BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032316
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q41228|PSAEA_NICSY Photosystem I reaction center subunit IV A, chloroplastic
OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1
Length = 141
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 103/144 (71%), Positives = 113/144 (78%), Gaps = 4/144 (2%)
Query: 1 MASCNMASAASGFSL-TPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAAPPA 59
MASCNMASAAS F + TPNVA+N N+ S++ MLFF KN S + RLVVRA+EEAA P A
Sbjct: 1 MASCNMASAASNFLVATPNVASNTNT-SRTTMLFFSSKNYGSTAPRLVVRAAEEAAPPAA 59
Query: 60 AATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVV 119
AAT A KP PPIGPKRG KV+ILR+ESYWY G GSVVA DQDP +RYPVVV
Sbjct: 60 AATAEPAEAPVKAAKP--PPIGPKRGTKVRILRKESYWYKGTGSVVACDQDPNTRYPVVV 117
Query: 120 RFNKVNYANVSTNNYALDEIEEVK 143
RFNKVNYANVSTNNYALDEIEEVK
Sbjct: 118 RFNKVNYANVSTNNYALDEIEEVK 141
>sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum
vulgare GN=PSAE PE=1 SV=2
Length = 147
Score = 146 bits (368), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/154 (57%), Positives = 96/154 (62%), Gaps = 21/154 (13%)
Query: 1 MASCNMASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEEAAA---- 56
MAS NMASA S F L + + N G S + F P ++ +LV RA E AA
Sbjct: 1 MASTNMASATSRFMLAAGIPSGANGGVSSRVSFLP---SNRLGLKLVARAEEPTAAAPAE 57
Query: 57 --------PPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVD 108
P AA T PA K KPPP GPKRG KVKILRRESYWYNG GSVV VD
Sbjct: 58 PAPAADEKPEAAVATKEPA------KAKPPPRGPKRGTKVKILRRESYWYNGTGSVVTVD 111
Query: 109 QDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
QDP +RYPVVVRF KVNYA VSTNNYALDEI+EV
Sbjct: 112 QDPNTRYPVVVRFAKVNYAGVSTNNYALDEIKEV 145
>sp|Q9S714|PSAE2_ARATH Photosystem I reaction center subunit IV B, chloroplastic
OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1
Length = 145
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/146 (60%), Positives = 105/146 (71%), Gaps = 11/146 (7%)
Query: 6 MASAASGFSLTPNVATNVNSGS-KSNML--FFPPKNNSSNSFRLVVRASEEA-----AAP 57
M SAA+GF LT NV + GS KS + F P ++ S RLVVRA+E+ ++
Sbjct: 3 MTSAATGFILTANVPAAIGGGSSKSTTIVSFLPMRSFGS---RLVVRAAEDTPPATASSD 59
Query: 58 PAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPV 117
++ T AA A K KPPPIGPKRG+KVKILR+ESYWY +GSVVAVDQDPK+RYPV
Sbjct: 60 SSSTTAAAAPAKVPAAKAKPPPIGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPV 119
Query: 118 VVRFNKVNYANVSTNNYALDEIEEVK 143
VVRF KVNYAN+STNNYALDE+EEVK
Sbjct: 120 VVRFAKVNYANISTNNYALDEVEEVK 145
>sp|Q41229|PSAEB_NICSY Photosystem I reaction center subunit IV B, chloroplastic
OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1
Length = 143
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/135 (66%), Positives = 107/135 (79%), Gaps = 6/135 (4%)
Query: 12 GFSL-TPNVATNVNSGSKSNMLFFPP-KNNSSNSF-RLVVRASEEAAAPPAAATTAAPAE 68
GF + TPN+AT+ N+ +++MLFF KNN++ +F RLVVRA+EEAA P A AT A
Sbjct: 12 GFMVATPNIATS-NTAPRTSMLFFSSSKNNTTTNFPRLVVRAAEEAAPPAATATAEGEAP 70
Query: 69 GEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYAN 128
A KP P IGPKRG KV++LR+ESYWY G+GSVVAVDQDP +RYPVVVRFNKVNYAN
Sbjct: 71 PAKAAKPPP--IGPKRGTKVRVLRKESYWYKGVGSVVAVDQDPNTRYPVVVRFNKVNYAN 128
Query: 129 VSTNNYALDEIEEVK 143
VSTNNYALDE+EEVK
Sbjct: 129 VSTNNYALDEVEEVK 143
>sp|P12354|PSAE_SPIOL Photosystem I reaction center subunit IV, chloroplastic OS=Spinacia
oleracea GN=PSAE-1 PE=1 SV=1
Length = 125
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 89/111 (80%), Gaps = 6/111 (5%)
Query: 34 FPPKNNSS-NSFRLVVRASEEAAAPPAAATTAAPAEGEAAPKPKPPP-IGPKRGAKVKIL 91
P KN SS S RLVVRA+EEAAA A AA EGEA PP IGPKRG+KV+I+
Sbjct: 18 LPNKNFSSPRSTRLVVRAAEEAAA----APAAASPEGEAPKAAAKPPPIGPKRGSKVRIM 73
Query: 92 RRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
R+ESYWY G+GSVVAVDQDPK+RYPVVVRFNKVNYANVSTNNYALDEI+EV
Sbjct: 74 RKESYWYKGVGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEIQEV 124
>sp|Q9S831|PSAE1_ARATH Photosystem I reaction center subunit IV A, chloroplastic
OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1
Length = 143
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/141 (57%), Positives = 103/141 (73%), Gaps = 6/141 (4%)
Query: 6 MASAASGFSLTPNVATNVNSGSKSNMLFFPPKNNSSNSFRLVVRASEE----AAAPPAAA 61
M +A++ F L NV + + S + + F P N+ + RLVVRA+E+ +++ +
Sbjct: 3 MTTASTVFVLPANVTSVAGASSSRSSVSFLPMRNAGS--RLVVRAAEDPAPASSSSKDSP 60
Query: 62 TTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRF 121
AA +G A KPKPPPIGPKRG+KVKILRRESYW+ +GSVVAVDQDPK+RYPVVVRF
Sbjct: 61 AAAAAPDGATATKPKPPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRF 120
Query: 122 NKVNYANVSTNNYALDEIEEV 142
KVNYAN+STNNYALDE+EEV
Sbjct: 121 AKVNYANISTNNYALDEVEEV 141
>sp|P12352|PSAE_CHLRE Photosystem I reaction center subunit IV, chloroplastic
OS=Chlamydomonas reinhardtii GN=PSAE PE=1 SV=1
Length = 97
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 58/95 (61%), Gaps = 20/95 (21%)
Query: 45 RLVVRASEEAAAPPAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKILRRESYWYNGIGSV 104
RLVVRA E AAP +GPKRG+ VKILR ESYW+N +G V
Sbjct: 19 RLVVRAEEVKAAPK-------------------KEVGPKRGSLVKILRPESYWFNQVGKV 59
Query: 105 VAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEI 139
V+VDQ RYPVVVRF NYA V+TNNYALDE+
Sbjct: 60 VSVDQSG-VRYPVVVRFENQNYAGVTTNNYALDEV 93
>sp|Q7NFW6|PSAE_GLOVI Photosystem I reaction center subunit IV OS=Gloeobacter violaceus
(strain PCC 7421) GN=psaE PE=1 SV=1
Length = 65
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 50/61 (81%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
+RGAKV+ILR+ESYWY +G+V +VD+ K+ YPV VRF KVNY+ ++TNN+ + E+EEV
Sbjct: 4 ERGAKVRILRKESYWYREVGTVASVDKSEKTIYPVTVRFEKVNYSGINTNNFGVSELEEV 63
Query: 143 K 143
+
Sbjct: 64 E 64
>sp|P0A423|PSAE_THEEB Photosystem I reaction center subunit IV OS=Thermosynechococcus
elongatus (strain BP-1) GN=psaE PE=1 SV=2
Length = 76
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 7/67 (10%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYA 135
+RG+KVKILR ESYWYN +G+V +VDQ P +YPV+VRF+KVNY + V+TNN+A
Sbjct: 3 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFA 62
Query: 136 LDEIEEV 142
L E++EV
Sbjct: 63 LHEVQEV 69
>sp|P0A424|PSAE_SYNEL Photosystem I reaction center subunit IV OS=Synechococcus elongatus
GN=psaE PE=1 SV=2
Length = 76
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 7/67 (10%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYA 135
+RG+KVKILR ESYWYN +G+V +VDQ P +YPV+VRF+KVNY + V+TNN+A
Sbjct: 3 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDKVNYTGYSGSASGVNTNNFA 62
Query: 136 LDEIEEV 142
L E++EV
Sbjct: 63 LHEVQEV 69
>sp|O78515|PSAE_GUITH Photosystem I reaction center subunit IV OS=Guillardia theta
GN=psaE PE=3 SV=1
Length = 64
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
KRG+KV+ILR+ESYWY +G+V VD RYPVVVRF KV+Y+ V+TNN++LDE+ EV
Sbjct: 3 KRGSKVRILRKESYWYQEVGTVATVDTSG-IRYPVVVRFEKVSYSGVNTNNFSLDEVIEV 61
>sp|P58575|PSAE_NOSS1 Photosystem I reaction center subunit IV OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=psaE PE=3 SV=1
Length = 70
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
+RG+KV+ILR ESYW+ +G+V +VDQ +YPV+VRF+KVNYA ++TNN+A+DE+ EV
Sbjct: 3 QRGSKVRILRPESYWFQDVGTVASVDQSG-IKYPVIVRFDKVNYAGINTNNFAVDELIEV 61
Query: 143 K 143
+
Sbjct: 62 E 62
>sp|Q9ZFU3|PSAE_MASLA Photosystem I reaction center subunit IV OS=Mastigocladus laminosus
GN=psaE PE=3 SV=1
Length = 71
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 49/61 (80%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
+RG+KV+ILR ESYW+ IG+V +++Q RYPV+VRF+KVNYA V+TNN+A E+ EV
Sbjct: 3 QRGSKVRILRPESYWFQDIGTVASIEQGGTIRYPVIVRFDKVNYAGVNTNNFAEYELVEV 62
Query: 143 K 143
+
Sbjct: 63 E 63
>sp|P31090|PSAE_ANAVT Photosystem I reaction center subunit IV OS=Anabaena variabilis
(strain ATCC 29413 / PCC 7937) GN=psaE PE=1 SV=3
Length = 71
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
+RG+KV+ILR ESYW+ +G+V +VDQ +YPV+VRF+KVNY+ ++TNN+A+DE+ EV
Sbjct: 3 QRGSKVRILRPESYWFQDVGTVASVDQSG-IKYPVIVRFDKVNYSGINTNNFAVDELIEV 61
Query: 143 K 143
+
Sbjct: 62 E 62
>sp|O19924|PSAE_CYACA Photosystem I reaction center subunit IV OS=Cyanidium caldarium
GN=psaE PE=3 SV=1
Length = 69
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 51/61 (83%), Gaps = 1/61 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
K+G++V+ILR ESYW+N IG+V VDQ RYPV+VRF+KVNY+ ++TNN+A++E+ E+
Sbjct: 3 KKGSQVRILRPESYWHNEIGTVATVDQSG-IRYPVIVRFDKVNYSGINTNNFAVNELVEI 61
Query: 143 K 143
+
Sbjct: 62 Q 62
>sp|P49482|PSAE_ODOSI Photosystem I reaction center subunit IV OS=Odontella sinensis
GN=psaE PE=3 SV=1
Length = 71
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
RG+KV+ILR+ESYW+N +G++ +DQ RYP VVRF VNY+ +TNN+AL+E+ EV
Sbjct: 4 RGSKVRILRKESYWFNQVGTIATIDQSG-IRYPAVVRFENVNYSGTNTNNFALEELIEV 61
>sp|Q117D3|PSAE_TRIEI Photosystem I reaction center subunit IV OS=Trichodesmium
erythraeum (strain IMS101) GN=psaE PE=3 SV=1
Length = 69
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 51/67 (76%), Gaps = 8/67 (11%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYA-------NVSTNNYA 135
KRG+KV+ILR+ESYWY +G+V +VD+ +YPV+VRF+KVNYA V+TNN+A
Sbjct: 3 KRGSKVRILRKESYWYQDVGTVASVDK-SGIKYPVIVRFDKVNYAGSSGSPTGVNTNNFA 61
Query: 136 LDEIEEV 142
+DE+ E+
Sbjct: 62 IDEVVEI 68
>sp|B2J5G1|PSAE_NOSP7 Photosystem I reaction center subunit IV OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=psaE PE=3 SV=1
Length = 71
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
+RG+KV+ILR ESYW+ +G+V ++DQ +YPV+VRF KVNY+ ++TNN+A DE+ EV
Sbjct: 3 QRGSKVRILRPESYWFQDLGTVASIDQSG-IKYPVIVRFEKVNYSGINTNNFAQDELVEV 61
Query: 143 K 143
+
Sbjct: 62 E 62
>sp|Q9WWP1|PSAE_NOSS8 Photosystem I reaction center subunit IV OS=Nostoc sp. (strain PCC
8009) GN=psaE PE=1 SV=1
Length = 70
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
+RG+KV+ILR ESYW+ +G+V +VDQ +YPV+VRF KVNY+ ++TNN+A DE+ EV
Sbjct: 3 QRGSKVRILRPESYWFQDVGTVASVDQSG-IKYPVIVRFEKVNYSGINTNNFAEDELVEV 61
Query: 143 K 143
+
Sbjct: 62 E 62
>sp|A0T0F3|PSAE_PHATC Photosystem I reaction center subunit IV OS=Phaeodactylum
tricornutum (strain CCAP 1055/1) GN=psaE PE=3 SV=1
Length = 69
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%), Gaps = 1/59 (1%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
RG++V+ILR ESYW+N +G+V VDQ RYP VVRF KVNY+ +TNN+AL E+ EV
Sbjct: 4 RGSEVRILREESYWFNEVGTVATVDQSG-IRYPAVVRFEKVNYSGTNTNNFALSELVEV 61
>sp|P23809|PSAE_FREDI Photosystem I reaction center subunit IV OS=Fremyella diplosiphon
GN=psaE PE=1 SV=1
Length = 66
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
+RG+KV+ILR ESYW+ +G+V ++DQ +Y V+VRF+KVNY+ ++TNN+A DE+ EV
Sbjct: 2 QRGSKVRILRPESYWFQDVGTVASIDQ-SGIKYSVIVRFDKVNYSGINTNNFAEDELLEV 60
>sp|Q1XDG0|PSAE_PORYE Photosystem I reaction center subunit IV OS=Porphyra yezoensis
GN=psaE PE=3 SV=1
Length = 62
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEI 139
+RG+KVKILR+ESYWY IG+V A+D+ +YPV+VRF KVNY NV+TN++A E+
Sbjct: 2 ERGSKVKILRKESYWYQEIGTVAAIDKSG-IKYPVLVRFEKVNYNNVNTNSFADTEL 57
>sp|P69404|PSAE_PORUM Photosystem I reaction center subunit IV OS=Porphyra umbilicalis
GN=psaE PE=3 SV=1
Length = 62
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEI 139
+RG+KVKILR+ESYWY IG+V A+D+ +YPV+VRF KVNY NV+TN++A +E+
Sbjct: 2 ERGSKVKILRKESYWYQEIGTVAAMDKSG-IKYPVLVRFEKVNYNNVNTNSFADNEL 57
>sp|P69403|PSAE_PORPU Photosystem I reaction center subunit IV OS=Porphyra purpurea
GN=psaE PE=3 SV=1
Length = 62
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEI 139
+RG+KVKILR+ESYWY IG+V A+D+ +YPV+VRF KVNY NV+TN++A +E+
Sbjct: 2 ERGSKVKILRKESYWYQEIGTVAAMDKSG-IKYPVLVRFEKVNYNNVNTNSFADNEL 57
>sp|P31969|PSAE_SYNP2 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=psaE PE=1 SV=2
Length = 70
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%), Gaps = 8/67 (11%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYA 135
+RG+KVKILR+ESYWY +G+V ++D+ YPV+VRFNKVNY ++TNN+A
Sbjct: 4 ERGSKVKILRKESYWYGDVGTVASIDKSGII-YPVIVRFNKVNYNGFSGSAGGLNTNNFA 62
Query: 136 LDEIEEV 142
E+E V
Sbjct: 63 EHELEVV 69
>sp|P23077|PSAE_SYNP6 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaE
PE=1 SV=3
Length = 75
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 8/66 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYAL 136
RG KV+ILR ESYW+N +G+V +VDQ +YPVVVRF KVNY V+TNN+A
Sbjct: 5 RGDKVRILRPESYWFNEVGTVASVDQ-SGIKYPVVVRFEKVNYNGFSGSDGGVNTNNFAE 63
Query: 137 DEIEEV 142
E++ V
Sbjct: 64 AELQVV 69
>sp|Q31NL7|PSAE_SYNE7 Photosystem I reaction center subunit IV OS=Synechococcus elongatus
(strain PCC 7942) GN=psaE PE=3 SV=1
Length = 75
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 8/66 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYAL 136
RG KV+ILR ESYW+N +G+V +VDQ +YPVVVRF KVNY V+TNN+A
Sbjct: 5 RGDKVRILRPESYWFNEVGTVASVDQ-SGIKYPVVVRFEKVNYNGFSGSDGGVNTNNFAE 63
Query: 137 DEIEEV 142
E++ V
Sbjct: 64 AELQVV 69
>sp|P48114|PSAE_CYAPA Photosystem I reaction center subunit IV OS=Cyanophora paradoxa
GN=psaE PE=3 SV=1
Length = 70
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 52/61 (85%), Gaps = 1/61 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
+RG+KV+ILR+ESYWY IG+V ++DQ +YPV+VRF KVNY+NV++NN++LDE+ EV
Sbjct: 3 QRGSKVRILRKESYWYQEIGTVASIDQSG-IKYPVIVRFEKVNYSNVNSNNFSLDEVVEV 61
Query: 143 K 143
+
Sbjct: 62 E 62
>sp|Q3AWF7|PSAE_SYNS9 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain CC9902) GN=psaE PE=3 SV=1
Length = 69
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 8/64 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYA-------NVSTNNYAL 136
RGAKV+I R ESYW+N +G+V +D RYPVVVRF KVNY+ ++TNN+A
Sbjct: 5 RGAKVRIKRPESYWFNEVGTVATIDTSG-IRYPVVVRFEKVNYSGMQGVDGGINTNNFAE 63
Query: 137 DEIE 140
E+E
Sbjct: 64 SELE 67
>sp|B7K1T0|PSAE_CYAP8 Photosystem I reaction center subunit IV OS=Cyanothece sp. (strain
PCC 8801) GN=psaE PE=3 SV=1
Length = 69
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%), Gaps = 8/67 (11%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYA 135
KRG KV+I R+ESYWY +G+V +VD+ YPV+VRFN VNY ++TNN+A
Sbjct: 3 KRGDKVRIKRKESYWYGDVGTVASVDK-AGILYPVIVRFNTVNYNGLSGSAGGINTNNFA 61
Query: 136 LDEIEEV 142
E+E +
Sbjct: 62 ESELEVI 68
>sp|Q0ICP0|PSAE_SYNS3 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain CC9311) GN=psaE PE=3 SV=1
Length = 69
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 8/64 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG KV+I R ESYWYN +G+V ++D RYPVVVRF KVNY +S TNN+A
Sbjct: 5 RGDKVRIKRPESYWYNDVGTVASIDT-SGIRYPVVVRFEKVNYNGISGSEGGINTNNFAQ 63
Query: 137 DEIE 140
E+E
Sbjct: 64 AELE 67
>sp|Q3AMB5|PSAE_SYNSC Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain CC9605) GN=psaE PE=3 SV=1
Length = 69
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 8/64 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYA-------NVSTNNYAL 136
RGAKV+I R ESYW+N +G+V ++D RYPVVVRF KVNY+ ++TNN+A
Sbjct: 5 RGAKVRIKRPESYWFNEVGTVASIDTS-GIRYPVVVRFEKVNYSGLQGVDGGINTNNFAE 63
Query: 137 DEIE 140
E+E
Sbjct: 64 AELE 67
>sp|Q7U4V3|PSAE_SYNPX Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain WH8102) GN=psaE PE=3 SV=1
Length = 69
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%), Gaps = 8/64 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYAL 136
RGAKV+I R ESYW+N +G+V ++D RYPVVVRF KVNY V+TNN++
Sbjct: 5 RGAKVRIKRPESYWFNEVGTVASIDT-SGIRYPVVVRFEKVNYTGIDGTDGGVNTNNFSE 63
Query: 137 DEIE 140
E+E
Sbjct: 64 AELE 67
>sp|A9BDY6|PSAE_PROM4 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9211) GN=psaE PE=3 SV=1
Length = 69
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 8/66 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG KV++ R ESYWYN +G V +VD +YPVVVRF KVNYA S TNN+A
Sbjct: 5 RGDKVRVKRPESYWYNEVGKVASVDT-SGIKYPVVVRFEKVNYAAYSGVDGGNNTNNFAE 63
Query: 137 DEIEEV 142
+E+E V
Sbjct: 64 NELEAV 69
>sp|P12975|PSAE_SYNY3 Photosystem I reaction center subunit IV OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=psaE PE=1 SV=4
Length = 74
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 8/67 (11%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYAL 136
RG KV+I R ESYWY +G+V +V++ YPV+VRF++VNY + V+TNN+A
Sbjct: 5 RGDKVRIKRTESYWYGDVGTVASVEK-SGILYPVIVRFDRVNYNGFSGSASGVNTNNFAE 63
Query: 137 DEIEEVK 143
+E+E V+
Sbjct: 64 NELELVQ 70
>sp|Q7VDK5|PSAE_PROMA Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain SARG / CCMP1375 / SS120) GN=psaE PE=3 SV=1
Length = 69
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG KV++ R ESYWYN IG V +VD +YPVVVRF KVNY+ S TNN+A
Sbjct: 5 RGDKVRVKRPESYWYNEIGKVASVDT-SGIKYPVVVRFEKVNYSAFSGVDGGNNTNNFAE 63
Query: 137 DEIEEV 142
E+E V
Sbjct: 64 AELEAV 69
>sp|A5GR45|PSAE_SYNR3 Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain RCC307) GN=psaE PE=3 SV=1
Length = 69
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 8/64 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNY-------ANVSTNNYAL 136
RG KV+I R ESYW+N +G+V ++D RYPVVVRF KVNY ++TNN+A
Sbjct: 5 RGDKVRIRRPESYWFNEVGTVASIDT-SGIRYPVVVRFEKVNYNGFSGVDGGINTNNFAE 63
Query: 137 DEIE 140
E++
Sbjct: 64 AELD 67
>sp|A5GJ51|PSAE_SYNPW Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain WH7803) GN=psaE PE=3 SV=1
Length = 69
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 8/64 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG V+I R ESYWYN +G V ++D RYPVVVRF +VNY +S TNN+A
Sbjct: 5 RGDMVRIKRPESYWYNEVGKVASIDT-SGIRYPVVVRFEQVNYNGISGSEGGINTNNFAE 63
Query: 137 DEIE 140
E+E
Sbjct: 64 SELE 67
>sp|Q2JXQ1|PSAE_SYNJA Photosystem I reaction center subunit IV OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psaE PE=3 SV=1
Length = 73
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 83 KRGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEEV 142
+RGAKV++LR+ESYWY +G+V AVD YPV+VRF+K+NY N++TNN+ DE+E V
Sbjct: 4 QRGAKVRVLRKESYWYRDVGTVAAVDTSG-ILYPVIVRFDKINYYNINTNNFREDELEVV 62
Query: 143 K 143
+
Sbjct: 63 E 63
>sp|A2BPD2|PSAE_PROMS Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain AS9601) GN=psaE PE=3 SV=1
Length = 69
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 8/65 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG V++ R ESYWYN IG V +VD +Y VVRF+KVNYA +S TNN+A
Sbjct: 5 RGDLVRVKRPESYWYNEIGKVASVDT-SGIKYNCVVRFDKVNYAGISGTDGGANTNNFAE 63
Query: 137 DEIEE 141
E+E+
Sbjct: 64 SELEK 68
>sp|A3PB54|PSAE_PROM0 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9301) GN=psaE PE=3 SV=1
Length = 69
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 8/65 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG V++ R ESYWYN IG V +VD +Y VVRF+KVNYA +S TNN+A
Sbjct: 5 RGDLVRVKRPESYWYNEIGKVASVDT-SGIKYNCVVRFDKVNYAGISGTDGGANTNNFAE 63
Query: 137 DEIEE 141
E+E+
Sbjct: 64 SELEK 68
>sp|Q31CJ9|PSAE_PROM9 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9312) GN=psaE PE=3 SV=1
Length = 69
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 8/65 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG V++ R ESYWYN IG V +VD +Y VVRF+KVNYA +S TNN+A
Sbjct: 5 RGDLVRVKRPESYWYNEIGKVASVDT-SGIKYNCVVRFDKVNYAGISGTEGGANTNNFAE 63
Query: 137 DEIEE 141
E+E+
Sbjct: 64 SELEK 68
>sp|Q7V2X3|PSAE_PROMP Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
subsp. pastoris (strain CCMP1986 / MED4) GN=psaE PE=3
SV=1
Length = 69
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG V++ R ESYWYN IG V +VD +Y VVRF KVNYA +S TNN+A
Sbjct: 5 RGDLVRVKRPESYWYNEIGKVASVDT-TGIKYNCVVRFEKVNYAGISGTEGGANTNNFAE 63
Query: 137 DEIEE 141
E+E+
Sbjct: 64 SELEK 68
>sp|A8G2Z0|PSAE_PROM2 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9215) GN=psaE PE=3 SV=1
Length = 69
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 8/65 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG V+I R ESYWYN IG V ++D+ +Y VRF+K NYA +S TN +A
Sbjct: 5 RGDFVRIKRPESYWYNEIGKVASIDK-TGIKYNCTVRFDKCNYAGISGTAEGATTNMFAE 63
Query: 137 DEIEE 141
E+E+
Sbjct: 64 SELEK 68
>sp|A2BUV9|PSAE_PROM5 Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9515) GN=psaE PE=3 SV=1
Length = 69
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
RG V+I R+ESYWYN G V ++D+ +Y V V+F++VN+ +S TNN+A
Sbjct: 5 RGDFVRIKRKESYWYNDTGKVASIDK-SGIKYNVTVKFDRVNFYGISGTDGGNVTNNFAE 63
Query: 137 DEIEEV 142
E+E++
Sbjct: 64 VELEKI 69
>sp|Q7V8Y4|PSAE_PROMM Photosystem I reaction center subunit IV OS=Prochlorococcus marinus
(strain MIT 9313) GN=psaE PE=3 SV=1
Length = 68
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 9/64 (14%)
Query: 84 RGAKVKILRRESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVS-------TNNYAL 136
+G KV+I R ESYW+N +G+V +VD K Y V+VRF K NY + TN++A
Sbjct: 5 KGDKVRIRREESYWHNEVGTVASVDTTGK--YGVLVRFEKTNYFGMQGTDNGNLTNSFAE 62
Query: 137 DEIE 140
E++
Sbjct: 63 SELD 66
>sp|Q91VM4|SPNS2_MOUSE Protein spinster homolog 2 OS=Mus musculus GN=Spns2 PE=2 SV=2
Length = 549
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 58 PAAATTAAPAEGEAAPKPKPPPIGPKRGAKVKIL 91
P+ AA A+G +AP+PKP +G RGA IL
Sbjct: 75 PSTPGCAAAAKGPSAPQPKPASLGRGRGAAAAIL 108
>sp|P20900|PSAE_THEVL Photosystem I reaction center subunit IV (Fragment)
OS=Thermosynechococcus vulcanus GN=psaE PE=1 SV=1
Length = 26
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 19/22 (86%)
Query: 83 KRGAKVKILRRESYWYNGIGSV 104
+RG+KVKILR ESY YN +G+V
Sbjct: 3 QRGSKVKILRPESYVYNEVGTV 24
>sp|Q9NTI5|PDS5B_HUMAN Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens
GN=PDS5B PE=1 SV=1
Length = 1447
Score = 33.1 bits (74), Expect = 0.60, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 37 KNNSSNSFRLVVRASEEAAAPPAAA---TTAAPAEGEAAPKPKPPPIGPKRGAKV 88
+ + S R+ RA + A +P ++A T + P +G P P P PK+ +V
Sbjct: 1339 QKSKSKQHRVSRRAQQRAESPESSAIESTQSTPQKGRGRPSKTPSPSQPKKNVRV 1393
>sp|P25950|MCEL_RFVKA mRNA-capping enzyme catalytic subunit OS=Rabbit fibroma virus
(strain Kasza) GN=D3R PE=3 SV=1
Length = 836
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 94 ESYWYNGIGSVVAVDQDPKSRYPVVVRFNKVNYANVSTNNYALDEIEE 141
E Y+Y I S+VA D D ++ + R+N +N + + + Y D I+E
Sbjct: 598 EKYFYGEISSLVATDPDKEAIGRCIERYNSLN-SGIKSKYYKFDYIQE 644
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,728,812
Number of Sequences: 539616
Number of extensions: 2123051
Number of successful extensions: 17544
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 15839
Number of HSP's gapped (non-prelim): 1559
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)