred HHHHhcchhhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhcc------ccCCCc-ccCcccccCCCCEEEEEEE
Confidence 356677 889999999999999999999999977 77766 3300 001111 1233467999999999999
Q ss_pred EEEE
Q 032315 115 GTQV 118 (143)
Q Consensus 115 ~v~~ 118 (143)
++.-
T Consensus 728 ~vd~ 731 (757)
T 1e3p_A 728 EIDS 731 (757)
T ss_dssp CCCS
T ss_pred EECC
Confidence 8865
No 40
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.013 Score=47.30 Aligned_cols=56 Identities=13% Similarity=-0.016 Sum_probs=44.2
Q ss_pred CCCEEEEEEEEEecccEEE-Eccc-cEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCC
Q 032315 51 KGEILGAGVTMVNKMGFLA-EAGA-VQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTE 122 (143)
Q Consensus 51 ~gEVv~G~V~~v~~~Gi~v-~iGp-~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~ 122 (143)
.|++++|+|.+++++|+|+ .+.+ .++||...+-+ ..++.|++|.+||+.++-+.++
T Consensus 152 ~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~----------------~~l~~Gd~v~~~V~~id~~d~k 209 (285)
T 3go5_A 152 QNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERY----------------AEPRLGQVLDARVIGFREVDRT 209 (285)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCS----------------SCCCTTCEEEEEEEEEETTTTE
T ss_pred CCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHcc----------------ccCCCCCEEEEEEEEEECCCCe
Confidence 6899999999999999999 9977 88888221100 1379999999999999864443
No 41
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.79 E-value=0.089 Score=43.66 Aligned_cols=59 Identities=17% Similarity=0.026 Sum_probs=45.0
Q ss_pred eecCCCEEEEEEEEEecccEEEEccccEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEcc
Q 032315 48 RPFKGEILGAGVTMVNKMGFLAEAGAVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDV 120 (143)
Q Consensus 48 rPf~gEVv~G~V~~v~~~Gi~v~iGp~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~ 120 (143)
+...|+++.|+|.++++.|+++.+|-.+.++...+- .++ ..+++||.|++.|..+.-+.
T Consensus 131 ~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~sE~---ip~-----------E~~~vGD~Vkv~V~~V~~~~ 189 (344)
T 1hh2_P 131 SELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEW---IPG-----------EEIKAGDLVKVYIIDVVKTT 189 (344)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEEETTEEEEEEGGGS---CTT-----------CCCCTTCEEEEEEEEEEEET
T ss_pred hhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHHHc---CCC-----------cCCCCCCEEEEEEEEEEcCC
Confidence 445699999999999999999999977887722100 011 25799999999999988654
No 42
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.32 E-value=0.095 Score=43.89 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=46.2
Q ss_pred EeecCCCEEEEEEEE----EecccEEEEccc----cEEEE----EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEE
Q 032315 47 FRPFKGEILGAGVTM----VNKMGFLAEAGA----VQIFC----LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKII 114 (143)
Q Consensus 47 FrPf~gEVv~G~V~~----v~~~Gi~v~iGp----~~ifI----~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~ 114 (143)
|+...||++.|+|.. ++..++++.+|- .+.++ ++| . ..|++||.||+-|.
T Consensus 126 f~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP-------~-----------E~~~~GDrVkvyV~ 187 (366)
T 1k0r_A 126 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVP-------G-----------ESYEHGNRLRCYVV 187 (366)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCT-------T-----------CCCCTTCEEEEEEE
T ss_pred HHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCC-------C-----------ccCCCCCEEEEEEE
Confidence 567799999999999 999999999997 77766 222 1 25799999999999
Q ss_pred EEEEccC
Q 032315 115 GTQVDVT 121 (143)
Q Consensus 115 ~v~~~~~ 121 (143)
.+.-++.
T Consensus 188 ~V~~~~k 194 (366)
T 1k0r_A 188 GVTRGAR 194 (366)
T ss_dssp EEECCSS
T ss_pred EEecCCC
Confidence 9987653
No 43
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.09 E-value=0.1 Score=41.57 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=45.3
Q ss_pred EeecCCCEEEEEEEE----EecccEEEEccc----cEEEE----EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEE
Q 032315 47 FRPFKGEILGAGVTM----VNKMGFLAEAGA----VQIFC----LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKII 114 (143)
Q Consensus 47 FrPf~gEVv~G~V~~----v~~~Gi~v~iGp----~~ifI----~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~ 114 (143)
|+...||++.|+|.. +++..+++.+|- .+.++ ++| +..|+.||.||+-|.
T Consensus 3 ~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip------------------~E~~~~GDrIkayV~ 64 (251)
T 2asb_A 3 FSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVP------------------GESYEHGNRLRCYVV 64 (251)
T ss_dssp -CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCT------------------TCCCCTTCEEEEEEE
T ss_pred hhhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCC------------------CccCCCCCEEEEEEE
Confidence 778899999999999 888899999997 67766 222 125799999999999
Q ss_pred EEEEcc
Q 032315 115 GTQVDV 120 (143)
Q Consensus 115 ~v~~~~ 120 (143)
.++-+.
T Consensus 65 ~V~~~~ 70 (251)
T 2asb_A 65 GVTRGA 70 (251)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 998754
No 44
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=93.21 E-value=0.17 Score=40.69 Aligned_cols=66 Identities=9% Similarity=-0.024 Sum_probs=46.0
Q ss_pred ecCCCEEEEEEEEEecccEEEEccccEEEE---EcCCCceecCCC--CceEEcCCc-------eEEEcCCCeEEEEEEEE
Q 032315 49 PFKGEILGAGVTMVNKMGFLAEAGAVQIFC---LIPDDMELQTGD--LPSYTTSDG-------SVKIQKDCELWLKIIGT 116 (143)
Q Consensus 49 Pf~gEVv~G~V~~v~~~Gi~v~iGp~~ifI---~lp~~~~fd~~~--~~~~~~~~~-------~~~i~~g~~VR~RV~~v 116 (143)
...|+++.|+|+++++.|+|+.+|-.++|+ .+|+ .-.++ ...+..+++ .-.+++|+.+..+|.++
T Consensus 4 ~~~G~~v~g~V~~~~~~G~fv~~~g~egllp~se~~~---~vGdevev~v~~d~~~r~iat~~~p~~~~G~~~~g~V~~v 80 (285)
T 3go5_A 4 TNLASFIVGLIIDENDRFYFVQKDGQTYALAKEEGQH---TVGDTVKGFAYTDMKQKLRLTTLEVTATQDQFGWGRVTEV 80 (285)
T ss_dssp TTTTEEEEEEEEEECSSEEEEEETTEEEEEEGGGCCC---CTTSEEEEEEEECTTSCEEEECSCCCSCSSSCEEEEEEEE
T ss_pred ccCCCEEEEEEEEEECCEEEEEcCCeEEEEEHHHCcc---ccCCEEEEEEEECCCCCEEEecccccccCCCEEEEEEEEE
Confidence 357999999999999999999998778998 6664 11111 112221111 13468899999999987
Q ss_pred E
Q 032315 117 Q 117 (143)
Q Consensus 117 ~ 117 (143)
.
T Consensus 81 ~ 81 (285)
T 3go5_A 81 R 81 (285)
T ss_dssp E
T ss_pred c
Confidence 5
No 45
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=92.87 E-value=0.11 Score=42.18 Aligned_cols=62 Identities=13% Similarity=0.110 Sum_probs=46.7
Q ss_pred EeecCCCEEEEEEEEEecccEEEEcc-ccEEEEEcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEE
Q 032315 47 FRPFKGEILGAGVTMVNKMGFLAEAG-AVQIFCLIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQ 117 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~Gi~v~iG-p~~ifI~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~ 117 (143)
+.|..|.+|.|.|++++...+.++++ +.+.++.+. .|.... ++.+..+++||.|++||....
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~---~f~Gat------k~~r~~f~~GDlV~ArV~s~~ 185 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYL---SFEGAT------KRNRPNVQVGDLIYGQFVVAN 185 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESC---SSSCCS------SCSSSSSCTTCEEEEEEEECC
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehh---hcCcch------hhhhhhcCCCCEEEEEEEEcC
Confidence 68999999999999999999999997 466666222 122111 233467899999999999754
No 46
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=86.44 E-value=1.3 Score=38.54 Aligned_cols=73 Identities=11% Similarity=0.041 Sum_probs=47.4
Q ss_pred EeecCCCEEEEEEEEEecc--cEEEEccc-cEEEEEcCCC--ceecCCCCceEEc-CCceEEEcCCCeEEEEEEEEEEcc
Q 032315 47 FRPFKGEILGAGVTMVNKM--GFLAEAGA-VQIFCLIPDD--MELQTGDLPSYTT-SDGSVKIQKDCELWLKIIGTQVDV 120 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~--Gi~v~iGp-~~ifI~lp~~--~~fd~~~~~~~~~-~~~~~~i~~g~~VR~RV~~v~~~~ 120 (143)
=++.+|.+..|+|+++.+. |+||.+|+ -+.|+.+.+- -.+..... ... .+-...++.|++|.++|...-...
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~--~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~ 118 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYS--AHGRPNIKDVLREGQEVIVQIDKEERGN 118 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC---------CCCGGGTCCTTCEEEEEEEECCCTT
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccc--cccccchhhhccCCCEEEEEEEeecccc
Confidence 3467899999999999999 99999999 5699933211 01111000 000 011234789999999999866544
Q ss_pred C
Q 032315 121 T 121 (143)
Q Consensus 121 ~ 121 (143)
.
T Consensus 119 K 119 (517)
T 2bx2_L 119 K 119 (517)
T ss_dssp C
T ss_pred C
Confidence 3
No 47
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=76.84 E-value=8.4 Score=26.51 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=37.9
Q ss_pred EEEEEEecccEEEEc--cc-cEEEE---EcCCCce-ec---------CCCCceEEcCCceEEEcCCCeEEEEEEEE
Q 032315 57 AGVTMVNKMGFLAEA--GA-VQIFC---LIPDDME-LQ---------TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116 (143)
Q Consensus 57 G~V~~v~~~Gi~v~i--Gp-~~ifI---~lp~~~~-fd---------~~~~~~~~~~~~~~~i~~g~~VR~RV~~v 116 (143)
.+|.-..+.|+.+|+ .| +..|- ++-.++. ++ ....-.|..++.+..++.||+|+.++.-.
T Consensus 6 ~~ve~l~P~G~rvsipD~pgi~lf~fh~~iN~~~~~~~~g~~~~dit~~~~GrW~~~d~~~~lk~GD~I~Ywv~V~ 81 (107)
T 3ie4_A 6 AKIDVFYPKGFEVSIPDEEGITLFAFHGKLNEEMEGLEAGTWARDIVKAKNGRWTFRDRITALKPGDTLYYWTYVI 81 (107)
T ss_dssp CEEEECSSSCEEEEEECCTTEEEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEEEEESSCCCCTTCEEEEEEEEE
T ss_pred cEEEEeCCCCEEEEEcCCCCCEEEEEEEEeCCCCcCccccEeEEeEeEecCCEEEEECCCceeCCCCEEEEEEEEE
Confidence 345556679999999 36 56555 3222211 11 11123566667778999999999999765
No 48
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=59.50 E-value=21 Score=24.32 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=34.8
Q ss_pred EEEEEecccEEEEc-cc-cEEEE---EcCCCc------ee--c--CCCCceEEcCCceEEEcCCCeEEEEEEEE
Q 032315 58 GVTMVNKMGFLAEA-GA-VQIFC---LIPDDM------EL--Q--TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116 (143)
Q Consensus 58 ~V~~v~~~Gi~v~i-Gp-~~ifI---~lp~~~------~f--d--~~~~~~~~~~~~~~~i~~g~~VR~RV~~v 116 (143)
.|.-..+.|+.+|+ .| +..|- ++=.++ .| | ....-.|..++.+..++.||+|..++.-.
T Consensus 9 ~ve~l~PkG~~vSip~pGi~lfafh~~iN~~~~~~~~g~~~~dit~~~~GrW~~~d~~~~lk~GD~i~Yw~~V~ 82 (106)
T 3aqy_A 9 KLEAIYPKGLRVSIPDDGFSLFAFHGKLNEEMDGLEAGHWARDITKPKEGRWTFRDRNVKLKLGDKIYFWTYVI 82 (106)
T ss_dssp EEEEESSSCEEEEEECSSCSEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEEEEECSCCCCTTCEEEEEEEEE
T ss_pred EEEEeCCCcEEEEEeCCCcEEEEEEEEecCCCCccccceeeeeeeEecCCEEEEECCceEeCCCCEEEEEEEEE
Confidence 45555679999998 34 44443 221111 11 1 11122466666678999999999999654
No 49
>2kha_A Beta-1,3-glucan-binding protein; glycoprotein, immune response, innate immunity, secreted, sugar binding protein; NMR {Plodia interpunctella}
Probab=56.88 E-value=21 Score=25.34 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=35.9
Q ss_pred EEEEEEecccEEEEcc-c-cEEEE---EcCCCc--------eec--CCCCceEEcCCceEEEcCCCeEEEEEEEE
Q 032315 57 AGVTMVNKMGFLAEAG-A-VQIFC---LIPDDM--------ELQ--TGDLPSYTTSDGSVKIQKDCELWLKIIGT 116 (143)
Q Consensus 57 G~V~~v~~~Gi~v~iG-p-~~ifI---~lp~~~--------~fd--~~~~~~~~~~~~~~~i~~g~~VR~RV~~v 116 (143)
..|.-..+.|+.+|+- | +..|- ++=.++ .-| ....-.|..++.+..++.||+|+.++.-.
T Consensus 17 ~~ve~l~PkGf~VSIpepGi~lFaFh~~iN~~~~~~~~G~~~~dit~~~~GrW~~~d~~~~Lk~GD~IyYw~~V~ 91 (130)
T 2kha_A 17 AKLEAIYPRGLRVSIPDDGFSLFAFHGKLNEEMDGLEAGHWARDITKPKEGRWTFRDRNAKLKLGDKIYFWTYVI 91 (130)
T ss_dssp CEEEEETTTEEEEEEECCSCSEEEEEEEESCCCSSCCCCSEEEEECSCSSSEEEEEETTCCCCTTCEEEEEEEEE
T ss_pred cEEEEeCCCCEEEEEeCCCcEEEEEEEEccCCCcccccceeeeeeeeecCCEEEEECCceeeCCCCEEEEEEEEE
Confidence 4455556799999983 4 33443 331111 011 11123466666678999999999999875
No 50
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=33.39 E-value=27 Score=29.64 Aligned_cols=58 Identities=5% Similarity=-0.016 Sum_probs=36.5
Q ss_pred EeecCCCEEEEEEEEEecccEEEEccccEEEE-EcCCCceecCCCCceEEcCCceEEEcCCCeEEEEEEEEEEccCCeE
Q 032315 47 FRPFKGEILGAGVTMVNKMGFLAEAGAVQIFC-LIPDDMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGTQVDVTEIE 124 (143)
Q Consensus 47 FrPf~gEVv~G~V~~v~~~Gi~v~iGp~~ifI-~lp~~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v~~~~~~~~ 124 (143)
++...||+.+|.|+++...+. .++| .++. | +.. +..++.||.|++||..+......+-
T Consensus 399 l~~~~g~~f~g~vv~l~~~~g-------lV~v~~l~~----d------~~~---~~~~~lGd~V~V~v~~vd~~~~~i~ 457 (469)
T 2r7d_A 399 IAAQPERVWDAVVVDRRGAQA-------TLLIPDLAF----D------VQV---NTPAAPGTALQVQFADIDLPQMRVR 457 (469)
T ss_dssp HHTCTTCCEEEEEEEEETTEE-------EEEEGGGTE----E------EEE---ECCCCTTCEEEEEEEEEETTTTEEE
T ss_pred HHhCCCCEEEEEEEEEeCcEE-------EEEECCCCe----E------Eec---CCcCCCCCEEEEEEEEEccCCCEEE
Confidence 345678888998876542211 2333 3331 2 111 2468999999999999998776653
No 51
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=32.84 E-value=31 Score=26.32 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=25.1
Q ss_pred CceEEc--C------CceEEEcCCCeEEEEEEEEEEccCCeEEEEEcccc
Q 032315 91 LPSYTT--S------DGSVKIQKDCELWLKIIGTQVDVTEIEKARREVGK 132 (143)
Q Consensus 91 ~~~~~~--~------~~~~~i~~g~~VR~RV~~v~~~~~~~~ai~~~~~~ 132 (143)
+|.|.+ . ++.+.+-.|..|||+|.+. +.--=|+|-.+.+|
T Consensus 25 QW~W~f~Ypd~~i~~~n~l~lP~g~~V~~~lTS~--DViHSF~IP~lgvK 72 (205)
T 1cyx_A 25 DWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSN--SVMHSFFIPRLGSQ 72 (205)
T ss_dssp TTEEEEEETTTTEEEESEEEEETTSCEEEEEEES--SSCEEEEEGGGTEE
T ss_pred EeEEEEEeCCCCccccceEEEeCCCEEEEEEecC--CceeeEEecccCcE
Confidence 677653 2 2468999999999999873 22223444444443
No 52
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=30.86 E-value=45 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=18.3
Q ss_pred CceEEcCCceEEEcCCCeEEEEEEE
Q 032315 91 LPSYTTSDGSVKIQKDCELWLKIIG 115 (143)
Q Consensus 91 ~~~~~~~~~~~~i~~g~~VR~RV~~ 115 (143)
+|.|.. +.+.+..|+.||+++.+
T Consensus 54 ~~~f~P--~~l~Vp~G~~V~~~vts 76 (135)
T 2cua_A 54 AFGYQP--NPIEVPQGAEIVFKITS 76 (135)
T ss_dssp TTEEES--SSEEEETTSEEEEEEEB
T ss_pred eCEEEC--CEEEEcCCCEEEEEEEe
Confidence 566754 35899999999999876
No 53
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=29.48 E-value=76 Score=20.80 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=37.5
Q ss_pred ecCCCEEEEEEEEEecccEEEEccc-cEEEEEcCCCceecCCCCceEEc--CC-ceEEEcCCCeEEEE
Q 032315 49 PFKGEILGAGVTMVNKMGFLAEAGA-VQIFCLIPDDMELQTGDLPSYTT--SD-GSVKIQKDCELWLK 112 (143)
Q Consensus 49 Pf~gEVv~G~V~~v~~~Gi~v~iGp-~~ifI~lp~~~~fd~~~~~~~~~--~~-~~~~i~~g~~VR~R 112 (143)
|-.++..-|.|+++++.++.+.+.. ..+.|.. +++.+-.. +.+ +. -...++.||.||+|
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~-~~~~WA~~----~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITG-DGLKAAHR----FLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECG-GGGSTTGG----GTTTCTTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcH-HHChhhhh----cccccccchhccCCCCCEEEEE
Confidence 4558889999999999999998854 5565511 11111100 000 11 23568999999998
No 54
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=29.21 E-value=44 Score=25.58 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=29.0
Q ss_pred EEEEeecceecceeEEcCCccEEEEEEEEE---EEEee-cCCCEEEEE
Q 032315 15 AVAITGAESIGKGLIRNGTVLVTFLVRCQC---IVFRP-FKGEILGAG 58 (143)
Q Consensus 15 iI~i~dI~~i~eG~I~~gdG~~~~~V~F~~---lvFrP-f~gEVv~G~ 58 (143)
++.|.++ ++.++++....+..++.|+|++ -+.|= -.|||++|-
T Consensus 134 il~I~~v-dI~~a~~~~~~~~p~itV~f~aq~i~~~rd~k~GeVVeGd 180 (222)
T 3qk9_A 134 ILDIRGV-EIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGD 180 (222)
T ss_dssp EEEEEEE-EEEEEEECSSSCCEEEEEEEEEEEECCEEESTTCCCSSSC
T ss_pred Eeeecce-EEEEEEEecCCCceEEEEEEEEEEEEEEEeCCCCccccCC
Confidence 3444444 4778888754568889999876 24444 688888773
No 55
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=25.21 E-value=1.3e+02 Score=18.95 Aligned_cols=54 Identities=7% Similarity=0.080 Sum_probs=31.8
Q ss_pred EEEEEEEEeccc--EEEEccccEEEEEcCC-CceecCCCCceEEcCCceEEEcCCCeEEEEEEE
Q 032315 55 LGAGVTMVNKMG--FLAEAGAVQIFCLIPD-DMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115 (143)
Q Consensus 55 v~G~V~~v~~~G--i~v~iGp~~ifI~lp~-~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~ 115 (143)
..|+|.+++... +.++=||..-+ .+|. .+.|.-..... -.-++.||.|||.+..
T Consensus 10 ~~G~V~~id~~~~~iTi~H~pI~~l-~wpaMTM~F~v~~~~~------l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 10 ATGVVKGIDLESKKITIHHDPIAAV-NWPEMTMRFTITPQTK------MSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp EEEEEEEEETTTTEEEEEECCBGGG-TBCSEEEEEECCTTCE------ECCCCTTCEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCcccC-CCCceEEEEEccChhh------hhcCCCCCEEEEEEEE
Confidence 689999999776 66665773310 1121 13343221111 1348999999999964
No 56
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=25.17 E-value=56 Score=20.97 Aligned_cols=18 Identities=0% Similarity=0.089 Sum_probs=14.7
Q ss_pred eEEEcCCCeEEEEEEEEE
Q 032315 100 SVKIQKDCELWLKIIGTQ 117 (143)
Q Consensus 100 ~~~i~~g~~VR~RV~~v~ 117 (143)
+-.+++|++|+||+....
T Consensus 10 r~iYrPGetV~~~~~~~~ 27 (102)
T 2p9r_A 10 KSIYKPGQTVKFRVVSMD 27 (102)
T ss_dssp CSEECTTCEEEEEEEEEC
T ss_pred CcccCCCCEEEEEEEEEC
Confidence 356799999999998764
No 57
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=24.34 E-value=1.1e+02 Score=19.54 Aligned_cols=55 Identities=5% Similarity=-0.042 Sum_probs=32.8
Q ss_pred EEEEEEEEecccEEEEccccEEEEEcCC-CceecCCCCceEEcCCceEEEcCCCeEEEEEEEE
Q 032315 55 LGAGVTMVNKMGFLAEAGAVQIFCLIPD-DMELQTGDLPSYTTSDGSVKIQKDCELWLKIIGT 116 (143)
Q Consensus 55 v~G~V~~v~~~Gi~v~iGp~~ifI~lp~-~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~v 116 (143)
..|+|.+++...+.++=||..-+ .+|. -+.|.-.... .-.-++.|+.|+|.+...
T Consensus 6 ~~G~V~~vd~~~iTi~H~pI~~l-~wPaMTM~F~v~~~~------~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 6 AVGRIQSIGERSLIIAHEAIPSA-QWGAMTMEFAAPPAG------LPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp EEEEEEECCSSEEEEEECCCTTT-TCCCEEEEEECCTTC------CCSSCSTTCEEEEEEEEE
T ss_pred EeEEEEEEccccEEEecCCcccc-CCCceEEEEEcCChh------HhhcCCCCCEEEEEEEEC
Confidence 47999999988877766773321 1221 1334322110 013479999999999653
No 58
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=22.96 E-value=77 Score=20.50 Aligned_cols=16 Identities=6% Similarity=0.117 Sum_probs=10.4
Q ss_pred eEEEcCCCeEEEEEEE
Q 032315 100 SVKIQKDCELWLKIIG 115 (143)
Q Consensus 100 ~~~i~~g~~VR~RV~~ 115 (143)
...++.|+.||+++..
T Consensus 39 ~i~v~~G~~V~~~~~n 54 (112)
T 1iby_A 39 TLVVKKGDAVKVVVEN 54 (112)
T ss_dssp EEEEETTCEEEEEEEE
T ss_pred EEEEeCCCEEEEEEEE
Confidence 4666777777776654
No 59
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=20.96 E-value=1.8e+02 Score=18.75 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=31.8
Q ss_pred EEEEEEEEeccc--EEEEccccEEEEEcCC-CceecCCCCceEEcCCceEEEcCCCeEEEEEEE
Q 032315 55 LGAGVTMVNKMG--FLAEAGAVQIFCLIPD-DMELQTGDLPSYTTSDGSVKIQKDCELWLKIIG 115 (143)
Q Consensus 55 v~G~V~~v~~~G--i~v~iGp~~ifI~lp~-~~~fd~~~~~~~~~~~~~~~i~~g~~VR~RV~~ 115 (143)
..|+|++++... +.++=||..-+ .+|. .+.|.-... .. -.-++.|+.|||.+..
T Consensus 18 ~~G~V~~id~~~~~iTi~H~pI~~l-~wpaMTM~F~v~~~-~~-----l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 18 ATGVVKGIDLESKKITIHHDPIAAV-NWPEMTMRFTITPQ-TK-----MSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp EEEEEEEEETTTTEEEEEECCBGGG-TBCSEEEEEECCTT-CE-----ECCCCTTCEEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEecCCcccC-CCCceEEEEEcCCh-hh-----hhcCCCCCEEEEEEEE
Confidence 789999999776 66665773310 1121 133432211 11 1348999999999964
No 60
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=20.25 E-value=44 Score=23.84 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=14.9
Q ss_pred EEEcCCCeEEEEEEEEEE
Q 032315 101 VKIQKDCELWLKIIGTQV 118 (143)
Q Consensus 101 ~~i~~g~~VR~RV~~v~~ 118 (143)
..++.|++|||.+...+|
T Consensus 73 InV~~GETVrF~v~nkt~ 90 (131)
T 2wtp_A 73 VNVDSGETVAFRAGEKIV 90 (131)
T ss_dssp EEEETTCEEEEEETTEEE
T ss_pred EEecCCCEEEEEeCCcEE
Confidence 668999999999976654
Done!