BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032317
(143 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224093156|ref|XP_002309812.1| predicted protein [Populus trichocarpa]
gi|222852715|gb|EEE90262.1| predicted protein [Populus trichocarpa]
Length = 362
Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 115/141 (81%), Positives = 131/141 (92%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA ICL KYDGDIPSSL++LL LPGIGPKMAHLVMN+ WNNVQGICVDTHVHRICNR
Sbjct: 217 LKKIAKICLLKYDGDIPSSLEDLLSLPGIGPKMAHLVMNIAWNNVQGICVDTHVHRICNR 276
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV++PG KQKTS+PE+TRE LQLWLPK+EWVPINPLLVGFGQTICTP+RPRCGMC +S
Sbjct: 277 LGWVARPGTKQKTSTPEETREALQLWLPKDEWVPINPLLVGFGQTICTPLRPRCGMCCIS 336
Query: 121 ELCPSAFKDSSSPSSKSRKSA 141
E CPSAFK++SSP+SK ++S
Sbjct: 337 EFCPSAFKETSSPASKQKRSG 357
>gi|255587056|ref|XP_002534117.1| endonuclease III, putative [Ricinus communis]
gi|223525829|gb|EEF28268.1| endonuclease III, putative [Ricinus communis]
Length = 357
Score = 255 bits (651), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 114/141 (80%), Positives = 130/141 (92%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA ICL KYDGDIP SL++LL LPGIGPKMAHLVMNV W++VQGICVDTHVHRICNR
Sbjct: 212 LKKIAKICLMKYDGDIPRSLEDLLSLPGIGPKMAHLVMNVAWDDVQGICVDTHVHRICNR 271
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG +QKTS+PE+TR LQLWLPKEEWVPINPLLVGFGQTICTP+RPRCGMCS++
Sbjct: 272 LGWVSRPGTEQKTSNPEETRVALQLWLPKEEWVPINPLLVGFGQTICTPLRPRCGMCSIT 331
Query: 121 ELCPSAFKDSSSPSSKSRKSA 141
E CPSAFK++SSP+SK +KS
Sbjct: 332 EFCPSAFKETSSPASKMKKSG 352
>gi|356541151|ref|XP_003539044.1| PREDICTED: endonuclease III-like protein 1-like [Glycine max]
Length = 354
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/130 (86%), Positives = 123/130 (94%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA ICL KYDGDIPSS+++LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR
Sbjct: 206 LKKIANICLMKYDGDIPSSIEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 265
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+ G KQKTS+PE+TRE LQ WLPKEEWVPINPLLVGFGQTICTP+RPRCG CS+S
Sbjct: 266 LGWVSRLGTKQKTSTPEETREELQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECSIS 325
Query: 121 ELCPSAFKDS 130
ELCPSAFK++
Sbjct: 326 ELCPSAFKET 335
>gi|356547306|ref|XP_003542056.1| PREDICTED: endonuclease III-like protein 1-like [Glycine max]
Length = 290
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 109/139 (78%), Positives = 125/139 (89%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA ICL KYDGDIPSS++ELLLLPG+GPK+AHLVM VGWNNVQGICVDTHVHRICNR
Sbjct: 145 LKKIANICLLKYDGDIPSSIEELLLLPGVGPKIAHLVMIVGWNNVQGICVDTHVHRICNR 204
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG KQKT +PE+TR+ LQ WLPKEEWVPIN LLVGFG+ ICTP+RP CG CSV+
Sbjct: 205 LGWVSRPGSKQKTLTPEETRQALQRWLPKEEWVPINTLLVGFGRAICTPLRPHCGDCSVN 264
Query: 121 ELCPSAFKDSSSPSSKSRK 139
CPSAFK++SS SSKS++
Sbjct: 265 RFCPSAFKETSSLSSKSKR 283
>gi|449468790|ref|XP_004152104.1| PREDICTED: endonuclease III-like protein 1-like [Cucumis sativus]
gi|449521044|ref|XP_004167541.1| PREDICTED: endonuclease III-like protein 1-like [Cucumis sativus]
Length = 386
Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/141 (78%), Positives = 125/141 (88%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA ICL KY GDIP SL ELLLLPGIGPK+AHL+M + WN+VQGICVDTHVHRICNR
Sbjct: 241 LKKIARICLMKYGGDIPRSLAELLLLPGIGPKIAHLIMIMAWNDVQGICVDTHVHRICNR 300
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS G KQKTS+PE+TR L+LWLPKEEWVPINPLLVGFGQTICTP+RP+CG CSVS
Sbjct: 301 LGWVSGKGSKQKTSTPEETRVGLELWLPKEEWVPINPLLVGFGQTICTPLRPKCGNCSVS 360
Query: 121 ELCPSAFKDSSSPSSKSRKSA 141
+LCPSAFK+SSSPS K + S+
Sbjct: 361 DLCPSAFKESSSPSPKLKGSS 381
>gi|18402669|ref|NP_565725.1| endonuclease III [Arabidopsis thaliana]
gi|20198157|gb|AAD26474.2| putative endonuclease [Arabidopsis thaliana]
gi|330253455|gb|AEC08549.1| endonuclease III [Arabidopsis thaliana]
Length = 379
Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 118/130 (90%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MKKIA ICL KYDGDIPSSLD+LL LPGIGPKMAHL++++ WN+VQGICVDTHVHRICNR
Sbjct: 234 MKKIARICLVKYDGDIPSSLDDLLSLPGIGPKMAHLILHIAWNDVQGICVDTHVHRICNR 293
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG KQKT+SPE+TR LQ WLPKEEWV INPLLVGFGQ ICTPIRPRC CSVS
Sbjct: 294 LGWVSRPGTKQKTTSPEETRVALQQWLPKEEWVAINPLLVGFGQMICTPIRPRCEACSVS 353
Query: 121 ELCPSAFKDS 130
+LCP+AFK++
Sbjct: 354 KLCPAAFKET 363
>gi|145330326|ref|NP_001077988.1| endonuclease III [Arabidopsis thaliana]
gi|17380754|gb|AAL36207.1| putative endonuclease [Arabidopsis thaliana]
gi|20259623|gb|AAM14168.1| putative endonuclease [Arabidopsis thaliana]
gi|330253456|gb|AEC08550.1| endonuclease III [Arabidopsis thaliana]
Length = 377
Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 105/130 (80%), Positives = 118/130 (90%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MKKIA ICL KYDGDIPSSLD+LL LPGIGPKMAHL++++ WN+VQGICVDTHVHRICNR
Sbjct: 232 MKKIARICLVKYDGDIPSSLDDLLSLPGIGPKMAHLILHIAWNDVQGICVDTHVHRICNR 291
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG KQKT+SPE+TR LQ WLPKEEWV INPLLVGFGQ ICTPIRPRC CSVS
Sbjct: 292 LGWVSRPGTKQKTTSPEETRVALQQWLPKEEWVAINPLLVGFGQMICTPIRPRCEACSVS 351
Query: 121 ELCPSAFKDS 130
+LCP+AFK++
Sbjct: 352 KLCPAAFKET 361
>gi|297743769|emb|CBI36652.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 234 bits (597), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/139 (85%), Positives = 129/139 (92%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA ICL KYDGDIPSSL+ELLLLPGIGPKMAHLVMNV WNNVQGICVDTHVHRICNR
Sbjct: 234 LKKIAKICLMKYDGDIPSSLEELLLLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNR 293
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+ G KQKTS PE+TRE LQLWLPKEEWVPINPLLVGFGQTICTP+RPRCG+C VS
Sbjct: 294 LGWVSRRGTKQKTSLPEETRESLQLWLPKEEWVPINPLLVGFGQTICTPLRPRCGVCGVS 353
Query: 121 ELCPSAFKDSSSPSSKSRK 139
+LCPSAFK++ SPSSK +K
Sbjct: 354 DLCPSAFKEAQSPSSKMKK 372
>gi|359478121|ref|XP_002264475.2| PREDICTED: endonuclease III-like protein 1-like [Vitis vinifera]
Length = 355
Score = 234 bits (597), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/139 (85%), Positives = 129/139 (92%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA ICL KYDGDIPSSL+ELLLLPGIGPKMAHLVMNV WNNVQGICVDTHVHRICNR
Sbjct: 210 LKKIAKICLMKYDGDIPSSLEELLLLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNR 269
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+ G KQKTS PE+TRE LQLWLPKEEWVPINPLLVGFGQTICTP+RPRCG+C VS
Sbjct: 270 LGWVSRRGTKQKTSLPEETRESLQLWLPKEEWVPINPLLVGFGQTICTPLRPRCGVCGVS 329
Query: 121 ELCPSAFKDSSSPSSKSRK 139
+LCPSAFK++ SPSSK +K
Sbjct: 330 DLCPSAFKEAQSPSSKMKK 348
>gi|21537257|gb|AAM61598.1| putative endonuclease [Arabidopsis thaliana]
Length = 379
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 118/130 (90%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MKKIA ICL KYDGDIPSSLD+LL LPGIGPKMAHL++++ WN+VQGICVDTHVHRICNR
Sbjct: 234 MKKIARICLVKYDGDIPSSLDDLLSLPGIGPKMAHLILHIAWNDVQGICVDTHVHRICNR 293
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG KQKT+SPE+TR LQ WLPKEEWV INPLLVGFGQ ICTP+RPRC CSVS
Sbjct: 294 LGWVSRPGTKQKTTSPEETRVALQQWLPKEEWVAINPLLVGFGQMICTPLRPRCEACSVS 353
Query: 121 ELCPSAFKDS 130
+LCP+AFK++
Sbjct: 354 KLCPAAFKET 363
>gi|11181952|emb|CAC16135.1| endonuclease III homologue [Arabidopsis thaliana]
Length = 354
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/130 (80%), Positives = 118/130 (90%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MKKIA ICL KYDGDIPSSLD+LL LPGIGPKMAHL++++ WN+VQGICVDTHVHRICNR
Sbjct: 209 MKKIARICLVKYDGDIPSSLDDLLSLPGIGPKMAHLILHIAWNDVQGICVDTHVHRICNR 268
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG KQKT+SPE+TR LQ WLPKEEWV INPLLVGFGQ ICTP+RPRC CSVS
Sbjct: 269 LGWVSRPGTKQKTTSPEETRVALQQWLPKEEWVAINPLLVGFGQMICTPLRPRCEACSVS 328
Query: 121 ELCPSAFKDS 130
+LCP+AFK++
Sbjct: 329 KLCPAAFKET 338
>gi|297826589|ref|XP_002881177.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297327016|gb|EFH57436.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 354
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 103/130 (79%), Positives = 119/130 (91%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MKKIA ICL KY+GDIPSSLD+LL LPGIGPKMAHL++++ WN+VQGICVDTHVHRICNR
Sbjct: 209 MKKIARICLVKYNGDIPSSLDDLLSLPGIGPKMAHLILHIAWNDVQGICVDTHVHRICNR 268
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG KQKT+SPE+TR LQ WLPKEEWV INPLLVGFGQTICTP+RPRC CSV+
Sbjct: 269 LGWVSRPGTKQKTTSPEETRVALQQWLPKEEWVAINPLLVGFGQTICTPLRPRCEACSVT 328
Query: 121 ELCPSAFKDS 130
+LCP+AFK++
Sbjct: 329 KLCPAAFKET 338
>gi|297843388|ref|XP_002889575.1| hypothetical protein ARALYDRAFT_470604 [Arabidopsis lyrata subsp.
lyrata]
gi|297335417|gb|EFH65834.1| hypothetical protein ARALYDRAFT_470604 [Arabidopsis lyrata subsp.
lyrata]
Length = 384
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 101/130 (77%), Positives = 117/130 (90%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A ICL KYDGDIP +L+ELL LPG+GPK+AHLV++V WN+VQGICVDTHVHRICNR
Sbjct: 239 VKKVAKICLMKYDGDIPRTLEELLSLPGVGPKIAHLVLHVAWNDVQGICVDTHVHRICNR 298
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG KQKT SPE+TR LQ WLPKEEWV IN LLVGFGQTICTP+RPRCG CS++
Sbjct: 299 LGWVSKPGTKQKTLSPEETRVALQQWLPKEEWVAINFLLVGFGQTICTPLRPRCGTCSIT 358
Query: 121 ELCPSAFKDS 130
ELCPSAFK++
Sbjct: 359 ELCPSAFKET 368
>gi|42571353|ref|NP_973767.1| endonuclease III [Arabidopsis thaliana]
gi|222423369|dbj|BAH19657.1| AT1G05900 [Arabidopsis thaliana]
gi|332189795|gb|AEE27916.1| endonuclease III [Arabidopsis thaliana]
Length = 386
Score = 224 bits (572), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 98/130 (75%), Positives = 116/130 (89%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A ICL +YDGDIP +L+ELL LPG+GPK+AHLV++V WN+VQGICVDTHVHRICNR
Sbjct: 241 VKKVAKICLMEYDGDIPRTLEELLSLPGVGPKIAHLVLHVAWNDVQGICVDTHVHRICNR 300
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG KQKTSSPE+TR LQ WLPK EWV IN LLVGFGQTICTP+RP CG CS++
Sbjct: 301 LGWVSKPGTKQKTSSPEETRVALQQWLPKGEWVAINFLLVGFGQTICTPLRPHCGTCSIT 360
Query: 121 ELCPSAFKDS 130
E+CPSAFK++
Sbjct: 361 EICPSAFKET 370
>gi|357454433|ref|XP_003597497.1| Endonuclease III-like protein [Medicago truncatula]
gi|355486545|gb|AES67748.1| Endonuclease III-like protein [Medicago truncatula]
Length = 331
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 98/130 (75%), Positives = 115/130 (88%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA ICLTKYDGDIP+S++ELL LPG+GPK+AHLVM + WNNVQGICVDTHVHRI NR
Sbjct: 183 LKKIADICLTKYDGDIPNSIEELLSLPGVGPKIAHLVMIIAWNNVQGICVDTHVHRISNR 242
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+PG KQ+TS PE+TR+ L+ WLP+EEWV IN LLVGFG+TICTP+RPRCG C VS
Sbjct: 243 LGWVSRPGTKQRTSIPEETRKALERWLPREEWVAINLLLVGFGRTICTPLRPRCGECGVS 302
Query: 121 ELCPSAFKDS 130
CPSAFK++
Sbjct: 303 RFCPSAFKET 312
>gi|147805787|emb|CAN69482.1| hypothetical protein VITISV_017352 [Vitis vinifera]
Length = 377
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/139 (82%), Positives = 124/139 (89%), Gaps = 5/139 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA ICL KYDGDIPSSL+ELLLLPGIGPKMAHLVMNV WNNVQGICVDTHVHRICNR
Sbjct: 237 LKKIAKICLMKYDGDIPSSLEELLLLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNR 296
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS+ G KQKTSSPE+TRE LQLWLPKEEWVPINPLL TICTP+RP CG+C VS
Sbjct: 297 LGWVSRRGTKQKTSSPEETRESLQLWLPKEEWVPINPLL-----TICTPLRPXCGVCGVS 351
Query: 121 ELCPSAFKDSSSPSSKSRK 139
+LCPSAFK++ SPSSK +K
Sbjct: 352 DLCPSAFKEAQSPSSKMKK 370
>gi|108864224|gb|ABA92590.2| Endonuclease III-like protein 1, putative, expressed [Oryza sativa
Japonica Group]
Length = 362
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 116/139 (83%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ICL ++ GDIP SL+ELL L G+GPKMAHLVM++ W N QGICVDTHVHRI NR
Sbjct: 220 IKEASKICLERFGGDIPDSLNELLALKGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNR 279
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV + G KQKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+C MC ++
Sbjct: 280 LGWVFREGTKQKTTTPEQTRMSLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCDMCGIN 339
Query: 121 ELCPSAFKDSSSPSSKSRK 139
+CPSAFK+SSSP+ K +K
Sbjct: 340 NICPSAFKESSSPNPKQKK 358
>gi|62734175|gb|AAX96284.1| endonuclease III homologue [Oryza sativa Japonica Group]
gi|62734224|gb|AAX96333.1| endonuclease III homologue [Oryza sativa Japonica Group]
gi|218185559|gb|EEC67986.1| hypothetical protein OsI_35754 [Oryza sativa Indica Group]
gi|222615819|gb|EEE51951.1| hypothetical protein OsJ_33589 [Oryza sativa Japonica Group]
Length = 373
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 94/139 (67%), Positives = 116/139 (83%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ICL ++ GDIP SL+ELL L G+GPKMAHLVM++ W N QGICVDTHVHRI NR
Sbjct: 220 IKEASKICLERFGGDIPDSLNELLALKGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNR 279
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV + G KQKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+C MC ++
Sbjct: 280 LGWVFREGTKQKTTTPEQTRMSLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCDMCGIN 339
Query: 121 ELCPSAFKDSSSPSSKSRK 139
+CPSAFK+SSSP+ K +K
Sbjct: 340 NICPSAFKESSSPNPKQKK 358
>gi|6850320|gb|AAF29397.1|AC009999_17 Contains similarity to an endonuclease III homolog from Homo
sapiens gb|U81285, and contains an Endonuclease III
PF|00730 domain [Arabidopsis thaliana]
Length = 402
Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 98/146 (67%), Positives = 116/146 (79%), Gaps = 16/146 (10%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A ICL +YDGDIP +L+ELL LPG+GPK+AHLV++V WN+VQGICVDTHVHRICNR
Sbjct: 241 VKKVAKICLMEYDGDIPRTLEELLSLPGVGPKIAHLVLHVAWNDVQGICVDTHVHRICNR 300
Query: 61 LGWVSQPGRK----------------QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQ 104
LGWVS+PG K QKTSSPE+TR LQ WLPK EWV IN LLVGFGQ
Sbjct: 301 LGWVSKPGTKQFAYLLLVTYLYFVLDQKTSSPEETRVALQQWLPKGEWVAINFLLVGFGQ 360
Query: 105 TICTPIRPRCGMCSVSELCPSAFKDS 130
TICTP+RP CG CS++E+CPSAFK++
Sbjct: 361 TICTPLRPHCGTCSITEICPSAFKET 386
>gi|242084784|ref|XP_002442817.1| hypothetical protein SORBIDRAFT_08g003320 [Sorghum bicolor]
gi|241943510|gb|EES16655.1| hypothetical protein SORBIDRAFT_08g003320 [Sorghum bicolor]
Length = 367
Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/140 (67%), Positives = 116/140 (82%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ICL ++ GDIP SL+ELL L G+GPKMAHLVM++ W N QGICVDTHVHRI NR
Sbjct: 225 IKEASKICLERFGGDIPDSLNELLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNR 284
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV + G KQKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+C C ++
Sbjct: 285 LGWVFREGTKQKTTTPEQTRISLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCDNCGIN 344
Query: 121 ELCPSAFKDSSSPSSKSRKS 140
LCPSAFK+SSSP+ K +K+
Sbjct: 345 NLCPSAFKESSSPNPKQKKT 364
>gi|226499382|ref|NP_001151454.1| endonuclease III-like protein 1 [Zea mays]
gi|195646916|gb|ACG42926.1| endonuclease III-like protein 1 [Zea mays]
Length = 364
Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 93/140 (66%), Positives = 115/140 (82%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ICL ++ GDIP SL+ELL L G+GPKMAHLVM++ W N QGICVDTHVHRI NR
Sbjct: 222 IKEASKICLERFGGDIPDSLNELLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNR 281
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV + G +QKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+C C ++
Sbjct: 282 LGWVFREGTRQKTTTPEQTRISLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCDKCGIN 341
Query: 121 ELCPSAFKDSSSPSSKSRKS 140
LCPSAFK+SSSP K +K+
Sbjct: 342 NLCPSAFKESSSPIPKQKKT 361
>gi|194697286|gb|ACF82727.1| unknown [Zea mays]
Length = 352
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 115/140 (82%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ICL ++ GDIP SL+ELL L G+GPKMAHLVM++ W N QGICVDTHVHRI NR
Sbjct: 210 IKEASKICLERFGGDIPDSLNELLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNR 269
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV + G +QKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+C C ++
Sbjct: 270 LGWVFREGTRQKTTTPEQTRISLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCDKCGIN 329
Query: 121 ELCPSAFKDSSSPSSKSRKS 140
+CPSAFK+SSSP K +K+
Sbjct: 330 NICPSAFKESSSPIPKQKKT 349
>gi|413916132|gb|AFW56064.1| endonuclease III-like protein 1 [Zea mays]
Length = 287
Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 115/140 (82%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ICL ++ GDIP SL+ELL L G+GPKMAHLVM++ W N QGICVDTHVHRI NR
Sbjct: 145 IKEASKICLERFGGDIPDSLNELLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNR 204
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV + G +QKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+C C ++
Sbjct: 205 LGWVFREGTRQKTTTPEQTRISLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCDKCGIN 264
Query: 121 ELCPSAFKDSSSPSSKSRKS 140
+CPSAFK+SSSP K +K+
Sbjct: 265 NICPSAFKESSSPIPKQKKT 284
>gi|413916131|gb|AFW56063.1| hypothetical protein ZEAMMB73_227959 [Zea mays]
Length = 291
Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 92/140 (65%), Positives = 115/140 (82%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ICL ++ GDIP SL+ELL L G+GPKMAHLVM++ W N QGICVDTHVHRI NR
Sbjct: 149 IKEASKICLERFGGDIPDSLNELLALRGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNR 208
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV + G +QKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+C C ++
Sbjct: 209 LGWVFREGTRQKTTTPEQTRISLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCDKCGIN 268
Query: 121 ELCPSAFKDSSSPSSKSRKS 140
+CPSAFK+SSSP K +K+
Sbjct: 269 NICPSAFKESSSPIPKQKKT 288
>gi|357156910|ref|XP_003577617.1| PREDICTED: endonuclease III-like protein 1-like isoform 1
[Brachypodium distachyon]
Length = 370
Score = 207 bits (528), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 113/139 (81%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + +CL ++ GDIP SL ELL L G+GPKMAHLVM++ W N QGICVDTHVHRI NR
Sbjct: 226 IKEASKVCLKRFGGDIPDSLTELLALKGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNR 285
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV + G KQKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+C C ++
Sbjct: 286 LGWVYREGTKQKTTTPEQTRMSLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCVNCGIN 345
Query: 121 ELCPSAFKDSSSPSSKSRK 139
LCPSAFK+ SSP+ K +K
Sbjct: 346 TLCPSAFKEPSSPNPKQKK 364
>gi|357156913|ref|XP_003577618.1| PREDICTED: endonuclease III-like protein 1-like isoform 2
[Brachypodium distachyon]
Length = 359
Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 113/139 (81%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + +CL ++ GDIP SL ELL L G+GPKMAHLVM++ W N QGICVDTHVHRI NR
Sbjct: 215 IKEASKVCLKRFGGDIPDSLTELLALKGVGPKMAHLVMSIAWKNTQGICVDTHVHRISNR 274
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV + G KQKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+C C ++
Sbjct: 275 LGWVYREGTKQKTTTPEQTRMSLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCVNCGIN 334
Query: 121 ELCPSAFKDSSSPSSKSRK 139
LCPSAFK+ SSP+ K +K
Sbjct: 335 TLCPSAFKEPSSPNPKQKK 353
>gi|302801191|ref|XP_002982352.1| hypothetical protein SELMODRAFT_116252 [Selaginella moellendorffii]
gi|300149944|gb|EFJ16597.1| hypothetical protein SELMODRAFT_116252 [Selaginella moellendorffii]
Length = 240
Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 96/138 (69%), Positives = 108/138 (78%), Gaps = 4/138 (2%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A +CL KY GDIP +L ELL LPGIGPKMAHLVMNVGW +V GICVDTHVHRI NR
Sbjct: 103 LKKVAALCLEKYQGDIPKTLSELLALPGIGPKMAHLVMNVGWESVHGICVDTHVHRITNR 162
Query: 61 LGWVSQPGRKQK----TSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGM 116
L WVS P K T +PE+TR L+ WLP+EEWVPINPLLVGFGQTICTP+RPRCG
Sbjct: 163 LEWVSHPKSTSKKRLDTKTPEETRISLESWLPREEWVPINPLLVGFGQTICTPLRPRCGD 222
Query: 117 CSVSELCPSAFKDSSSPS 134
C +S LCP+AFK S S
Sbjct: 223 CLISNLCPAAFKHKGSKS 240
>gi|302766179|ref|XP_002966510.1| hypothetical protein SELMODRAFT_85281 [Selaginella moellendorffii]
gi|300165930|gb|EFJ32537.1| hypothetical protein SELMODRAFT_85281 [Selaginella moellendorffii]
Length = 240
Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/138 (68%), Positives = 107/138 (77%), Gaps = 4/138 (2%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A +CL KY GDIP +L ELL LPGIGPKMAHLVMNVGW +V GICVDTHVHRI NR
Sbjct: 103 LKKVAALCLEKYQGDIPKTLSELLALPGIGPKMAHLVMNVGWESVHGICVDTHVHRITNR 162
Query: 61 LGWVSQPGRKQK----TSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGM 116
L WVS P K T +PE+TR L+ WLP+EEWVPINPLLVGFGQTICTP+RPRCG
Sbjct: 163 LEWVSHPKSTSKKRLDTKTPEETRISLESWLPREEWVPINPLLVGFGQTICTPLRPRCGD 222
Query: 117 CSVSELCPSAFKDSSSPS 134
C +S LCP+A K S S
Sbjct: 223 CLISNLCPAALKHKGSKS 240
>gi|357130118|ref|XP_003566700.1| PREDICTED: LOW QUALITY PROTEIN: endonuclease III-like protein
1-like [Brachypodium distachyon]
Length = 184
Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/146 (58%), Positives = 107/146 (73%), Gaps = 7/146 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHL------VMNVGWNNVQGICVDTHV 54
+K+ + ICL + GDIP SL ELL L G+GPK+A L VM++ W N QGICVDTHV
Sbjct: 35 IKEASKICLEVFGGDIPDSLTELLSLKGVGPKLADLLFFTKQVMSIAWKNTQGICVDTHV 94
Query: 55 HRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRC 114
HRI NRLGWV + G KQKT++PEQTR L+ W PK+EW PIN LLVGFGQTICT +RP+C
Sbjct: 95 HRISNRLGWVYREGTKQKTTTPEQTRMSLEKWSPKDEWEPINLLLVGFGQTICTLLRPKC 154
Query: 115 GMCSVSELCPSAFKDSSSPSSKSRKS 140
C ++ +CPS FK+ S SK+R++
Sbjct: 155 -XCGINTICPSVFKEPSKSKSKARET 179
>gi|412985508|emb|CCO18954.1| predicted protein [Bathycoccus prasinos]
Length = 335
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 77/139 (55%), Positives = 99/139 (71%), Gaps = 5/139 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A IC+ KY GDIP L+ L+ LPG+GPKM HL+MNVGW GICVD HVHRI R
Sbjct: 186 LRAAAKICVEKYGGDIPPDLESLVELPGVGPKMGHLIMNVGWEKPSGICVDVHVHRITER 245
Query: 61 LGWVSQP-----GRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCG 115
LGWVS+ + +PE TR L+ WLPK+EWV INPLLVGFGQ CTP+RP+C
Sbjct: 246 LGWVSESCAVTNAGSPRKRTPEDTRVALENWLPKDEWVEINPLLVGFGQLYCTPLRPKCS 305
Query: 116 MCSVSELCPSAFKDSSSPS 134
C V++LC +AF+D+++P+
Sbjct: 306 ECDVADLCQNAFRDAATPT 324
>gi|145356922|ref|XP_001422672.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582915|gb|ABP00989.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 273
Score = 172 bits (435), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 104/148 (70%), Gaps = 6/148 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A I L +YDGDIPSS++ L LPG+GPKMA+LVMNVGW GICVD HVHRI R
Sbjct: 119 LRATAKILLDEYDGDIPSSVETLCALPGVGPKMAYLVMNVGWQKPTGICVDVHVHRITER 178
Query: 61 LGWVSQPGRKQKTS----SPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGM 116
LGW + + S +PE TR L+ WLP++EW+ INPLLVGFGQ CTP+RP+C
Sbjct: 179 LGWTPERAIGKNGSPRKKTPEDTRASLERWLPRDEWIEINPLLVGFGQLTCTPLRPKCAE 238
Query: 117 C--SVSELCPSAFKDSSSPSSKSRKSAQ 142
C + CPSAFK+S++P+S+ R++ +
Sbjct: 239 CPLAADASCPSAFKESATPTSEKRRAKK 266
>gi|303272029|ref|XP_003055376.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463350|gb|EEH60628.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 298
Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 98/144 (68%), Gaps = 5/144 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A C+ ++ GDIPS +D L+ LPG+GPKMA+LVMNVGW GICVD HVHRI R
Sbjct: 146 LRDAARACVERHGGDIPSDVDGLMALPGVGPKMAYLVMNVGWGVPSGICVDVHVHRIAER 205
Query: 61 LGWV-----SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCG 115
LGWV + G +K +PE TRE L+ WLP+EEW+ INPLLVG GQ C P P+CG
Sbjct: 206 LGWVPSVAFTSNGTPRKNRTPEDTREALEAWLPREEWIEINPLLVGHGQLTCAPKAPKCG 265
Query: 116 MCSVSELCPSAFKDSSSPSSKSRK 139
C+ + +CPSAFKD + +K +
Sbjct: 266 ECAANAMCPSAFKDEEARRAKKEE 289
>gi|308811190|ref|XP_003082903.1| putative endonuclease (ISS) [Ostreococcus tauri]
gi|116054781|emb|CAL56858.1| putative endonuclease (ISS), partial [Ostreococcus tauri]
Length = 820
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 76/144 (52%), Positives = 99/144 (68%), Gaps = 6/144 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A I L +YDGDIP S++ L LPG+GPKMA+LVMNVGW GICVD HVHRI R
Sbjct: 375 LRATAKILLDEYDGDIPPSVETLCALPGVGPKMAYLVMNVGWGEPTGICVDVHVHRISER 434
Query: 61 LGWVSQ----PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGM 116
LGWV++ + +PE TR L+ WLPK EW+ INPLLVGFGQ CTP+RP+C
Sbjct: 435 LGWVAKDVMGKNGSPRKKTPEDTRAALESWLPKHEWIEINPLLVGFGQLTCTPLRPKCHA 494
Query: 117 CSVSE--LCPSAFKDSSSPSSKSR 138
C +++ CPSAFK++ + + +R
Sbjct: 495 CPLAKDGSCPSAFKENPASRATTR 518
>gi|357610921|gb|EHJ67214.1| hypothetical protein KGM_13809 [Danaus plexippus]
Length = 429
Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 95/141 (67%), Gaps = 5/141 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK +YDGDIP S+D+L L G+GPKMAH+ M V WN V GI VDTHVHRI NR
Sbjct: 174 IKKTTQTLKDQYDGDIPDSVDKLCKLTGVGPKMAHICMKVAWNKVTGIGVDTHVHRISNR 233
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GWV K+ TS+PE TR+ LQ WLP E W +N L+VGFGQTIC PI P C C +
Sbjct: 234 IGWV-----KKSTSTPEDTRKALQSWLPFELWSEVNHLMVGFGQTICLPIGPNCQECLNN 288
Query: 121 ELCPSAFKDSSSPSSKSRKSA 141
++CPS+ KD SP +S K +
Sbjct: 289 DICPSSEKDKKSPYKRSPKKS 309
>gi|114051958|ref|NP_001039862.1| endonuclease III-like protein 1 [Bos taurus]
gi|109892805|sp|Q2KID2.1|NTHL1_BOVIN RecName: Full=Endonuclease III-like protein 1
gi|86826431|gb|AAI12682.1| Nth endonuclease III-like 1 (E. coli) [Bos taurus]
gi|296473490|tpg|DAA15605.1| TPA: nth endonuclease III-like 1 [Bos taurus]
Length = 305
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +YDGDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 182 IKQTSAILQQRYDGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 241
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C PIRPRC C
Sbjct: 242 LRWT-----KKATKSPEETRRALEEWLPRELWSEINGLLVGFGQQTCLPIRPRCQACLNR 296
Query: 121 ELCPSA 126
LCP+A
Sbjct: 297 ALCPAA 302
>gi|440913510|gb|ELR62959.1| Endonuclease III-like protein 1, partial [Bos grunniens mutus]
Length = 316
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +YDGDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 193 IKQTSAILQQRYDGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 252
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C PIRPRC C
Sbjct: 253 LRWT-----KKATKSPEETRRALEEWLPRELWSEINGLLVGFGQQTCLPIRPRCQACLNR 307
Query: 121 ELCPSA 126
LCP+A
Sbjct: 308 ALCPAA 313
>gi|417398676|gb|JAA46371.1| Putative endonuclease iii [Desmodus rotundus]
Length = 305
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 87/126 (69%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 182 IKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 241
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW K+KT SPE+TR L+ WLP++ W IN LLVGFGQ IC P+RPRC C
Sbjct: 242 LGWT-----KKKTKSPEETRAALEEWLPRDLWSEINGLLVGFGQQICLPVRPRCQACLNQ 296
Query: 121 ELCPSA 126
LCP+A
Sbjct: 297 ALCPAA 302
>gi|194878547|ref|XP_001974085.1| GG21536 [Drosophila erecta]
gi|190657272|gb|EDV54485.1| GG21536 [Drosophila erecta]
Length = 383
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 87/126 (69%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I + KYD DIP ++ +L+ LPG+GPKMAH+ M V WN + GI VD HVHR+CNR
Sbjct: 261 LKQTVEILIDKYDSDIPDNVKDLIALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLCNR 320
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T PEQTR L+ WLP W +N L VGFGQTICTP++P CG C
Sbjct: 321 LGWVPKP-----TKEPEQTRVALEKWLPFSLWSEVNHLFVGFGQTICTPVKPNCGECLNK 375
Query: 121 ELCPSA 126
++CPSA
Sbjct: 376 DICPSA 381
>gi|330812778|ref|XP_003291295.1| hypothetical protein DICPUDRAFT_155881 [Dictyostelium purpureum]
gi|325078545|gb|EGC32191.1| hypothetical protein DICPUDRAFT_155881 [Dictyostelium purpureum]
Length = 710
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 92/132 (69%), Gaps = 7/132 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K IA I KY+GDIP + E+ LPGIGPKM +L++ + W V+GI VD H+HRICNR
Sbjct: 573 LKSIAEILKEKYNGDIPPTFKEIEALPGIGPKMTNLIVQIAWGRVEGIAVDVHMHRICNR 632
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT++PE+T L+ WLP+E+W +N LLVGFGQTIC P+RP+C C+V+
Sbjct: 633 LGWV-------KTNTPEETMRQLESWLPREKWGQVNHLLVGFGQTICDPVRPKCSSCTVN 685
Query: 121 ELCPSAFKDSSS 132
LCP K+ S
Sbjct: 686 NLCPVGIKEMKS 697
>gi|325193803|emb|CCA28012.1| conserved unknown protein putative [Albugo laibachii Nc14]
Length = 319
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/134 (56%), Positives = 95/134 (70%), Gaps = 5/134 (3%)
Query: 1 MKKIAPICLTKY--DG--DIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHR 56
+KK+A I + DG DIP +++ L+ LPG+GPKMA+LVMNV WN GICVDTHVHR
Sbjct: 183 IKKVASILKERESEDGICDIPETVENLVALPGVGPKMAYLVMNVAWNKPVGICVDTHVHR 242
Query: 57 ICNRLGWVSQPGRKQ-KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCG 115
ICNRLGWVS +K K PE+TR+ L+ WLP E W IN LLVGFGQTIC +P+C
Sbjct: 243 ICNRLGWVSTWNKKNPKAQDPEKTRKELEAWLPSEHWDSINQLLVGFGQTICHARQPKCK 302
Query: 116 MCSVSELCPSAFKD 129
C++ +CPSA K+
Sbjct: 303 DCALQSICPSASKN 316
>gi|384490585|gb|EIE81807.1| hypothetical protein RO3G_06512 [Rhizopus delemar RA 99-880]
Length = 322
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 88/126 (69%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I +YDGDIP +++ L LPG+GPKM +L + V WN GI VD HVHRI NR
Sbjct: 157 IKKTAEILRDQYDGDIPDTIEGLTSLPGVGPKMGYLTLQVAWNKNLGIGVDVHVHRITNR 216
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS T +PE+TRE LQ WLPK++W INP+LVG+GQ +C P PRC +C VS
Sbjct: 217 LGWVS-------TKTPEETRESLQSWLPKDKWKKINPILVGYGQIVCLPRNPRCDVCPVS 269
Query: 121 ELCPSA 126
E CPS+
Sbjct: 270 EYCPSS 275
>gi|195437932|ref|XP_002066893.1| GK24310 [Drosophila willistoni]
gi|194162978|gb|EDW77879.1| GK24310 [Drosophila willistoni]
Length = 351
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 92/136 (67%), Gaps = 5/136 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + + L KY GDIP ++ +L+ LPG+GPKMAH+ M+V W+ + GI VD HVHRI NR
Sbjct: 221 LKQTSEVLLDKYGGDIPDNVKDLIGLPGVGPKMAHICMSVAWHKITGIGVDVHVHRISNR 280
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ P T PEQTR L+ WLPK W +N L VGFGQTICTP++P C C
Sbjct: 281 LGWLKTP-----TKEPEQTRLGLEKWLPKSLWSEVNHLFVGFGQTICTPVKPNCAQCLNR 335
Query: 121 ELCPSAFKDSSSPSSK 136
++CPSA+K+ + K
Sbjct: 336 DVCPSAYKNETKTKKK 351
>gi|195030160|ref|XP_001987936.1| GH10834 [Drosophila grimshawi]
gi|193903936|gb|EDW02803.1| GH10834 [Drosophila grimshawi]
Length = 373
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 6/139 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I + KY+ DIP ++ ELL LPG+GPKMAH+ M WN + GI VDTHVHRI NR
Sbjct: 237 LKKTSQILVDKYNEDIPDNIPELLKLPGVGPKMAHICMATAWNQITGIGVDTHVHRIANR 296
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W+S + T PEQTR L+ WLP++ W +N L VGFGQT+CTP+RP C C
Sbjct: 297 LAWLS-----KSTKEPEQTRIQLETWLPRQLWAEVNHLFVGFGQTVCTPLRPNCSECLNR 351
Query: 121 ELCP-SAFKDSSSPSSKSR 138
++CP SA S P SK++
Sbjct: 352 DICPASALAKKSEPKSKTK 370
>gi|351711290|gb|EHB14209.1| Endonuclease III-like protein 1 [Heterocephalus glaber]
Length = 298
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +YDGDIP+SL EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 175 IKQTSAILQQRYDGDIPASLAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 234
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W ++ T SPE+TR L+ WLP+E W IN LLVGFGQ IC PI PRC C
Sbjct: 235 LRWT-----RRMTKSPEETRAALEEWLPRELWHEINGLLVGFGQQICLPIHPRCQACLNQ 289
Query: 121 ELCPSA 126
LCP+A
Sbjct: 290 ALCPAA 295
>gi|194219367|ref|XP_001915373.1| PREDICTED: LOW QUALITY PROTEIN: endonuclease III-like protein
1-like [Equus caballus]
Length = 312
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +YDGDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQRYDGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LRWT-----KKTTKSPEETRTALEEWLPRELWREINGLLVGFGQQTCLPVRPRCQACLNR 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|432102524|gb|ELK30095.1| Endonuclease III-like protein 1 [Myotis davidii]
Length = 312
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I YDGDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQNYDGDIPASVTELMALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP++ W IN LLVGFGQ IC P+RPRC C
Sbjct: 249 LRWT-----KKVTKSPEETRAALEDWLPRDLWSEINGLLVGFGQQICLPVRPRCQTCLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|330812766|ref|XP_003291289.1| hypothetical protein DICPUDRAFT_8477 [Dictyostelium purpureum]
gi|325078539|gb|EGC32185.1| hypothetical protein DICPUDRAFT_8477 [Dictyostelium purpureum]
Length = 235
Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/132 (53%), Positives = 92/132 (69%), Gaps = 7/132 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K IA I KY+GDIP + E+ LPGIGPKM +L++ + W V+GI VD H+HRICNR
Sbjct: 98 LKSIAEILKEKYNGDIPPTFKEIEALPGIGPKMTNLIVQIAWGRVEGIAVDVHMHRICNR 157
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT++PE+T L+ WLP+E+W +N LLVGFGQTIC P+RP+C C+V+
Sbjct: 158 LGWV-------KTNTPEETMRQLESWLPREKWGQVNHLLVGFGQTICDPVRPKCSSCTVN 210
Query: 121 ELCPSAFKDSSS 132
LCP K+ S
Sbjct: 211 NLCPVGIKEMKS 222
>gi|195351989|ref|XP_002042498.1| GM23290 [Drosophila sechellia]
gi|194124367|gb|EDW46410.1| GM23290 [Drosophila sechellia]
Length = 378
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 88/138 (63%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I + KY DIP ++ +L+ LPG+GPKMAH+ M V WN + GI VD HVHR+ NR
Sbjct: 246 LKQTVDILMDKYGSDIPDNVKDLVALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLSNR 305
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T PEQTR L+ WLP W +N L VGFGQTICTP++P CG C
Sbjct: 306 LGWVPKP-----TKEPEQTRVALEKWLPFSLWSEVNHLFVGFGQTICTPVKPNCGECLNK 360
Query: 121 ELCPSAFKDSSSPSSKSR 138
E+CPSA + K R
Sbjct: 361 EICPSAHAEIKEKKKKDR 378
>gi|195148504|ref|XP_002015213.1| GL19581 [Drosophila persimilis]
gi|194107166|gb|EDW29209.1| GL19581 [Drosophila persimilis]
Length = 396
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 87/126 (69%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I + KYD DIP+++ EL+ LPG+GPKMAH+ M V W+ + GI VD HVHRI NR
Sbjct: 264 LKQTTQILIDKYDSDIPNNVKELIALPGVGPKMAHICMAVAWDKLTGIGVDVHVHRISNR 323
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ +P T PEQTR L+ WLP W +N L VGFGQT+CTP++P CG C
Sbjct: 324 LGWLPRP-----TKEPEQTRVALESWLPSTLWAEVNHLFVGFGQTVCTPLKPNCGQCLNK 378
Query: 121 ELCPSA 126
++CPSA
Sbjct: 379 DICPSA 384
>gi|213408176|ref|XP_002174859.1| endonuclease III-like protein [Schizosaccharomyces japonicus
yFS275]
gi|212002906|gb|EEB08566.1| endonuclease III-like protein [Schizosaccharomyces japonicus
yFS275]
Length = 361
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/145 (51%), Positives = 96/145 (66%), Gaps = 9/145 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I KYDGDIP +++ L+ LPG+GPKM +L + V WN + GI VD HVHRI N
Sbjct: 155 LKKTAKILKEKYDGDIPDTIEGLMELPGVGPKMGYLCLGVAWNKIDGIGVDVHVHRISNL 214
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV T + EQTR LQ WLPKE W+ +N +LVGFGQ IC P RC +C+++
Sbjct: 215 LGWVH-------TKTEEQTRLALQSWLPKELWLDVNHMLVGFGQMICLPRGRRCDICTLA 267
Query: 121 E--LCPSAFKDSSSPSSKSRKSAQK 143
E LCPSAF ++S S +S+K K
Sbjct: 268 ENNLCPSAFTENSRISKQSKKGQAK 292
>gi|198474869|ref|XP_002132792.1| GA26017 [Drosophila pseudoobscura pseudoobscura]
gi|198138583|gb|EDY70194.1| GA26017 [Drosophila pseudoobscura pseudoobscura]
Length = 396
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I + KYD DIP++ EL+ LPG+GPKMAH+ M V W+ + GI VD HVHRI NR
Sbjct: 264 LKQTTQILIDKYDSDIPNNAKELIALPGVGPKMAHICMAVAWDKLTGIGVDVHVHRISNR 323
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ +P T PEQTR L+ WLP W +N L VGFGQT+CTP++P CG C
Sbjct: 324 LGWLPRP-----TKEPEQTRVALESWLPSTLWAEVNHLFVGFGQTVCTPLKPNCGQCLNK 378
Query: 121 ELCPSA 126
++CPSA
Sbjct: 379 DICPSA 384
>gi|340374045|ref|XP_003385549.1| PREDICTED: endonuclease III-like protein 1-like [Amphimedon
queenslandica]
Length = 295
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 88/127 (69%), Gaps = 5/127 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I K++GDIP SL+ L+ LPG+GPKMAHL M++ W NV GI VDTHVHRI NR
Sbjct: 171 LKKTAQILKEKHNGDIPESLEGLMALPGVGPKMAHLCMDIAWGNVTGIGVDTHVHRIANR 230
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV +P T +PE TR+ L+ WLP+ EW N LLVGFGQ IC P+RP+C C
Sbjct: 231 LKWVKKP-----TKTPEDTRKGLEEWLPQSEWSSANLLLVGFGQQICLPLRPKCSECLNK 285
Query: 121 ELCPSAF 127
+CPS+
Sbjct: 286 SICPSSL 292
>gi|195580555|ref|XP_002080101.1| GD21665 [Drosophila simulans]
gi|194192110|gb|EDX05686.1| GD21665 [Drosophila simulans]
Length = 388
Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 88/138 (63%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I + KY DIP ++ +L+ LPG+GPKMAH+ M V WN + GI VD HVHR+ NR
Sbjct: 256 LKQTVDILMDKYGSDIPDNVKDLVALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLSNR 315
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T PEQTR L+ WLP W +N L VGFGQTICTP++P CG C
Sbjct: 316 LGWVPKP-----TKEPEQTRVALEKWLPFSLWSEVNHLFVGFGQTICTPVKPNCGECLNK 370
Query: 121 ELCPSAFKDSSSPSSKSR 138
++CPSA + K R
Sbjct: 371 DICPSAHAEIKEKKKKDR 388
>gi|45550361|ref|NP_610078.2| CG9272 [Drosophila melanogaster]
gi|45445193|gb|AAF53949.2| CG9272 [Drosophila melanogaster]
Length = 388
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 88/138 (63%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I KY DIP ++ +L+ LPG+GPKMAH+ M V WN + GI VD HVHR+ NR
Sbjct: 256 LKQTVEILTDKYGSDIPDNVKDLVALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLSNR 315
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T PEQTR L+ WLP W +N L VGFGQTICTP++P CG C
Sbjct: 316 LGWVPKP-----TKEPEQTRVALEKWLPFSLWSEVNHLFVGFGQTICTPVKPNCGECLNK 370
Query: 121 ELCPSAFKDSSSPSSKSR 138
++CPSA ++ K R
Sbjct: 371 DICPSAHAETKEKRKKDR 388
>gi|308481910|ref|XP_003103159.1| CRE-NTH-1 protein [Caenorhabditis remanei]
gi|308260264|gb|EFP04217.1| CRE-NTH-1 protein [Caenorhabditis remanei]
Length = 299
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 89/126 (70%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A I + KY GDIP SLD L LPG+GPKMA+LVM + WN +GI VDTHVHRI NR
Sbjct: 126 LQQTAKILVDKYSGDIPDSLDGLCSLPGVGPKMANLVMQIAWNKCEGIAVDTHVHRISNR 185
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KT +PE+TR+ L++ LPK EW PIN LLVGFGQ +C P+RP+C C
Sbjct: 186 LGWI-------KTDTPEKTRKALEILLPKSEWQPINHLLVGFGQMLCQPLRPKCSTCLCR 238
Query: 121 ELCPSA 126
CPS+
Sbjct: 239 FTCPSS 244
>gi|432847899|ref|XP_004066205.1| PREDICTED: endonuclease III-like protein 1-like [Oryzias latipes]
Length = 416
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 92/136 (67%), Gaps = 7/136 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I ++ GDIPS ++ L+ LPG+GPKMAHL M++ WN V GI VDTHVHRI NR
Sbjct: 242 LKKTSAILQEQFGGDIPSDVEGLVRLPGVGPKMAHLAMDIAWNQVSGIGVDTHVHRISNR 301
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T +PE TR L+ WLP++ W IN LLVGFGQ +C P+ P C MC
Sbjct: 302 LGWVRKP-----TKTPEDTRRALEEWLPRDLWSQINWLLVGFGQQMCLPVGPLCSMCLNQ 356
Query: 121 ELCPSAFKDSSSPSSK 136
CPSA K SSP+ K
Sbjct: 357 HSCPSAHK--SSPAKK 370
>gi|348584800|ref|XP_003478160.1| PREDICTED: endonuclease III-like protein 1-like [Cavia porcellus]
Length = 309
Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y+GDIP+SL EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 186 IKQTSAILKQRYNGDIPASLAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 245
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP++ W IN LLVGFGQ IC P PRC C
Sbjct: 246 LKWT-----KRMTKSPEETRAALEEWLPRQLWSEINGLLVGFGQQICLPTHPRCQTCLNQ 300
Query: 121 ELCPSA 126
LCPSA
Sbjct: 301 ALCPSA 306
>gi|380790641|gb|AFE67196.1| endonuclease III-like protein 1 [Macaca mulatta]
Length = 312
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSTILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCQACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|109127234|ref|XP_001082772.1| PREDICTED: nth endonuclease III-like 1 [Macaca mulatta]
Length = 312
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSTILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCQACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|332240056|ref|XP_003269206.1| PREDICTED: endonuclease III-like protein 1 [Nomascus leucogenys]
Length = 312
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W +V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGSVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LRWT-----KKATKSPEETRVALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCQACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|113205550|ref|NP_001037884.1| nth endonuclease III-like 1 [Xenopus (Silurana) tropicalis]
gi|89267879|emb|CAJ83279.1| nth endonuclease III-like 1 (E. coli) [Xenopus (Silurana)
tropicalis]
gi|166796488|gb|AAI59396.1| nth endonuclease III-like 1 (E. coli) [Xenopus (Silurana)
tropicalis]
Length = 300
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 90/128 (70%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I KY GDIP ++ +L+ LPG+GPKMAHLVM++ WNNV GI VDTHVHRI NR
Sbjct: 174 IKQTTEILQEKYGGDIPDNVTDLVKLPGVGPKMAHLVMDIAWNNVSGIGVDTHVHRISNR 233
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV +++T +PE+TR ++ W+P+E W IN LLVGFGQ +C P+ PRC C
Sbjct: 234 LKWV-----RKETKTPEETRVAMEDWMPRELWSEINWLLVGFGQQVCLPVSPRCSECLNK 288
Query: 121 ELCPSAFK 128
++CP A K
Sbjct: 289 DICPGAKK 296
>gi|297697807|ref|XP_002826033.1| PREDICTED: endonuclease III-like protein 1 [Pongo abelii]
Length = 312
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCQACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|66818201|ref|XP_642760.1| hypothetical protein DDB_G0277247 [Dictyostelium discoideum AX4]
gi|60470837|gb|EAL68809.1| hypothetical protein DDB_G0277247 [Dictyostelium discoideum AX4]
Length = 349
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 90/132 (68%), Gaps = 7/132 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA I KY+GDIP + E+ LPGIGPKM +L++ + W V+GI VD H+HRI NR
Sbjct: 214 LKKIAEILKNKYNGDIPPTFKEIEQLPGIGPKMTNLIVQIAWGRVEGIAVDVHMHRISNR 273
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT +PE+T + L+ WLPKE W +N LLVGFGQTIC+P+ P+C C V+
Sbjct: 274 LGWV-------KTKTPEETMKDLESWLPKENWATVNHLLVGFGQTICSPVNPKCSNCLVN 326
Query: 121 ELCPSAFKDSSS 132
LCP + +S
Sbjct: 327 NLCPVGIIEMNS 338
>gi|426380776|ref|XP_004057037.1| PREDICTED: endonuclease III-like protein 1 [Gorilla gorilla
gorilla]
Length = 312
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCHACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|395835757|ref|XP_003790839.1| PREDICTED: endonuclease III-like protein 1 [Otolemur garnettii]
Length = 312
Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M VGW V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVGWGIVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 249 LGWT-----KKATKSPEETRGALEEWLPRELWSEINGLLVGFGQQTCLPLHPRCPTCLNY 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|402907295|ref|XP_003916412.1| PREDICTED: endonuclease III-like protein 1 [Papio anubis]
Length = 312
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSTILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCQACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|383413091|gb|AFH29759.1| endonuclease III-like protein 1 [Macaca mulatta]
Length = 312
Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSTILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCQACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|355709857|gb|EHH31321.1| Endonuclease III-like protein 1, partial [Macaca mulatta]
Length = 280
Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 157 IKQTSTILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 216
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 217 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCQACLNQ 271
Query: 121 ELCPSA 126
LCP+A
Sbjct: 272 ALCPAA 277
>gi|260801749|ref|XP_002595758.1| hypothetical protein BRAFLDRAFT_200910 [Branchiostoma floridae]
gi|229281005|gb|EEN51770.1| hypothetical protein BRAFLDRAFT_200910 [Branchiostoma floridae]
Length = 239
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 95/143 (66%), Gaps = 7/143 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I +Y GDIP+++ E++ LPG+GPKMA+L M+VGW V+GICVDTHVHRI NR
Sbjct: 104 IKNTTQILKDQYGGDIPATVAEMVKLPGVGPKMAYLTMDVGWGKVEGICVDTHVHRISNR 163
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ +P T PE TR L+ WLP+E W +N LLVGFGQ C P+ P+C C
Sbjct: 164 LGWLKKP-----TKVPEDTRVALEEWLPREHWSELNWLLVGFGQQTCLPVSPKCSGCLNK 218
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
E+CP F S SK++KS +K
Sbjct: 219 EICP--FGKSQLRYSKNKKSPKK 239
>gi|339249321|ref|XP_003373648.1| putative G patch domain-containing protein 1-like protein
[Trichinella spiralis]
gi|316970197|gb|EFV54175.1| putative G patch domain-containing protein 1-like protein
[Trichinella spiralis]
Length = 1154
Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK I ++YDGDIP S+DEL LPG+GPKMA L M WN +GI VDTHVHRI NR
Sbjct: 1022 IKKTTEILQSQYDGDIPKSVDELCQLPGVGPKMALLTMLTAWNQCEGIAVDTHVHRISNR 1081
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ P T PEQTR+ L+ WLPK W IN LLVGFGQT+C P+ P C C
Sbjct: 1082 LGWLPSP-----TKQPEQTRKGLENWLPKSYWPQINKLLVGFGQTVCLPVNPHCSNCLNF 1136
Query: 121 ELCPSA 126
+CP A
Sbjct: 1137 SICPHA 1142
>gi|40714570|gb|AAR88543.1| RE40459p [Drosophila melanogaster]
Length = 391
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 87/136 (63%), Gaps = 5/136 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I KY DIP ++ +L+ LPG+GPKMAH+ M V WN + GI VD HVHR+ NR
Sbjct: 261 LKQTVEILTDKYGSDIPDNVKDLVALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLSNR 320
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T PEQTR L+ WLP W +N L VGFGQTICTP++P CG C
Sbjct: 321 LGWVPKP-----TKEPEQTRVALEKWLPFSLWSEVNHLFVGFGQTICTPVKPNCGECLNK 375
Query: 121 ELCPSAFKDSSSPSSK 136
++CPSA ++ K
Sbjct: 376 DICPSAHAETKEKKKK 391
>gi|410985533|ref|XP_003999075.1| PREDICTED: endonuclease III-like protein 1 [Felis catus]
Length = 323
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 200 IKQTSAILQQRYGGDIPDSVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 259
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW K T+SPE+TR L+ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 260 LGWT-----KTATNSPEKTRAALEEWLPRELWGEINGLLVGFGQQTCLPVHPRCQGCLNR 314
Query: 121 ELCPSA 126
LCP+A
Sbjct: 315 TLCPAA 320
>gi|195475998|ref|XP_002090269.1| GE13013 [Drosophila yakuba]
gi|194176370|gb|EDW89981.1| GE13013 [Drosophila yakuba]
Length = 387
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 87/129 (67%), Gaps = 6/129 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I + KYD DIP+++ EL+ LPG+GPKMAH+ M V WN + GI VD HVHR+ NR
Sbjct: 261 LKLTVEILIDKYDSDIPNNVKELVALPGVGPKMAHICMAVAWNKITGIGVDVHVHRLSNR 320
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T PEQTR L+ WLP W +N L VGFGQTICTP++P C C
Sbjct: 321 LGWVPKP-----TKEPEQTRVALEKWLPFSLWSEVNHLFVGFGQTICTPVKPNCVECLNK 375
Query: 121 ELCPSA-FK 128
++CPSA FK
Sbjct: 376 DICPSAHFK 384
>gi|355756457|gb|EHH60065.1| Endonuclease III-like protein 1 [Macaca fascicularis]
Length = 245
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 122 IKQTSTILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 181
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 182 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCQACLNQ 236
Query: 121 ELCPSA 126
LCP+A
Sbjct: 237 ALCPAA 242
>gi|397472431|ref|XP_003807747.1| PREDICTED: endonuclease III-like protein 1 [Pan paniscus]
Length = 312
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVRPRCHTCLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|118601744|ref|NP_001073043.1| endonuclease III-like protein 1 [Gallus gallus]
gi|118341820|dbj|BAF37123.1| Escherichia coli endonuclease III-like 1 [Gallus gallus]
Length = 281
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I KY GDIP +++EL+ LPG+GPKMAHL MN+ WN+V GI VDTHVHRI NR
Sbjct: 158 IKQTTAILKQKYGGDIPGTVEELVKLPGVGPKMAHLAMNIAWNSVSGIAVDTHVHRITNR 217
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV K++T PE+TR L+ WLP++ W IN LLVGFGQ C P+ PRC C
Sbjct: 218 LKWV-----KKETRYPEETRVALEDWLPRDLWREINWLLVGFGQQTCLPVNPRCKECLNQ 272
Query: 121 ELCPSA 126
++CP+A
Sbjct: 273 DICPAA 278
>gi|156563964|dbj|BAF76070.1| Escherichia coli endonuclease III-like 1 [Gallus gallus]
Length = 281
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I KY GDIP +++EL+ LPG+GPKMAHL MN+ WN+V GI VDTHVHRI NR
Sbjct: 158 IKQTTAILKQKYGGDIPGTVEELVKLPGVGPKMAHLAMNIAWNSVSGIAVDTHVHRITNR 217
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV K++T PE+TR L+ WLP++ W IN LLVGFGQ C P+ PRC C
Sbjct: 218 LKWV-----KKETRYPEETRVALEDWLPRDLWREINWLLVGFGQQTCLPVNPRCKECLNQ 272
Query: 121 ELCPSA 126
++CP+A
Sbjct: 273 DICPTA 278
>gi|344292206|ref|XP_003417819.1| PREDICTED: endonuclease III-like protein 1-like [Loxodonta
africana]
Length = 314
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIPSS+ EL+ LPG+GPKMAHL M W V GI VDTHVHRI NR
Sbjct: 191 IKQTSAILQQRYGGDIPSSVAELVALPGVGPKMAHLAMATAWGTVSGIAVDTHVHRIANR 250
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K++T +PEQTR L+ WLP+E W IN LLVGFGQ IC P+ PRC C
Sbjct: 251 LRWT-----KKQTKAPEQTRAALEEWLPRELWGEINTLLVGFGQQICLPLHPRCQNCLNQ 305
Query: 121 ELCPSA 126
LCP+A
Sbjct: 306 VLCPAA 311
>gi|341900542|gb|EGT56477.1| CBN-NTH-1 protein [Caenorhabditis brenneri]
Length = 298
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 89/126 (70%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A I KY GDIP SLD L LPG+GPKMA+LVM + W+ +GI VDTHVHRI NR
Sbjct: 118 LQQTARILTDKYSGDIPDSLDGLCSLPGVGPKMANLVMQIAWDKCEGIAVDTHVHRISNR 177
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KTS+PE+T++ L++ LPK EW PIN LLVGFGQ +C P+RP+C C
Sbjct: 178 LGWI-------KTSTPEKTQKALEILLPKSEWQPINHLLVGFGQMLCQPVRPKCSTCLCK 230
Query: 121 ELCPSA 126
CPS+
Sbjct: 231 FTCPSS 236
>gi|301782301|ref|XP_002926577.1| PREDICTED: LOW QUALITY PROTEIN: endonuclease III-like protein
1-like [Ailuropoda melanoleuca]
Length = 316
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+++ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 190 IKQTSAILQQRYGGDIPATVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 249
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW + T SPE+TR L+ WLP+E W IN LLVGFGQ +C P PRC C
Sbjct: 250 LGWT-----ETATKSPEKTRAALEAWLPRELWSEINGLLVGFGQQVCLPTHPRCQDCLNR 304
Query: 121 ELCPSA 126
LCP+A
Sbjct: 305 GLCPAA 310
>gi|427777899|gb|JAA54401.1| Putative endonuclease iii [Rhipicephalus pulchellus]
Length = 321
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + L KYDGDIP S++ L LPG+GPKMA+L M+ GW GI VDTHVHRI NR
Sbjct: 194 LKQTAKVLLEKYDGDIPDSVEGLCSLPGVGPKMAYLAMSCGWGRTVGIGVDTHVHRISNR 253
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ P T +PEQTR+ L+ WLP+E W +N LLVGFGQT+C P P+C C
Sbjct: 254 LGWLPAP-----TKTPEQTRKALEAWLPRELWDEVNHLLVGFGQTVCKPAGPKCSSCLNV 308
Query: 121 ELCPSAFK 128
+LCP K
Sbjct: 309 QLCPFGKK 316
>gi|383858638|ref|XP_003704806.1| PREDICTED: endonuclease III-like protein 1-like [Megachile
rotundata]
Length = 394
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 86/129 (66%), Gaps = 5/129 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I + KYD DIP +L EL LPG+GPKM+H+ M + W V GI VDTHVHRICNR
Sbjct: 266 IKKTAGILIDKYDSDIPRTLKELCELPGVGPKMSHICMQIAWGEVSGIGVDTHVHRICNR 325
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GWV +P T +PEQTR ++ WLPK W +N LLVGFGQ IC P P+C C
Sbjct: 326 MGWVKKP-----TKTPEQTRTAVEEWLPKNLWSEVNHLLVGFGQEICLPRFPKCNECLNR 380
Query: 121 ELCPSAFKD 129
+CP + K+
Sbjct: 381 NICPFSTKN 389
>gi|427783639|gb|JAA57271.1| Putative endonuclease iii [Rhipicephalus pulchellus]
Length = 306
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 86/124 (69%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + L KYDGDIP S++ L LPG+GPKMA+L M+ GW GI VDTHVHRI NR
Sbjct: 179 LKQTAKVLLEKYDGDIPDSVEGLCSLPGVGPKMAYLAMSCGWGRTVGIGVDTHVHRISNR 238
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ P T +PEQTR+ L+ WLP+E W +N LLVGFGQT+C P P+C C
Sbjct: 239 LGWLPAP-----TKTPEQTRKALEAWLPRELWDEVNHLLVGFGQTVCKPAGPKCSSCLNV 293
Query: 121 ELCP 124
+LCP
Sbjct: 294 QLCP 297
>gi|328720736|ref|XP_001949525.2| PREDICTED: endonuclease III-like protein 1-like [Acyrthosiphon
pisum]
Length = 280
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 90/136 (66%), Gaps = 5/136 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I Y+GDIP+++ +L LPGIGPKMAHL M+ WN V GI VDTHVHRI NR
Sbjct: 150 IKRTTRILKDTYNGDIPNTIKDLCQLPGIGPKMAHLCMSCAWNEVTGIGVDTHVHRISNR 209
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV K+ T +PE TR L+ WLPKE W +N +LVGFGQTIC PI P C C
Sbjct: 210 LGWV-----KKATKTPENTRIALESWLPKELWREVNHMLVGFGQTICRPIGPHCDSCLNK 264
Query: 121 ELCPSAFKDSSSPSSK 136
+ CPSA +S++ K
Sbjct: 265 KTCPSAVSNSTTIKKK 280
>gi|195385699|ref|XP_002051542.1| GJ16118 [Drosophila virilis]
gi|194147999|gb|EDW63697.1| GJ16118 [Drosophila virilis]
Length = 353
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I + KY+ DIP ++ ELL LPG+GPKMAH+ M WN + GI VDTHVHRI NR
Sbjct: 225 LKQTSQILVDKYNEDIPDNIQELLKLPGVGPKMAHICMATAWNKITGIGVDTHVHRIANR 284
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W+ K+ T PEQTR L+ WLP+ W +N LLVGFGQTICTP+RP C C
Sbjct: 285 LAWL-----KKSTKEPEQTRVQLESWLPRPLWSEVNHLLVGFGQTICTPVRPNCSECLNR 339
Query: 121 ELCPSA 126
+CP++
Sbjct: 340 HICPAS 345
>gi|281342124|gb|EFB17708.1| hypothetical protein PANDA_016228 [Ailuropoda melanoleuca]
Length = 266
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+++ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 143 IKQTSAILQQRYGGDIPATVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 202
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW + T SPE+TR L+ WLP+E W IN LLVGFGQ +C P PRC C
Sbjct: 203 LGWT-----ETATKSPEKTRAALEAWLPRELWSEINGLLVGFGQQVCLPTHPRCQDCLNR 257
Query: 121 ELCPSA 126
LCP+A
Sbjct: 258 GLCPAA 263
>gi|403273321|ref|XP_003928467.1| PREDICTED: endonuclease III-like protein 1 [Saimiri boliviensis
boliviensis]
Length = 304
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 181 IKQTSAILQQRYGGDIPASVAELMALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRITNR 240
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 241 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCQGCLNQ 295
Query: 121 ELCPSA 126
LCP+A
Sbjct: 296 ALCPAA 301
>gi|195115659|ref|XP_002002374.1| GI17349 [Drosophila mojavensis]
gi|193912949|gb|EDW11816.1| GI17349 [Drosophila mojavensis]
Length = 341
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 87/127 (68%), Gaps = 5/127 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I + KY+ DIP+++ ELL LPG+GPKMAH+ M W + GI VDTHVHRI NR
Sbjct: 215 LKQTSEILVDKYNEDIPNNIKELLKLPGVGPKMAHICMATAWQEITGIGVDTHVHRIANR 274
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W+ +P T PEQTR L+ WLP+ W +N LLVGFGQTICTP++P C C
Sbjct: 275 LAWLKKP-----TKEPEQTRIQLESWLPRPLWAEVNHLLVGFGQTICTPVKPNCSECLNK 329
Query: 121 ELCPSAF 127
++CP+A
Sbjct: 330 DICPAAL 336
>gi|157787119|ref|NP_001099198.1| endonuclease III-like protein 1 [Rattus norvegicus]
gi|149052032|gb|EDM03849.1| nth (endonuclease III)-like 1 (E.coli) (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 300
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y+GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 177 IKQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 236
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+ W IN LLVGFGQ IC P+ PRC C
Sbjct: 237 LKWT-----KKMTKSPEETRRNLEEWLPRVLWSEINGLLVGFGQQICLPVHPRCQACLNK 291
Query: 121 ELCPSA 126
LCP+A
Sbjct: 292 ALCPAA 297
>gi|311251810|ref|XP_003124777.1| PREDICTED: endonuclease III-like protein 1-like [Sus scrofa]
Length = 312
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI R
Sbjct: 189 IKQTSAILQQRYGGDIPASVPELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIAGR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRC C
Sbjct: 249 LKWT-----KKATKSPEKTRTALEEWLPRELWSEINGLLVGFGQQTCLPVRPRCQACLNR 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|391340717|ref|XP_003744683.1| PREDICTED: endonuclease III-like protein 1-like [Metaseiulus
occidentalis]
Length = 340
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/145 (48%), Positives = 96/145 (66%), Gaps = 7/145 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K+A IC +YD DIP S++EL LPG+GPKMA+L MN W GI VDTHVHR+ R
Sbjct: 183 LRKVAQICFERYDSDIPHSVEELCQLPGVGPKMAYLTMNCAWKETTGIGVDTHVHRLAQR 242
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
W+ K +T SPE TR L+ WLP + W +N LLVGFGQT+C P P+C C ++
Sbjct: 243 WLWLP----KGQTKSPEDTRLQLESWLPSDLWEELNWLLVGFGQTVCGPTHPKCSECLIN 298
Query: 121 ELCPSAFKDS---SSPSSKSRKSAQ 142
++CP+AFK++ +SP K + S +
Sbjct: 299 DVCPNAFKENKKKASPEGKKKASPE 323
>gi|156354363|ref|XP_001623365.1| predicted protein [Nematostella vectensis]
gi|156210057|gb|EDO31265.1| predicted protein [Nematostella vectensis]
Length = 239
Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 87/126 (69%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK IC +Y GDIP ++ EL+ LPG+GPKMAH+ M+V W + GI VDTHVHRICNR
Sbjct: 103 IKKATNICKAQYQGDIPCTISELVELPGVGPKMAHICMSVAWGQLTGIGVDTHVHRICNR 162
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW +P T +PE++R ++ WLP+EEW +N LLVGFGQ IC P+ P C C
Sbjct: 163 LGWTKKP-----TKTPEESRLAVEAWLPREEWSELNVLLVGFGQQICLPVGPNCQSCLNR 217
Query: 121 ELCPSA 126
++CP A
Sbjct: 218 DICPGA 223
>gi|1753174|gb|AAC51136.1| endonuclease III [Homo sapiens]
gi|1881376|dbj|BAA19413.1| endonuclease III homolog [Homo sapiens]
gi|3550834|dbj|BAA32695.1| NTHL1/NTH1 [Homo sapiens]
gi|12804311|gb|AAH03014.1| NTHL1 protein [Homo sapiens]
Length = 304
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 181 IKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 240
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 241 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQ 295
Query: 121 ELCPSA 126
LCP+A
Sbjct: 296 ALCPAA 301
>gi|38197140|gb|AAH00391.2| NTHL1 protein, partial [Homo sapiens]
Length = 305
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 182 IKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 241
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 242 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQ 296
Query: 121 ELCPSA 126
LCP+A
Sbjct: 297 ALCPAA 302
>gi|1772974|emb|CAA70865.1| endonuclease III homologue 1 [Homo sapiens]
Length = 303
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 180 IKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 239
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 240 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQ 294
Query: 121 ELCPSA 126
LCP+A
Sbjct: 295 ALCPAA 300
>gi|1800271|gb|AAB41534.1| endonuclease III homolog 1, hNTH1 [Homo sapiens]
Length = 312
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|4505471|ref|NP_002519.1| endonuclease III-like protein 1 [Homo sapiens]
gi|29840795|sp|P78549.2|NTHL1_HUMAN RecName: Full=Endonuclease III-like protein 1
gi|20136744|gb|AAM11786.1|AF498098_1 nth endonuclease III-like 1 (E. coli) [Homo sapiens]
gi|3522921|gb|AAC34209.1| hNTH1 [Homo sapiens]
gi|119605968|gb|EAW85562.1| nth endonuclease III-like 1 (E. coli) [Homo sapiens]
gi|261860536|dbj|BAI46790.1| nth endonuclease III-like protein 1 [synthetic construct]
gi|311350018|gb|ADP92214.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350020|gb|ADP92215.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350022|gb|ADP92216.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350024|gb|ADP92217.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350026|gb|ADP92218.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350028|gb|ADP92219.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350030|gb|ADP92220.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350032|gb|ADP92221.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350034|gb|ADP92222.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350036|gb|ADP92223.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350038|gb|ADP92224.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350040|gb|ADP92225.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350042|gb|ADP92226.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350044|gb|ADP92227.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350046|gb|ADP92228.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350048|gb|ADP92229.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350050|gb|ADP92230.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350052|gb|ADP92231.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350054|gb|ADP92232.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350056|gb|ADP92233.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350058|gb|ADP92234.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350060|gb|ADP92235.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350062|gb|ADP92236.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350064|gb|ADP92237.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350066|gb|ADP92238.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350068|gb|ADP92239.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350070|gb|ADP92240.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350072|gb|ADP92241.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350074|gb|ADP92242.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350076|gb|ADP92243.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350078|gb|ADP92244.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350080|gb|ADP92245.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350082|gb|ADP92246.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350084|gb|ADP92247.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350086|gb|ADP92248.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350088|gb|ADP92249.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350090|gb|ADP92250.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350092|gb|ADP92251.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350094|gb|ADP92252.1| endonuclease III-like protein 1 [Homo sapiens]
gi|311350096|gb|ADP92253.1| endonuclease III-like protein 1 [Homo sapiens]
Length = 312
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>gi|326929092|ref|XP_003210705.1| PREDICTED: endonuclease III-like protein 1-like [Meleagris
gallopavo]
Length = 272
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 88/126 (69%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I Y GDIPS++++L+ LPG+GPKMAHL MN+ WN+V GI VDTHVHRI NR
Sbjct: 149 IKQTTAILKQNYGGDIPSTVEDLVKLPGVGPKMAHLAMNIAWNSVTGIAVDTHVHRITNR 208
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV K++T PE+TR L+ WLP++ W IN LLVGFGQ C P+ PRC C
Sbjct: 209 LKWV-----KKETRYPEETRVALEDWLPRDLWREINWLLVGFGQQTCLPVNPRCKECLNQ 263
Query: 121 ELCPSA 126
++CP+A
Sbjct: 264 DICPAA 269
>gi|194766301|ref|XP_001965263.1| GF24230 [Drosophila ananassae]
gi|190617873|gb|EDV33397.1| GF24230 [Drosophila ananassae]
Length = 395
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I + KYD DIP + EL LPG+GPKMAH+ M V WN V GI VD HVHR+ NR
Sbjct: 263 LKQTVQILIEKYDSDIPDTPKELKALPGVGPKMAHICMAVAWNKVTGIGVDVHVHRLSNR 322
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV +P T PEQTR L+ WLP W + PLLVGFGQTICTP++P C C
Sbjct: 323 LKWVPRP-----TKEPEQTRVALEKWLPYSLWSEVTPLLVGFGQTICTPLKPNCRECLNK 377
Query: 121 ELCPSA 126
++CPSA
Sbjct: 378 DICPSA 383
>gi|392894668|ref|NP_001254908.1| Protein NTH-1, isoform b [Caenorhabditis elegans]
gi|293324783|emb|CBK55599.1| Protein NTH-1, isoform b [Caenorhabditis elegans]
Length = 224
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K A I + GDIP SLD L LPG+GPKMA+LVM + W GI VDTHVHRI NR
Sbjct: 53 LQKTAKILKDDFSGDIPDSLDGLCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNR 112
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KTS+PE+T++ L++ LPK EW PIN LLVGFGQ C P+RP+CG C
Sbjct: 113 LGWI-------KTSTPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPKCGTCLCR 165
Query: 121 ELCPSA 126
CPS+
Sbjct: 166 FTCPSS 171
>gi|340716729|ref|XP_003396847.1| PREDICTED: endonuclease III-like protein 1-like [Bombus terrestris]
Length = 352
Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 85/124 (68%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I + KY+GDIP +L+EL LPG+GPKMAH+ M + W V GI VDTHVHRICNR
Sbjct: 223 IKKTSKILIEKYNGDIPRTLEELCQLPGVGPKMAHICMQIAWGEVSGIGVDTHVHRICNR 282
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T PE TR ++ WLPK+ W +N LLVGFGQ IC P P+C C
Sbjct: 283 LGWVKKP-----TKIPEDTRIAVEEWLPKDLWSEVNYLLVGFGQEICLPRFPKCDECLNK 337
Query: 121 ELCP 124
++CP
Sbjct: 338 DICP 341
>gi|392894664|ref|NP_001254906.1| Protein NTH-1, isoform d [Caenorhabditis elegans]
gi|341941198|sp|P54137.2|NTH1_CAEEL RecName: Full=Probable endonuclease III homolog; AltName:
Full=CeNTH; AltName: Full=DNA-(Apurinic or apyrimidinic
site) lyase
gi|256773103|dbj|BAI22676.1| homolog of human endonuclease III [Caenorhabditis elegans]
gi|257145792|emb|CAA90766.2| Protein NTH-1, isoform d [Caenorhabditis elegans]
Length = 298
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K A I + GDIP SLD L LPG+GPKMA+LVM + W GI VDTHVHRI NR
Sbjct: 127 LQKTAKILKDDFSGDIPDSLDGLCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNR 186
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KTS+PE+T++ L++ LPK EW PIN LLVGFGQ C P+RP+CG C
Sbjct: 187 LGWI-------KTSTPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPKCGTCLCR 239
Query: 121 ELCPSA 126
CPS+
Sbjct: 240 FTCPSS 245
>gi|227908769|ref|NP_032769.2| endonuclease III-like protein 1 [Mus musculus]
Length = 300
Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y+GDIP+S+ EL+ LPG+GPKMAHL M V W + GI VDTHVHRI NR
Sbjct: 177 IKQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANR 236
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T +PE+TR+ L+ WLP+ W +N LLVGFGQ IC P+ PRC C
Sbjct: 237 LRWT-----KKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLPVHPRCQACLNK 291
Query: 121 ELCPSA 126
LCP+A
Sbjct: 292 ALCPAA 297
>gi|392894666|ref|NP_001254907.1| Protein NTH-1, isoform a [Caenorhabditis elegans]
gi|293324782|emb|CBK55598.1| Protein NTH-1, isoform a [Caenorhabditis elegans]
Length = 293
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K A I + GDIP SLD L LPG+GPKMA+LVM + W GI VDTHVHRI NR
Sbjct: 122 LQKTAKILKDDFSGDIPDSLDGLCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNR 181
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KTS+PE+T++ L++ LPK EW PIN LLVGFGQ C P+RP+CG C
Sbjct: 182 LGWI-------KTSTPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPKCGTCLCR 234
Query: 121 ELCPSA 126
CPS+
Sbjct: 235 FTCPSS 240
>gi|19114122|ref|NP_593210.1| DNA endonuclease III [Schizosaccharomyces pombe 972h-]
gi|1351660|sp|Q09907.1|NTH1_SCHPO RecName: Full=Endonuclease III homolog; AltName: Full=DNA-(apurinic
or apyrimidinic site) lyase
gi|1065894|emb|CAA91893.1| DNA endonuclease III [Schizosaccharomyces pombe]
gi|62122683|dbj|BAD93307.1| DNA endonuclease III [Schizosaccharomyces pombe]
Length = 355
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I K+ GDIP ++++L+ LPG+GPKM +L M++ WN GI VD HVHRICN
Sbjct: 111 LKQMARILSEKFQGDIPDTVEDLMTLPGVGPKMGYLCMSIAWNKTVGIGVDVHVHRICNL 170
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W + T + EQTR LQ WLPKE W +N LVGFGQTIC P RC MC++S
Sbjct: 171 LHWCN-------TKTEEQTRAALQSWLPKELWFELNHTLVGFGQTICLPRGRRCDMCTLS 223
Query: 121 E--LCPSAFKDSSSPSSKSRK 139
LCPSAFK+ S + RK
Sbjct: 224 SKGLCPSAFKEKSGITITKRK 244
>gi|449273757|gb|EMC83166.1| Endonuclease III-like protein 1, partial [Columba livia]
Length = 256
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 87/126 (69%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I KY GDIP +++EL+ LPG+GPKMAHL M + W++V GI VDTHVHRI NR
Sbjct: 133 IKQTTAILKQKYGGDIPRTVEELVQLPGVGPKMAHLAMTIAWDSVSGIAVDTHVHRITNR 192
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV K++T PE+TR L+ WLP++ W IN LLVGFGQ C P+ PRC C
Sbjct: 193 LKWV-----KKETRHPEETRVALEDWLPRDLWREINWLLVGFGQQTCLPVNPRCNECLNR 247
Query: 121 ELCPSA 126
+LCP+A
Sbjct: 248 DLCPAA 253
>gi|307185012|gb|EFN71241.1| Endonuclease III-like protein 1 [Camponotus floridanus]
Length = 349
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I L KYDGDIP ++ EL LPG+GPKM H+ M + W V GI VDTHVHRICNR
Sbjct: 219 IKKTSVILLDKYDGDIPKTIKELCELPGVGPKMGHICMQIAWGEVSGIGVDTHVHRICNR 278
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W+ +P T +PE+TR L+ WLPK W IN LLVGFGQ IC P P+C C
Sbjct: 279 LEWMKKP-----TKTPEETRNELEDWLPKSLWSKINYLLVGFGQEICLPRFPKCDECLNK 333
Query: 121 ELCPSA 126
+CP A
Sbjct: 334 NICPYA 339
>gi|301105551|ref|XP_002901859.1| endonuclease III, HhH-GPD superfamily base excision DNA repair,
putative [Phytophthora infestans T30-4]
gi|262099197|gb|EEY57249.1| endonuclease III, HhH-GPD superfamily base excision DNA repair,
putative [Phytophthora infestans T30-4]
Length = 287
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 92/143 (64%), Gaps = 7/143 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I T++ GDIP SLDELL LPGIGPK+ ++ + W V GI VDTHVHR+ R
Sbjct: 141 LKRVAAILRTRFHGDIPRSLDELLQLPGIGPKIGRVITLLAWGQVDGIVVDTHVHRLAQR 200
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW S T++PE TR+ L+ W+PKE W ++ ++VGFGQT+CT P C C ++
Sbjct: 201 LGWSS-------TTTPEDTRKELEDWIPKEHWGKLSLVVVGFGQTVCTAKHPSCSKCPLA 253
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
CPSAFK +S S K K
Sbjct: 254 TKCPSAFKVVASNSKKRTSQTNK 276
>gi|390369569|ref|XP_793669.3| PREDICTED: endonuclease III-like protein 1-like [Strongylocentrotus
purpuratus]
Length = 445
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 86/124 (69%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y GDIP SL EL+ LPG+GPKMAH+VM+VGWN + GI VDTHVHRI NR
Sbjct: 302 IKRTTQILKDQYQGDIPPSLKELIQLPGVGPKMAHIVMDVGWNQITGIGVDTHVHRISNR 361
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV +++T +PE TR L+ WLP++ W +N LLVGFGQ C P+ PRC C
Sbjct: 362 LKWV-----QKETKTPEATRVSLEDWLPRDLWSEVNVLLVGFGQQTCLPVGPRCLECLNK 416
Query: 121 ELCP 124
++CP
Sbjct: 417 DICP 420
>gi|45593498|sp|O35980.1|NTHL1_MOUSE RecName: Full=Endonuclease III-like protein 1
gi|2351099|dbj|BAA22080.1| endonuclease III homologue [Mus musculus]
gi|2407946|emb|CAA70866.1| endonuclease III homologue 1 [Mus musculus]
gi|3219302|dbj|BAA28846.1| homologue of endonuclease III [Mus musculus]
gi|6688669|emb|CAB65239.1| Endonuclease III homologue 1 [Mus musculus]
gi|148690400|gb|EDL22347.1| nth (endonuclease III)-like 1 (E.coli), isoform CRA_b [Mus
musculus]
gi|187952063|gb|AAI38853.1| Nth (endonuclease III)-like 1 (E.coli) [Mus musculus]
gi|187954093|gb|AAI38856.1| Nth (endonuclease III)-like 1 (E.coli) [Mus musculus]
Length = 300
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y+GDIP+S+ EL+ LPG+GPKMAHL M V W + GI VDTHVHRI NR
Sbjct: 177 IKQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANR 236
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T +PE+TR+ L+ WLP+ W +N LLVGFGQ IC P+ PRC C
Sbjct: 237 LRWT-----KKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLPVHPRCQACLNK 291
Query: 121 ELCPSA 126
LCP+A
Sbjct: 292 ALCPAA 297
>gi|126335528|ref|XP_001366843.1| PREDICTED: endonuclease III-like protein 1-like [Monodelphis
domestica]
Length = 292
Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+++ EL+ LPG+GPKMAHL M + W+ V GI VDTHVHRI NR
Sbjct: 169 IKQTSKILKQQYGGDIPATVAELVALPGVGPKMAHLAMAIAWDTVSGIAVDTHVHRITNR 228
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T PE+TR L+ WLP++ W IN LLVGFGQ IC P+ PRCG C
Sbjct: 229 LKWT-----KKGTKYPEETRAALEDWLPRQLWKEINWLLVGFGQQICLPVNPRCGNCLNR 283
Query: 121 ELCPSA 126
LCP+A
Sbjct: 284 GLCPAA 289
>gi|219519404|gb|AAI45444.1| Nthl1 protein [Mus musculus]
Length = 280
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y+GDIP+S+ EL+ LPG+GPKMAHL M V W + GI VDTHVHRI NR
Sbjct: 157 IKQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANR 216
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T +PE+TR+ L+ WLP+ W +N LLVGFGQ IC P+ PRC C
Sbjct: 217 LRWT-----KKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLPVHPRCQACLNK 271
Query: 121 ELCPSA 126
LCP+A
Sbjct: 272 ALCPAA 277
>gi|146078123|ref|XP_001463464.1| putative endonuclease III [Leishmania infantum JPCM5]
gi|398010980|ref|XP_003858686.1| endonuclease III, putative [Leishmania donovani]
gi|134067550|emb|CAM65829.1| putative endonuclease III [Leishmania infantum JPCM5]
gi|322496896|emb|CBZ31966.1| endonuclease III, putative [Leishmania donovani]
Length = 258
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 92/138 (66%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I + YDG++P EL+ LPG+GPKMA+L + V GI VDTHVHRI R
Sbjct: 109 IKEVAAILMKNYDGEVPREYAELIALPGVGPKMANLFFQDADHRVIGIGVDTHVHRISQR 168
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +PE TR+ L+ WLP+E W IN L+VG GQT+CTP+RP+CG+C +S
Sbjct: 169 YRWVPST-----VKTPEDTRKALESWLPREHWGTINSLMVGLGQTVCTPLRPKCGICELS 223
Query: 121 ELCPSAFKDSSSPSSKSR 138
++CP+AFK++ +++
Sbjct: 224 DICPNAFKETQQKRLRAK 241
>gi|449303226|gb|EMC99234.1| hypothetical protein BAUCODRAFT_31576 [Baudoinia compniacensis UAMH
10762]
Length = 437
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 89/129 (68%), Gaps = 9/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I +YDGDIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 249 IKKVAVILRDQYDGDIPDTIEGLVSLPGVGPKMAYLCMSAAWGRDEGIGVDVHVHRITNL 308
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KTS+PEQTR L+ WLP+++W IN LLVGFGQTIC P+ RCG C ++
Sbjct: 309 WGW-------HKTSTPEQTRAELEAWLPRDKWHDINHLLVGFGQTICVPVGRRCGECDLA 361
Query: 121 E--LCPSAF 127
+ LCPSA
Sbjct: 362 KEGLCPSAV 370
>gi|390333159|ref|XP_001200032.2| PREDICTED: endonuclease III-like protein 1-like [Strongylocentrotus
purpuratus]
Length = 409
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 86/124 (69%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y GDIP SL EL+ LPG+GPKMAH+VM+VGWN + GI VDTHVHRI NR
Sbjct: 278 IKRTTQILKDQYQGDIPPSLKELIQLPGVGPKMAHIVMDVGWNQITGIGVDTHVHRISNR 337
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV +++T +PE TR L+ WLP++ W +N LLVGFGQ C P+ PRC C
Sbjct: 338 LKWV-----QKETKTPEATRVSLEDWLPRDLWSEVNVLLVGFGQQTCLPVGPRCLECLNK 392
Query: 121 ELCP 124
++CP
Sbjct: 393 DICP 396
>gi|410917257|ref|XP_003972103.1| PREDICTED: endonuclease III-like protein 1-like [Takifugu rubripes]
Length = 357
Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 90/130 (69%), Gaps = 5/130 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + + ++ GDIP S++ L+ LPG+GPKMAHL M++ W+ V GI VDTHVHRI NR
Sbjct: 202 LKLTSAMLQKEFGGDIPDSVEGLVRLPGVGPKMAHLAMDIAWDQVSGIGVDTHVHRISNR 261
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ +P T +PE+TR+ L+ WLP+E W IN LLVGFGQ +C P+ P C +C
Sbjct: 262 LGWLKKP-----TKTPEETRKSLEEWLPRELWSEINWLLVGFGQQVCLPVSPLCSVCLNQ 316
Query: 121 ELCPSAFKDS 130
CPSA K+S
Sbjct: 317 HDCPSAHKNS 326
>gi|444727310|gb|ELW67811.1| Endonuclease III-like protein 1 [Tupaia chinensis]
Length = 258
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 82/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 135 IKQTSAILQQRYAGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 194
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE TR L+ WLP+ W IN LLVGFGQ C P RPRC C
Sbjct: 195 LKWT-----KKTTKSPEATRVALEEWLPRGLWSEINGLLVGFGQQTCLPARPRCHTCLNQ 249
Query: 121 ELCPSA 126
LCP+A
Sbjct: 250 TLCPAA 255
>gi|292610084|ref|XP_001346643.3| PREDICTED: RUN domain containing 3A [Danio rerio]
Length = 430
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ++ GDIP++++ L+ LPG+GPKMAHL M++ WN V GI VDTHVHRI NR
Sbjct: 227 IKQATALIQQEFGGDIPNTVEGLIRLPGVGPKMAHLAMDIAWNQVSGIGVDTHVHRISNR 286
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW K++T +PE+TR L+ WLP++ W IN LLVGFGQ +C P+ P C +C
Sbjct: 287 LGWT-----KKETKTPEETRRALEEWLPRDLWSEINWLLVGFGQQVCLPVGPLCSVCLNQ 341
Query: 121 ELCPSAFK 128
CPSA +
Sbjct: 342 HTCPSAHR 349
>gi|395515750|ref|XP_003762062.1| PREDICTED: endonuclease III-like protein 1 [Sarcophilus harrisii]
Length = 297
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP++++EL+ LPG+GPKMAHL M + W V GI VDTHVHRI NR
Sbjct: 174 IKQTSKILKQQYGGDIPATVEELVALPGVGPKMAHLAMAIAWGKVSGIAVDTHVHRITNR 233
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K++T PE+TR L+ WLP++ W IN LLVGFGQ C P+ PRCG C
Sbjct: 234 LKWT-----KKETKYPEETRAALEDWLPRQLWKEINWLLVGFGQQTCLPVNPRCGDCLNQ 288
Query: 121 ELCPSA 126
LCP+A
Sbjct: 289 GLCPAA 294
>gi|380012945|ref|XP_003690533.1| PREDICTED: endonuclease III-like protein 1-like [Apis florea]
Length = 363
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/124 (54%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK I + KYD DIP +L EL L G+GPKMAH+ M + W V GI VDTHVHRICNR
Sbjct: 232 IKKTTNILIDKYDSDIPKTLKELCQLSGVGPKMAHICMQIAWGEVSGIGVDTHVHRICNR 291
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T +PE TR ++ WLPK W IN LLVGFGQ IC P P+C C
Sbjct: 292 LGWVKKP-----TKTPEDTRIAVEEWLPKNLWSEINYLLVGFGQEICLPRFPKCDECLNK 346
Query: 121 ELCP 124
++CP
Sbjct: 347 DICP 350
>gi|195999308|ref|XP_002109522.1| hypothetical protein TRIADDRAFT_21050 [Trichoplax adhaerens]
gi|190587646|gb|EDV27688.1| hypothetical protein TRIADDRAFT_21050 [Trichoplax adhaerens]
Length = 292
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 85/124 (68%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + + KY+ DIP +LDEL LPGIGPKMAHL+M WN+V GI VDTHVHRI NR
Sbjct: 168 IKRTTAMLIEKYNKDIPPTLDELKALPGIGPKMAHLIMLSAWNSVVGIGVDTHVHRISNR 227
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV +P T+ PE+TR L+ WLP+ EW IN L+VGFGQTIC PI P C C
Sbjct: 228 LKWVKKP-----TTDPEKTRIALEEWLPRNEWREINCLMVGFGQTICLPINPLCDNCLNK 282
Query: 121 ELCP 124
+CP
Sbjct: 283 PICP 286
>gi|348536721|ref|XP_003455844.1| PREDICTED: endonuclease III-like protein 1-like [Oreochromis
niloticus]
Length = 419
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 91/130 (70%), Gaps = 5/130 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + + ++ GDIP+S++ L+ LPG+GPKMAHL M++ W+ V GI VDTHVHRI NR
Sbjct: 236 LKLTSAMLQKEFGGDIPNSVEGLVRLPGVGPKMAHLAMDIAWDQVSGIGVDTHVHRISNR 295
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ ++ T +PE+TR+ L+ WLP+E W IN LLVGFGQ +C P+ P C +C
Sbjct: 296 LGWL-----RKATKNPEETRKALEEWLPRELWSEINWLLVGFGQQVCLPVNPLCSVCLNQ 350
Query: 121 ELCPSAFKDS 130
CPSA K+S
Sbjct: 351 HSCPSAHKNS 360
>gi|148690399|gb|EDL22346.1| nth (endonuclease III)-like 1 (E.coli), isoform CRA_a [Mus
musculus]
Length = 277
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y+GDIP+S+ EL+ LPG+GPKMAHL M V W + GI VDTHVHRI NR
Sbjct: 154 IKQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANR 213
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T +PE+TR+ L+ WLP+ W +N LLVGFGQ IC P+ PRC C
Sbjct: 214 LRWT-----KKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLPVHPRCQACLNK 268
Query: 121 ELCPSA 126
LCP+A
Sbjct: 269 ALCPAA 274
>gi|298709647|emb|CBJ31456.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 289
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/138 (52%), Positives = 92/138 (66%), Gaps = 3/138 (2%)
Query: 2 KKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRL 61
K++A + G IP +++ LL LPG+GPKM +LVM+V W +GICVDTHVHRI NRL
Sbjct: 152 KRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRL 211
Query: 62 GWVSQPGRKQ-KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWV R + K +PE+TR+ LQ WLP+E W +N LLVGFGQ +C RP C C +S
Sbjct: 212 GWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATRPSCSACGIS 271
Query: 121 ELCPSAFK--DSSSPSSK 136
LCPSA + D + P SK
Sbjct: 272 GLCPSADRHGDLALPPSK 289
>gi|281202379|gb|EFA76584.1| putative endonuclease III [Polysphondylium pallidum PN500]
Length = 470
Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 90/132 (68%), Gaps = 8/132 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKI I KY GDIP + ++++ LPGIG KM +L++ W V+GI VD H+HRICNR
Sbjct: 326 LKKIVNIMKEKYKGDIPEAYNDIMSLPGIGLKMTNLIVQ-AWGRVEGIAVDVHMHRICNR 384
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV+ T++PE+T + LQ W+P++ W IN LLVGFGQT+C P RP+C C ++
Sbjct: 385 LGWVN-------TNTPEETTKALQDWVPRDRWAEINKLLVGFGQTVCAPTRPKCESCKIN 437
Query: 121 ELCPSAFKDSSS 132
LCP+ ++ S
Sbjct: 438 HLCPTGIQNMKS 449
>gi|405957861|gb|EKC24039.1| Endonuclease III-like protein 1 [Crassostrea gigas]
Length = 259
Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 89/135 (65%), Gaps = 5/135 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y+GDIP ++++L LPG+GPKMA+LVM WN + GI VDTHVHRI NR
Sbjct: 117 IKRTSKILQEEYNGDIPDTVEKLCKLPGVGPKMAYLVMKCAWNQIVGIGVDTHVHRISNR 176
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T PE TR+ LQ WLP+E W I+ LLVGFGQ C P+ P+C C
Sbjct: 177 LGWVKKP-----TKQPEDTRKELQDWLPREYWRDIDELLVGFGQQTCLPVGPKCYECLNK 231
Query: 121 ELCPSAFKDSSSPSS 135
E+CP + PSS
Sbjct: 232 EICPVGKSNKKMPSS 246
>gi|328777513|ref|XP_623602.3| PREDICTED: endonuclease III-like protein 1-like [Apis mellifera]
Length = 354
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 81/124 (65%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK I + KYD DIP +L EL L G+GPKMAH+ M + W V GI VDTHVHRICNR
Sbjct: 223 IKKTTTILIDKYDSDIPKTLKELCQLSGVGPKMAHICMQIAWGEVSGIGVDTHVHRICNR 282
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +P T +PE TR ++ WLP+ W IN LLVGFGQ IC P P+C C
Sbjct: 283 LGWVKKP-----TKTPEDTRIAVEEWLPRNLWSEINYLLVGFGQEICLPRFPKCDECLNK 337
Query: 121 ELCP 124
++CP
Sbjct: 338 DICP 341
>gi|126631837|gb|AAI33923.1| LOC100008368 protein [Danio rerio]
Length = 340
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ++ GDIP++++ L+ LPG+GPKMAHL M++ WN V GI VDTHVHRI NR
Sbjct: 137 IKQATALIQQEFGGDIPNTVEGLIRLPGVGPKMAHLAMDIAWNQVSGIGVDTHVHRISNR 196
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW K++T +PE+TR L+ WLP++ W IN LLVGFGQ +C P+ P C +C
Sbjct: 197 LGWT-----KKETKTPEETRRALEEWLPRDLWSEINWLLVGFGQQVCLPVGPLCSVCLNQ 251
Query: 121 ELCPSAFK 128
CPSA +
Sbjct: 252 HTCPSAHR 259
>gi|350421872|ref|XP_003492984.1| PREDICTED: endonuclease III-like protein 1-like [Bombus impatiens]
Length = 352
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I + KY+GDIP +L EL LPG+GPKM+H+ M + W V GI VDTHVHRICNR
Sbjct: 223 IKKTSKILIEKYNGDIPRTLKELCQLPGVGPKMSHICMQIAWGEVSGIGVDTHVHRICNR 282
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV K+ T PE TR ++ WLPK+ W +N LLVGFGQ IC P P+C C
Sbjct: 283 LGWV-----KKSTKIPEDTRIAVEEWLPKDLWSEVNYLLVGFGQEICLPRFPKCDECLNK 337
Query: 121 ELCP 124
++CP
Sbjct: 338 DICP 341
>gi|241682023|ref|XP_002401078.1| endonuclease, putative [Ixodes scapularis]
gi|215504370|gb|EEC13864.1| endonuclease, putative [Ixodes scapularis]
Length = 326
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 89/132 (67%), Gaps = 5/132 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + + L +YDGDIP S++ L LPG+GPKM++L M+ GW GI VDTHVHRI N
Sbjct: 195 LKRTSQVLLDEYDGDIPDSIEGLCKLPGVGPKMSYLAMSCGWKRTVGIGVDTHVHRISNW 254
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ Q T +PEQTR+ L+ WLP++ W +N LLVGFGQT+C P+ P+C C
Sbjct: 255 LGWLPQA-----TKTPEQTRKALEAWLPRDLWDEVNLLLVGFGQTVCKPVAPKCSSCLNL 309
Query: 121 ELCPSAFKDSSS 132
+LCP K +S
Sbjct: 310 QLCPYGRKQVNS 321
>gi|354478697|ref|XP_003501551.1| PREDICTED: endonuclease III-like protein 1-like [Cricetulus
griseus]
gi|344248342|gb|EGW04446.1| Endonuclease III-like protein 1 [Cricetulus griseus]
Length = 300
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y+GDIP+S+ EL+ LPG+GPKMAHL M V W + GI VDTHVHRI NR
Sbjct: 177 IKQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRITNR 236
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K T +PE+TR L+ WLP+ W IN L+VGFGQ IC P+ P+C C
Sbjct: 237 LRWT-----KNVTKTPEETRTALEEWLPRGLWSEINGLMVGFGQQICLPVHPQCQACLNQ 291
Query: 121 ELCPSA 126
LCP+A
Sbjct: 292 ALCPAA 297
>gi|300120326|emb|CBK19880.2| unnamed protein product [Blastocystis hominis]
Length = 198
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 87/132 (65%), Gaps = 8/132 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK I L KYDGDIP +++EL+ LPG+GPKM +L + V WN + GI VD HVHRI NR
Sbjct: 53 IKKTTDILLEKYDGDIPDTIEELVKLPGVGPKMGYLALKVAWNKIDGIGVDVHVHRISNR 112
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV T++PEQTR L+ WLPK+ W IN LLVGFGQ IC P+C C +
Sbjct: 113 LEWVH-------TNTPEQTRVALEAWLPKQYWFEINLLLVGFGQQICKG-SPKCSECKLR 164
Query: 121 ELCPSAFKDSSS 132
+CPS+ + SS
Sbjct: 165 NMCPSSKYNVSS 176
>gi|307196709|gb|EFN78168.1| Endonuclease III-like protein 1 [Harpegnathos saltator]
Length = 368
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 86/129 (66%), Gaps = 5/129 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I L KY+GDIP ++ EL LPG+GPKMAH+ M + W V GI VDTHVHRI NR
Sbjct: 239 IKKTSVILLNKYNGDIPRTIKELCDLPGVGPKMAHICMQIAWGEVSGIGVDTHVHRISNR 298
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV RKQ T +PE+TR L+ WLPK W +N LLVGFGQ IC P P+C C
Sbjct: 299 LEWV----RKQ-TKTPEETRNELEDWLPKPLWSEVNHLLVGFGQEICLPRFPKCSECLNK 353
Query: 121 ELCPSAFKD 129
++CP K+
Sbjct: 354 DICPYDRKN 362
>gi|332028140|gb|EGI68191.1| Endonuclease III-like protein 1 [Acromyrmex echinatior]
Length = 341
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 82/128 (64%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I L KY GDIP ++ EL LPG+GPKMAHL M W V GI VDTHVHRI NR
Sbjct: 213 IKKTSVILLDKYGGDIPKTVKELCELPGVGPKMAHLCMRTAWGEVSGIGVDTHVHRIANR 272
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV K+ T +PEQTR L+ WLPK W +N LLVGFGQ C P P+C C
Sbjct: 273 LGWV-----KKLTKTPEQTRNELEDWLPKPLWSEVNHLLVGFGQETCLPRFPKCSECLNK 327
Query: 121 ELCPSAFK 128
+CP A K
Sbjct: 328 NICPFASK 335
>gi|328771332|gb|EGF81372.1| hypothetical protein BATDEDRAFT_10576 [Batrachochytrium
dendrobatidis JAM81]
Length = 266
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 83/124 (66%), Gaps = 6/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MK+ A I T+Y+ DIP +L L+ LPGIGPKMAHL M WN GI VDTHVHRI +R
Sbjct: 112 MKQTAEILKTQYNSDIPDTLSGLMSLPGIGPKMAHLAMQEAWNQTVGIGVDTHVHRISHR 171
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GW + +PE +R+ L+ WLP++ W IN LLVGFGQT+C P+ P+C C VS
Sbjct: 172 IGWT------KYLKTPEHSRKELEEWLPRQYWNEINKLLVGFGQTLCLPVGPKCTECPVS 225
Query: 121 ELCP 124
LCP
Sbjct: 226 HLCP 229
>gi|157864920|ref|XP_001681168.1| putative endonuclease III [Leishmania major strain Friedlin]
gi|68124463|emb|CAJ02303.1| putative endonuclease III [Leishmania major strain Friedlin]
Length = 257
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 86/129 (66%), Gaps = 5/129 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I + YDG +P EL+ LPG+GPKMA+L + V GI VDTHVHRI R
Sbjct: 109 IKEVAAILMKNYDGKVPREYAELIALPGVGPKMANLFFQDADHRVIGIGVDTHVHRISQR 168
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +PE TR+ L+ WLP+E W IN L+VG GQT+CTP+RP+C +C +S
Sbjct: 169 YRWVPST-----VKTPEDTRKALESWLPREHWGTINSLMVGLGQTVCTPLRPKCDICELS 223
Query: 121 ELCPSAFKD 129
++CP+AFK+
Sbjct: 224 DICPNAFKE 232
>gi|347967756|ref|XP_312566.5| AGAP002388-PA [Anopheles gambiae str. PEST]
gi|333468315|gb|EAA08063.5| AGAP002388-PA [Anopheles gambiae str. PEST]
Length = 461
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/125 (54%), Positives = 87/125 (69%), Gaps = 5/125 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+++ I + +Y GDIP+S++ LL LPG+G KMAHL M WN V GI VDTHVHRI N
Sbjct: 320 IKEMSQILIDQYGGDIPNSIEGLLKLPGVGTKMAHLCMRSAWNIVTGIGVDTHVHRIANW 379
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV ++T +PE TR+ L+ WLP E W +N LLVGFGQTICTP PRC CS +
Sbjct: 380 LKWVP-----KETKNPENTRQALEKWLPYELWDEVNHLLVGFGQTICTPRFPRCNDCSNA 434
Query: 121 ELCPS 125
+CP+
Sbjct: 435 PICPA 439
>gi|328867595|gb|EGG15977.1| putative endonuclease III [Dictyostelium fasciculatum]
Length = 405
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 85/132 (64%), Gaps = 7/132 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I I KY GDIP + ELL LPGIG KM +L++ V W +GI +D H+HRI NR
Sbjct: 255 LKRICIIMRDKYKGDIPPNFKELLELPGIGQKMTNLIVQVAWGRTEGIAIDVHMHRIANR 314
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV T +P++T L+ WLP E W IN LLVGFGQT CTP+RP+C C V+
Sbjct: 315 LGWVH-------TETPDKTEIALKEWLPFERWDGINKLLVGFGQTTCTPLRPKCQNCKVN 367
Query: 121 ELCPSAFKDSSS 132
LCP+ ++ S
Sbjct: 368 HLCPTGIENMKS 379
>gi|452848386|gb|EME50318.1| hypothetical protein DOTSEDRAFT_68994 [Dothistroma septosporum
NZE10]
Length = 420
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/132 (53%), Positives = 87/132 (65%), Gaps = 9/132 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K +A I K+DGDIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 219 LKSVAVILREKFDGDIPDTIEGLISLPGVGPKMAYLCMSAAWGRDEGIGVDVHVHRITNL 278
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
W KTS+PEQTR L+ WLPKE+W IN LLVGFGQTIC P+ RC C S
Sbjct: 279 WKW-------HKTSTPEQTRAELESWLPKEKWHDINHLLVGFGQTICLPVGRRCDECELS 331
Query: 119 VSELCPSAFKDS 130
V +LCPSA S
Sbjct: 332 VQKLCPSAVAGS 343
>gi|324511601|gb|ADY44825.1| Endonuclease III-like protein 1 [Ascaris suum]
Length = 266
Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 84/125 (67%), Gaps = 7/125 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I KY GDIP+++++L LPG+GPKMAHL M W ++G+ VDTHVHRI NR
Sbjct: 142 LKKVADILSNKYGGDIPNTVEDLCSLPGVGPKMAHLAMQHAWGRIEGLGVDTHVHRIANR 201
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT +PEQTR L+ +PKE W +N LLVGFGQ C P P+C C
Sbjct: 202 LGWV-------KTKTPEQTRVALEELIPKERWAGLNKLLVGFGQQTCLPTLPKCSDCLNK 254
Query: 121 ELCPS 125
++CP+
Sbjct: 255 DICPA 259
>gi|387015722|gb|AFJ49980.1| Endonuclease III-like protein 1-like [Crotalus adamanteus]
Length = 282
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 83/127 (65%), Gaps = 5/127 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ I Y GDIP ++ EL+ LPG+GPKMAHLVM++ W GI VDTHVHRICNR
Sbjct: 159 VQQTTAILKRDYAGDIPQTVAELVKLPGVGPKMAHLVMDIAWKKASGIGVDTHVHRICNR 218
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K++T PE+TR+ L+ WLP+ W IN LLVGFGQ IC P+RP C C
Sbjct: 219 LKWA-----KKETKLPEETRQALEEWLPRTLWSEINWLLVGFGQQICLPVRPHCSECLNR 273
Query: 121 ELCPSAF 127
+CP +
Sbjct: 274 NICPGSM 280
>gi|170063194|ref|XP_001866998.1| endonuclease iii [Culex quinquefasciatus]
gi|167880905|gb|EDS44288.1| endonuclease iii [Culex quinquefasciatus]
Length = 361
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ + + L+ YDGDIP +++ L+ LPG+G KMAHL M WN V GI VDTHVHRI N
Sbjct: 220 IRQTSALLLSTYDGDIPDTIEGLMKLPGVGAKMAHLCMGAAWNIVTGIGVDTHVHRISNW 279
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV ++T +PE+TR +L+ WLP E W +N LLVGFGQTICT PRC C +
Sbjct: 280 LGWVP-----RETRTPEETRLLLERWLPFELWEEVNHLLVGFGQTICTSTYPRCNECGNA 334
Query: 121 ELCPSAFK 128
E+CP+ K
Sbjct: 335 EICPARGK 342
>gi|451845583|gb|EMD58895.1| hypothetical protein COCSADRAFT_203977 [Cochliobolus sativus
ND90Pr]
Length = 419
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I K++ DIP +++ L+ LPG+GPKMAHL M+ W +GI VD HVHRI N
Sbjct: 235 IKQTAEILRDKWNSDIPDTIEGLVSLPGVGPKMAHLTMSAAWGRTEGIGVDVHVHRITNL 294
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT PEQTR L+ WLPKE+W IN LLVGFGQTIC P+ +CG C ++
Sbjct: 295 WGW-------HKTQQPEQTRAALESWLPKEKWHDINNLLVGFGQTICLPVGRKCGDCKLA 347
Query: 121 E--LCPSAF 127
+ LCPSA
Sbjct: 348 DRGLCPSAV 356
>gi|451998140|gb|EMD90605.1| hypothetical protein COCHEDRAFT_1179590 [Cochliobolus
heterostrophus C5]
Length = 420
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 85/129 (65%), Gaps = 9/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I K++ DIP +++ L+ LPG+GPKMAHL M+ W +GI VD HVHRI N
Sbjct: 235 IKQTAEILRDKWNSDIPDTIEGLVSLPGVGPKMAHLTMSAAWGRTEGIGVDVHVHRITNL 294
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT PEQTR L+ WLPKE+W IN LLVGFGQTIC P+ +CG C ++
Sbjct: 295 WGW-------HKTQQPEQTRAALESWLPKEKWHDINNLLVGFGQTICLPVGRKCGDCKLA 347
Query: 121 E--LCPSAF 127
+ LCPSA
Sbjct: 348 DRGLCPSAV 356
>gi|170035458|ref|XP_001845586.1| endonuclease iii [Culex quinquefasciatus]
gi|167877498|gb|EDS40881.1| endonuclease iii [Culex quinquefasciatus]
Length = 363
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ + + L+ YDGDIP +++ L+ LPG+G KMAHL M WN V GI VDTHVHRI N
Sbjct: 222 IRQTSALLLSTYDGDIPDTIEGLMKLPGVGAKMAHLCMGAAWNIVTGIGVDTHVHRISNW 281
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV ++T +PE+TR +L+ WLP E W +N LLVGFGQTICT PRC C +
Sbjct: 282 LGWVP-----RETRTPEETRLLLERWLPFELWEEVNHLLVGFGQTICTSTYPRCNECGNA 336
Query: 121 ELCPSAFK 128
E+CP+ K
Sbjct: 337 EICPARGK 344
>gi|56753569|gb|AAW24987.1| SJCHGC01733 protein [Schistosoma japonicum]
Length = 269
Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/128 (53%), Positives = 81/128 (63%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK I KYD DIP ++ EL LPG+GPKMA+L M W V GI VDTHVHRI NR
Sbjct: 131 IKKTCEIIKQKYDSDIPKTVKELCTLPGVGPKMAYLAMKCAWKKVTGIGVDTHVHRITNR 190
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W +P T +PE+TR L+ WLP+E W IN LLVGFGQ IC P+ P C C
Sbjct: 191 LKWSKRP-----TKTPEETRMALEEWLPREYWDEINLLLVGFGQQICRPVNPNCMGCLNR 245
Query: 121 ELCPSAFK 128
+CPSA K
Sbjct: 246 SICPSASK 253
>gi|91088451|ref|XP_968911.1| PREDICTED: similar to predicted protein [Tribolium castaneum]
Length = 283
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 88/129 (68%), Gaps = 7/129 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I +Y+GDIP ++++L LPG+GPKMA+L M WN V GI VDTHVHRI NR
Sbjct: 156 IKKASEILKNEYNGDIPRTVEDLCKLPGVGPKMANLCMKTAWNEVTGIGVDTHVHRISNR 215
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GWV KT +PE+T++ L+ WLP++ W I LLVGFGQ C P++P+CG C +
Sbjct: 216 IGWV-------KTKTPEETKKSLERWLPRDLWDEIGALLVGFGQQTCKPVKPQCGTCLNN 268
Query: 121 ELCPSAFKD 129
+CP K+
Sbjct: 269 SVCPFGTKE 277
>gi|270011744|gb|EFA08192.1| hypothetical protein TcasGA2_TC005819 [Tribolium castaneum]
Length = 266
Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 88/129 (68%), Gaps = 7/129 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I +Y+GDIP ++++L LPG+GPKMA+L M WN V GI VDTHVHRI NR
Sbjct: 139 IKKASEILKNEYNGDIPRTVEDLCKLPGVGPKMANLCMKTAWNEVTGIGVDTHVHRISNR 198
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GWV KT +PE+T++ L+ WLP++ W I LLVGFGQ C P++P+CG C +
Sbjct: 199 IGWV-------KTKTPEETKKSLERWLPRDLWDEIGALLVGFGQQTCKPVKPQCGTCLNN 251
Query: 121 ELCPSAFKD 129
+CP K+
Sbjct: 252 SVCPFGTKE 260
>gi|169853989|ref|XP_001833672.1| DNA-(apurinic or apyrimidinic site) lyase [Coprinopsis cinerea
okayama7#130]
gi|116505322|gb|EAU88217.1| DNA-(apurinic or apyrimidinic site) lyase [Coprinopsis cinerea
okayama7#130]
Length = 450
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 87/135 (64%), Gaps = 11/135 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A +++GD+P ++DEL LPG+GPKMA L + V WN GI VD HVHRI NR
Sbjct: 255 LKQTAAKLQEEFEGDVPKTVDELCSLPGVGPKMAFLCLQVAWNLNLGIGVDVHVHRISNR 314
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW +P T PE+TR LQ WLP E INPLLVGFGQ +CTP+ P+C C++S
Sbjct: 315 LGWHRKP-----TKDPEETRLNLQSWLPSELHQEINPLLVGFGQVVCTPVNPKCDQCTLS 369
Query: 121 ------ELCPSAFKD 129
LCPSA K+
Sbjct: 370 GSSTSKALCPSARKN 384
>gi|73959522|ref|XP_853674.1| PREDICTED: endonuclease III-like protein 1 [Canis lupus familiaris]
Length = 312
Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI N
Sbjct: 189 IKQTSAILQQRYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIAN- 247
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+ T+SPE+TR L+ WLP+E W IN LLVGFGQ C P+RPRCG C
Sbjct: 248 ----RLRWTRTTTTSPEKTRAALEEWLPRELWGEINGLLVGFGQQTCLPVRPRCGACLNR 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 SLCPAA 309
>gi|291226292|ref|XP_002733128.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 318
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 7/140 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + + ++YD DIPS++ EL LPG+GPKMA+L MN+ W+ GI VDTHVHRI NR
Sbjct: 186 IKKTSTLLESQYDNDIPSTISELCQLPGVGPKMAYLCMNIAWHQTTGIGVDTHVHRISNR 245
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV K T +PE TR++LQ WLP+ W+ IN LLVGFGQ IC + P+C C +
Sbjct: 246 LKWV-----KSTTKTPEDTRKILQEWLPRSLWIEINWLLVGFGQQICLSVSPKCQQCLNN 300
Query: 121 ELCPSAFKDSSSPSSKSRKS 140
C F ++ S K +++
Sbjct: 301 HTC--LFGKANLQSKKKKRN 318
>gi|348684342|gb|EGZ24157.1| hypothetical protein PHYSODRAFT_478985 [Phytophthora sojae]
Length = 278
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 85/128 (66%), Gaps = 7/128 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I T++ GDIP SLDEL LPGIGPK+ ++ + W +V GI VDTHVHR+ R
Sbjct: 142 LKRVAAILRTQFHGDIPRSLDELQQLPGIGPKIGRVITLLAWGHVDGIVVDTHVHRLAQR 201
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW S TS+PE TR L+ W+P+E W ++ +VGFGQT+CT P C C ++
Sbjct: 202 LGWAS-------TSTPEDTRRELEDWIPREHWGKLSLAVVGFGQTVCTAKHPSCSSCPLA 254
Query: 121 ELCPSAFK 128
CPSAFK
Sbjct: 255 PKCPSAFK 262
>gi|398411994|ref|XP_003857329.1| hypothetical protein MYCGRDRAFT_34626 [Zymoseptoria tritici IPO323]
gi|339477214|gb|EGP92305.1| hypothetical protein MYCGRDRAFT_34626 [Zymoseptoria tritici IPO323]
Length = 407
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 90/138 (65%), Gaps = 11/138 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + K++GDIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 221 IKATAELLRDKWNGDIPETIEGLVSLPGVGPKMAYLTMSSAWGRDEGIGVDVHVHRISNL 280
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW KT++PEQTR L+ WLPK+ W IN LLVGFGQ IC P+ RCG C ++
Sbjct: 281 LGW-------HKTNTPEQTRAALESWLPKDRWHSINHLLVGFGQMICLPVGRRCGDCDLN 333
Query: 121 --ELCPSAFKDSSSPSSK 136
LCPSA SSSP K
Sbjct: 334 THNLCPSAV--SSSPRKK 349
>gi|332373842|gb|AEE62062.1| unknown [Dendroctonus ponderosae]
Length = 223
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 86/126 (68%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I +Y+ DIP++++++L LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 102 IKKTSEILKNQYNCDIPNTIEDMLKLPGVGPKMAHLCMKVAWGEVTGIGVDTHVHRIANR 161
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GWV KT +PEQT + L+ WLP + W +N LLVGFGQ IC PI P+C C
Sbjct: 162 MGWV-------KTKTPEQTEKALESWLPFDLWNEVNHLLVGFGQQICRPINPQCSSCLNK 214
Query: 121 ELCPSA 126
+CP++
Sbjct: 215 TICPAS 220
>gi|405957860|gb|EKC24038.1| Endonuclease III-like protein 1 [Crassostrea gigas]
Length = 372
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 83/124 (66%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +Y+GDIP ++++L LPG+GPKMA+L M WN + GI VDTHVHRI NR
Sbjct: 88 IKRTSKILQEEYNGDIPDTVEKLCKLPGVGPKMAYLAMKCAWNQIVGIGVDTHVHRISNR 147
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV +P T PE TR+ LQ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 148 LRWVKKP-----TKQPEDTRKELQDWLPREYWRDINHLLVGFGQQTCLPVGPRCYECLNK 202
Query: 121 ELCP 124
E+CP
Sbjct: 203 EICP 206
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 81/122 (66%), Gaps = 5/122 (4%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+ + I +Y+GDIP ++++L LPG+GPKMA+L M WN + GI VDTHVHRI NRL
Sbjct: 232 RTSKILQEEYNGDIPDTVEKLCKLPGVGPKMAYLAMKCAWNQIVGIGVDTHVHRISNRLR 291
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV +P T PE TR+ LQ WLP+E W IN LLVGFGQ C P+ PRC C E+
Sbjct: 292 WVKKP-----TKQPEDTRKELQDWLPREYWRDINHLLVGFGQQTCLPVGPRCYECLNKEI 346
Query: 123 CP 124
CP
Sbjct: 347 CP 348
>gi|452987710|gb|EME87465.1| hypothetical protein MYCFIDRAFT_26406 [Pseudocercospora fijiensis
CIRAD86]
Length = 413
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 89/141 (63%), Gaps = 11/141 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I K++GDIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 225 IKQVAEILRDKFNGDIPDTIEGLVSLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 284
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS-- 118
GW KTS+PEQTRE L+ WLPKE+W IN LLVGFGQT C P+ C C
Sbjct: 285 WGW-------HKTSTPEQTREALESWLPKEKWHDINHLLVGFGQTFCPPVGRDCSQCELG 337
Query: 119 VSELCPSAFKDSSSPSSKSRK 139
V LCP + + SP K K
Sbjct: 338 VKRLCPG--RTAGSPKKKRVK 356
>gi|401416385|ref|XP_003872687.1| putative endonuclease III [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322488912|emb|CBZ24161.1| putative endonuclease III [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 258
Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 88/138 (63%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I + YDG +P E++ LPG+GPKMA+L + V GI VDTHVHRI R
Sbjct: 109 IKEVAAILMKDYDGKVPREYAEVIALPGVGPKMANLFFQDADHRVIGIGVDTHVHRISQR 168
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +PE TR+ L+ WLP E W IN L+VG GQT+CTP+RP+C +C +S
Sbjct: 169 YRWVPST-----VKTPEDTRKALESWLPLEHWGTINSLMVGLGQTVCTPLRPKCDICELS 223
Query: 121 ELCPSAFKDSSSPSSKSR 138
+CP+AFK++ +++
Sbjct: 224 GICPNAFKETQQKRLRAK 241
>gi|449682785|ref|XP_002164144.2| PREDICTED: endonuclease III-like protein 1-like [Hydra
magnipapillata]
Length = 320
Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 83/129 (64%), Gaps = 7/129 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K IC K++ DIP+SL LL LPG+GPKMAH+ MN W V GI VDTHVHRI NR
Sbjct: 197 IKNATAICHDKFNNDIPNSLQGLLSLPGVGPKMAHICMNAAWGVVTGIGVDTHVHRIANR 256
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV+ T PE+TR L+ LP+ EW IN LLVGFGQ C P+ P+C C
Sbjct: 257 LKWVN-------TKKPEETRNCLEALLPRCEWDDINILLVGFGQQTCLPVNPKCISCLNY 309
Query: 121 ELCPSAFKD 129
++CPS+ K+
Sbjct: 310 DICPSSTKN 318
>gi|256071646|ref|XP_002572150.1| endonuclease III [Schistosoma mansoni]
gi|353229188|emb|CCD75359.1| putative endonuclease III [Schistosoma mansoni]
Length = 260
Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 81/128 (63%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK I KY+ DIP +++EL LPG+GPKMA+L M W V GI VDTHVHRI NR
Sbjct: 130 IKKTCEILKEKYNSDIPETVEELCTLPGVGPKMAYLAMQCAWKKVTGIGVDTHVHRIVNR 189
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W +P T +PE+TR ++ W P+E W IN LLVGFGQ IC P+ P C C
Sbjct: 190 LKWCKKP-----TKTPEETRLAIEEWFPREHWDEINWLLVGFGQQICRPVNPNCKECLNL 244
Query: 121 ELCPSAFK 128
+CPSA K
Sbjct: 245 SICPSASK 252
>gi|407927433|gb|EKG20326.1| hypothetical protein MPH_02340 [Macrophomina phaseolina MS6]
Length = 278
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + ++DGDIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 91 IKQTAELLRDRFDGDIPDTIEGLVSLPGVGPKMAYLCMSAAWGRDEGIGVDVHVHRITNL 150
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE+TR L+ WLPK++W IN LLVGFGQTIC P+ +CG C+++
Sbjct: 151 WGW-------HKTRTPEETRAALEAWLPKDKWHAINHLLVGFGQTICLPVGRKCGECTLA 203
Query: 121 E--LCPSAF 127
E LCP A
Sbjct: 204 EKGLCPGAV 212
>gi|395323833|gb|EJF56288.1| DNA glycosylase [Dichomitus squalens LYAD-421 SS1]
Length = 433
Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 85/129 (65%), Gaps = 6/129 (4%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ GD+P ++DEL LPG+GPKMA L + V W GI VD HVHRI NRLGW P
Sbjct: 251 EFGGDVPKTVDELCSLPGVGPKMAFLALQVAWKVNAGIGVDVHVHRITNRLGWHKSP--- 307
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE-LCPSAFKD 129
T +PE+TR LQ WLP E IN LLVGFGQTIC P+ P+C C +S+ LCPSA K
Sbjct: 308 --TKTPEETRLNLQSWLPVELHPDINHLLVGFGQTICAPVGPKCDQCELSDGLCPSARKV 365
Query: 130 SSSPSSKSR 138
+ SSK+R
Sbjct: 366 VKASSSKTR 374
>gi|443717727|gb|ELU08655.1| hypothetical protein CAPTEDRAFT_25579, partial [Capitella teleta]
Length = 231
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 82/124 (66%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + I + + DIP++++ L LPG+GPKMAHLVM W + GI VDTHVHRICNR
Sbjct: 105 IKKTSKILKSDFSMDIPNTVEGLCSLPGVGPKMAHLVMKSAWGEISGIGVDTHVHRICNR 164
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV KT PE+TR L+ WLP++ WV IN LLVGFGQTIC P+ P C C
Sbjct: 165 LDWV-------KTKQPEETRVELEEWLPRDLWVDINALLVGFGQTICRPVGPDCFSCLNK 217
Query: 121 ELCP 124
+CP
Sbjct: 218 NICP 221
>gi|242017392|ref|XP_002429173.1| endonuclease III, putative [Pediculus humanus corporis]
gi|212514051|gb|EEB16435.1| endonuclease III, putative [Pediculus humanus corporis]
Length = 292
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 82/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + K+DGDIP++++ L LPG+G KMAH+ M W+ + GI VDTHVHRI NR
Sbjct: 168 LKQTCQVLKEKFDGDIPNTVELLCSLPGVGLKMAHICMKTAWDVISGIGVDTHVHRIANR 227
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GWV +P T +PE+TR L+ WLPKE W IN LLVGFGQ IC P +P C C
Sbjct: 228 IGWVHKP-----TKTPEETRISLESWLPKELWEEINNLLVGFGQQICKPTKPLCNSCKNQ 282
Query: 121 ELCPSA 126
CP A
Sbjct: 283 PFCPYA 288
>gi|388582291|gb|EIM22596.1| DNA glycosylase [Wallemia sebi CBS 633.66]
Length = 331
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 82/130 (63%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A + ++GD+P +DEL LPG+GPKM L + WN GI VD HVHRI NR
Sbjct: 168 LKKAAVMLRDNFEGDVPKDIDELCSLPGVGPKMGFLALQAAWNQNDGIGVDVHVHRITNR 227
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW P T PEQTR L+ WLPKE +N LLVGFGQTIC P+ P+C C +S
Sbjct: 228 LGWHQPP-----TKQPEQTRLNLESWLPKELHRDVNKLLVGFGQTICLPVGPKCEDCKLS 282
Query: 121 --ELCPSAFK 128
+LCPSA K
Sbjct: 283 AEDLCPSARK 292
>gi|392596315|gb|EIW85638.1| DNA glycosylase [Coniophora puteana RWD-64-598 SS2]
Length = 364
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 92/145 (63%), Gaps = 7/145 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A +D ++P ++DEL LPG+GPKMA L + V W GI VD HVHRI NR
Sbjct: 217 IKQTAQRLKDDFDSEVPKTVDELCSLPGVGPKMAFLALQVAWKLNVGIGVDVHVHRITNR 276
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW P R+ PEQTR LQ WLP E IN +LVGFGQT+C P++PRC MC +S
Sbjct: 277 LGWHKPPTRE-----PEQTRLNLQSWLPIELHPDINLMLVGFGQTVCLPVKPRCEMCKLS 331
Query: 121 --ELCPSAFKDSSSPSSKSRKSAQK 143
+LCPSA SSPS R ++++
Sbjct: 332 TMDLCPSAKLPKSSPSKPRRVTSEE 356
>gi|426200726|gb|EKV50650.1| hypothetical protein AGABI2DRAFT_63644 [Agaricus bisporus var.
bisporus H97]
Length = 370
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 85/130 (65%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + +D D+P ++DEL LPG+GPKMA L + V W+ GI VD HVHRI NR
Sbjct: 181 IKRAAQMLHDDFDSDVPKTVDELCSLPGVGPKMAFLALQVAWDLNHGIGVDVHVHRITNR 240
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW +P T +PE+TR LQ WLP E IN +LVGFGQ IC P+ PRC MC++S
Sbjct: 241 LGWHQKP-----TKNPEETRLNLQSWLPTEFHREINHMLVGFGQVICLPVGPRCDMCNLS 295
Query: 121 E--LCPSAFK 128
LCPSA K
Sbjct: 296 TNGLCPSAQK 305
>gi|157103485|ref|XP_001648002.1| endonuclease iii [Aedes aegypti]
gi|108880533|gb|EAT44758.1| AAEL003906-PA [Aedes aegypti]
Length = 396
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/128 (53%), Positives = 82/128 (64%), Gaps = 5/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I L YDGDIP ++D LL LPG+G KMAHL M WN V GI VDTHVHRICN
Sbjct: 255 IKQSSQILLDSYDGDIPDTIDGLLKLPGVGKKMAHLCMRSAWNVVTGIGVDTHVHRICNW 314
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV ++T +PE TR L+ WLP E W +N LLVGFGQTIC P C C +
Sbjct: 315 LQWVP-----KQTKTPEDTRVALEKWLPFELWEEVNQLLVGFGQTICPATNPYCNECLNA 369
Query: 121 ELCPSAFK 128
+CP+ K
Sbjct: 370 TICPAKGK 377
>gi|403350158|gb|EJY74527.1| hypothetical protein OXYTRI_04215 [Oxytricha trifallax]
Length = 372
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 90/138 (65%), Gaps = 7/138 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A + Y G +PS D+L+ LPG+GPKMAHL++ ++ GI VDTHVHRI NR
Sbjct: 120 LKKAARQIIEDYKGIVPSDYDKLIALPGVGPKMAHLLLQNCFDKTVGISVDTHVHRIANR 179
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV ++T +P +T + LQ WLP+++W IN +LVGFGQ IC PI PRC C
Sbjct: 180 LKWVP-----KQTKTPGETAKALQEWLPQDKWEKINWMLVGFGQMICKPIGPRCYECKAR 234
Query: 121 ELCPSAFKDSSSPSSKSR 138
+LCP F+ S P +KS+
Sbjct: 235 DLCP--FEPKSKPPTKSK 250
>gi|321475198|gb|EFX86161.1| hypothetical protein DAPPUDRAFT_193197 [Daphnia pulex]
Length = 306
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 82/124 (66%), Gaps = 5/124 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I +Y+ DIP +++EL LPG+G KMA L +N+GW GI VDTHVHRI NR
Sbjct: 180 IKRTAVILAAQYNNDIPQTVEELCKLPGVGQKMAVLTVNIGWKKTIGIGVDTHVHRIANR 239
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW +P T +PE T++ L+ WLP+ W +N LLVGFGQ CTPI+P+C C
Sbjct: 240 LGWTRRP-----TKTPENTQKELEDWLPRSLWDEVNILLVGFGQQRCTPIKPQCSTCLNK 294
Query: 121 ELCP 124
LCP
Sbjct: 295 NLCP 298
>gi|296415754|ref|XP_002837551.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633423|emb|CAZ81742.1| unnamed protein product [Tuber melanosporum]
Length = 459
Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats.
Identities = 67/130 (51%), Positives = 87/130 (66%), Gaps = 8/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I K+ GDIP + + L LPG+GPKMAHL ++ W+ +GI VD HVHRICN
Sbjct: 261 IKKAAVIIRDKHGGDIPDTFEGLTALPGVGPKMAHLCLSAAWDRTEGIGVDVHVHRICNL 320
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV KT++PE TRE LQ WLP+++W IN LLVGFGQTIC P +CG C++S
Sbjct: 321 WDWV-------KTTTPEGTREALQAWLPRDKWREINFLLVGFGQTICLPRGRKCGECALS 373
Query: 121 E-LCPSAFKD 129
LC +A+ +
Sbjct: 374 SGLCGAAYME 383
>gi|154332722|ref|XP_001562623.1| putative endonuclease III [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059626|emb|CAM41746.1| putative endonuclease III [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 259
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 90/143 (62%), Gaps = 5/143 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I + Y G +P +EL+ LPG+GPKMA+L + GI VDTHVHRI R
Sbjct: 109 IKEVAAILIKDYGGKVPREYEELIALPGVGPKMANLFFQDADHRTVGIGVDTHVHRISQR 168
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +PE TR+ L+ WLP++ W IN L+VG GQT+CTP+ P+CG+C +S
Sbjct: 169 YRWVPS-----TVKTPEDTRKALESWLPQKHWGTINSLMVGLGQTVCTPLYPKCGICELS 223
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
++CP+AFK+ +++ ++
Sbjct: 224 DICPNAFKEVQQKGLRTKAPTER 246
>gi|409082857|gb|EKM83215.1| hypothetical protein AGABI1DRAFT_69456 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 383
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/130 (51%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + +D D+P ++DEL LPG+GPKMA L + V W+ GI VD HVHRI NR
Sbjct: 194 IKRATQMLHDDFDSDVPKTVDELCSLPGVGPKMAFLALQVAWDLNHGIGVDVHVHRITNR 253
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW +P T +PE+TR LQ WLP E IN +LVGFGQ IC P+ PRC MC +S
Sbjct: 254 LGWHQKP-----TKNPEETRLNLQSWLPTEFHREINHMLVGFGQVICLPVGPRCDMCDLS 308
Query: 121 E--LCPSAFK 128
LCPSA K
Sbjct: 309 TKGLCPSAQK 318
>gi|407406883|gb|EKF30968.1| endonuclease III, putative [Trypanosoma cruzi marinkellei]
Length = 251
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 86/138 (62%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ L ++ G +P + ++L++LPGIGPKMAHL + V GI VDTHVHRIC R
Sbjct: 109 IKEATDAILKRHQGKVPHAYEDLIVLPGIGPKMAHLFLQEADGVVLGIGVDTHVHRICQR 168
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +PE TR+VL+ WLP++ W IN LLVG GQTICTP P C C S
Sbjct: 169 FLWVPS-----TVKTPEDTRKVLESWLPRKYWNEINGLLVGLGQTICTPRFPHCSECPAS 223
Query: 121 ELCPSAFKDSSSPSSKSR 138
+LCP+AFK++ + R
Sbjct: 224 DLCPNAFKETKRSGKRGR 241
>gi|396486084|ref|XP_003842328.1| similar to TPA: DNA repair protein Ntg1 [Leptosphaeria maculans
JN3]
gi|312218904|emb|CBX98849.1| similar to TPA: DNA repair protein Ntg1 [Leptosphaeria maculans
JN3]
Length = 423
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 86/129 (66%), Gaps = 9/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I K++ DIP +++ L+ LPG+GPKMA+L ++ W +GI VD HVHRI N
Sbjct: 237 IKQTAEILRDKWNSDIPDTVEGLISLPGVGPKMAYLTLSAAWGRDEGIGVDVHVHRITNL 296
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PEQTR L+ WLP+++W IN LLVGFGQTIC P+ +CG C ++
Sbjct: 297 WGW-------HKTQNPEQTRAALESWLPRDKWHDINNLLVGFGQTICLPVGRKCGECKLA 349
Query: 121 E--LCPSAF 127
+ LCPSA
Sbjct: 350 DRGLCPSAV 358
>gi|198413061|ref|XP_002124717.1| PREDICTED: similar to predicted protein, partial [Ciona
intestinalis]
Length = 183
Score = 136 bits (342), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ++ GDIP ++ L+ LPG+GPKMA+L M W V GI VD HVHR+CNR
Sbjct: 63 LKRACIMMKEEFGGDIPKCVESLVKLPGVGPKMAYLTMTCAWGIVVGIGVDVHVHRVCNR 122
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV Q T PEQTR LQ WLP+E W IN LLVGFGQ +C P+ P+C C
Sbjct: 123 LGWV------QGTKQPEQTRLQLQQWLPRENWREINSLLVGFGQQVCLPVAPKCQECLNK 176
Query: 121 ELCPSA 126
+CPSA
Sbjct: 177 NICPSA 182
>gi|169614824|ref|XP_001800828.1| hypothetical protein SNOG_10562 [Phaeosphaeria nodorum SN15]
gi|160702827|gb|EAT81956.2| hypothetical protein SNOG_10562 [Phaeosphaeria nodorum SN15]
Length = 1058
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/128 (50%), Positives = 85/128 (66%), Gaps = 9/128 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I K+DG+IP S++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 223 IKATAEILRDKFDGEIPDSIEGLVSLPGVGPKMAYLTMSAAWGKDEGIGVDVHVHRITNL 282
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PEQTR L+ WLP+++W IN LLVG GQTIC P+ +CG C ++
Sbjct: 283 WGW-------NKTQTPEQTRAALESWLPRDKWHDINNLLVGHGQTICLPVGRKCGECKLA 335
Query: 121 E--LCPSA 126
+ LCPSA
Sbjct: 336 DRGLCPSA 343
>gi|171692077|ref|XP_001910963.1| hypothetical protein [Podospora anserina S mat+]
gi|170945987|emb|CAP72788.1| unnamed protein product [Podospora anserina S mat+]
Length = 1171
Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats.
Identities = 68/145 (46%), Positives = 92/145 (63%), Gaps = 8/145 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRICNR 60
+ A I K++GDIP +++ L+ LPG+GPKMAHL M+ GWN V+GI VD HVHRI N
Sbjct: 285 QTAQILKDKFNGDIPPTIEGLVSLPGVGPKMAHLCMSAENGWNRVEGIGVDVHVHRITNY 344
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW ++T +PE+TR LQ WLPK++W IN LLVG GQ++C P+ RCG C V
Sbjct: 345 WGW----NGPKETKTPEETRMALQSWLPKDKWKEINWLLVGLGQSVCLPVGRRCGDCEVG 400
Query: 120 -SELCPSAFKDSSSPSSKSRKSAQK 143
LC +A + + K R+ +K
Sbjct: 401 LKGLCKAADRKKVNEGKKRREGVRK 425
>gi|430813977|emb|CCJ28721.1| unnamed protein product [Pneumocystis jirovecii]
Length = 300
Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 87/134 (64%), Gaps = 9/134 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I Y+GDIPS++ +L+ LPG+G KMAHL ++ WN +GI VD HVHRI N
Sbjct: 139 IKETVKILERDYNGDIPSTIKDLVALPGLGFKMAHLCLSCAWNRTEGIGVDVHVHRISNL 198
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV+ T +PEQTR L+ WLP++ W IN L VGFGQTIC P + +C C++S
Sbjct: 199 LGWVN-------TKTPEQTRLKLESWLPRKYWKEINHLFVGFGQTICLPRKRKCSECTLS 251
Query: 121 --ELCPSAFKDSSS 132
LCPS+ K +
Sbjct: 252 FLNLCPSSIKKDDT 265
>gi|403223295|dbj|BAM41426.1| endonuclease III [Theileria orientalis strain Shintoku]
Length = 426
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 83/129 (64%), Gaps = 7/129 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I KY G +PS+ +L LPGIGPKMA+L+ + +N V GI VD HVHRI NR
Sbjct: 298 IKKVAEILKEKYGGKVPSNKKDLESLPGIGPKMANLIQQIAFNIVDGIAVDLHVHRITNR 357
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT +PE+TR L+ LPK W +NPLLVGFGQT CT P C C V+
Sbjct: 358 LGWV-------KTKTPEETRVKLEELLPKSLWSEVNPLLVGFGQTFCTAAGPGCPTCPVN 410
Query: 121 ELCPSAFKD 129
+ CP+ +
Sbjct: 411 KWCPTGISN 419
>gi|402225782|gb|EJU05843.1| DNA glycosylase [Dacryopinax sp. DJM-731 SS1]
Length = 321
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 83/120 (69%), Gaps = 7/120 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DGD+P ++DEL LPG+GPKMA L + W+ GI VDTHVHRI NRLGW P
Sbjct: 123 EFDGDVPKTVDELCSLPGVGPKMAFLCLQNAWDINVGIGVDTHVHRITNRLGWHKPP--- 179
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE--LCPSAFK 128
T++PEQTR LQ WLP+E IN +LVGFGQ +C P+ PRC +C+++E LCPS K
Sbjct: 180 --TTTPEQTRLNLQSWLPREYHAEINHMLVGFGQALCFPVAPRCDLCALAEKKLCPSRSK 237
>gi|320169582|gb|EFW46481.1| endonuclease III-like protein 1 [Capsaspora owczarzaki ATCC 30864]
Length = 412
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 5/131 (3%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ GDIPS+++ L+ L G+GPKMAH+ M+V W + G+ VDTHVHRI NRL WVS +
Sbjct: 264 FHGDIPSTIEGLVSLKGVGPKMAHITMDVAWQQMVGLGVDTHVHRIANRLKWVS-----K 318
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
+T +PE TR+ LQ W+P+E W +N LLVGFGQTIC P+ PRC C C A + +
Sbjct: 319 ETKTPEDTRKALQEWMPREYWPGLNVLLVGFGQTICRPVNPRCWDCLNLHTCAFARRPET 378
Query: 132 SPSSKSRKSAQ 142
K + Q
Sbjct: 379 RARIKKHRQEQ 389
>gi|407846292|gb|EKG02508.1| endonuclease III, putative [Trypanosoma cruzi]
Length = 251
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 84/138 (60%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ L ++ G +P S ++L+ LPGIGPKMAHL + V GI VDTHVHRI R
Sbjct: 109 IKEATDAILKRHQGRVPHSYEDLIALPGIGPKMAHLFLQEADGVVLGIGVDTHVHRISQR 168
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +PE TR+ L+ WLP++ W IN LLVG GQTICTP PRC C S
Sbjct: 169 FLWVPS-----TVKTPEDTRKALESWLPRKYWGEINGLLVGLGQTICTPRLPRCSECPAS 223
Query: 121 ELCPSAFKDSSSPSSKSR 138
+LCP+AFK++ + R
Sbjct: 224 DLCPNAFKEAKRSGKRGR 241
>gi|71409393|ref|XP_807044.1| endonuclease III [Trypanosoma cruzi strain CL Brener]
gi|70870956|gb|EAN85193.1| endonuclease III, putative [Trypanosoma cruzi]
Length = 251
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 84/138 (60%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ L ++ G +P S ++L+ LPGIGPKMAHL + V GI VDTHVHRI R
Sbjct: 109 IKEATDAILKRHQGRVPHSYEDLIALPGIGPKMAHLFLQEADGVVLGIGVDTHVHRISQR 168
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +PE TR+ L+ WLP++ W IN LLVG GQTICTP PRC C S
Sbjct: 169 FLWVPS-----TVKTPEDTRKALESWLPRKYWGEINGLLVGLGQTICTPRLPRCSECPAS 223
Query: 121 ELCPSAFKDSSSPSSKSR 138
+LCP+AFK++ + R
Sbjct: 224 DLCPNAFKEAKRSGKRGR 241
>gi|71412348|ref|XP_808363.1| endonuclease III [Trypanosoma cruzi strain CL Brener]
gi|70872553|gb|EAN86512.1| endonuclease III, putative [Trypanosoma cruzi]
Length = 251
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 84/138 (60%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ L ++ G +P S ++L+ LPGIGPKMAHL + V GI VDTHVHRI R
Sbjct: 109 IKEATDAILKRHQGRVPHSYEDLIALPGIGPKMAHLFLQEADGVVLGIGVDTHVHRISQR 168
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +PE TR+ L+ WLP++ W IN LLVG GQTICTP PRC C S
Sbjct: 169 FLWVPS-----TVKTPEDTRKALESWLPRKYWGEINGLLVGLGQTICTPRLPRCSECPAS 223
Query: 121 ELCPSAFKDSSSPSSKSR 138
+LCP+AFK++ + R
Sbjct: 224 DLCPNAFKEAKRSGKRGR 241
>gi|399216845|emb|CCF73532.1| unnamed protein product [Babesia microti strain RI]
Length = 392
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 81/124 (65%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKI I K+D IP + ++L LPGIGPKMAHL++ +G+ V+GI VD HV+RI NR
Sbjct: 269 LKKICEILRDKFDKKIPDNFNDLTSLPGIGPKMAHLILQLGFGKVEGIAVDVHVNRIANR 328
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV K++SPE TRE L+ +PK+ W +N LLVGFGQ ICT P C C +
Sbjct: 329 LGWV-------KSNSPEGTREQLEKIIPKKFWAQLNVLLVGFGQMICTKAGPGCSTCLAN 381
Query: 121 ELCP 124
CP
Sbjct: 382 SYCP 385
>gi|170584526|ref|XP_001897050.1| Endonuclease III-like protein 1 [Brugia malayi]
gi|158595585|gb|EDP34128.1| Endonuclease III-like protein 1, putative [Brugia malayi]
Length = 261
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 7/125 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I +YDGDIP++++ L LPG+G KMA+L M WN ++G+ VDTHVHRI NR
Sbjct: 137 IKKVAEILKERYDGDIPNTVEGLCSLPGVGEKMAYLTMCTAWNQLEGLGVDTHVHRISNR 196
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KTS+P+++R L+ +P+E+W +N LLVGFGQ C P+ P+C C
Sbjct: 197 LGWI-------KTSNPKESRMALEALVPREQWQELNKLLVGFGQQTCLPVLPKCSECLNK 249
Query: 121 ELCPS 125
+C +
Sbjct: 250 NICAA 254
>gi|358375279|dbj|GAA91863.1| DNA repair protein [Aspergillus kawachii IFO 4308]
Length = 424
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 84/135 (62%), Gaps = 9/135 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +YD DIPS+ EL+ LPG+GPKMA L M+ W +GI VD HVHRI N
Sbjct: 279 IKAAAIILRDQYDSDIPSTATELMKLPGVGPKMAFLCMSAAWGKHEGIGVDVHVHRITNL 338
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN LLVG GQT+C P+ RCG C +
Sbjct: 339 WGW-------HKTKNPEETRMALESWLPKDKWHEINKLLVGLGQTVCLPVARRCGECDLA 391
Query: 120 -SELCPSAFKDSSSP 133
++LC S + +P
Sbjct: 392 GTKLCKSEIRGLVTP 406
>gi|310796892|gb|EFQ32353.1| HhH-GPD superfamily base excision DNA repair protein [Glomerella
graminicola M1.001]
Length = 469
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/141 (44%), Positives = 89/141 (63%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I ++DGDIP +++ L LPG+GPKMA+L ++ W+ +GI VD HVHRI N
Sbjct: 258 IKAAAEILRDRFDGDIPDTIEGLTSLPGVGPKMAYLCLSAAWDRTEGIGVDVHVHRITNL 317
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS-- 118
GW KT+ PE TR LQ WLPK++W IN LLVGFGQT+C P+ +CG C
Sbjct: 318 WGW-------HKTTQPEATRLALQSWLPKDKWREINWLLVGFGQTLCLPVGRKCGECDLG 370
Query: 119 VSELCPSAFKDSSSPSSKSRK 139
+S +C +A + + ++R+
Sbjct: 371 LSGMCKAAERKKVNEGRRTRE 391
>gi|393906282|gb|EJD74237.1| hypothetical protein LOAG_18420 [Loa loa]
Length = 204
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 86/125 (68%), Gaps = 7/125 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I +YDGDIP++++EL LPG+G KMA+L M W+ ++G+ VDTHVHRI NR
Sbjct: 80 IKKVAKILKERYDGDIPNTIEELCSLPGVGEKMAYLAMCNAWDQMKGLGVDTHVHRISNR 139
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KTS+P+++R L+ +P+EEW +N LLVGFGQ C P+ P+C C
Sbjct: 140 LGWI-------KTSNPKESRIALEALVPREEWQELNKLLVGFGQQTCLPVLPKCSECLNR 192
Query: 121 ELCPS 125
+C +
Sbjct: 193 NICAA 197
>gi|390598493|gb|EIN07891.1| DNA glycosylase [Punctularia strigosozonata HHB-11173 SS5]
Length = 343
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 85/131 (64%), Gaps = 8/131 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A + +++GD+P ++DEL LPG+GPKMA L + V W GI VD HVHRI NR
Sbjct: 167 IKKAAQMLKDEFNGDVPKTVDELCSLPGVGPKMAFLALQVAWKLNSGIGVDVHVHRITNR 226
Query: 61 LGWVSQPGRKQKTSSPEQT-REVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
LGW P T +PE+T R LQ WLPKE IN +LVGFGQT+C PI PRC +C +
Sbjct: 227 LGWHKPP-----TKNPEETSRLNLQSWLPKELHPEINHMLVGFGQTVCLPIGPRCDLCEL 281
Query: 120 --SELCPSAFK 128
LCPSA K
Sbjct: 282 PGKNLCPSARK 292
>gi|119497831|ref|XP_001265673.1| DNA repair protein, putative [Neosartorya fischeri NRRL 181]
gi|119413837|gb|EAW23776.1| DNA repair protein, putative [Neosartorya fischeri NRRL 181]
Length = 432
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIPS+ +EL+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 276 IKAAAEILRDQYNSDIPSTAEELMKLPGVGPKMAYLCMSAAWGKDEGIGVDVHVHRITNL 335
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLP+++W IN LLVG GQT+C P+ RCG C +
Sbjct: 336 WGW-------HKTKTPEETRMALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCGECDLA 388
Query: 120 -SELCPSAFK 128
++LC S +
Sbjct: 389 GTKLCKSEVR 398
>gi|18307439|emb|CAD21502.1| related to DNA repair protein NTG1 [Neurospora crassa]
Length = 835
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/142 (46%), Positives = 91/142 (64%), Gaps = 9/142 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A I +Y+ DIP +++ L+ LPG+GPKMAHL M+ GWN V+GI VD HVHRI
Sbjct: 312 LKQAAEILRDRYNSDIPDTIEGLMSLPGVGPKMAHLCMSADNGWNRVEGIGVDVHVHRIT 371
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW + P T +PE+TR LQ WLP+++W IN LLVGFGQ++C P+ +CG C
Sbjct: 372 NLWGWQNPP-----TKTPEETRLALQSWLPRDKWKEINWLLVGFGQSVCLPVGRKCGDCE 426
Query: 119 VS--ELCPSAFKDSSSPSSKSR 138
+ LC +A + + K R
Sbjct: 427 LGLRGLCKAAERKKVTEGRKRR 448
>gi|70988789|ref|XP_749248.1| DNA repair protein Ntg1 [Aspergillus fumigatus Af293]
gi|66846879|gb|EAL87210.1| DNA repair protein Ntg1, putative [Aspergillus fumigatus Af293]
Length = 432
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIPS+ +EL+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 276 IKAAAEILRDQYNSDIPSTAEELMKLPGVGPKMAYLCMSAAWGKDEGIGVDVHVHRITNL 335
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLP+++W IN LLVG GQT+C P+ RCG C +
Sbjct: 336 WGW-------HKTKTPEETRMALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCGECDLA 388
Query: 120 -SELCPSAFK 128
++LC S +
Sbjct: 389 GTKLCKSEVR 398
>gi|159128662|gb|EDP53776.1| DNA repair protein, putative [Aspergillus fumigatus A1163]
Length = 432
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIPS+ +EL+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 276 IKAAAEILRDQYNSDIPSTAEELMKLPGVGPKMAYLCMSAAWGKDEGIGVDVHVHRITNL 335
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLP+++W IN LLVG GQT+C P+ RCG C +
Sbjct: 336 WGW-------HKTKTPEETRMALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCGECDLA 388
Query: 120 -SELCPSAFK 128
++LC S +
Sbjct: 389 GTKLCKSEVR 398
>gi|134078608|emb|CAK32626.1| unnamed protein product [Aspergillus niger]
Length = 390
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +YD DIPS+ EL+ LPG+GPKMA L M+ W +GI VD HVHRI N
Sbjct: 245 IKAAAIILRDQYDSDIPSTAPELMKLPGVGPKMAFLCMSAAWGKHEGIGVDVHVHRITNL 304
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN LLVG GQT+C P+ RCG C +
Sbjct: 305 WGW-------HKTKNPEETRMALESWLPKDKWHEINKLLVGLGQTVCLPVARRCGECDLA 357
Query: 120 -SELCPSAFK 128
++LC S K
Sbjct: 358 GTKLCKSEIK 367
>gi|226291738|gb|EEH47166.1| endonuclease III [Paracoccidioides brasiliensis Pb18]
Length = 474
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I +YD DIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 317 IKEAAIILRDEYDSDIPPTIEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 376
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLP+++W IN LLVG GQT+C P+ RCG C +
Sbjct: 377 WGW-------HKTKTPEETRAALESWLPRDKWHEINKLLVGLGQTVCLPVARRCGECELA 429
Query: 120 -SELCPSAFK 128
S LC S K
Sbjct: 430 GSGLCKSEVK 439
>gi|164424761|ref|XP_960699.2| hypothetical protein NCU06654 [Neurospora crassa OR74A]
gi|157070649|gb|EAA31463.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 815
Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 66/142 (46%), Positives = 91/142 (64%), Gaps = 9/142 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A I +Y+ DIP +++ L+ LPG+GPKMAHL M+ GWN V+GI VD HVHRI
Sbjct: 292 LKQAAEILRDRYNSDIPDTIEGLMSLPGVGPKMAHLCMSADNGWNRVEGIGVDVHVHRIT 351
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW + P T +PE+TR LQ WLP+++W IN LLVGFGQ++C P+ +CG C
Sbjct: 352 NLWGWQNPP-----TKTPEETRLALQSWLPRDKWKEINWLLVGFGQSVCLPVGRKCGDCE 406
Query: 119 VS--ELCPSAFKDSSSPSSKSR 138
+ LC +A + + K R
Sbjct: 407 LGLRGLCKAAERKKVTEGRKRR 428
>gi|170093764|ref|XP_001878103.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646557|gb|EDR10802.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 236
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 85/128 (66%), Gaps = 7/128 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A ++D D+P ++DEL LPG+GPKMA L + V W+ GI VD HVHRI NR
Sbjct: 113 LQRAAQRLRDEFDSDVPKTVDELCSLPGVGPKMAFLALQVAWDLNHGIGVDVHVHRITNR 172
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW +P T +PE+TR LQ WLPKE IN +LVGFGQ +C P+ P+C C++S
Sbjct: 173 LGWHKKP-----TKNPEETRLNLQSWLPKELHREINHMLVGFGQVVCLPVGPKCDSCALS 227
Query: 121 --ELCPSA 126
+LCPSA
Sbjct: 228 TKQLCPSA 235
>gi|393241149|gb|EJD48672.1| DNA glycosylase [Auricularia delicata TFB-10046 SS5]
Length = 253
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 7/128 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A ++D D+P ++DEL LPG+GPKMA L + W GI VDTHVHRI NR
Sbjct: 112 LKKAAQKLRDEFDSDVPKTVDELCSLPGVGPKMAFLCLQSAWKLNVGIGVDTHVHRITNR 171
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW K T++PEQTR LQ WLPK+ +N +LVGFGQTIC P+ P+C +C +S
Sbjct: 172 LGW-----HKPTTTTPEQTRLNLQSWLPKDLHYDVNHMLVGFGQTICLPVGPKCDVCELS 226
Query: 121 --ELCPSA 126
+LCPSA
Sbjct: 227 AKKLCPSA 234
>gi|302652772|ref|XP_003018229.1| hypothetical protein TRV_07762 [Trichophyton verrucosum HKI 0517]
gi|291181848|gb|EFE37584.1| hypothetical protein TRV_07762 [Trichophyton verrucosum HKI 0517]
Length = 1112
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 89/145 (61%), Gaps = 10/145 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I ++D DIPS+++ L+ LPG+GPKMA+L M+ W+ +GI VD HVHRI N
Sbjct: 245 IKATAEILRDQFDSDIPSTVEGLISLPGVGPKMAYLCMSSAWSKHEGIGVDVHVHRITNL 304
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE TR L+ WLP+++W IN LLVG GQT+C P+ RC C +S
Sbjct: 305 WGW-------NKTKTPEATRAALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCAECDLS 357
Query: 121 --ELCPSAFKDSSSPSSKSRKSAQK 143
LC + K S S +K R S K
Sbjct: 358 GTGLCIAEIK-SKSRGTKKRISPVK 381
>gi|312073211|ref|XP_003139418.1| hypothetical protein LOAG_03833 [Loa loa]
Length = 130
Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 86/125 (68%), Gaps = 7/125 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I +YDGDIP++++EL LPG+G KMA+L M W+ ++G+ VDTHVHRI NR
Sbjct: 6 IKKVAKILKERYDGDIPNTIEELCSLPGVGEKMAYLAMCNAWDQMKGLGVDTHVHRISNR 65
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KTS+P+++R L+ +P+EEW +N LLVGFGQ C P+ P+C C
Sbjct: 66 LGWI-------KTSNPKESRIALEALVPREEWQELNKLLVGFGQQTCLPVLPKCSECLNR 118
Query: 121 ELCPS 125
+C +
Sbjct: 119 NICAA 123
>gi|340059436|emb|CCC53820.1| putative endonuclease III [Trypanosoma vivax Y486]
Length = 259
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 80/130 (61%), Gaps = 5/130 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + L ++G +P S +EL+ LPG+GPKMAHL + V GI VDTHVHRI R
Sbjct: 108 IKAATDMILKLHEGKVPQSYEELIALPGVGPKMAHLFLQAADGVVLGIGVDTHVHRIAQR 167
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV SPE TR+ L+ WLP+E W IN LLVG GQTIC P P+C C +
Sbjct: 168 FRWVPAT-----VKSPEDTRKALESWLPREHWGEINELLVGLGQTICAPRFPQCAECMAN 222
Query: 121 ELCPSAFKDS 130
+LCP+AF +S
Sbjct: 223 KLCPNAFVES 232
>gi|71027073|ref|XP_763180.1| endonuclease III [Theileria parva strain Muguga]
gi|68350133|gb|EAN30897.1| endonuclease III, putative [Theileria parva]
Length = 418
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 82/126 (65%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I +Y G +PS+ +L LPGIGPKMA+L++ V +N V G+ VD HVHRI NR
Sbjct: 292 IKKAAQILKDQYGGKVPSNKKDLESLPGIGPKMANLILQVAFNMVDGVAVDIHVHRITNR 351
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT +PE+T LQ LPK+ W INPLLVGFGQT CT P C C V+
Sbjct: 352 LGWV-------KTKTPEETSLKLQELLPKDLWSKINPLLVGFGQTFCTAAGPGCPTCPVN 404
Query: 121 ELCPSA 126
+ CP+
Sbjct: 405 KWCPTG 410
>gi|225679960|gb|EEH18244.1| endonuclease III lyase [Paracoccidioides brasiliensis Pb03]
Length = 474
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 86/141 (60%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I +YD DIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 317 IKEAAIILRDEYDSDIPPTIEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 376
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLP+++W IN LLVG GQT+C P+ RCG C +
Sbjct: 377 WGW-------HKTKTPEETRAALESWLPRDKWHEINKLLVGLGQTVCLPVARRCGECELA 429
Query: 120 -SELCPSAFKDSSSPSSKSRK 139
S LC S K K RK
Sbjct: 430 GSGLCKSEVKGWVGKVKKERK 450
>gi|295667235|ref|XP_002794167.1| endonuclease III [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286273|gb|EEH41839.1| endonuclease III [Paracoccidioides sp. 'lutzii' Pb01]
Length = 474
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 86/141 (60%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I +YD DIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 317 IKEAAIILRDEYDSDIPPTIEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 376
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLP+++W IN LLVG GQT+C P+ RCG C +
Sbjct: 377 WGW-------HKTKTPEETRAALESWLPRDKWHEINKLLVGLGQTVCLPVARRCGECELA 429
Query: 120 -SELCPSAFKDSSSPSSKSRK 139
S LC S K K RK
Sbjct: 430 GSGLCKSEVKGWVGKVKKERK 450
>gi|302506539|ref|XP_003015226.1| hypothetical protein ARB_06349 [Arthroderma benhamiae CBS 112371]
gi|291178798|gb|EFE34586.1| hypothetical protein ARB_06349 [Arthroderma benhamiae CBS 112371]
Length = 1131
Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 90/145 (62%), Gaps = 10/145 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I ++D DIPS+++ L+ LPG+GPKMA+L M+ W+ +GI VD HVHRI N
Sbjct: 218 IKATAEILRDQFDSDIPSTVEGLISLPGVGPKMAYLCMSSAWSKHEGIGVDVHVHRITNL 277
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE TR L+ WLP+++W IN LLVG GQT+C P+ RC C +S
Sbjct: 278 WGW-------NKTKTPEATRAALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCAECDLS 330
Query: 121 --ELCPSAFKDSSSPSSKSRKSAQK 143
LC + K S S ++K R S K
Sbjct: 331 GTGLCIAEIK-SKSRAAKKRISPVK 354
>gi|403417874|emb|CCM04574.1| predicted protein [Fibroporia radiculosa]
Length = 701
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 82/127 (64%), Gaps = 6/127 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A ++D D+P ++DEL LPG+GPKMA L + W GI VD HVHRI NR
Sbjct: 526 IKQTAEQLRDRFDSDVPKTVDELCSLPGVGPKMAFLALQDAWKLNAGIGVDVHVHRITNR 585
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW K +T +PE+TR LQ WLP E IN LLVGFGQTIC P+ P+C CS+
Sbjct: 586 LGW-----HKPQTKTPEETRLNLQSWLPLELHPEINSLLVGFGQTICMPVGPKCNDCSLR 640
Query: 121 E-LCPSA 126
E LCPSA
Sbjct: 641 EGLCPSA 647
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+D D+P ++DEL LPG+GPKMA L ++V W GI VD HVHRI NRLGW + P
Sbjct: 236 FDSDVPKTVDELCSLPGVGPKMAFLALHVAWKVNAGIGVDVHVHRITNRLGWHAPP---- 291
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCG 115
T +PE+TR LQ WLP E LLVGFGQ P+ R
Sbjct: 292 -TKNPEETRLNLQSWLPTELRPTFTGLLVGFGQPDTMPVLKRSA 334
>gi|449543329|gb|EMD34305.1| hypothetical protein CERSUDRAFT_117182 [Ceriporiopsis subvermispora
B]
Length = 252
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 83/130 (63%), Gaps = 6/130 (4%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+D D+P ++DEL LPG+GPKMA L + V W GI VD HVHRI NRLGW P
Sbjct: 102 FDSDVPKTVDELCSLPGVGPKMAFLALQVAWKLNVGIGVDVHVHRITNRLGWHKPP---- 157
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE-LCPSAFKDS 130
T +PE+TR LQ WLP E IN LLVGFGQTIC P+ PRC C +S+ LCPSA K
Sbjct: 158 -TKTPEETRLNLQSWLPTELHPEINHLLVGFGQTICLPVGPRCDECDLSQGLCPSARKVV 216
Query: 131 SSPSSKSRKS 140
+ K+ K+
Sbjct: 217 RKVTKKTVKA 226
>gi|121711106|ref|XP_001273169.1| DNA repair protein, putative [Aspergillus clavatus NRRL 1]
gi|119401319|gb|EAW11743.1| DNA repair protein, putative [Aspergillus clavatus NRRL 1]
Length = 421
Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 81/130 (62%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y DIPSS EL+ LPG+GPKMA L M+ W +GI VD HVHRI N
Sbjct: 265 IKATAEIIRDQYKSDIPSSATELMKLPGVGPKMAFLCMSAAWGKDEGIGVDVHVHRITNL 324
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLP+E+W IN LLVG GQT+C P+ RCG C +
Sbjct: 325 WGW-------HKTKTPEETRMALESWLPREKWHEINKLLVGLGQTVCLPVGRRCGECDLA 377
Query: 120 -SELCPSAFK 128
++LC S +
Sbjct: 378 GTKLCKSEVR 387
>gi|317037839|ref|XP_001402439.2| hypothetical protein ANI_1_176174 [Aspergillus niger CBS 513.88]
Length = 843
Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 65/130 (50%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +YD DIPS+ EL+ LPG+GPKMA L M+ W +GI VD HVHRI N
Sbjct: 261 IKAAAIILRDQYDSDIPSTAPELMKLPGVGPKMAFLCMSAAWGKHEGIGVDVHVHRITNL 320
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN LLVG GQT+C P+ RCG C +
Sbjct: 321 WGW-------HKTKNPEETRMALESWLPKDKWHEINKLLVGLGQTVCLPVARRCGECDLA 373
Query: 120 -SELCPSAFK 128
++LC S K
Sbjct: 374 GTKLCKSEIK 383
>gi|336472474|gb|EGO60634.1| hypothetical protein NEUTE1DRAFT_144022 [Neurospora tetrasperma
FGSC 2508]
gi|350294301|gb|EGZ75386.1| hypothetical protein NEUTE2DRAFT_105079 [Neurospora tetrasperma
FGSC 2509]
Length = 814
Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 90/142 (63%), Gaps = 9/142 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A I +Y+ DIP +++ L+ LPG+GPKMAHL M+ GWN V+GI VD HVHRI
Sbjct: 292 LKQAAEILRDRYNSDIPDTIEGLMSLPGVGPKMAHLCMSADNGWNRVEGIGVDVHVHRIT 351
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW + P T +PE+TR LQ WLP+++W IN LLVGFGQ+IC P+ +CG C
Sbjct: 352 NLWGWQNPP-----TKTPEETRLALQSWLPRDKWKEINWLLVGFGQSICLPVGRKCGDCE 406
Query: 119 VS--ELCPSAFKDSSSPSSKSR 138
+ LC +A + K R
Sbjct: 407 LGLRGLCKAAERKKVIEGRKRR 428
>gi|322698383|gb|EFY90154.1| putative DNA repair protein NTG1 [Metarhizium acridum CQMa 102]
Length = 399
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I K+ GDIP +++ L LPG+GPKMAHL ++ W+ +GI VD HVHRI N
Sbjct: 233 IKQAAVILRDKWKGDIPDTIEGLTSLPGVGPKMAHLCLSAAWDRTEGIGVDVHVHRITNL 292
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS-- 118
GW KT +PE+TR LQ WLP+++W IN LLVGFGQ +C P+ RCG C
Sbjct: 293 WGW-------NKTKNPEETRRALQSWLPRDKWREINWLLVGFGQAVCLPVGRRCGDCDLG 345
Query: 119 VSELCPSAFK 128
+S LC +A +
Sbjct: 346 LSGLCKAAER 355
>gi|326471890|gb|EGD95899.1| DNA repair protein Ntg1 [Trichophyton tonsurans CBS 112818]
Length = 421
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 85/138 (61%), Gaps = 9/138 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I K+D DIPS+++ L+ LPG+GPKMA+L M+ W+ +GI VD HVHRI N
Sbjct: 218 IKATAEILRDKFDSDIPSTVEGLISLPGVGPKMAYLCMSSAWSKHEGIGVDVHVHRITNL 277
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE TR L+ WLP+++W IN LLVG GQT+C P+ RC C +S
Sbjct: 278 WGW-------NKTKTPEATRAALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCAECDLS 330
Query: 121 --ELCPSAFKDSSSPSSK 136
LC + K S + K
Sbjct: 331 GTGLCIAEIKGKSRATKK 348
>gi|326477245|gb|EGE01255.1| DNA repair protein Ntg1 [Trichophyton equinum CBS 127.97]
Length = 421
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 85/138 (61%), Gaps = 9/138 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I K+D DIPS+++ L+ LPG+GPKMA+L M+ W+ +GI VD HVHRI N
Sbjct: 218 IKATAEILRDKFDSDIPSTVEGLISLPGVGPKMAYLCMSSAWSKHEGIGVDVHVHRITNL 277
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE TR L+ WLP+++W IN LLVG GQT+C P+ RC C +S
Sbjct: 278 WGW-------NKTKTPEATRAALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCAECDLS 330
Query: 121 --ELCPSAFKDSSSPSSK 136
LC + K S + K
Sbjct: 331 GTGLCIAEIKGKSRATKK 348
>gi|336262434|ref|XP_003346001.1| base-excision repair protein [Sordaria macrospora k-hell]
gi|380089594|emb|CCC12476.1| putative nuclear and mitochondrial base-excision repair protein
[Sordaria macrospora k-hell]
Length = 805
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 65/130 (50%), Positives = 87/130 (66%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A I +Y+ DIP +++ L+ LPG+GPKMAHL M+ GWN V+GI VD HVHRI
Sbjct: 280 LKQAAEILRDRYNSDIPDTIEGLMSLPGVGPKMAHLCMSAENGWNRVEGIGVDVHVHRIT 339
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW + P T +PE+TR LQ WLP+++W IN LLVGFGQ++C P+ +CG C
Sbjct: 340 NLWGWQNPP-----TKTPEETRLALQSWLPRDKWKEINWLLVGFGQSVCLPVGRKCGDCE 394
Query: 119 VS--ELCPSA 126
+ LC SA
Sbjct: 395 LGLRGLCKSA 404
>gi|212526280|ref|XP_002143297.1| DNA repair protein Ntg1, putative [Talaromyces marneffei ATCC
18224]
gi|210072695|gb|EEA26782.1| DNA repair protein Ntg1, putative [Talaromyces marneffei ATCC
18224]
Length = 418
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 88/145 (60%), Gaps = 9/145 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I +YD DIP++ +EL+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 275 IKQVAEILRDQYDSDIPTTPEELMKLPGVGPKMAYLCMSAAWGKHEGIGVDVHVHRITNM 334
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW T +PE+TR LQ WLP+++W IN LLVG GQT C P+ +CG C +
Sbjct: 335 WGW-------HATKNPEETRIALQSWLPRDKWHEINKLLVGLGQTACLPVGRKCGECDLA 387
Query: 120 -SELCPSAFKDSSSPSSKSRKSAQK 143
+ LC S + + + K K K
Sbjct: 388 GTGLCKSEIRGMVAKTKKEVKEEAK 412
>gi|350633857|gb|EHA22221.1| hypothetical protein ASPNIDRAFT_50950 [Aspergillus niger ATCC 1015]
Length = 907
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 65/130 (50%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +YD DIPS+ EL+ LPG+GPKMA L M+ W +GI VD HVHRI N
Sbjct: 274 IKAAAIILRDQYDSDIPSTAPELMKLPGVGPKMAFLCMSAAWGKHEGIGVDVHVHRITNL 333
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN LLVG GQT+C P+ RCG C +
Sbjct: 334 WGW-------HKTKNPEETRMALESWLPKDKWHEINKLLVGLGQTVCLPVARRCGECDLA 386
Query: 120 -SELCPSAFK 128
++LC S K
Sbjct: 387 GTKLCKSEIK 396
>gi|453089077|gb|EMF17117.1| DNA glycosylase, partial [Mycosphaerella populorum SO2202]
Length = 267
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 86/132 (65%), Gaps = 9/132 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I ++DGDIP S++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 104 IKQVAVILKEQFDGDIPQSIEGLMSLPGVGPKMAYLTMSAAWGRDEGIGVDVHVHRITNL 163
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
W KTS+PE +R L+ WLP+E+W IN LLVG GQTIC PI +C C +
Sbjct: 164 WHW-------HKTSTPEHSRVELESWLPREKWHEINHLLVGLGQTICLPIGRKCDECDLG 216
Query: 120 -SELCPSAFKDS 130
+LCPSA + S
Sbjct: 217 KQKLCPSAVERS 228
>gi|219848317|ref|YP_002462750.1| DNA-(apurinic or apyrimidinic site) lyase [Chloroflexus aggregans
DSM 9485]
gi|219542576|gb|ACL24314.1| DNA-(apurinic or apyrimidinic site) lyase [Chloroflexus aggregans
DSM 9485]
Length = 220
Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 85/126 (67%), Gaps = 11/126 (8%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
++IA IC L KY+G++PS LDELL LPG+G K A+LV+ G+ + GICVD HVHRIC
Sbjct: 95 RQIAAICQILLEKYNGEVPSDLDELLKLPGVGRKTANLVITAGFG-LPGICVDVHVHRIC 153
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
NR G+V +T +PE+T L+ LP+ W+PIN LLV GQ IC P PRC +C
Sbjct: 154 NRWGYV-------QTRTPEETEMALRAKLPQRYWIPINRLLVTLGQNICHPTSPRCSICP 206
Query: 119 VSELCP 124
+ +LCP
Sbjct: 207 IRDLCP 212
>gi|428671556|gb|EKX72474.1| endonuclease III family member protein [Babesia equi]
Length = 666
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 84/129 (65%), Gaps = 7/129 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I K+ G +P +++EL+ LPG+GPKMA+LV+ + + + GI VD HVHRI NR
Sbjct: 540 IKKTATIIHEKFGGRVPDTMEELVSLPGVGPKMANLVIQLAFKRIDGISVDLHVHRISNR 599
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT +P++TR LQ +P++ W +N LLVGFGQTICT P C C +
Sbjct: 600 LGWV-------KTKTPDETRLQLQELIPQKLWAEVNHLLVGFGQTICTAAGPGCATCGAN 652
Query: 121 ELCPSAFKD 129
+ CP+ +
Sbjct: 653 KWCPTGIAN 661
>gi|242821687|ref|XP_002487731.1| A/G-specific adenine glycosylase/endonuclease III, putative
[Talaromyces stipitatus ATCC 10500]
gi|218712652|gb|EED12077.1| A/G-specific adenine glycosylase/endonuclease III, putative
[Talaromyces stipitatus ATCC 10500]
Length = 443
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 87/145 (60%), Gaps = 9/145 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I KY+ DIP + +EL+ LPG+GPKMA+L M+ W GI VD HVHRI N
Sbjct: 287 IKQVAIILRDKYESDIPPTPEELMALPGVGPKMAYLCMSAAWGKYLGIGVDVHVHRITNL 346
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW T +PE+TR LQLWLP+++W IN LL+G GQT C P+ RCG C +
Sbjct: 347 WGW-------HATKTPEETRIALQLWLPRDKWHEINKLLIGLGQTACLPVGRRCGECDLA 399
Query: 120 -SELCPSAFKDSSSPSSKSRKSAQK 143
+ LC S K + + + K K
Sbjct: 400 GTGLCKSEIKGLVAKTKREVKEEAK 424
>gi|402589187|gb|EJW83119.1| hypothetical protein WUBG_05972, partial [Wuchereria bancrofti]
Length = 130
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 85/125 (68%), Gaps = 7/125 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I +YDGDIP++++ L LPG+G KMA+L M W+ ++G+ VDTHVHRI NR
Sbjct: 6 IKKVAEILKERYDGDIPNTVEGLCSLPGVGEKMAYLAMCTAWDQLEGLGVDTHVHRISNR 65
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KTS+P+++R L+ +P+E+W +N LLVGFGQ C P+ P+C C
Sbjct: 66 LGWI-------KTSNPKESRVALEALVPREQWQELNKLLVGFGQQTCLPVLPKCSECLNK 118
Query: 121 ELCPS 125
+C +
Sbjct: 119 NICAA 123
>gi|239614218|gb|EEQ91205.1| DNA repair protein Ntg1 [Ajellomyces dermatitidis ER-3]
Length = 415
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIP + + L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 257 IKAAAVILRDEYNSDIPPTAEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 316
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W +N LLVG GQT+C P+ RCG C +
Sbjct: 317 WGW-------HKTKTPEETRAALESWLPKDKWHEVNKLLVGLGQTVCLPVARRCGECELA 369
Query: 120 -SELCPSAFKDSSSPSSKSRK 139
+ LC S K ++ + RK
Sbjct: 370 GTGLCKSEIKGWTAKVKRERK 390
>gi|261204483|ref|XP_002629455.1| DNA repair protein Ntg1 [Ajellomyces dermatitidis SLH14081]
gi|239587240|gb|EEQ69883.1| DNA repair protein Ntg1 [Ajellomyces dermatitidis SLH14081]
Length = 416
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIP + + L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 258 IKAAAVILRDEYNSDIPPTAEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 317
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W +N LLVG GQT+C P+ RCG C +
Sbjct: 318 WGW-------HKTKTPEETRAALESWLPKDKWHEVNKLLVGLGQTVCLPVARRCGECELA 370
Query: 120 -SELCPSAFKDSSSPSSKSRK 139
+ LC S K ++ + RK
Sbjct: 371 GTGLCKSEIKGWTAKVKRERK 391
>gi|238494694|ref|XP_002378583.1| DNA repair protein Ntg1, putative [Aspergillus flavus NRRL3357]
gi|220695233|gb|EED51576.1| DNA repair protein Ntg1, putative [Aspergillus flavus NRRL3357]
Length = 347
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y DIPS+ +EL+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 199 IKAAAIILRDQYQSDIPSTAEELMKLPGVGPKMAYLCMSAAWGKHEGIGVDVHVHRITNL 258
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE TR+ L+ WLPK++W IN LLVG GQT+C P+ +CG C +
Sbjct: 259 WGW-------NKTKTPEDTRKALESWLPKDKWHEINKLLVGLGQTVCLPVGRKCGDCDLA 311
Query: 120 -SELCPSAFK 128
++LC S +
Sbjct: 312 GTKLCKSEIR 321
>gi|327353694|gb|EGE82551.1| DNA repair protein Ntg1 [Ajellomyces dermatitidis ATCC 18188]
Length = 539
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 86/141 (60%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIP + + L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 381 IKAAAVILRDEYNSDIPPTAEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 440
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W +N LLVG GQT+C P+ RCG C +
Sbjct: 441 WGW-------HKTKTPEETRAALESWLPKDKWHEVNKLLVGLGQTVCLPVARRCGECELA 493
Query: 120 -SELCPSAFKDSSSPSSKSRK 139
+ LC S K ++ + RK
Sbjct: 494 GTGLCKSEIKGWTAKVKRERK 514
>gi|391871378|gb|EIT80538.1| endonuclease III [Aspergillus oryzae 3.042]
Length = 347
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y DIPS+ +EL+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 199 IKAAAIILRDQYQSDIPSTAEELMKLPGVGPKMAYLCMSAAWGKHEGIGVDVHVHRITNL 258
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE TR+ L+ WLPK++W IN LLVG GQT+C P+ +CG C +
Sbjct: 259 WGW-------NKTKTPEDTRKALESWLPKDKWHEINKLLVGLGQTVCLPVGRKCGDCDLA 311
Query: 120 -SELCPSAFK 128
++LC S +
Sbjct: 312 GTKLCKSEIR 321
>gi|242780466|ref|XP_002479601.1| DNA repair protein Ntg1, putative [Talaromyces stipitatus ATCC
10500]
gi|218719748|gb|EED19167.1| DNA repair protein Ntg1, putative [Talaromyces stipitatus ATCC
10500]
Length = 448
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 83/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I +Y+ DIPS+ EL+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 271 IKQVANILRDQYNSDIPSTPVELMALPGVGPKMAYLCMSAAWGKHEGIGVDVHVHRITNL 330
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW T +PE+TR LQ WLP+++W IN LLVG GQT+C P+ RCG C +
Sbjct: 331 WGW-------HTTKTPEETRIALQSWLPRDKWHEINKLLVGLGQTVCLPVGRRCGECELA 383
Query: 120 -SELCPSAFK 128
+ LC S K
Sbjct: 384 GTGLCKSEVK 393
>gi|225559205|gb|EEH07488.1| DNA base excision repair N-glycosylase 1, mitochondrial precursor
[Ajellomyces capsulatus G186AR]
Length = 535
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 378 IKAAAVILRDEYNSDIPPTVEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 437
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN LLVG GQT+C P+ RCG C +
Sbjct: 438 WGW-------HKTKTPEETRAALESWLPKDKWHEINKLLVGLGQTVCLPVARRCGECELA 490
Query: 120 -SELCPSAFK 128
+ LC S K
Sbjct: 491 GTGLCKSEIK 500
>gi|336380789|gb|EGO21942.1| hypothetical protein SERLADRAFT_475004 [Serpula lacrymans var.
lacrymans S7.9]
Length = 378
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 90/145 (62%), Gaps = 10/145 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A ++D D+P ++DEL LPG+GPKMA L + V W GI VD HVHRI NR
Sbjct: 214 IKQTALRLRDEFDSDVPKTVDELCSLPGVGPKMAFLALQVAWKLNVGIGVDVHVHRITNR 273
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW +P T +PE+TR LQ WLP E IN +LVGFGQ +C P+ P CG C +S
Sbjct: 274 LGWHQRP-----TKNPEETRLNLQSWLPTELHPEINHMLVGFGQMVCLPVGPLCGSCRLS 328
Query: 121 E--LCPSAFKDSSSPSSKSRKSAQK 143
LCPSA + ++K RK++ +
Sbjct: 329 SLGLCPSA---QGTATAKKRKTSAR 350
>gi|18390586|ref|NP_563752.1| endonuclease III [Arabidopsis thaliana]
gi|15294154|gb|AAK95254.1|AF410268_1 At1g05900/T20M3_15 [Arabidopsis thaliana]
gi|23505879|gb|AAN28799.1| At1g05900/T20M3_15 [Arabidopsis thaliana]
gi|332189794|gb|AEE27915.1| endonuclease III [Arabidopsis thaliana]
Length = 314
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 65/71 (91%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A ICL +YDGDIP +L+ELL LPG+GPK+AHLV++V WN+VQGICVDTHVHRICNR
Sbjct: 241 VKKVAKICLMEYDGDIPRTLEELLSLPGVGPKIAHLVLHVAWNDVQGICVDTHVHRICNR 300
Query: 61 LGWVSQPGRKQ 71
LGWVS+PG KQ
Sbjct: 301 LGWVSKPGTKQ 311
>gi|302914726|ref|XP_003051196.1| hypothetical protein NECHADRAFT_41785 [Nectria haematococca mpVI
77-13-4]
gi|256732134|gb|EEU45483.1| hypothetical protein NECHADRAFT_41785 [Nectria haematococca mpVI
77-13-4]
Length = 439
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I K++GDIP +++ L LPG+GPKMA+L M+V W +GI VD HVHRI N
Sbjct: 255 IKQAAEIIRDKWNGDIPDTIEGLTSLPGVGPKMAYLCMSVAWGRTEGIGVDVHVHRITNL 314
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR LQ WLPK+ W IN LLVG GQ++C P+ +CG C +
Sbjct: 315 WGW-------NKTKNPEETRAALQSWLPKDRWHEINHLLVGLGQSVCLPVGRKCGECDLG 367
Query: 120 -SELCPSA 126
LC +A
Sbjct: 368 MEGLCKAA 375
>gi|255939103|ref|XP_002560321.1| Pc15g00960 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584943|emb|CAP82982.1| Pc15g00960 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 428
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I ++ GDIPS+ + L+ LPG+GPKMA+L M+ W GI VD HVHRI N
Sbjct: 282 IKATALILRDQHGGDIPSTPEGLMALPGVGPKMAYLCMSAAWGEHVGIGVDVHVHRITNL 341
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE+TRE LQ WLP+ +W IN LLVG GQT+C P++ RCG C ++
Sbjct: 342 WGW-------NKTKTPEETREALQSWLPRNKWHEINHLLVGLGQTVCLPVKRRCGDCELA 394
Query: 121 --ELCPSAFK 128
LC S +
Sbjct: 395 RLRLCKSEIR 404
>gi|383788949|ref|YP_005473518.1| putative DNA glycosylase/AP lyase [Caldisericum exile AZM16c01]
gi|381364586|dbj|BAL81415.1| putative DNA glycosylase/AP lyase [Caldisericum exile AZM16c01]
Length = 218
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 82/125 (65%), Gaps = 8/125 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A + KYDG +P+ L+ELL L G+G K A+LV+ +++ GICVDTHVHRI NR
Sbjct: 95 IKEVAKTLIEKYDGRVPNDLEELLKLKGVGRKTANLVITEAFDDY-GICVDTHVHRISNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT +PEQT L+ LPK+ W INP+LV FGQ IC PI P C C +
Sbjct: 154 LGWV-------KTKNPEQTEMELRKILPKKYWKTINPILVTFGQNICKPISPLCSKCPIE 206
Query: 121 ELCPS 125
LCP
Sbjct: 207 PLCPK 211
>gi|313231808|emb|CBY08920.1| unnamed protein product [Oikopleura dioica]
Length = 303
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 77/125 (61%), Gaps = 6/125 (4%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K+ IC +Y DIP ++++L+ LPGIGPKM +L ++ W +GI VD HVHRIC RL
Sbjct: 176 KVGEICRDQYSSDIPDTIEDLVKLPGIGPKMGYLALSCAWGKNEGIGVDVHVHRICQRLR 235
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+ +P +PE TR L+ WLPKE+W IN LLVGFGQ IC+ P C C +
Sbjct: 236 FTKKP------KNPEATRNQLESWLPKEKWQEINKLLVGFGQQICSAKSPNCTNCLNDPI 289
Query: 123 CPSAF 127
CP F
Sbjct: 290 CPKDF 294
>gi|358395681|gb|EHK45068.1| hypothetical protein TRIATDRAFT_308617 [Trichoderma atroviride IMI
206040]
Length = 422
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I +++GDIP S+ L LPG+GPKMA+L ++V WN +GI VD HVHRI N
Sbjct: 236 IKRTAEILRDEWNGDIPDSIQGLTSLPGVGPKMAYLCLSVAWNRTEGIGVDVHVHRITNM 295
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS-- 118
GW KT +PE+TR LQ WLP + W IN LLVG GQ++C P+ RCG C
Sbjct: 296 WGW-------NKTKNPEETRLALQSWLPHDRWREINSLLVGLGQSVCLPVGRRCGDCDLG 348
Query: 119 VSELCPSAFK 128
+ LC +A +
Sbjct: 349 LQGLCKAAER 358
>gi|393220744|gb|EJD06230.1| DNA glycosylase [Fomitiporia mediterranea MF3/22]
Length = 260
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/144 (50%), Positives = 89/144 (61%), Gaps = 10/144 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + D+P ++DEL LPG+GPKMA L + W+ GI VD HVHRI NR
Sbjct: 112 IKQAAIRLRDDFGSDVPKTVDELCSLPGVGPKMAFLCLQRAWDINDGIGVDVHVHRITNR 171
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
L W K +T +PE+TR LQ WLPKE IN LLVGFGQTIC P+ PRC C S
Sbjct: 172 LRW-----HKPQTKTPEETRLNLQSWLPKELHPDINHLLVGFGQTICLPVGPRCDDCTLS 226
Query: 119 VSELCPSAFKDSSSPSSKSRKSAQ 142
S LCPSA + +SKSRK+ Q
Sbjct: 227 TSGLCPSA---QNVKTSKSRKALQ 247
>gi|156065713|ref|XP_001598778.1| hypothetical protein SS1G_00867 [Sclerotinia sclerotiorum 1980]
gi|154691726|gb|EDN91464.1| hypothetical protein SS1G_00867 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 437
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 89/145 (61%), Gaps = 9/145 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +++GDIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 232 IKAAAEILKDQWNGDIPDTIEGLMSLPGVGPKMAYLCMSSAWGRTEGIGVDVHVHRITNM 291
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW + G PE+TR LQ WLPKE W IN LLVGFGQTIC P+ +CG C +
Sbjct: 292 WGWHTTKG-------PEETRLALQAWLPKELWHEINWLLVGFGQTICLPVGKKCGSCELG 344
Query: 120 -SELCPSAFKDSSSPSSKSRKSAQK 143
+ LC +A + + K+++ K
Sbjct: 345 MNGLCKAADRSKVTIGRKTKEEKIK 369
>gi|315045922|ref|XP_003172336.1| DNA base excision repair N-glycosylase 1 [Arthroderma gypseum CBS
118893]
gi|311342722|gb|EFR01925.1| DNA base excision repair N-glycosylase 1 [Arthroderma gypseum CBS
118893]
Length = 417
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 78/120 (65%), Gaps = 7/120 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I ++D DIPS+++ L+ LPG+GPKMA+L M+ WN +G+ VD HVHRI N
Sbjct: 218 IKATAEILRDRFDSDIPSTVEGLISLPGVGPKMAYLCMSSAWNRHEGVGVDVHVHRITNL 277
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE TR L+ WLP+++W IN LLVG GQT+C P+ RC C +S
Sbjct: 278 WGW-------HKTKNPEATRAALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCAECDLS 330
>gi|240282136|gb|EER45639.1| endonuclease III [Ajellomyces capsulatus H143]
Length = 533
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 377 IKAAAIILRDEYNSDIPPTVEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 436
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN LLVG GQT+C P+ RCG C +
Sbjct: 437 WGW-------HKTKTPEETRAALESWLPKDKWHEINKLLVGLGQTVCLPVARRCGECELA 489
Query: 120 -SELCPSAFK 128
+ LC S +
Sbjct: 490 GTGLCKSEIR 499
>gi|340923756|gb|EGS18659.1| hypothetical protein CTHT_0052650 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 471
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 69/149 (46%), Positives = 92/149 (61%), Gaps = 13/149 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A I K+ GDIP +++ L LPG+GPKMAHL M+ GWN V+GI VD HVHRI
Sbjct: 281 LKQTAEILRDKFGGDIPPTVETLCSLPGVGPKMAHLCMSATYGWNKVEGIGVDVHVHRIT 340
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIR--PRCGM 116
N GW +T +PE TR+ L+ WLP+++W IN LLVGFGQT+C P++ RCG
Sbjct: 341 NLWGW-------NETKTPEDTRKALESWLPRDKWKEINWLLVGFGQTVCGPVKGSRRCGE 393
Query: 117 CSVS--ELCPSAFKDSSSPSSKSRKSAQK 143
C + LC SA + + K R+ K
Sbjct: 394 CELGLRGLCKSAERGKVNEGRKRREMEGK 422
>gi|325088276|gb|EGC41586.1| endonuclease III [Ajellomyces capsulatus H88]
Length = 533
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 377 IKAAAIILRDEYNSDIPPTVEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 436
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN LLVG GQT+C P+ RCG C +
Sbjct: 437 WGW-------HKTKTPEETRAALESWLPKDKWHEINKLLVGLGQTVCLPVARRCGECELA 489
Query: 120 -SELCPSAFK 128
+ LC S +
Sbjct: 490 GTGLCKSEIR 499
>gi|409082861|gb|EKM83219.1| hypothetical protein AGABI1DRAFT_33588 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 335
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 86/137 (62%), Gaps = 10/137 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A L +D D+P ++ EL LPG+GPKMA L ++V W+ GI VD+HVHRI N
Sbjct: 159 IKQTAQRLLHDFDSDVPKTVKELCSLPGVGPKMAILALHVAWDINTGIGVDSHVHRITNL 218
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW ++P T S E+TR LQ WLP E IN LLVGFGQ IC P +PRC C +S
Sbjct: 219 LGWYNKP-----TKSAEETRLSLQSWLPAEFHREINGLLVGFGQVICLPTKPRCDTCELS 273
Query: 121 E--LCPS---AFKDSSS 132
LCP+ AFK + S
Sbjct: 274 ARGLCPNARMAFKATDS 290
>gi|336368058|gb|EGN96402.1| hypothetical protein SERLA73DRAFT_170779 [Serpula lacrymans var.
lacrymans S7.3]
Length = 302
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 90/145 (62%), Gaps = 10/145 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A ++D D+P ++DEL LPG+GPKMA L + V W GI VD HVHRI NR
Sbjct: 138 IKQTALRLRDEFDSDVPKTVDELCSLPGVGPKMAFLALQVAWKLNVGIGVDVHVHRITNR 197
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW +P T +PE+TR LQ WLP E IN +LVGFGQ +C P+ P CG C +S
Sbjct: 198 LGWHQRP-----TKNPEETRLNLQSWLPTELHPEINHMLVGFGQMVCLPVGPLCGSCRLS 252
Query: 121 E--LCPSAFKDSSSPSSKSRKSAQK 143
LCPSA + ++K RK++ +
Sbjct: 253 SLGLCPSA---QGTATAKKRKTSAR 274
>gi|71020263|ref|XP_760362.1| hypothetical protein UM04215.1 [Ustilago maydis 521]
gi|46099986|gb|EAK85219.1| hypothetical protein UM04215.1 [Ustilago maydis 521]
Length = 516
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 81/130 (62%), Gaps = 10/130 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I + GD+P ++DEL+ LPG+GPKMA L ++ V GI VDTHVHR+ NR
Sbjct: 346 LKSAARILADDFQGDVPRTVDELVSLPGVGPKMAFLALSSMGIQV-GIGVDTHVHRLTNR 404
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW KT +PE+TR LQ WLP + IN LLVGFGQ IC P+ PRC +C V
Sbjct: 405 LGW-------HKTKTPEETRLNLQSWLPTQLHANINRLLVGFGQVICVPVGPRCDLCDVG 457
Query: 121 E--LCPSAFK 128
LCPS K
Sbjct: 458 RAGLCPSFRK 467
>gi|342887581|gb|EGU87063.1| hypothetical protein FOXB_02457 [Fusarium oxysporum Fo5176]
Length = 399
Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 91/145 (62%), Gaps = 11/145 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I K+DGDIP++++ L+ LPG+GPKMA+L M+V W GI VD HVHRI N
Sbjct: 237 IKQTAEILRDKWDGDIPNTIEGLVSLPGVGPKMAYLCMSVAWGKHLGIGVDVHVHRITNL 296
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS-- 118
GW KT +PE+TR LQ WLP++ W IN LLVG GQ++C P+ +CG C
Sbjct: 297 WGW-------HKTKNPEETRTTLQSWLPQDRWHEINHLLVGLGQSVCLPVGRKCGECDLG 349
Query: 119 VSELCPSAFKDSSSPSSKSRKSAQK 143
+ LC +A D + S+ + A+K
Sbjct: 350 LEGLCKAA--DRAKVSAGRQLKAEK 372
>gi|389747875|gb|EIM89053.1| DNA glycosylase [Stereum hirsutum FP-91666 SS1]
Length = 477
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A +D D+P ++DEL LPG+GPKMA L + W GI VD HVHRI N
Sbjct: 262 IKQSAQRLRDSFDSDVPKTVDELCSLPGVGPKMAFLCLQSAWKLNHGIGVDVHVHRITNW 321
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW P T +PEQTR LQ WLPKE IN LLVGFGQ ICTP+ PRC C++S
Sbjct: 322 LGWHRPP-----TKTPEQTRLNLQSWLPKELHGEINHLLVGFGQVICTPVAPRCTECTLS 376
Query: 121 ----ELCPSA 126
LCPSA
Sbjct: 377 PSGLGLCPSA 386
>gi|327304823|ref|XP_003237103.1| DNA base excision repair N-glycosylase [Trichophyton rubrum CBS
118892]
gi|326460101|gb|EGD85554.1| DNA base excision repair N-glycosylase [Trichophyton rubrum CBS
118892]
Length = 460
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 7/120 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I ++D DIPS+++ L+ LPG+GPKMA+L M+ WN +GI VD HVHRI N
Sbjct: 258 IKATAEILRDQFDSDIPSTVEGLISLPGVGPKMAYLCMSSAWNKHEGIGVDVHVHRITNL 317
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE TR L+ WLP+++W IN LLVG GQT+C P+ RC C +S
Sbjct: 318 WGW-------NKTKTPEATRAALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCTECDLS 370
>gi|429850189|gb|ELA25486.1| DNA repair protein ntg1 [Colletotrichum gloeosporioides Nara gc5]
Length = 440
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 86/141 (60%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I K+DGD+P +++ L LPG+GPKM +L ++ W+ +GI VD HVHRI N
Sbjct: 250 IKAAAEILRDKFDGDVPDTIEGLTSLPGVGPKMGYLCLSAAWDKTEGIGVDVHVHRITNL 309
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
GW KT+ PE TR LQ WLPK++W IN LLVG GQT+C P+ +CG C
Sbjct: 310 WGW-------HKTTQPEGTRMALQSWLPKDKWREINWLLVGLGQTVCLPVGRKCGDCQLG 362
Query: 119 VSELCPSAFKDSSSPSSKSRK 139
+ LC +A + + K+R+
Sbjct: 363 LKGLCKAAERKKVTEGRKARE 383
>gi|330933705|ref|XP_003304261.1| hypothetical protein PTT_16793 [Pyrenophora teres f. teres 0-1]
gi|311319189|gb|EFQ87616.1| hypothetical protein PTT_16793 [Pyrenophora teres f. teres 0-1]
Length = 391
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 9/126 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I K++ DIP +++ L+ LPG+GPKM +L ++ W +GI VD HVHRI N
Sbjct: 206 IKQTAEILRDKWNSDIPDNIEGLISLPGVGPKMGYLCLSAAWGRTEGIGVDVHVHRIVNL 265
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
W KT +PEQTR L+ WLPKE+W IN LLVGFGQTIC P+ +CG C ++
Sbjct: 266 WKW-------HKTQTPEQTRAALESWLPKEKWHGINNLLVGFGQTICLPVGRKCGNCKLA 318
Query: 121 E--LCP 124
+ LCP
Sbjct: 319 DRGLCP 324
>gi|340517593|gb|EGR47837.1| hypothetical protein TRIREDRAFT_30805 [Trichoderma reesei QM6a]
Length = 250
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I +++GDIP +++ L LPG+GPKMA+L ++V WN +GI VD HVHRI N
Sbjct: 117 IKKAAEILRDEWNGDIPDTVEGLTSLPGVGPKMAYLCLSVAWNRTEGIGVDVHVHRITNM 176
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE+TR LQ WLP++ W IN LLVG GQ++C P+ RCG C +
Sbjct: 177 WGW-------HKTKNPEETRLALQSWLPRDRWREINGLLVGLGQSVCLPVGRRCGECDLG 229
Query: 121 --ELCPSAFK 128
LC +A +
Sbjct: 230 LQGLCKAAER 239
>gi|380488747|emb|CCF37167.1| HhH-GPD superfamily base excision DNA repair protein
[Colletotrichum higginsianum]
Length = 439
Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 86/141 (60%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I K+DGDIP +++ L LPG+GPKMA+L ++ W+ +GI VD HVHRI N
Sbjct: 279 IKASAEILRDKFDGDIPDTIEGLTSLPGVGPKMAYLCLSAAWDRTEGIGVDVHVHRITNL 338
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT+ PE TR LQ WLP+ W IN LLVGFGQT+C P+ +CG C +
Sbjct: 339 WGW-------HKTTQPEATRLALQGWLPRNRWREINWLLVGFGQTVCLPVGRKCGDCELG 391
Query: 121 --ELCPSAFKDSSSPSSKSRK 139
+C +A + + ++R+
Sbjct: 392 LRGMCRAAERKKVNEGRRARE 412
>gi|126652805|ref|XP_001388380.1| endonuclease III [Cryptosporidium parvum Iowa II]
gi|126117473|gb|EAZ51573.1| endonuclease III, putative [Cryptosporidium parvum Iowa II]
Length = 189
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 87/136 (63%), Gaps = 7/136 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ I + Y G +P ++L++LPGIGPKMA+L++ +G+ V GI VDTH+HRI NR
Sbjct: 61 LKEISRIIIQNYSGKVPEKYEQLVMLPGIGPKMANLILQIGFGIVVGISVDTHMHRIFNR 120
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GWV KT +P +T + ++ LP+ W IN + VG+GQTIC PI P+C C++
Sbjct: 121 IGWV-------KTKNPIETSKEMEKMLPRIYWNDINKVFVGYGQTICKPINPKCQECNIR 173
Query: 121 ELCPSAFKDSSSPSSK 136
+ C K S+K
Sbjct: 174 DYCSHGMKWKKKASTK 189
>gi|320588628|gb|EFX01096.1| DNA repair protein [Grosmannia clavigera kw1407]
Length = 461
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A ++DGDIP + D L+ LPG+GPKMA+L ++ GWN V+GI VD HVHRI
Sbjct: 286 LKQAAEQLRDRWDGDIPPTADGLMALPGVGPKMAYLCLSAEHGWNRVEGIGVDVHVHRIT 345
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW +PG +PE TR LQ WLP++ W +N LLVGFGQ +C P +CG+C+
Sbjct: 346 NLWGW-QRPG-SPAAKTPESTRLALQSWLPRDRWKELNWLLVGFGQKVCLPQGAKCGVCT 403
Query: 119 VS--ELCPSAFKDSSSPSSKSRKSAQ 142
V LCP+A + + + + A+
Sbjct: 404 VGLRGLCPAADRKKVAEGRRRLQEAK 429
>gi|443898423|dbj|GAC75758.1| endonuclease III [Pseudozyma antarctica T-34]
Length = 537
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 80/127 (62%), Gaps = 10/127 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +DGD+P ++DEL LPG+GPKMA L ++ V GI VDTHVHR+ NR
Sbjct: 338 LKSAARILAADFDGDVPRTVDELCSLPGVGPKMAFLALSSMGIQV-GIGVDTHVHRMTNR 396
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW T +PEQTR LQ WLP+E IN LLVGFGQ IC P PRC +C+V
Sbjct: 397 LGW-------HDTKTPEQTRLNLQSWLPRELHPHINRLLVGFGQVICVPTGPRCDLCNVG 449
Query: 121 E--LCPS 125
LCPS
Sbjct: 450 SAGLCPS 456
>gi|154304871|ref|XP_001552839.1| hypothetical protein BC1G_09021 [Botryotinia fuckeliana B05.10]
Length = 437
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +++GDIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 233 IKAAAEILRDQWNGDIPDTIEGLMSLPGVGPKMAYLCMSSAWGRTEGIGVDVHVHRITNM 292
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW T PE+TR LQ WLPKE W IN LLVGFGQT+C P+ +CG C +
Sbjct: 293 WGW-------HTTKGPEETRLALQAWLPKELWHEINWLLVGFGQTVCLPVGKKCGSCELG 345
Query: 120 -SELCPSA 126
+ LC +A
Sbjct: 346 MNGLCKAA 353
>gi|388855561|emb|CCF50784.1| related to NTG1-DNA repair protein [Ustilago hordei]
Length = 509
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 81/127 (63%), Gaps = 10/127 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I + GD+P ++DEL LPG+GPKMA L ++ + GI VDTHVHR+ NR
Sbjct: 308 LKSAARILKDDFQGDLPRTVDELCSLPGVGPKMAFLALSSMGIQI-GIGVDTHVHRLTNR 366
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW KT++PEQTR LQ WLP+E IN LLVGFGQ IC P+ PRC +C V
Sbjct: 367 LGW-------HKTTTPEQTRLNLQSWLPQELHAKINSLLVGFGQVICVPLGPRCDLCDVG 419
Query: 121 E--LCPS 125
+ CPS
Sbjct: 420 KAGFCPS 426
>gi|154273841|ref|XP_001537772.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415380|gb|EDN10733.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 532
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+ DIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 377 IKAAAIILRDEYNFDIPPTVEGLMRLPGVGPKMAYLCMSSAWGRDEGIGVDVHVHRITNL 436
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN LLVG GQT+C P+ RCG C +
Sbjct: 437 WGW-------HKTKTPEETRAALESWLPKDKWHEINKLLVGLGQTVCLPVARRCGECELA 489
Query: 120 -SELCPSAFK 128
+ LC S +
Sbjct: 490 GTGLCKSEIR 499
>gi|358388627|gb|EHK26220.1| hypothetical protein TRIVIDRAFT_17977, partial [Trichoderma virens
Gv29-8]
Length = 249
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 82/128 (64%), Gaps = 9/128 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I +++GDIP +++ L LPG+GPKMA+L ++V WN +GI VD HVHRI N
Sbjct: 117 IKKTAEILRDEWNGDIPDTVEGLTSLPGVGPKMAYLCLSVAWNRTEGIGVDVHVHRITNM 176
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE+TR LQ WLP + W IN LLVG GQ++C P+ RCG C +
Sbjct: 177 WGW-------NKTKNPEETRLALQSWLPHDRWREINGLLVGLGQSVCLPVGRRCGECDLG 229
Query: 121 --ELCPSA 126
LC +A
Sbjct: 230 LQGLCKAA 237
>gi|425781088|gb|EKV19070.1| DNA repair protein Ntg1, putative [Penicillium digitatum PHI26]
gi|425783221|gb|EKV21080.1| DNA repair protein Ntg1, putative [Penicillium digitatum Pd1]
Length = 419
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 84/130 (64%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +++GDIPS+ + L+ LPG+GPKMA+L ++ W GI VD HVHRI N
Sbjct: 272 IKAAALILRDQHNGDIPSTPEGLMALPGVGPKMAYLCLSAAWGKHLGIGVDVHVHRITNL 331
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE+TR+ LQ WLP E+W IN LLVG GQT+C P++ RCG C ++
Sbjct: 332 WGW-------NKTKTPEETRKALQSWLPVEKWHEINKLLVGLGQTVCLPVKRRCGDCDLA 384
Query: 121 --ELCPSAFK 128
+LC S +
Sbjct: 385 GLQLCKSEIR 394
>gi|156082960|ref|XP_001608964.1| base excision DNA repair protein, HhH-GPD family domain containing
protein [Babesia bovis T2Bo]
gi|154796214|gb|EDO05396.1| base excision DNA repair protein, HhH-GPD family domain containing
protein [Babesia bovis]
Length = 205
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 79/124 (63%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + L K+ G +P ++++L+ LPG+GPKM +LV+ +G+ + GI VD HVHRI NR
Sbjct: 77 IKQATEMILNKFGGKVPDNIEDLVTLPGVGPKMGNLVLQIGFKRINGIAVDLHVHRIANR 136
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV KT +PE+TR LQ +PK W +N LLVGFGQT+C P CG C +
Sbjct: 137 LQWV-------KTKTPEETRIKLQELIPKRLWAEVNHLLVGFGQTVCVAAGPGCGTCGAN 189
Query: 121 ELCP 124
CP
Sbjct: 190 TWCP 193
>gi|237842133|ref|XP_002370364.1| endonuclease III-like protein 1, putative [Toxoplasma gondii ME49]
gi|211968028|gb|EEB03224.1| endonuclease III-like protein 1, putative [Toxoplasma gondii ME49]
gi|221502817|gb|EEE28531.1| A/G-specific adenine glycosylase muty, putative [Toxoplasma gondii
VEG]
Length = 523
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/147 (44%), Positives = 89/147 (60%), Gaps = 11/147 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I L KY GDIP + +EL+ L G+GPKMA++ ++ GWN V+GI VD HVHRI NR
Sbjct: 383 LKEACQILLEKYGGDIPPTYEELVQLKGVGPKMANIAVHAGWNRVEGIAVDVHVHRITNR 442
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV +T +P +T+ LQ +L + W IN L VGFGQ IC P+ P C C S
Sbjct: 443 LNWV-------RTKTPIETQHALQKFLRRPLWGEINLLFVGFGQQICRPVNPLCSACKAS 495
Query: 121 ELCP----SAFKDSSSPSSKSRKSAQK 143
+ CP ++ K+ +P + S QK
Sbjct: 496 QWCPVGRKASRKEKKTPEIEVEVSPQK 522
>gi|261335240|emb|CBH18234.1| endonuclease III, putative [Trypanosoma brucei gambiense DAL972]
Length = 259
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G +P S + L+ LPG+GPKMAHL + + V GI VDTHVHRI R WV
Sbjct: 116 LQLHKGTVPRSYEGLVSLPGVGPKMAHLFLQEADSVVIGIGVDTHVHRIAQRFHWVPS-- 173
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
SPE TR+ L+ WLP + W IN +LVG GQTICTP PRC C S LCPSAF+
Sbjct: 174 ---TVKSPEDTRKALEAWLPAKYWGEINGMLVGLGQTICTPRIPRCSECPASGLCPSAFR 230
Query: 129 DSSSPSSKSRKS 140
++ + R S
Sbjct: 231 EAKGGVKRQRLS 242
>gi|302679652|ref|XP_003029508.1| hypothetical protein SCHCODRAFT_78397 [Schizophyllum commune H4-8]
gi|300103198|gb|EFI94605.1| hypothetical protein SCHCODRAFT_78397, partial [Schizophyllum
commune H4-8]
Length = 225
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 80/127 (62%), Gaps = 7/127 (5%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+DGD+P + EL L G+GPKMA+L + W GI VD HVHRI NRL W + P
Sbjct: 102 FDGDVPKTAKELQSLKGVGPKMAYLCLQAAWGINDGIGVDVHVHRITNRLKWHNPP---- 157
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE--LCPSAFKD 129
T++PE TR L+ WLPKE W IN +LVGFGQ IC P+ PRC C++ + LCPSA ++
Sbjct: 158 -TNTPEATRANLESWLPKELWGDINHMLVGFGQEICYPVNPRCDQCTLRDMGLCPSAQQN 216
Query: 130 SSSPSSK 136
S K
Sbjct: 217 VSPTKRK 223
>gi|221482289|gb|EEE20644.1| endonuclease III, putative [Toxoplasma gondii GT1]
Length = 523
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/147 (44%), Positives = 89/147 (60%), Gaps = 11/147 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I L KY GDIP + +EL+ L G+GPKMA++ ++ GWN V+GI VD HVHRI NR
Sbjct: 383 LKEACQILLEKYGGDIPPTYEELVQLKGVGPKMANIAVHAGWNRVEGIAVDVHVHRITNR 442
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV +T +P +T+ LQ +L + W IN L VGFGQ IC P+ P C C S
Sbjct: 443 LNWV-------RTKTPIETQHALQKFLRRPLWGEINLLFVGFGQQICRPVNPLCSACKAS 495
Query: 121 ELCP----SAFKDSSSPSSKSRKSAQK 143
+ CP ++ K+ +P + S QK
Sbjct: 496 QWCPVGRKASRKEKKTPEIEVEVSPQK 522
>gi|319790163|ref|YP_004151796.1| DNA-(apurinic or apyrimidinic site) lyase [Thermovibrio
ammonificans HB-1]
gi|317114665|gb|ADU97155.1| DNA-(apurinic or apyrimidinic site) lyase [Thermovibrio
ammonificans HB-1]
Length = 219
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+IA I + Y G +PS L+ELL LPG+G K A+LV+ G+ GICVDTHVHRI NR
Sbjct: 96 LKEIARILVEHYGGQVPSDLEELLKLPGVGRKTANLVVTQGFKK-PGICVDTHVHRIMNR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+V KT +PE+T L+ LPKE W+ IN LLV GQ IC PI P+C C +
Sbjct: 155 LGFV-------KTKTPEETEFALREKLPKEFWIEINDLLVALGQHICRPISPKCSQCPIE 207
Query: 121 ELC 123
LC
Sbjct: 208 HLC 210
>gi|400593176|gb|EJP61171.1| HhH-GPD superfamily base excision DNA repair protein [Beauveria
bassiana ARSEF 2860]
Length = 393
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 85/145 (58%), Gaps = 9/145 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I +++GDIP +++ L LPG+GPKM +L ++ W +GI VD HVHRI N
Sbjct: 237 IKKAAEILRDEWNGDIPDTIEGLTALPGVGPKMGYLCLSAAWGRTEGIGVDVHVHRITNM 296
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR LQ WLP++ W IN LLVG GQ +C P+ RCG C V
Sbjct: 297 WGW-------HKTKNPEETRLALQAWLPRDRWREINGLLVGLGQAVCVPVGQRCGSCDVG 349
Query: 120 -SELCPSAFKDSSSPSSKSRKSAQK 143
LC +A + + R+ ++
Sbjct: 350 LGGLCRAADRKKVALGRAEREVVKR 374
>gi|74025410|ref|XP_829271.1| endonuclease III [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70834657|gb|EAN80159.1| endonuclease III, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 259
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G +P S + L+ LPG+GPKMAHL + + V GI VDTHVHRI R WV
Sbjct: 116 LQLHKGTVPRSYEGLVSLPGVGPKMAHLFLQEADSVVIGIGVDTHVHRIAQRFHWVPS-- 173
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
SPE TR+ L+ WLP + W IN +LVG GQTICTP PRC C S LCPSAF+
Sbjct: 174 ---TVKSPEDTRKALEAWLPAKYWGEINGMLVGLGQTICTPRIPRCSECPASGLCPSAFR 230
Query: 129 DSSSPSSKSR 138
++ + R
Sbjct: 231 EAKGGVKRQR 240
>gi|163846363|ref|YP_001634407.1| DNA-(apurinic or apyrimidinic site) lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222524128|ref|YP_002568599.1| DNA-(apurinic or apyrimidinic site) lyase [Chloroflexus sp.
Y-400-fl]
gi|163667652|gb|ABY34018.1| DNA-(apurinic or apyrimidinic site) lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222448007|gb|ACM52273.1| DNA-(apurinic or apyrimidinic site) lyase [Chloroflexus sp.
Y-400-fl]
Length = 220
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 81/121 (66%), Gaps = 8/121 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I I L +Y+G++P+ LDELL LPG+G K A+LV+ G+ + GICVD HVHRICNR G+
Sbjct: 100 ICQILLERYNGEVPADLDELLKLPGVGRKTANLVVTAGFG-LPGICVDIHVHRICNRWGY 158
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V +T +PE+T L+ LP+ W+PIN LLV GQ IC P PRC +C + E+C
Sbjct: 159 V-------QTRTPEETEMALRARLPQRYWIPINRLLVTLGQNICHPTSPRCSICPIREVC 211
Query: 124 P 124
P
Sbjct: 212 P 212
>gi|406601198|emb|CCH47119.1| putative endonuclease [Wickerhamomyces ciferrii]
Length = 369
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 83/128 (64%), Gaps = 7/128 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I ++ DIP++L+ L+ LPG+GPKMA L + GWN GI VDTHVHR+ +
Sbjct: 210 LKKTAEILQNQFQSDIPNTLEGLISLPGVGPKMAFLTLQEGWNLNLGIGVDTHVHRLSKQ 269
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWV + PE TR+ L+ W+PKE W INPLLVGFGQ+IC P RC +CS+S
Sbjct: 270 WGWVPKT-----VKDPEITRKELEKWMPKEYWKEINPLLVGFGQSICLPRGRRCDLCSLS 324
Query: 121 --ELCPSA 126
+LC +
Sbjct: 325 STKLCSNV 332
>gi|408397046|gb|EKJ76197.1| hypothetical protein FPSE_03672 [Fusarium pseudograminearum CS3096]
Length = 400
Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 85/138 (61%), Gaps = 9/138 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I ++DGDIP +++ L+ LPG+GPKM +L ++V W +GI VD HVHRI N
Sbjct: 236 IKQTAEILRDQWDGDIPDTIEGLVSLPGVGPKMGYLCLSVAWGKHEGIGVDVHVHRITNL 295
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE+TR LQ WLP++ W IN LLVG GQ++C P+ +CG C +
Sbjct: 296 WGW-------HKTKNPEETRTTLQSWLPQDRWHEINHLLVGLGQSVCLPVGRKCGECDLG 348
Query: 121 --ELCPSAFKDSSSPSSK 136
LC +A + S K
Sbjct: 349 LQGLCKAADRAKVSAGRK 366
>gi|41223388|tpe|CAD59973.1| TPA: putative endonuclease III homologue [Trypanosoma brucei]
Length = 151
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G +P S + L+ LPG+GPKMAHL + + V GI VDTHVHRI R WV
Sbjct: 8 LQLHKGTVPRSYEGLVSLPGVGPKMAHLFLQEADSVVIGIGVDTHVHRIAQRFHWVPS-- 65
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
SPE TR+ L+ WLP + W IN +LVG GQTICTP PRC C S LCPSAF+
Sbjct: 66 ---TVKSPEDTRKALEAWLPAKYWGEINGMLVGLGQTICTPRIPRCSECPASGLCPSAFR 122
Query: 129 DSSSPSSKSR 138
++ + R
Sbjct: 123 EAKGGVKRQR 132
>gi|83771969|dbj|BAE62099.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 269
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y DIPS+ +EL+ LPG+G KMA+L M+ W +GI VD HVHRI N
Sbjct: 121 IKAAAIILRDQYQSDIPSTAEELMKLPGVGLKMAYLCMSAAWGKHEGIGVDVHVHRITNL 180
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE TR+ L+ WLPK++W IN LLVG GQT+C P+ +CG C +
Sbjct: 181 WGW-------NKTKTPEDTRKALESWLPKDKWHEINKLLVGLGQTVCLPVGRKCGDCDLA 233
Query: 120 -SELCPSAFK 128
++LC S +
Sbjct: 234 GTKLCKSEIR 243
>gi|322710098|gb|EFZ01673.1| putative DNA repair protein NTG1 [Metarhizium anisopliae ARSEF 23]
Length = 399
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I ++ GDIP ++ L LPG+GPKMAHL ++ W+ +GI VD HVHRI N
Sbjct: 233 IKQAAVILRDQWKGDIPDTIQGLTSLPGVGPKMAHLCLSAAWDRTEGIGVDVHVHRITNL 292
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS-- 118
GW KT +PE TR LQ WLP+++W IN LLVGFGQ +C P+ +CG C
Sbjct: 293 WGW-------NKTKNPEDTRRALQSWLPRDKWREINWLLVGFGQAVCLPVGRKCGDCDLG 345
Query: 119 VSELCPSAFK 128
++ LC +A +
Sbjct: 346 LNGLCKAAER 355
>gi|325969884|ref|YP_004246075.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta globus
str. Buddy]
gi|324025122|gb|ADY11881.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta globus
str. Buddy]
Length = 220
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 83/124 (66%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ I+ I +++Y+ ++P + ELL LPG+G K A+L +N+G+ + ICVD HVH+I NR
Sbjct: 97 IRLISEILISRYNANVPDTQAELLTLPGVGIKTANLTLNLGYQ-IDAICVDCHVHQIANR 155
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV +T +PEQT + LQL +P+ W+P+N LLV +GQ ICTP+ P C C
Sbjct: 156 LGWV-------ETKTPEQTEQALQLVMPRRFWIPLNELLVRYGQLICTPVSPFCSKCPEV 208
Query: 121 ELCP 124
E CP
Sbjct: 209 ERCP 212
>gi|346319387|gb|EGX88989.1| DNA repair protein Ntg1, putative [Cordyceps militaris CM01]
Length = 396
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 85/144 (59%), Gaps = 9/144 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I +++GDIP +++ L LPG+GPKM +L ++ W +GI VD HVHRI N
Sbjct: 227 IKQAAEILRDEWNGDIPDTIEGLTALPGVGPKMGYLCLSAAWGKTEGIGVDVHVHRITNM 286
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW T +PE TR LQ WLP++ W IN LLVG GQ +C P+ RCG C V
Sbjct: 287 WGW-------HATKNPEATRLALQSWLPRDRWREINGLLVGLGQAVCVPVGQRCGSCDVG 339
Query: 120 -SELCPSAFKDSSSPSSKSRKSAQ 142
S LC +A + + +R +A+
Sbjct: 340 LSGLCKAADRKKLALGRAARDAAK 363
>gi|426200731|gb|EKV50655.1| hypothetical protein AGABI2DRAFT_217472 [Agaricus bisporus var.
bisporus H97]
Length = 249
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 85/137 (62%), Gaps = 10/137 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A L +D D+P ++ EL LPG+GPKMA L ++V W+ GI VD+HVHRI N
Sbjct: 91 IKQTAQRLLHDFDSDVPKTVKELCSLPGVGPKMAILALHVAWDINTGIGVDSHVHRITNL 150
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW ++P T S E+TR LQ WLP E IN LLVGFGQ IC P +P C C +S
Sbjct: 151 LGWHNKP-----TKSAEETRLSLQSWLPAEFHREINGLLVGFGQVICLPTKPHCDTCKLS 205
Query: 121 E--LCPS---AFKDSSS 132
LCP+ AFK + S
Sbjct: 206 ARGLCPNARMAFKATDS 222
>gi|118579102|ref|YP_900352.1| HhH-GPD family protein [Pelobacter propionicus DSM 2379]
gi|118501812|gb|ABK98294.1| HhH-GPD family protein [Pelobacter propionicus DSM 2379]
Length = 218
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 78/120 (65%), Gaps = 8/120 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
IA +T++ G++P +++LL G+G K A+LV+ +G+ GICVDTHVHRICNRLG+
Sbjct: 98 IAHRLVTEFGGNVPDEMEDLLRFRGVGRKTANLVLTLGFGK-PGICVDTHVHRICNRLGY 156
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
VS T SPEQT L+ LP E W+ IN LLV FGQ C PI PRC C ++E C
Sbjct: 157 VS-------TRSPEQTEMALRAQLPGEYWIAINDLLVAFGQNHCHPISPRCTTCRIAEFC 209
>gi|209879798|ref|XP_002141339.1| HhH-GDP family base excision DNA repair protein [Cryptosporidium
muris RN66]
gi|209556945|gb|EEA06990.1| HhH-GDP family base excision DNA repair protein, putative
[Cryptosporidium muris RN66]
Length = 199
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 78/123 (63%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+++ I + Y G +P ++L+ LPGIGPKMA+LV+ +N V GI VDTH+HRI NR
Sbjct: 67 LKEVSKIIIESYSGKVPDKYEQLISLPGIGPKMANLVLQTAFNKVNGISVDTHMHRIFNR 126
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GWV KT SP +T+ ++ LP W +N + VGFGQ IC P+ P+C C +
Sbjct: 127 IGWV-------KTKSPNETKYHMEKRLPHSYWRLVNKVFVGFGQIICRPVNPKCSECVIR 179
Query: 121 ELC 123
LC
Sbjct: 180 ALC 182
>gi|342186290|emb|CCC95776.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 259
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 5/138 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + +++G +P S ++L+ LPG+GPKMAHL + + GI VDTHVHRI R
Sbjct: 108 IKAATRFIVERHNGMVPRSYEDLVGLPGVGPKMAHLFLQEADGVILGIGVDTHVHRIAQR 167
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV PE TR+ L+ WLP+ W IN LLVG GQTICTP P+C C +
Sbjct: 168 FRWVPS-----TVKGPEDTRKALESWLPRVYWGEINGLLVGLGQTICTPRLPQCSECGAN 222
Query: 121 ELCPSAFKDSSSPSSKSR 138
+LCPSAF+++ + + +
Sbjct: 223 KLCPSAFREARRGTKRQK 240
>gi|367024033|ref|XP_003661301.1| hypothetical protein MYCTH_2300528 [Myceliophthora thermophila ATCC
42464]
gi|347008569|gb|AEO56056.1| hypothetical protein MYCTH_2300528 [Myceliophthora thermophila ATCC
42464]
Length = 510
Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats.
Identities = 65/130 (50%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A I ++ DIP ++D L LPG+GPKMAHL M+ GW V+GI VD HVHRI
Sbjct: 302 LKQTAEILRDRFGSDIPPTIDGLTSLPGVGPKMAHLCMSATHGWGRVEGIGVDVHVHRIT 361
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW P R PE TR L+ WLP++ W IN LLVGFGQT+C P+ RCG C
Sbjct: 362 NLWGWQRPPTR-----GPEDTRRALESWLPRDRWKEINWLLVGFGQTVCLPVGRRCGDCE 416
Query: 119 VS--ELCPSA 126
+ LC SA
Sbjct: 417 LGLRGLCKSA 426
>gi|402077696|gb|EJT73045.1| DNA repair protein Ntg1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 585
Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 91/143 (63%), Gaps = 6/143 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A I ++ GDIP +++ L+ LPG+GPKMAHL M+ GW+ V+G+ VD HVHRI
Sbjct: 306 IKQAAEILRDRWAGDIPDTIEGLMSLPGVGPKMAHLCMSAPNGWDRVEGVGVDVHVHRIT 365
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW + G T +PE TR L+ WLP++ W IN LLVGFGQT+C P+ +CG C
Sbjct: 366 NLWGWNASSG--SPTKNPEATRAALESWLPRDRWREINWLLVGFGQTVCLPVGRKCGGCE 423
Query: 119 V--SELCPSAFKDSSSPSSKSRK 139
V + LC +A + + + R+
Sbjct: 424 VGLAGLCRAADRKKVAEGRRMRE 446
>gi|164663005|ref|XP_001732624.1| hypothetical protein MGL_0399 [Malassezia globosa CBS 7966]
gi|159106527|gb|EDP45410.1| hypothetical protein MGL_0399 [Malassezia globosa CBS 7966]
Length = 663
Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats.
Identities = 65/127 (51%), Positives = 82/127 (64%), Gaps = 10/127 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + I K+ GD+P ++DEL +PG+GPKMA L M NV GI VDTHVHRI NR
Sbjct: 489 LKTMTRILEEKHHGDVPQTVDELCEIPGVGPKMAFLQMQSMGLNV-GIGVDTHVHRISNR 547
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
LGW KT +PEQTR LQ WLP++ IN +VGFGQ IC P+ PRC +C +
Sbjct: 548 LGWC-------KTKTPEQTRLALQSWLPRDLHGVINKQMVGFGQVICLPVSPRCDLCYIG 600
Query: 120 -SELCPS 125
++LCPS
Sbjct: 601 QAKLCPS 607
>gi|255727965|ref|XP_002548908.1| hypothetical protein CTRG_03205 [Candida tropicalis MYA-3404]
gi|240133224|gb|EER32780.1| hypothetical protein CTRG_03205 [Candida tropicalis MYA-3404]
Length = 331
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 88/145 (60%), Gaps = 7/145 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK I L+++ GD+P ++ E++ LPG+GPKM +L + GW GI VD H+HR+
Sbjct: 176 IKKTCDILLSQHGGDVPKTISEIVKLPGLGPKMGYLFLQNGWGINDGIGVDVHLHRLAQM 235
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWVS K ++PE+ R L+ WLPKE W INPLLVGFGQ +C P P C +C++
Sbjct: 236 WGWVS-----PKANTPEKARIELEKWLPKEYWGQINPLLVGFGQVVCVPRSPNCDVCTLG 290
Query: 121 E--LCPSAFKDSSSPSSKSRKSAQK 143
+C SA K S+ S + QK
Sbjct: 291 RKGICKSANKKLLKDSTVSDERKQK 315
>gi|317149841|ref|XP_001823231.2| hypothetical protein AOR_1_1642114 [Aspergillus oryzae RIB40]
Length = 886
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y DIPS+ +EL+ LPG+G KMA+L M+ W +GI VD HVHRI N
Sbjct: 272 IKAAAIILRDQYQSDIPSTAEELMKLPGVGLKMAYLCMSAAWGKHEGIGVDVHVHRITNL 331
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE TR+ L+ WLPK++W IN LLVG GQT+C P+ +CG C +
Sbjct: 332 WGW-------NKTKTPEDTRKALESWLPKDKWHEINKLLVGLGQTVCLPVGRKCGDCDLA 384
Query: 120 -SELCPSAFK 128
++LC S +
Sbjct: 385 GTKLCKSEIR 394
>gi|296806475|ref|XP_002844047.1| DNA base excision repair N-glycosylase 1 [Arthroderma otae CBS
113480]
gi|238845349|gb|EEQ35011.1| DNA base excision repair N-glycosylase 1 [Arthroderma otae CBS
113480]
Length = 371
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 75/120 (62%), Gaps = 7/120 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I ++ DIPS++ L LPG+GPKMA+L M+ WN +GI VD HVHRI N
Sbjct: 217 IKATAEILRDEFGSDIPSTIQGLTRLPGVGPKMAYLCMSSAWNRHEGIGVDVHVHRITNL 276
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE TR L+ WLP+++W IN LLVG GQT+C P+ RC C +S
Sbjct: 277 WGW-------NKTKTPEATRAALESWLPRDKWHEINKLLVGLGQTVCLPVGRRCAECDLS 329
>gi|167515508|ref|XP_001742095.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778719|gb|EDQ92333.1| predicted protein [Monosiga brevicollis MX1]
Length = 224
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 80/126 (63%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A I L +++GD+P+++ EL+ LPG+G KMA + M V N V GI +D H HRI NR
Sbjct: 104 IHKTAKILLAEHNGDVPATIAELVKLPGVGMKMAQIAMAVAHNTVTGIGIDVHCHRIANR 163
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W QKT PE TR L+ WLP+E W IN LLVGFGQ IC P P+C C
Sbjct: 164 LAWCDT---AQKT--PEHTRVALERWLPRELWGEINLLLVGFGQQICLPRGPKCHSCLNR 218
Query: 121 ELCPSA 126
++CP+A
Sbjct: 219 DICPAA 224
>gi|406897553|gb|EKD41478.1| hypothetical protein ACD_73C00702G0003 [uncultured bacterium]
Length = 219
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ KI I L KY G++P LD+LL LPG+G K A+LV+ VG+++ GICVDTHVHRI NR
Sbjct: 96 IHKICDILLEKYKGEVPDHLDDLLELPGVGRKTANLVITVGFDD-YGICVDTHVHRITNR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G++ KT + ++T VL+ LPK+ W+ N LLV FGQ +C P+ P C +C ++
Sbjct: 155 WGFI-------KTKTADETESVLREKLPKKYWIRYNDLLVAFGQNLCGPVSPYCSLCPLA 207
Query: 121 ELCP 124
++CP
Sbjct: 208 KMCP 211
>gi|168022853|ref|XP_001763953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684692|gb|EDQ71092.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 226
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 92/141 (65%), Gaps = 10/141 (7%)
Query: 1 MKKIA-PICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWN-NVQGICVDTHVHRIC 58
MK IA + ++G +P+SL+EL+ LPG+GPK+A LV+ V + +G+ VDT+V R+C
Sbjct: 92 MKSIAQSLAAPPHNGAVPNSLEELMKLPGVGPKVALLVLWVAFGMGEEGLIVDTNVRRVC 151
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
+RLGWV ++PE TR L+ W+P+ W + L VGFGQ +C P+ P+C C
Sbjct: 152 SRLGWVP------ADATPELTRRTLESWMPRSMWADTSFLFVGFGQQVCKPLAPKCEGCK 205
Query: 119 VSELCPSAFKDSSSPSSKSRK 139
VS+LCPSAFK SP ++RK
Sbjct: 206 VSQLCPSAFK--QSPKRQTRK 224
>gi|403175797|ref|XP_003334554.2| endonuclease III [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|375171758|gb|EFP90135.2| endonuclease III [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 465
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 83/129 (64%), Gaps = 10/129 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K +A K++ D+P +LDEL+ L G+GPKMA L ++ W GI VDTHVHRI NR
Sbjct: 195 IKLMADDLFLKHESDVPKTLDELVALKGVGPKMAFLALSNAWAINLGIGVDTHVHRISNR 254
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ +TS PE TR L+ WLP++ + IN LLVGFGQ IC P+ P+C C V
Sbjct: 255 LGWL-------QTSDPEATRINLESWLPRDLFQEINHLLVGFGQVICLPVGPKCEDCYVG 307
Query: 121 E---LCPSA 126
+ LCPS+
Sbjct: 308 KVPGLCPSS 316
>gi|326437547|gb|EGD83117.1| hypothetical protein PTSG_12076 [Salpingoeca sp. ATCC 50818]
Length = 504
Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + + L + GDIP ++ +L+ LPG+G KMA + M V V GI VDTHVHRI NR
Sbjct: 262 LKGASTMILASFGGDIPQTIPDLIKLPGVGMKMATITMAVANKQVSGIGVDTHVHRIANR 321
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WV + T +PE TR L+ W+P+ W +N LLVGFGQTIC P +P+C C
Sbjct: 322 LRWV------RNTKTPEHTRVELERWMPRRLWGEVNLLLVGFGQTICQPRQPKCHECLNK 375
Query: 121 ELCPSA 126
+LCPS+
Sbjct: 376 DLCPSS 381
>gi|406868323|gb|EKD21360.1| HhH-GPD superfamily base excision DNA repair protein [Marssonina
brunnea f. sp. 'multigermtubi' MB_m1]
Length = 441
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +Y+GDIP +++ L+ LPG+GPKM +L ++ W +GI VD HVHRI N
Sbjct: 233 IKATAEILRDQYNGDIPDTIEGLMSLPGVGPKMGYLCLSAAWGKHEGIGVDVHVHRITNL 292
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT PEQ+R LQ WLPKE W IN +LVG GQTIC P+ +CG C +
Sbjct: 293 WGW-------HKTKGPEQSRIALQSWLPKELWHEINWVLVGLGQTICLPVGRKCGECELG 345
Query: 121 --ELCPSAFK 128
LC +A +
Sbjct: 346 LKGLCKAAER 355
>gi|290983237|ref|XP_002674335.1| predicted protein [Naegleria gruberi]
gi|284087925|gb|EFC41591.1| predicted protein [Naegleria gruberi]
Length = 316
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 75/110 (68%), Gaps = 7/110 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ I L KYD DIP ++ EL LPG+GPKMA+L M+ GI VDTHVHRI NR
Sbjct: 195 LKKVCKILLEKYDSDIPKTVKELCDLPGVGPKMAYLCMSSALKQTVGIGVDTHVHRISNR 254
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPI 110
L WV+ T +PEQTR L+ ++P+EEW IN +LVGFGQT+C P+
Sbjct: 255 LEWVN-------TKTPEQTRMKLEEFVPQEEWDVINHMLVGFGQTVCKPV 297
>gi|116180194|ref|XP_001219946.1| hypothetical protein CHGG_00725 [Chaetomium globosum CBS 148.51]
gi|88185022|gb|EAQ92490.1| hypothetical protein CHGG_00725 [Chaetomium globosum CBS 148.51]
Length = 977
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/142 (44%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K A + ++ DIP ++ L LPG+GPKMAHL M+ GWN V+GI VD HVHRI
Sbjct: 704 LKTTAALLRDNFNSDIPPTIAGLTSLPGVGPKMAHLCMSAPNGWNRVEGIGVDVHVHRIT 763
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW + R +PE+TR L+ WLP++ W IN LLVG GQ++C P+ RCG C
Sbjct: 764 NLWGWQAPASR-----TPEETRAALESWLPRDRWREINWLLVGLGQSVCLPVGRRCGDCE 818
Query: 119 VS--ELCPSAFKDSSSPSSKSR 138
V LC SA + + + R
Sbjct: 819 VGLRGLCKSADRAKVAEGKRRR 840
>gi|258573229|ref|XP_002540796.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901062|gb|EEP75463.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 655
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 85/138 (61%), Gaps = 9/138 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A + +D DIP + +L+ LPG+GPKMA+L M+ W GI VD HVHRI N
Sbjct: 510 LQTTASLLQAHHDSDIPRTAADLMSLPGVGPKMAYLCMSSAWGVDDGIGVDVHVHRITNL 569
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GWV +T +PE+TR VL+ WLP+++W IN LLVG GQT+C P+ RCG C++
Sbjct: 570 WGWV-------RTKTPEETRVVLEAWLPRDKWREINWLLVGLGQTVCLPVGRRCGECALA 622
Query: 120 -SELCPSAFKDSSSPSSK 136
+ LC K ++ S K
Sbjct: 623 GTGLCKGEIKGKAAVSVK 640
>gi|343425282|emb|CBQ68818.1| related to NTG1-DNA repair protein [Sporisorium reilianum SRZ2]
Length = 525
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 68/128 (53%), Positives = 82/128 (64%), Gaps = 10/128 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I + + GD+P ++DEL LPG+GPKMA L ++ V GI VDTHVHR+ NR
Sbjct: 328 LKSAARILASDFGGDVPRTVDELCSLPGVGPKMAFLALSSMGIQV-GIGVDTHVHRLTNR 386
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW T +PEQTR LQ WLP E IN LLVGFGQ IC P+ PRC +CSV+
Sbjct: 387 LGW-------HTTRTPEQTRLNLQSWLPAELHGEINRLLVGFGQVICVPVGPRCDLCSVA 439
Query: 121 E--LCPSA 126
LCPSA
Sbjct: 440 AAGLCPSA 447
>gi|444314257|ref|XP_004177786.1| hypothetical protein TBLA_0A04740 [Tetrapisispora blattae CBS 6284]
gi|387510825|emb|CCH58267.1| hypothetical protein TBLA_0A04740 [Tetrapisispora blattae CBS 6284]
Length = 447
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/138 (41%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A ++D DIP+ +D LL LPG+GPKM +L ++ W + GICVD HVHR+
Sbjct: 243 IKETAKELQERFDSDIPTDIDGLLSLPGVGPKMGYLALHKAWGKLDGICVDVHVHRLSKL 302
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +K+ +PE TR+ LQ WLP+ W IN +LVGFGQ IC RC +C +
Sbjct: 303 FNWVD----PKKSKTPEHTRKALQEWLPRSLWYEINTVLVGFGQVICMSKGRRCDICLAN 358
Query: 121 ELCPSAFKDSSSPSSKSR 138
+C + K + SR
Sbjct: 359 TVCNAVDKKLVAKGFNSR 376
>gi|119191666|ref|XP_001246439.1| hypothetical protein CIMG_00210 [Coccidioides immitis RS]
gi|392864330|gb|EAS34840.2| DNA repair protein Ntg1 [Coccidioides immitis RS]
Length = 451
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A I + Y+ DIP + +L+ LPG+GPKMA+L M+ W GI VD HVHRI N
Sbjct: 306 LRSTASILQSHYNSDIPRTAADLMALPGVGPKMAYLCMSSAWGVDDGIGVDVHVHRITNL 365
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GWV +T +PE+TR +L+ WLP+E+W IN LLVG GQT+C P+ RC C++
Sbjct: 366 WGWV-------RTKTPEETRVLLEAWLPREKWREINWLLVGLGQTVCLPVGRRCWECALA 418
Query: 120 -SELCPSAFK 128
+ LC + K
Sbjct: 419 GTGLCRAEIK 428
>gi|255713108|ref|XP_002552836.1| KLTH0D02552p [Lachancea thermotolerans]
gi|238934216|emb|CAR22398.1| KLTH0D02552p [Lachancea thermotolerans CBS 6340]
Length = 383
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 75/126 (59%), Gaps = 4/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + +DGD+P + L+ LPG+GPKM +L + W V GI VD HV R+C
Sbjct: 206 IKKTIELLRDNFDGDMPPDIAGLVSLPGVGPKMGYLALQKAWGKVDGIGVDVHVDRLCKM 265
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV K SPE TR++L+ WLP E W INP+LVGFGQ IC P RC +C S
Sbjct: 266 WKWVDP----SKAKSPEHTRKLLEEWLPYEYWYEINPVLVGFGQVICLPRGKRCDLCMAS 321
Query: 121 ELCPSA 126
++C +A
Sbjct: 322 DVCNAA 327
>gi|378727145|gb|EHY53604.1| endonuclease III [Exophiala dermatitidis NIH/UT8656]
Length = 468
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I +++ DIP +++ L+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 294 IKQAALILKERFNSDIPDTIEGLVSLPGVGPKMAYLCMSAAWGRDEGIGVDVHVHRITNL 353
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW KT +PE+TR L+ WLP+++W IN +LVG GQT+C P+ +CG C ++
Sbjct: 354 WGW-------HKTKTPEETRACLEAWLPRDKWHEINKMLVGLGQTVCLPVGRKCGECDLA 406
>gi|160902834|ref|YP_001568415.1| endonuclease III [Petrotoga mobilis SJ95]
gi|160360478|gb|ABX32092.1| endonuclease III [Petrotoga mobilis SJ95]
Length = 210
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 81/122 (66%), Gaps = 8/122 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I+ I + KY+G +P L+EL+ LPG+G K A++V+ V + + + VDTHVHRI NRLGW
Sbjct: 88 ISKILIEKYNGKVPDELEELIELPGVGRKTANIVLYVSFGK-EALAVDTHVHRISNRLGW 146
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V KT +PE+T E L+ +P E W P+N +V FGQ IC PI P+C C ++E+C
Sbjct: 147 V-------KTKTPEETEEQLKKIIPSELWGPLNGSMVNFGQKICKPISPKCDECFLNEVC 199
Query: 124 PS 125
P+
Sbjct: 200 PA 201
>gi|163785187|ref|ZP_02179872.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
gi|159879544|gb|EDP73363.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
Length = 218
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I+ I L KY+G +P +L++LL G+G K A+LV++ G+N ICVD HVHRI NR
Sbjct: 95 IKDISKIILEKYNGKVPDTLEKLLKFKGVGRKTANLVLSEGFNK-PAICVDIHVHRISNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+V KT +PE+T L LP++ W IN LLVGFGQTIC P+ P C C V
Sbjct: 154 LGFV-------KTKTPEKTEFALMEKLPEKYWNKINKLLVGFGQTICKPVSPYCSKCPVE 206
Query: 121 ELC 123
LC
Sbjct: 207 NLC 209
>gi|46137371|ref|XP_390377.1| hypothetical protein FG10201.1 [Gibberella zeae PH-1]
Length = 465
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 82/134 (61%), Gaps = 9/134 (6%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A I ++DGDIP +++ L+ LPG+GPKM +L ++V W +GI VD HVHRI N GW
Sbjct: 305 AEILRDQWDGDIPDTIEGLVSLPGVGPKMGYLCLSVAWGKHEGIGVDVHVHRITNLWGW- 363
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS--EL 122
KT +PE+TR LQ WLP++ W IN LLVG GQ++C P+ +CG C + L
Sbjct: 364 ------HKTKNPEETRTTLQSWLPQDRWHEINHLLVGLGQSVCLPVGRKCGECDLGLQGL 417
Query: 123 CPSAFKDSSSPSSK 136
C +A + S K
Sbjct: 418 CKAADRAKVSAGRK 431
>gi|345567609|gb|EGX50538.1| hypothetical protein AOL_s00075g174 [Arthrobotrys oligospora ATCC
24927]
Length = 513
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 77/119 (64%), Gaps = 6/119 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A + K+DGDIP+ +++++ L G+GPKM++L+ W+ GI VD HVHRI N
Sbjct: 296 IKKAAVVLRDKFDGDIPTEVEDMMSLDGVGPKMSYLLEQCAWDKSTGIGVDVHVHRIANM 355
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
WV Q +S PE TR LQ WLPKE W IN LLVGFGQ++C P RC +C++
Sbjct: 356 FKWVPQ------SSEPEVTRVYLQSWLPKELWREINWLLVGFGQSVCLPRGRRCDLCTL 408
>gi|320036319|gb|EFW18258.1| DNA repair protein Ntg1 [Coccidioides posadasii str. Silveira]
Length = 449
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 82/130 (63%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A I + Y+ DIP + +L+ LPG+GPKMA+L M+ W GI VD HVHRI N
Sbjct: 304 LRSTASILQSHYNSDIPRTAADLMALPGVGPKMAYLCMSSAWGVDDGIGVDVHVHRITNL 363
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GWV +T +PE+TR +L+ WLP+E+W IN LLVG GQT+C P+ RC C++
Sbjct: 364 WGWV-------RTKTPEETRVLLEAWLPREKWREINWLLVGLGQTVCLPVGRRCWECALA 416
Query: 120 -SELCPSAFK 128
+ LC + K
Sbjct: 417 GTGLCRAEIK 426
>gi|325294609|ref|YP_004281123.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065057|gb|ADY73064.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 218
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I + + KY+G +P +DELL LPG+G K A+LV+ +G+ GICVDTHVHRI NR
Sbjct: 95 IKEICKVLIEKYNGKVPDEIDELLKLPGVGRKTANLVVTLGYGK-PGICVDTHVHRISNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+V+ T +PE+T L+ LPK+ W+ IN LLV GQ IC P P+C C +
Sbjct: 154 LGYVN-------TKTPEETEFALREKLPKDYWIEINDLLVSLGQHICHPTSPKCSQCPIE 206
Query: 121 ELC 123
+ C
Sbjct: 207 KYC 209
>gi|328354254|emb|CCA40651.1| endonuclease III [Komagataella pastoris CBS 7435]
Length = 731
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 60/143 (41%), Positives = 88/143 (61%), Gaps = 9/143 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +++GDIP ++ ++ LPG+GPKM +L++ W GI VD HV R+ N
Sbjct: 570 LKSAAVIVKEQFNGDIPKNIKQITALPGVGPKMGYLLLQDAWGINDGIGVDVHVDRLANM 629
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV+ T +PEQTR L+ W+P+E W INP+LVGFGQ ICTP RC +CS++
Sbjct: 630 WKWVN-------TKTPEQTRLALEKWVPRELWQEINPVLVGFGQVICTPRGRRCDVCSLA 682
Query: 121 --ELCPSAFKDSSSPSSKSRKSA 141
+LC + + S S + ++SA
Sbjct: 683 SKKLCNNIDRGIISKSRREKESA 705
>gi|448104103|ref|XP_004200201.1| Piso0_002778 [Millerozyma farinosa CBS 7064]
gi|359381623|emb|CCE82082.1| Piso0_002778 [Millerozyma farinosa CBS 7064]
Length = 364
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 78/126 (61%), Gaps = 8/126 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K A I D+P ++DE+ LPG+GPKMA+L++ GWN GI VD HVHR+
Sbjct: 205 KSAAILKETAGSDVPQTVDEITRLPGVGPKMAYLLIQRGWNINDGIGVDVHVHRLAQMWR 264
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS-- 120
WV K+ SPE+TR LQ WLPK+ W INPLLVGFGQ +C P C +C+++
Sbjct: 265 WVP------KSDSPERTRLALQAWLPKKFWPEINPLLVGFGQVVCVPRAGNCDICTLATK 318
Query: 121 ELCPSA 126
LCPSA
Sbjct: 319 RLCPSA 324
>gi|321260781|ref|XP_003195110.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus gattii
WM276]
gi|317461583|gb|ADV23323.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
gattii WM276]
Length = 452
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 14 GDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKT 73
GD+P +++ L L G+GPKMA L + W+ GI VD HVHRI NRL W P T
Sbjct: 238 GDVPKTVEGLCKLKGVGPKMAFLALQCAWDINAGIGVDVHVHRITNRLKWHRPP-----T 292
Query: 74 SSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV--SELCPSAFKDSS 131
S+PEQTR LQ WLP PINPL+VGFGQ IC P+ PRC +C + E+CPS K ++
Sbjct: 293 STPEQTRLNLQSWLPPHLHKPINPLMVGFGQVICLPVGPRCDICLLGQKEICPSRVKGAN 352
Query: 132 SPSSK 136
S K
Sbjct: 353 SKGRK 357
>gi|405121665|gb|AFR96433.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. grubii H99]
Length = 452
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 78/126 (61%), Gaps = 7/126 (5%)
Query: 14 GDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKT 73
GD+P +++ L L G+GPKMA L + W+ GI VD HVHRI NRL W P T
Sbjct: 238 GDVPKTVEGLCKLKGVGPKMAFLALQCAWDINAGIGVDVHVHRITNRLKWHRPP-----T 292
Query: 74 SSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV--SELCPSAFKDSS 131
S+PEQTR LQ WLP PINPLLVGFGQ IC P+ PRC +C + E+CPS K ++
Sbjct: 293 STPEQTRLNLQSWLPPHLHKPINPLLVGFGQVICLPVGPRCDICLLGQKEICPSRVKGTT 352
Query: 132 SPSSKS 137
+ K
Sbjct: 353 AKGRKE 358
>gi|401623702|gb|EJS41791.1| ntg2p [Saccharomyces arboricola H-6]
Length = 381
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 4/125 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + + +D DIP ++ LL LPG+GPKM +L + GW + GICVD HVHR+C+
Sbjct: 218 IKRTAQLLVANFDSDIPYDIEGLLSLPGVGPKMGYLTLQKGWGLIAGICVDVHVHRLCSM 277
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV K + E TR+ LQ WLP W IN +LVGFGQ IC RC +C V+
Sbjct: 278 WNWVDAV----KCKTAEHTRKELQTWLPHSLWYEINTVLVGFGQLICMARSKRCDLCLVN 333
Query: 121 ELCPS 125
+C +
Sbjct: 334 NICNA 338
>gi|294658207|ref|XP_460548.2| DEHA2F04180p [Debaryomyces hansenii CBS767]
gi|202952958|emb|CAG88864.2| DEHA2F04180p [Debaryomyces hansenii CBS767]
Length = 375
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 8/144 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK I + +D DIP ++ +++ LPG+GPKM L++ GWN GI VD H+HR+
Sbjct: 219 IKKACAILQSNFDSDIPKNITDIVTLPGVGPKMGFLLLQRGWNINDGIGVDVHIHRLAQM 278
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS-- 118
GWV+ K+ PE TR L+ WLPK+ W INPLLVGFGQ IC P C +C+
Sbjct: 279 WGWVA------KSEKPESTRTELESWLPKKFWGDINPLLVGFGQVICVPKASNCDICTLG 332
Query: 119 VSELCPSAFKDSSSPSSKSRKSAQ 142
+++LC S+ K + S + A+
Sbjct: 333 INKLCKSSNKKLLNASMTDARRAK 356
>gi|303313429|ref|XP_003066726.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240106388|gb|EER24581.1| HhH-GPD family base excision DNA repair protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 449
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 81/130 (62%), Gaps = 9/130 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A I + Y+ DIP + +L+ LPG+GPKMA+L M+ W GI VD HVHRI N
Sbjct: 304 LRSTASILQSHYNSDIPRTAADLMALPGVGPKMAYLCMSSAWGVDDGIGVDVHVHRITNL 363
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GWV +T +PE+TR +L+ WLP+E+W IN LLVG GQT+C P+ RC C +
Sbjct: 364 WGWV-------RTKTPEETRVLLEAWLPREKWREINWLLVGLGQTVCLPVGRRCWECVLA 416
Query: 120 -SELCPSAFK 128
+ LC + K
Sbjct: 417 GTGLCRAEIK 426
>gi|389628416|ref|XP_003711861.1| DNA repair protein Ntg1 [Magnaporthe oryzae 70-15]
gi|351644193|gb|EHA52054.1| DNA repair protein Ntg1 [Magnaporthe oryzae 70-15]
gi|440470899|gb|ELQ39938.1| DNA base excision repair N-glycosylase 1 [Magnaporthe oryzae Y34]
gi|440486070|gb|ELQ65970.1| DNA base excision repair N-glycosylase 1 [Magnaporthe oryzae P131]
Length = 449
Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats.
Identities = 64/130 (49%), Positives = 82/130 (63%), Gaps = 11/130 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A I KY+ DIP ++ L LPG+GPKMAHL M+ GWN V+GI VD HVHRI
Sbjct: 245 IKQAAVILRDKYNSDIPDTIAGLTSLPGVGPKMAHLCMSAPNGWNRVEGIGVDVHVHRIT 304
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW KT++PE TR L+ WLP++ W IN LLVG GQT+C P+ +CG C
Sbjct: 305 NLWGW-------NKTNNPEATRAALESWLPRDRWREINWLLVGLGQTVCLPVGRKCGDCE 357
Query: 119 VS--ELCPSA 126
+ LC +A
Sbjct: 358 LGLRGLCRAA 367
>gi|367017866|ref|XP_003683431.1| hypothetical protein TDEL_0H03610 [Torulaspora delbrueckii]
gi|359751095|emb|CCE94220.1| hypothetical protein TDEL_0H03610 [Torulaspora delbrueckii]
Length = 406
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 85/143 (59%), Gaps = 5/143 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I + ++ DIP+ L +L LPG+GPKM L + W + GI VD HVHR+CN
Sbjct: 217 VKQTAKILVEQFQSDIPTDLVGILSLPGVGPKMGLLALQRAWGKMDGIGVDVHVHRLCNM 276
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWVS +K + + TR+ L+ WLPK W INPLLVGFGQ IC RC +C +
Sbjct: 277 WGWVS-----KKCKTADHTRKDLESWLPKPLWYEINPLLVGFGQVICMSRGKRCDLCLAN 331
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
++C K +++ ++S ++
Sbjct: 332 DICNDVDKKVMIKAAQEKRSDER 354
>gi|58269828|ref|XP_572070.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. neoformans JEC21]
gi|134113763|ref|XP_774466.1| hypothetical protein CNBG1120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257104|gb|EAL19819.1| hypothetical protein CNBG1120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228306|gb|AAW44763.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 452
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 78/126 (61%), Gaps = 7/126 (5%)
Query: 14 GDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKT 73
GD+P +++ L L G+GPKMA L + W+ GI VD HVHRI NRL W P T
Sbjct: 238 GDVPKTVEGLCKLKGVGPKMAFLALQCAWDINAGIGVDVHVHRITNRLKWHRPP-----T 292
Query: 74 SSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV--SELCPSAFKDSS 131
S+PEQTR LQ WLP PINPL+VGFGQ IC P+ PRC +C + E+CPS K ++
Sbjct: 293 STPEQTRLNLQSWLPPHLHKPINPLMVGFGQVICLPVGPRCDICLLGQKEICPSRVKGAN 352
Query: 132 SPSSKS 137
+ K
Sbjct: 353 AKGRKE 358
>gi|156839963|ref|XP_001643667.1| hypothetical protein Kpol_1040p22 [Vanderwaltozyma polyspora DSM
70294]
gi|156114287|gb|EDO15809.1| hypothetical protein Kpol_1040p22 [Vanderwaltozyma polyspora DSM
70294]
Length = 429
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 4/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I K++ DIP++++ LL LPG+GPKM +L + W + GICVD HVHR+
Sbjct: 250 LKETALILKEKHNSDIPTNIEGLLALPGVGPKMGYLTLQKAWGKIDGICVDVHVHRLAKM 309
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV + +K +PE TR+ L+ WLP++ W IN +LVGFGQ IC RC +C +
Sbjct: 310 WKWVDE----KKCKTPEHTRKELESWLPRQLWYEINSVLVGFGQVICMSRGKRCDICLAN 365
Query: 121 ELCPSAFK 128
++C + K
Sbjct: 366 DVCNARDK 373
>gi|241949395|ref|XP_002417420.1| DNA base excision repair N-glycosylase, putative; DNA-(apurinic or
apyrimidinic site) lyase, putative; endonuclease III
homolog, putative [Candida dubliniensis CD36]
gi|223640758|emb|CAX45072.1| DNA base excision repair N-glycosylase, putative [Candida
dubliniensis CD36]
Length = 320
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 80/130 (61%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK I + + GDIP +++E++ LPG+GPKM L++ W G+ VD H+HR+
Sbjct: 166 IKKTCSILMENFGGDIPKTIEEIVALPGVGPKMGFLLLQSAWGINAGVGVDVHLHRLALM 225
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWVS QK ++PE+ R LQ WLPK W INPL+VGFGQ IC P C +CS++
Sbjct: 226 WGWVS-----QKANTPEKARLELQEWLPKNYWADINPLVVGFGQVICVPRAANCDICSLA 280
Query: 121 E--LCPSAFK 128
LC +A K
Sbjct: 281 RDGLCKNANK 290
>gi|254573634|ref|XP_002493926.1| DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in
base excision repair [Komagataella pastoris GS115]
gi|238033725|emb|CAY71747.1| DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in
base excision repair [Komagataella pastoris GS115]
Length = 359
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 88/143 (61%), Gaps = 9/143 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I +++GDIP ++ ++ LPG+GPKM +L++ W GI VD HV R+ N
Sbjct: 198 LKSAAVIVKEQFNGDIPKNIKQITALPGVGPKMGYLLLQDAWGINDGIGVDVHVDRLANM 257
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV+ T +PEQTR L+ W+P+E W INP+LVGFGQ ICTP RC +CS++
Sbjct: 258 WKWVN-------TKTPEQTRLALEKWVPRELWQEINPVLVGFGQVICTPRGRRCDVCSLA 310
Query: 121 --ELCPSAFKDSSSPSSKSRKSA 141
+LC + + S S + ++SA
Sbjct: 311 SKKLCNNIDRGIISKSRREKESA 333
>gi|346970075|gb|EGY13527.1| DNA base excision repair N-glycosylase [Verticillium dahliae
VdLs.17]
Length = 286
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 75/122 (61%), Gaps = 9/122 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + +D DIP ++D L LPG+GPKMAHL ++ W +GI VD HVHRI N
Sbjct: 103 IKQAALLLRDNFDADIPPTIDGLTSLPGVGPKMAHLCLSAAWGRTEGIGVDVHVHRITNM 162
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPI--RPRCGMCS 118
GW KT+SPE +R L+ WLP++ W IN LLVG GQT+C P R RCG C
Sbjct: 163 WGW-------HKTASPEASRLALEAWLPRDRWHEINTLLVGLGQTVCPPQAGRRRCGECD 215
Query: 119 VS 120
+
Sbjct: 216 LG 217
>gi|260947100|ref|XP_002617847.1| hypothetical protein CLUG_01306 [Clavispora lusitaniae ATCC 42720]
gi|238847719|gb|EEQ37183.1| hypothetical protein CLUG_01306 [Clavispora lusitaniae ATCC 42720]
Length = 384
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/143 (41%), Positives = 85/143 (59%), Gaps = 7/143 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + + K++ DIP ++ + + LPG+GPKM HL++ GW GI VD H+HR+
Sbjct: 221 IKKASELLNEKFNADIPKNIKDTISLPGVGPKMGHLLLQAGWRINSGIGVDVHLHRLAQM 280
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWV K+ PE TR L+ WLPK+ W INPLLVGFGQT+C P C +C+++
Sbjct: 281 WGWVP------KSDKPESTRLALEDWLPKKYWSDINPLLVGFGQTVCVPNAGNCDVCTLA 334
Query: 121 E-LCPSAFKDSSSPSSKSRKSAQ 142
LC A K S+ + + A+
Sbjct: 335 AGLCSKANKKLSNAAVTEARLAK 357
>gi|338731336|ref|YP_004660728.1| endonuclease III [Thermotoga thermarum DSM 5069]
gi|335365687|gb|AEH51632.1| endonuclease III [Thermotoga thermarum DSM 5069]
Length = 208
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 78/121 (64%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ I L KY+G +PS LDELL LPG+G K A++V+ G++ + I VDTHVHRI NRLG
Sbjct: 88 EVSKIILEKYNGKVPSDLDELLKLPGVGRKTANIVLFQGFS-IPAIAVDTHVHRISNRLG 146
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V KT +PEQT E L LPK W PIN +V FG+ IC P PRC C S+
Sbjct: 147 FV-------KTKTPEQTEEELSKVLPKRLWGPINVAMVNFGRNICLPRNPRCEKCPFSKE 199
Query: 123 C 123
C
Sbjct: 200 C 200
>gi|392573095|gb|EIW66237.1| hypothetical protein TREMEDRAFT_23302, partial [Tremella
mesenterica DSM 1558]
Length = 237
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 76/114 (66%), Gaps = 7/114 (6%)
Query: 14 GDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKT 73
GD+P +L+ L L G+GPKMA L + W+ GI VD HVHRI NRL W K +T
Sbjct: 129 GDVPKTLEGLCELKGVGPKMAFLCLQAAWDINAGIGVDVHVHRITNRLRW-----HKPQT 183
Query: 74 SSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS--ELCPS 125
++PEQTR LQ WLP E PINP+LVGFGQ IC P+ PRC +C ++ +LCPS
Sbjct: 184 TTPEQTRLNLQSWLPMEYHRPINPMLVGFGQIICLPVGPRCDICLLAKEKLCPS 237
>gi|254581382|ref|XP_002496676.1| ZYRO0D05566p [Zygosaccharomyces rouxii]
gi|238939568|emb|CAR27743.1| ZYRO0D05566p [Zygosaccharomyces rouxii]
Length = 360
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 77/126 (61%), Gaps = 4/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I + +D DIP+ L +L LPG+GPKM L + W + GI VD HV R+C
Sbjct: 204 VKQMAQILVNTFDSDIPTDLPGILSLPGVGPKMGILALQKAWGKMDGIGVDLHVDRLCKM 263
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWV +K +PE TR+ L+ WLP+E W INPLLVGFGQ IC RC +C +
Sbjct: 264 WGWVDA----KKCKTPEHTRKQLESWLPRELWYEINPLLVGFGQVICMSRGKRCDLCLAN 319
Query: 121 ELCPSA 126
++C +
Sbjct: 320 DVCNAV 325
>gi|367036841|ref|XP_003648801.1| hypothetical protein THITE_2106660 [Thielavia terrestris NRRL 8126]
gi|346996062|gb|AEO62465.1| hypothetical protein THITE_2106660 [Thielavia terrestris NRRL 8126]
Length = 465
Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 61/130 (46%), Positives = 80/130 (61%), Gaps = 11/130 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV--GWNNVQGICVDTHVHRIC 58
+K+ A I + + DIP ++ L LPG+GPKMAHL M+ GW V+G+ VD HVHRI
Sbjct: 265 LKQTASILQSDFASDIPPTVAGLCSLPGVGPKMAHLCMSAANGWGRVEGVGVDVHVHRIT 324
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
N GW T +PE+TR L+ WLP++ W IN LLVGFGQT+C P+ RCG C
Sbjct: 325 NLWGW-------HATRTPEETRRALEAWLPRDRWREINWLLVGFGQTVCLPVGRRCGDCE 377
Query: 119 VS--ELCPSA 126
+ LC +A
Sbjct: 378 LGLRGLCRAA 387
>gi|448100402|ref|XP_004199342.1| Piso0_002778 [Millerozyma farinosa CBS 7064]
gi|359380764|emb|CCE83005.1| Piso0_002778 [Millerozyma farinosa CBS 7064]
Length = 362
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 8/126 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K A I D+P ++DE+ LPG+GPKMA+L++ GWN GI VD HVHR+
Sbjct: 203 KSAAILKETAGSDVPQTVDEITRLPGVGPKMAYLLIQRGWNINDGIGVDVHVHRLAQMWR 262
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS-- 120
WV K+ +PE+TR LQ WLP++ W INPLLVGFGQ +C P C +C+++
Sbjct: 263 WVP------KSDNPERTRLALQAWLPRKFWPEINPLLVGFGQVVCVPRAGNCDICTLATK 316
Query: 121 ELCPSA 126
LCPSA
Sbjct: 317 RLCPSA 322
>gi|149247468|ref|XP_001528146.1| hypothetical protein LELG_00666 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448100|gb|EDK42488.1| hypothetical protein LELG_00666 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 408
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 88/142 (61%), Gaps = 8/142 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K I + ++GDIP ++ E++ LPG+GPKM +L++ GW GI VD H+HR+
Sbjct: 253 IQKACQILINDFNGDIPKTIQEIVKLPGVGPKMGYLLLQCGWGINLGIGVDVHLHRLAEM 312
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV+ K S+PE+ R L+ WLPK+ W+ +NPL+VGFGQ IC P P C +CS+
Sbjct: 313 WHWVTP-----KASTPEKCRLELESWLPKKYWIDVNPLMVGFGQVICVPRAPNCDICSLG 367
Query: 121 E--LCPSAFKD-SSSPSSKSRK 139
LC +A K +P S +RK
Sbjct: 368 RKGLCKAADKRLLKTPISDARK 389
>gi|320582064|gb|EFW96282.1| DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase [Ogataea
parapolymorpha DL-1]
Length = 383
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/132 (44%), Positives = 81/132 (61%), Gaps = 8/132 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I KY+G+IP +++E+ PG+GPKM L++ + WN GI VDTH+ R+
Sbjct: 221 IKQTANILHEKYNGEIPRTIEEITSFPGVGPKMGFLLLQIAWNINTGIGVDTHMQRMAKI 280
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQ--LWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
WV P K SPE R + LW KEEW INP+LVGFGQ +C P RPRC +C+
Sbjct: 281 FKWV--PA--SKNMSPEYVRRCFESMLWDHKEEWSRINPILVGFGQVVCLPQRPRCDVCT 336
Query: 119 VSE--LCPSAFK 128
+S +CP+ K
Sbjct: 337 LSRTGICPAVDK 348
>gi|242221333|ref|XP_002476417.1| predicted protein [Postia placenta Mad-698-R]
gi|220724324|gb|EED78375.1| predicted protein [Postia placenta Mad-698-R]
Length = 258
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 82/131 (62%), Gaps = 11/131 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWN----NVQGICVDTHVHR 56
+K+ I +++ D+P +++EL LPG+GPKMA L + W NV GI VD HVHR
Sbjct: 122 IKRATQILRDEFNSDVPKTVEELCSLPGVGPKMAFLALQDAWKLQVVNV-GIGVDVHVHR 180
Query: 57 ICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGM 116
I NRLGW K T +PE+TR L+ WLP E IN LLVGFGQT+C P+ PRC
Sbjct: 181 ITNRLGW-----HKPLTKTPEETRVNLESWLPLELHPKINALLVGFGQTVCLPVGPRCDT 235
Query: 117 CSVSE-LCPSA 126
C +S LCPSA
Sbjct: 236 CELSNGLCPSA 246
>gi|354546368|emb|CCE43098.1| hypothetical protein CPAR2_207410 [Candida parapsilosis]
Length = 361
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 90/143 (62%), Gaps = 8/143 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K I +++DGDIP +++E++ LPG+GPKM +L++ GW GI VD H+HR+
Sbjct: 207 IAKTCQILKSEFDGDIPKTIEEIVKLPGVGPKMGYLLLQAGWGINSGIGVDVHLHRLALL 266
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWVS +K ++PE+ R L+ W+PK+ W INPL+VGFGQ +C P C +C++
Sbjct: 267 WGWVS-----KKATTPEKCRLELESWIPKKYWSDINPLIVGFGQVVCVPRASNCDICALG 321
Query: 121 E--LCPSAFKD-SSSPSSKSRKS 140
LC +A K+ P ++ RK+
Sbjct: 322 RKGLCSAANKNLLRGPVTEERKA 344
>gi|7021393|gb|AAF35322.1|AF222908_2 Ntg1 [Candida albicans]
Length = 311
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 8/141 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K I + +DGDIP +++E++ LPG+GPKM L++ GW GI VD H+HR+
Sbjct: 166 IRKTCSILMENHDGDIPKTIEEIVALPGVGPKMGFLLLQSGWGINAGIGVDVHLHRLALM 225
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWVS K ++PE+ R LQ WLPK+ W INPL+VGFGQ IC P C +C+++
Sbjct: 226 WGWVS-----PKANTPEKARIELQEWLPKDYWTDINPLVVGFGQVICVPRAANCDICTLA 280
Query: 121 E--LCPSAFKD-SSSPSSKSR 138
LC K +P S+ R
Sbjct: 281 RDGLCKGVNKKLLKTPLSEER 301
>gi|68476685|ref|XP_717635.1| hypothetical protein CaO19.5098 [Candida albicans SC5314]
gi|68476832|ref|XP_717561.1| hypothetical protein CaO19.12564 [Candida albicans SC5314]
gi|46439276|gb|EAK98596.1| hypothetical protein CaO19.12564 [Candida albicans SC5314]
gi|46439353|gb|EAK98672.1| hypothetical protein CaO19.5098 [Candida albicans SC5314]
Length = 320
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 8/141 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K I + +DGDIP +++E++ LPG+GPKM L++ GW GI VD H+HR+
Sbjct: 166 IRKTCSILMENHDGDIPKTIEEIVALPGVGPKMGFLLLQSGWGINAGIGVDVHLHRLALM 225
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWVS K ++PE+ R LQ WLPK+ W INPL+VGFGQ IC P C +C+++
Sbjct: 226 WGWVS-----PKANTPEKARIELQEWLPKDYWTDINPLVVGFGQVICVPRAANCDICTLA 280
Query: 121 E--LCPSAFKD-SSSPSSKSR 138
LC K +P S+ R
Sbjct: 281 RDGLCKGVNKKLLKTPLSEER 301
>gi|344234607|gb|EGV66475.1| hypothetical protein CANTEDRAFT_128882 [Candida tenuis ATCC 10573]
Length = 276
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 8/118 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ GDIP+++++++ LPG+GPKM +L++ GWN GI VD H+HR+ GW
Sbjct: 132 QFGGDIPNTIEQIVKLPGVGPKMGYLLLQRGWNISTGIGVDVHLHRLAMMWGW------S 185
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS--ELCPSA 126
+KT++P+ TR+ L+ WLP++ W INPLLVGFGQ ICTP C +CS++ LC S
Sbjct: 186 KKTTNPDMTRKYLEEWLPRKFWAEINPLLVGFGQVICTPQFQNCDVCSLATKSLCKSV 243
>gi|344234608|gb|EGV66476.1| DNA glycosylase [Candida tenuis ATCC 10573]
Length = 245
Score = 119 bits (298), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 8/118 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ GDIP+++++++ LPG+GPKM +L++ GWN GI VD H+HR+ GW
Sbjct: 101 QFGGDIPNTIEQIVKLPGVGPKMGYLLLQRGWNISTGIGVDVHLHRLAMMWGW------S 154
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS--ELCPSA 126
+KT++P+ TR+ L+ WLP++ W INPLLVGFGQ ICTP C +CS++ LC S
Sbjct: 155 KKTTNPDMTRKYLEEWLPRKFWAEINPLLVGFGQVICTPQFQNCDVCSLATKSLCKSV 212
>gi|154249096|ref|YP_001409921.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
gi|154153032|gb|ABS60264.1| endonuclease III [Fervidobacterium nodosum Rt17-B1]
Length = 221
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 9/132 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
++ I L KYDG +P+ L+ELL LPG+G K A++V++V ++ + VDTHVHRI NRLGW
Sbjct: 99 VSKILLEKYDGVVPNKLEELLELPGVGRKTANIVLHVSFDQA-ALAVDTHVHRISNRLGW 157
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V KT +PEQT E L+ + + W PIN +V FG+ IC PI PRC C ++E C
Sbjct: 158 V-------KTKTPEQTEEELKKIMSPQLWGPINGSMVEFGKNICKPISPRCEQCFLTECC 210
Query: 124 PSAFKDSSSPSS 135
FK+ + +
Sbjct: 211 -DFFKNKYNSKT 221
>gi|118395856|ref|XP_001030273.1| HhH-GPD superfamily base excision DNA repair protein [Tetrahymena
thermophila]
gi|89284570|gb|EAR82610.1| HhH-GPD superfamily base excision DNA repair protein [Tetrahymena
thermophila SB210]
Length = 371
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 76/126 (60%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + Y+ IP ++L+ + GIGPK+A+L + +N GI VDTHVHRI NR
Sbjct: 243 IKNAAEVIKNTYNYVIPDQYEDLIKIKGIGPKVANLFLQCAYNKTVGIAVDTHVHRISNR 302
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L WVS T +PEQTR L+ L K+ W +N LLVG+GQ++C P P+C +C V
Sbjct: 303 LEWVS-------TKTPEQTRIELEKLLDKKYWEDVNNLLVGYGQSVCKPQNPQCQICPVK 355
Query: 121 ELCPSA 126
+ CP
Sbjct: 356 DKCPEG 361
>gi|432328581|ref|YP_007246725.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
gi|432135290|gb|AGB04559.1| putative endoIII-related endonuclease [Aciduliprofundum sp.
MAR08-339]
Length = 209
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 83/129 (64%), Gaps = 9/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+IA I +YDG +P +LDELL LPG+G K A++V++ ++ I VD HVHRI NR
Sbjct: 86 IKEIARIIDEEYDGVVPRTLDELLKLPGVGRKTANIVLSRCFDQ-DVIAVDVHVHRISNR 144
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWVS T +PE+T L LPK+ W IN LLV FG+TIC P+ P+C C VS
Sbjct: 145 LGWVS-------TRTPEETERELMKILPKKYWREINELLVMFGRTICRPVGPKCDECPVS 197
Query: 121 ELCPSAFKD 129
+ C FK+
Sbjct: 198 DFC-DYFKN 205
>gi|56758404|gb|AAW27342.1| unknown [Schistosoma japonicum]
Length = 124
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 69/106 (65%), Gaps = 5/106 (4%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTREV 82
L++L G+GPKMA+L M W V GI VDTHVHRI NRL W +P T +PE+TR
Sbjct: 12 LIILLGVGPKMAYLAMKCAWKKVTGIGVDTHVHRITNRLKWSKRP-----TKTPEETRMA 66
Query: 83 LQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
L+ WLP+E W IN LLVGFGQ IC P+ P C C +CPSA K
Sbjct: 67 LEEWLPREYWDEINLLLVGFGQQICRPVNPNCMGCLNRSICPSASK 112
>gi|323307092|gb|EGA60375.1| Ntg2p [Saccharomyces cerevisiae FostersO]
Length = 380
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 4/125 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + + +D DIP ++ +L LPG+GPKM +L + GW + GICVD HVHR+C
Sbjct: 217 IKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQKGWGLIXGICVDVHVHRLCKM 276
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV K + E TR+ LQ+WLP W IN +LVGFGQ IC RC +C +
Sbjct: 277 XNWVDPI----KCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQLICMARGKRCDLCLAN 332
Query: 121 ELCPS 125
++C +
Sbjct: 333 DVCNA 337
>gi|374316259|ref|YP_005062687.1| putative endoIII-related endonuclease [Sphaerochaeta pleomorpha
str. Grapes]
gi|359351903|gb|AEV29677.1| putative endoIII-related endonuclease [Sphaerochaeta pleomorpha
str. Grapes]
Length = 220
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 79/120 (65%), Gaps = 8/120 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I+ I Y+G +PSS ++LL LPG+G K A+L +N+G+ ++ ICVD HVH+I NR+GW
Sbjct: 100 ISEILEMTYNGKVPSSSEKLLQLPGVGIKTANLTLNLGFG-IEAICVDCHVHQIANRMGW 158
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V+ T +PEQT + LQ +PK W+P+N LLV +GQ ICT + P C CS + C
Sbjct: 159 VA-------TKTPEQTEQALQTVMPKRFWIPLNELLVVYGQYICTSVSPWCSKCSETATC 211
>gi|163781957|ref|ZP_02176957.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
gi|159883177|gb|EDP76681.1| endonuclease III [Hydrogenivirga sp. 128-5-R1-1]
Length = 213
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 81/123 (65%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I + + G++P + +ELL LPG+G K+A+LV+ G++ + ICVDTHVHRI NR
Sbjct: 95 LKKLAEILIRDFGGEVPKTREELLRLPGVGRKVANLVLADGYS-IPAICVDTHVHRITNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
V KT +PE+T + L LP+E W+ IN LLV FGQ ICTP RPRCG C +
Sbjct: 154 WCLV-------KTRTPEETEKKLMEVLPEEYWIVINRLLVAFGQRICTPQRPRCGECPIE 206
Query: 121 ELC 123
C
Sbjct: 207 NFC 209
>gi|367004330|ref|XP_003686898.1| hypothetical protein TPHA_0H02610 [Tetrapisispora phaffii CBS 4417]
gi|357525200|emb|CCE64464.1| hypothetical protein TPHA_0H02610 [Tetrapisispora phaffii CBS 4417]
Length = 455
Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats.
Identities = 53/109 (48%), Positives = 69/109 (63%), Gaps = 4/109 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + KY+ DIPS++ +LL LPG+GPKM +LVM W + GICVD HVHR
Sbjct: 239 IKETAKLLKEKYNSDIPSNIKDLLALPGVGPKMGYLVMQKAWGKIDGICVDVHVHRFAKL 298
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTP 109
WV +K ++PE TR+ L+ WLP E W IN +LVGFGQ I P
Sbjct: 299 FKWVD----PKKCTTPEHTRKALEKWLPHELWYEINSVLVGFGQVISEP 343
>gi|440634594|gb|ELR04513.1| hypothetical protein GMDG_06808 [Geomyces destructans 20631-21]
Length = 485
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I + GDIP + + L+ LPG+GPKMA+L ++ W V+GI VD HVHRI N
Sbjct: 257 IKGAAEILRDAHGGDIPDTAEGLMALPGVGPKMAYLCLSAAWGRVEGIGVDVHVHRITNL 316
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRP--RCGMCS 118
GW + G T PE+TR L+ W+P+ W IN LLVGFGQT+C R RCG C
Sbjct: 317 WGWHGRGG----TKGPEETRGRLEGWVPRGRWAEINWLLVGFGQTVCMSERGRRRCGECE 372
Query: 119 VS 120
V
Sbjct: 373 VG 374
>gi|123505745|ref|XP_001329048.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
gi|121911998|gb|EAY16825.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
Length = 238
Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 74/133 (55%), Gaps = 7/133 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A IC KY+ DIP +L EL G+G KM L M W GI VD HVHRI N LGWV
Sbjct: 110 AKICHEKYNDDIPKTLKELTSFNGVGVKMGTLAMAHCWGEQIGIGVDVHVHRISNLLGWV 169
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
KT P+ T LQ LPKE W +N LVGFGQTIC +P+C C + + CP
Sbjct: 170 -------KTKKPDDTELALQKILPKEIWSEVNHTLVGFGQTICDAKKPKCDECPIKDTCP 222
Query: 125 SAFKDSSSPSSKS 137
+ + S+S +S
Sbjct: 223 ALQRGSASEDDES 235
>gi|6324530|ref|NP_014599.1| bifunctional N-glycosylase/AP lyase NTG2 [Saccharomyces cerevisiae
S288c]
gi|14285602|sp|Q08214.1|NTG2_YEAST RecName: Full=DNA base excision repair N-glycosylase 2
gi|1419843|emb|CAA99045.1| endonuclease III-like glycosylase 2 [Saccharomyces cerevisiae]
gi|151945590|gb|EDN63831.1| endonuclease III DNA base excision repair N-glycosylase
[Saccharomyces cerevisiae YJM789]
gi|285814846|tpg|DAA10739.1| TPA: bifunctional N-glycosylase/AP lyase NTG2 [Saccharomyces
cerevisiae S288c]
gi|323303033|gb|EGA56836.1| Ntg2p [Saccharomyces cerevisiae FostersB]
gi|349581125|dbj|GAA26283.1| K7_Ntg2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296288|gb|EIW07390.1| Ntg2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 380
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + + +D DIP ++ +L LPG+GPKM +L + GW + GICVD HVHR+C
Sbjct: 217 IKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQKGWGLIAGICVDVHVHRLCKM 276
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV K + E TR+ LQ+WLP W IN +LVGFGQ IC RC +C +
Sbjct: 277 WNWVDPI----KCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQLICMARGKRCDLCLAN 332
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
++C +A + SSK + K
Sbjct: 333 DVC-NARNEKLIESSKFHQLEDK 354
>gi|148656645|ref|YP_001276850.1| DNA-(apurinic or apyrimidinic site) lyase [Roseiflexus sp. RS-1]
gi|148568755|gb|ABQ90900.1| DNA-(apurinic or apyrimidinic site) lyase [Roseiflexus sp. RS-1]
Length = 219
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ I I + +Y G++P+ LD LL LPG+G K A+LV+ G++ + GICVDTHVHRICNR
Sbjct: 96 IRTICQILIDQYGGEVPADLDALLALPGVGRKTANLVLTAGFD-LPGICVDTHVHRICNR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V +T +PE+T L+ LP E W IN LLV GQ IC P PRC +C ++
Sbjct: 155 WGYV-------QTRTPEETEMRLREILPPEYWKEINGLLVTLGQNICHPTSPRCSVCPLA 207
Query: 121 ELC 123
LC
Sbjct: 208 HLC 210
>gi|190345325|gb|EDK37193.2| hypothetical protein PGUG_01291 [Meyerozyma guilliermondii ATCC
6260]
Length = 455
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + + + GDIP ++ +++ LPG+GPKM +L++ GW +GI VD H+HR+
Sbjct: 296 IKRASQMLHDNHSGDIPDNIRDIVALPGVGPKMGYLLLQRGWYKNEGIGVDVHIHRLAQM 355
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GWVS R +PEQTR L+ WLP+ W INP+LVGFGQ IC P C +C++
Sbjct: 356 WGWVSAKAR-----TPEQTRLELESWLPRRLWGDINPILVGFGQVICPPNYGNCDICTLG 410
Query: 120 -SELCPSAFK 128
+LC A K
Sbjct: 411 KQKLCKGANK 420
>gi|50310813|ref|XP_455429.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644565|emb|CAG98137.1| KLLA0F07711p [Kluyveromyces lactis]
Length = 391
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 4/128 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A + ++DGD+P++++ + LPG+GPKM +L + W + GI VD HV R+
Sbjct: 203 IKKAAVMLRDQFDGDVPTTIEGFMSLPGVGPKMGYLALQKSWAKIDGIGVDVHVDRLAKM 262
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV K +PE TR+ L+ WLP+ W INP+LVGFGQ +C P RC +C V+
Sbjct: 263 WKWVDPKVCK----TPEHTRKQLESWLPRSLWYEINPVLVGFGQVLCMPRSKRCELCLVN 318
Query: 121 ELCPSAFK 128
++CP K
Sbjct: 319 DICPGVDK 326
>gi|50555097|ref|XP_504957.1| YALI0F03641p [Yarrowia lipolytica]
gi|49650827|emb|CAG77764.1| YALI0F03641p [Yarrowia lipolytica CLIB122]
Length = 483
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 78/124 (62%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ + + + + GDIP ++ + LPG+GPKMAHL+M+ W +GI VD HVHR+ N
Sbjct: 335 ISRATALLVKDFGGDIPPTIAAMTSLPGVGPKMAHLLMHRAWGVNEGIGVDVHVHRLANM 394
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWV K +PE++R L+ WLP+E WV INP LVGFGQT+C +CG+C V
Sbjct: 395 WGWV-------KGKTPEESRVQLEKWLPQELWVDINPTLVGFGQTVCPSKGKKCGVCIVD 447
Query: 121 E-LC 123
+ LC
Sbjct: 448 KGLC 451
>gi|323335667|gb|EGA76950.1| Ntg2p [Saccharomyces cerevisiae Vin13]
Length = 292
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + + +D DIP ++ +L LPG+GPKM +L + GW + GICVD HVHR+C
Sbjct: 129 IKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQKGWGLIVGICVDVHVHRLCKM 188
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV K + E TR+ LQ+WLP W IN +LVGFGQ IC RC +C +
Sbjct: 189 WNWVDPI----KCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQLICMARGKRCDLCLAN 244
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
++C +A + SSK + K
Sbjct: 245 DVC-NARNEKLIESSKFHQLEDK 266
>gi|146419315|ref|XP_001485620.1| hypothetical protein PGUG_01291 [Meyerozyma guilliermondii ATCC
6260]
Length = 455
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + + + GDIP ++ +++ LPG+GPKM +L++ GW +GI VD H+HR+
Sbjct: 296 IKRASQMLHDNHSGDIPDNIRDIVALPGVGPKMGYLLLQRGWYKNEGIGVDVHIHRLAQM 355
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GWVS R +PEQTR L+ WLP+ W INP+LVGFGQ IC P C +C++
Sbjct: 356 WGWVSAKAR-----TPEQTRLELESWLPRRLWGDINPILVGFGQVICPPNYGNCDICTLG 410
Query: 120 -SELCPSAFK 128
+LC A K
Sbjct: 411 KQKLCKGANK 420
>gi|303284701|ref|XP_003061641.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456971|gb|EEH54271.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 192
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A K+ G +P ++ EL LPG+GPK+AHLV +V + G+ VD HV R+ +R
Sbjct: 71 VKEVAAAIRAKHRGVVPRTVVELKTLPGVGPKIAHLVASVAFGEASGVVVDAHVRRVASR 130
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW + ++ S E TR ++ WLP+EEW L+ GQ C +PRCG C+V+
Sbjct: 131 LGWTTDA----ESRSAEATRARMEEWLPREEWERATLALIAHGQETCDARKPRCGECAVA 186
Query: 121 ELCPSA 126
CPSA
Sbjct: 187 NACPSA 192
>gi|190407301|gb|EDV10568.1| endonuclease III DNA base excision repair N-glycosylase
[Saccharomyces cerevisiae RM11-1a]
gi|207341351|gb|EDZ69433.1| YOL043Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273941|gb|EEU08860.1| Ntg2p [Saccharomyces cerevisiae JAY291]
gi|259149442|emb|CAY86246.1| Ntg2p [Saccharomyces cerevisiae EC1118]
gi|323346595|gb|EGA80881.1| Ntg2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352347|gb|EGA84882.1| Ntg2p [Saccharomyces cerevisiae VL3]
gi|365763207|gb|EHN04737.1| Ntg2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 380
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + + +D DIP ++ +L LPG+GPKM +L + GW + GICVD HVHR+C
Sbjct: 217 IKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQKGWGLIVGICVDVHVHRLCKM 276
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV K + E TR+ LQ+WLP W IN +LVGFGQ IC RC +C +
Sbjct: 277 WNWVDPI----KCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQLICMARGKRCDLCLAN 332
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
++C +A + SSK + K
Sbjct: 333 DVC-NARNEKLIESSKFHQLEDK 354
>gi|344300617|gb|EGW30938.1| hypothetical protein SPAPADRAFT_156404 [Spathaspora passalidarum
NRRL Y-27907]
Length = 329
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 80/123 (65%), Gaps = 5/123 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + + ++GDIP++++E+ LPG+GPKM +L++ GW GI VD H+HR+
Sbjct: 165 IKRSCQMLIDSHNGDIPTTIEEITALPGVGPKMGYLLLQAGWGINSGIGVDVHLHRLAQM 224
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWVS +K ++PE+ R L+ WLP++ W +NPL+VGFGQ +C C +CS++
Sbjct: 225 WGWVS-----KKATTPEKARLELEDWLPRQYWKDVNPLMVGFGQVVCGSRAKNCDVCSLN 279
Query: 121 ELC 123
+C
Sbjct: 280 TMC 282
>gi|296109836|ref|YP_003616785.1| DNA-(apurinic or apyrimidinic site) lyase [methanocaldococcus
infernus ME]
gi|295434650|gb|ADG13821.1| DNA-(apurinic or apyrimidinic site) lyase [Methanocaldococcus
infernus ME]
Length = 343
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 12/126 (9%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A + KY+G++PS++DELL LPG+G K A LV+++ +N + ICVDTHVHRI NR
Sbjct: 86 LKKLAKVLKEKYNGEVPSNMDELLSLPGVGVKTASLVLSLAFNKDE-ICVDTHVHRISNR 144
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
W T +PE++RE L+ LPK+ W IN LLV FG++IC P +P+C C
Sbjct: 145 --WFID------TETPEESREELKKVLPKKYWKSINNLLVLFGRSICGP-KPKCDKCYEE 195
Query: 119 VSELCP 124
+ ELCP
Sbjct: 196 IKELCP 201
>gi|327398938|ref|YP_004339807.1| DNA-(apurinic or apyrimidinic site) lyase [Hippea maritima DSM
10411]
gi|327181567|gb|AEA33748.1| DNA-(apurinic or apyrimidinic site) lyase [Hippea maritima DSM
10411]
Length = 217
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA I + Y G IP LDELL LP +G K A+LV+ G+ ICVD HVHRI NR
Sbjct: 94 LKKIARIIIENYGGKIPDDLDELLKLPNVGRKTANLVLAKGFGK-PAICVDIHVHRISNR 152
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V T +PE+T L LPK+ W+ N LLV FGQ IC PI P C C +S
Sbjct: 153 LGLVD-------TKTPEETEFALSKILPKKYWIEFNDLLVPFGQNICRPISPFCSKCIIS 205
Query: 121 ELC 123
+ C
Sbjct: 206 KYC 208
>gi|392412414|ref|YP_006449021.1| putative endoIII-related endonuclease [Desulfomonile tiedjei DSM
6799]
gi|390625550|gb|AFM26757.1| putative endoIII-related endonuclease [Desulfomonile tiedjei DSM
6799]
Length = 222
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++++A L KY G +P LDELL + G+G K A+LV+ +G+ QGICVDTHVHR+ NR
Sbjct: 99 LRQLARDLLQKYGGKVPDDLDELLTIKGVGRKTANLVITLGFGQ-QGICVDTHVHRVSNR 157
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+VS T +PEQT L+ LP E W+ N LLV +GQ IC PI P C C V
Sbjct: 158 LGYVS-------TKTPEQTEMALRAKLPAEYWIEYNDLLVTWGQNICRPISPFCSKCPVL 210
Query: 121 ELC 123
C
Sbjct: 211 VCC 213
>gi|195953263|ref|YP_002121553.1| DNA-(apurinic or apyrimidinic site) lyase [Hydrogenobaculum sp.
Y04AAS1]
gi|195932875|gb|ACG57575.1| DNA-(apurinic or apyrimidinic site) lyase [Hydrogenobaculum sp.
Y04AAS1]
Length = 225
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+++ I + KY IP++L+ELL LPG+G K+A+LV+ G+ + ICVD HVHRI NR
Sbjct: 95 LKELSKILVEKYSAKIPNTLEELLELPGVGLKVANLVLAEGFG-IPAICVDVHVHRITNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
V KT +PEQT E L+ LPK+ W+ IN LV FGQ IC PI+P C +C +
Sbjct: 154 WCLV-------KTKTPEQTEEALKNILPKKYWIDINRYLVSFGQRICKPIKPSCNICPIE 206
Query: 121 ELC 123
C
Sbjct: 207 RFC 209
>gi|400756511|ref|NP_952501.2| endonuclease III-like DNA glycosidase [Geobacter sulfurreducens
PCA]
gi|409911973|ref|YP_006890438.1| endonuclease III-like DNA glycosidase [Geobacter sulfurreducens
KN400]
gi|298505566|gb|ADI84289.1| endonuclease III-related DNA glycosidase, HhH-GPD superfamily
[Geobacter sulfurreducens KN400]
gi|399107822|gb|AAR34824.2| endonuclease III-related DNA glycosidase, HhH-GPD superfamily
[Geobacter sulfurreducens PCA]
Length = 218
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I + L +YDG +P LDELL G+G K A+LV+ +G+ GICVDTHVHRICNR G
Sbjct: 97 EICRVLLERYDGGVPDELDELLAFKGVGRKTANLVITLGFGK-PGICVDTHVHRICNRWG 155
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
++ +T +PEQT L+ LP W+ IN LV FGQ CTP+ PRC C +++
Sbjct: 156 YI-------RTKTPEQTEFSLRRILPHRYWLVINDYLVTFGQNHCTPVSPRCSTCVLAQW 208
Query: 123 C 123
C
Sbjct: 209 C 209
>gi|158522177|ref|YP_001530047.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfococcus oleovorans
Hxd3]
gi|158511003|gb|ABW67970.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfococcus oleovorans
Hxd3]
Length = 220
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 76/122 (62%), Gaps = 8/122 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I L ++DG +P ++ LL LPG+G K A+LV+ G+ GICVDTHVHRI NR G
Sbjct: 99 EISRILLERHDGRVPDEMEALLALPGVGRKTANLVLIEGFGR-DGICVDTHVHRISNRTG 157
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V+ T +PE+T L+ LPK+ W P N LLV +GQTIC P+ P C C V
Sbjct: 158 IVT-------TRTPEETEFALRKTLPKKYWKPYNELLVSYGQTICVPVSPFCSRCPVEAE 210
Query: 123 CP 124
CP
Sbjct: 211 CP 212
>gi|159904747|ref|YP_001548409.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus
maripaludis C6]
gi|159886240|gb|ABX01177.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus
maripaludis C6]
Length = 356
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 79/126 (62%), Gaps = 11/126 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ I L KYD IP+S++EL+ LPG+G K A+LVM + ++ ICVDTHVHRI NR
Sbjct: 98 LKKLGEILLEKYDSKIPNSIEELIKLPGVGRKTANLVMTLAFDEY-AICVDTHVHRITNR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
+V T PE T L+ LPK+ W IN LLV FGQ IC+PI P+C C
Sbjct: 157 WNYVD-------TEFPENTEMELRKKLPKDYWKRINNLLVVFGQEICSPI-PKCDKCFSE 208
Query: 119 VSELCP 124
+ E+CP
Sbjct: 209 IREICP 214
>gi|222055487|ref|YP_002537849.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter daltonii
FRC-32]
gi|221564776|gb|ACM20748.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter daltonii
FRC-32]
Length = 218
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ + + +Y G +P ++ELL G+G K A+LV+ +G+ GICVDTHVHRICNR
Sbjct: 95 IKEISRLLMERYQGKVPDEIEELLTFKGVGRKTANLVVTLGYGK-PGICVDTHVHRICNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V T +PEQT + L+ LP E W+ IN LLV FGQ C PI P C C +
Sbjct: 154 WGYVV-------TRTPEQTEQALRGKLPTEYWLMINDLLVTFGQNQCYPISPICSTCPLR 206
Query: 121 ELC 123
E+C
Sbjct: 207 EMC 209
>gi|224005196|ref|XP_002296249.1| MutY family most like Nth1 [Thalassiosira pseudonana CCMP1335]
gi|209586281|gb|ACI64966.1| MutY family most like Nth1 [Thalassiosira pseudonana CCMP1335]
Length = 202
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 75/106 (70%), Gaps = 7/106 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +T+Y+GDIPS+ DEL+ LPG+GPKMA++V +V + V GI VDTH+HRI N+
Sbjct: 104 IKQATEIIITQYNGDIPSTADELMTLPGVGPKMAYIVESVAFGTVTGIGVDTHMHRIFNQ 163
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTI 106
L WV + +PE TRE L+ WLP+++W +N L VGFGQ +
Sbjct: 164 LAWVD-------SKNPEGTREQLEGWLPRDKWDEVNVLWVGFGQEV 202
>gi|238878754|gb|EEQ42392.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 320
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K I + + GDIP +++E++ LPG+GPKM L++ GW GI VD H+HR+
Sbjct: 166 IRKTCSILMENHGGDIPKTIEEIVALPGVGPKMGFLLLQSGWGINAGIGVDVHLHRLALM 225
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWVS K ++PE+ R LQ WLPK+ W INPL+VGFGQ IC P C +C+++
Sbjct: 226 WGWVS-----PKANTPEKARIELQEWLPKDYWTDINPLVVGFGQVICVPRAANCDICTLA 280
Query: 121 E--LCPSAFKD-SSSPSSKSR 138
LC K +P S+ R
Sbjct: 281 RDGLCKGVNKKLLKTPLSEER 301
>gi|396081889|gb|AFN83503.1| endonuclease III [Encephalitozoon romaleae SJ-2008]
Length = 265
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 80/137 (58%), Gaps = 10/137 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA I K +P +++L LPGIG KMA L MN V GI VDTHVHRI NR
Sbjct: 121 LKKIAEILKKK---GLPKRMEDLTSLPGIGNKMAILYMNHACGKVVGISVDTHVHRISNR 177
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V KT E TRE L+ +PK+EW IN +LVG+GQTIC RPRC C +
Sbjct: 178 IGLV-------KTRDVEDTREGLEKIIPKKEWKTINRILVGYGQTICVARRPRCEECCIR 230
Query: 121 ELCPSAFKDSSSPSSKS 137
CPS+ + + + K
Sbjct: 231 SRCPSSLFNRKASALKE 247
>gi|392376190|ref|YP_003208023.1| Endonuclease III [Candidatus Methylomirabilis oxyfera]
gi|258593883|emb|CBE70224.1| putative Endonuclease III [Candidatus Methylomirabilis oxyfera]
Length = 219
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K+ LT++DG +P +++ LL L G+G K A+LV+ VG+ GICVDTHVHRI NR
Sbjct: 96 IRKVCQDLLTRFDGRVPDTIEALLSLTGVGRKTANLVVTVGYRK-PGICVDTHVHRISNR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+VS T +PEQT L+L LPK W+ N LLV FGQ +C PI P C C +
Sbjct: 155 WGYVS-------TRTPEQTEMALRLKLPKRHWIYYNDLLVPFGQNLCRPISPFCSRCPIE 207
Query: 121 ELC 123
C
Sbjct: 208 RWC 210
>gi|291288305|ref|YP_003505121.1| DNA-(apurinic or apyrimidinic site) lyase [Denitrovibrio
acetiphilus DSM 12809]
gi|290885465|gb|ADD69165.1| DNA-(apurinic or apyrimidinic site) lyase [Denitrovibrio
acetiphilus DSM 12809]
Length = 219
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 78/126 (61%), Gaps = 8/126 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I I L +YDG +P +DELL L G+G K A+LV+ G+ ICVDTHVHRI NRLG+
Sbjct: 99 ICRILLDEYDGKVPDEIDELLKLKGVGRKTANLVVVEGYGR-DAICVDTHVHRIFNRLGY 157
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V+ T +P++T L+ LP + W+ IN +LV +G+ ICTP+ P C C +S++C
Sbjct: 158 VA-------TKTPDKTEMELRKHLPIKYWIRINEILVSYGREICTPVSPHCSYCRLSDIC 210
Query: 124 PSAFKD 129
D
Sbjct: 211 DKVSVD 216
>gi|386812677|ref|ZP_10099902.1| endonuclease III [planctomycete KSU-1]
gi|386404947|dbj|GAB62783.1| endonuclease III [planctomycete KSU-1]
Length = 215
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 77/125 (61%), Gaps = 11/125 (8%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I IC + Y G +P +DELL L G+G K A+LV+ +G+ GICVDTHVHRI
Sbjct: 90 KNIKEICKELVKTYRGKVPDEIDELLKLSGVGRKTANLVVTLGYKK-PGICVDTHVHRIT 148
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
NR G+V KT +P++T L+ LPKE W+ IN LLV FGQ IC PI P+C C
Sbjct: 149 NRWGYV-------KTKNPKETEFALREKLPKEYWLIINDLLVTFGQNICVPISPKCSFCP 201
Query: 119 VSELC 123
V+ C
Sbjct: 202 VNMYC 206
>gi|150403470|ref|YP_001330764.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus
maripaludis C7]
gi|150034500|gb|ABR66613.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus
maripaludis C7]
Length = 356
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 11/126 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ I L +YD IP+S++EL+ LPG+G K A+LVM + +++ ICVDTHVHRI NR
Sbjct: 98 LKKLGKILLEEYDSKIPNSIEELVTLPGVGRKTANLVMTLAFDDY-AICVDTHVHRITNR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
+V+ T PE T L+ LPK W IN LLV FGQ IC+PI P+C C
Sbjct: 157 WNYVN-------TEFPEDTEMELRKKLPKNYWKRINNLLVVFGQEICSPI-PKCDKCFSE 208
Query: 119 VSELCP 124
+ E+CP
Sbjct: 209 IREICP 214
>gi|50287173|ref|XP_446016.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525323|emb|CAG58940.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 4/112 (3%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+D D+P++++++L LPG+GPKM +L + W + GICVD HV R+C WV +
Sbjct: 230 FDSDVPTNVNDMLSLPGVGPKMTYLALQRAWGKMDGICVDVHVDRLCKMWRWVDA----K 285
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K +P+ TR+ LQ WLPK W IN +LVGFGQ IC RC +C +++C
Sbjct: 286 KCKTPDHTRKALQTWLPKCLWYEINTVLVGFGQVICMARGKRCDICLANDIC 337
>gi|225850162|ref|YP_002730396.1| endonuclease III (DNA-(apurinic orapyrimidinic site) lyase)
[Persephonella marina EX-H1]
gi|225646537|gb|ACO04723.1| probable endonuclease III (DNA-(apurinic orapyrimidinic site)
lyase) [Persephonella marina EX-H1]
Length = 219
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ + + G +P S+DELL L G+G K A+LV+ +G+ ICVDTHVHRI NR
Sbjct: 96 IKEISGKIVKDFGGKVPDSIDELLKLKGVGRKTANLVVALGYGK-PAICVDTHVHRISNR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+V KT + E+T L+ +P+E W IN L V FGQTIC P+ P+C C VS
Sbjct: 155 LGFV-------KTKTAEETEMALRKKVPREYWNEINDLFVAFGQTICKPVSPKCSECPVS 207
Query: 121 ELC 123
C
Sbjct: 208 SYC 210
>gi|302039433|ref|YP_003799755.1| endonuclease III [Candidatus Nitrospira defluvii]
gi|300607497|emb|CBK43830.1| Endonuclease III [Candidatus Nitrospira defluvii]
Length = 219
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 77/125 (61%), Gaps = 11/125 (8%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K+I IC L +Y G +P +DELL LPG+G K A+LV+ VG+ GICVD HVHRI
Sbjct: 94 KQIQQICAQLLERYQGRVPDKIDELLTLPGVGRKTANLVVTVGYEK-PGICVDIHVHRIS 152
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
NR G+V KT SP++T L+ LP++ W+ N LLV +GQ +C P+ P C C
Sbjct: 153 NRWGYV-------KTKSPDETETALRAKLPRKYWITFNDLLVPYGQHLCQPVSPLCSQCK 205
Query: 119 VSELC 123
++ C
Sbjct: 206 IAAYC 210
>gi|225848427|ref|YP_002728590.1| endonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644019|gb|ACN99069.1| probable endonuclease III (DNA-(apurinic orapyrimidinic site)
lyase) [Sulfurihydrogenibium azorense Az-Fu1]
Length = 216
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ I L KY G +P +L++LL L G+G K A+LV++ G+ ICVD HVHRI NR
Sbjct: 95 IKEISKIILEKYAGKVPDNLEDLLSLKGVGRKTANLVLSEGYKK-PAICVDVHVHRISNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V KT +PE+T L LPK+ W +N +LV FGQTIC PI+P C +C V
Sbjct: 154 LGVV-------KTKTPEETEFKLMEILPKKYWRDVNWVLVAFGQTICKPIKPMCDICPVK 206
Query: 121 ELC 123
C
Sbjct: 207 NFC 209
>gi|448511256|ref|XP_003866500.1| Ntg1 protein [Candida orthopsilosis Co 90-125]
gi|380350838|emb|CCG21061.1| Ntg1 protein [Candida orthopsilosis Co 90-125]
Length = 361
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 87/137 (63%), Gaps = 8/137 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++++GDIP+++++++ LPG+GPKM +L++ GW GI VD H+HR+ + WVS
Sbjct: 213 ILKSEFNGDIPNNIEDIVRLPGVGPKMGYLLLQAGWGINSGIGVDVHLHRLASLWHWVS- 271
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS--ELCP 124
K ++PE+ R L+ WLP+ W INPL+VGFGQ IC P C +C++ +LC
Sbjct: 272 ----PKATTPEKCRIELESWLPQNYWSDINPLIVGFGQVICVPRASNCDICALGRKKLCS 327
Query: 125 SAFKD-SSSPSSKSRKS 140
+A K P S+ RKS
Sbjct: 328 AANKKLLKGPVSEDRKS 344
>gi|333995660|ref|YP_004528273.1| endonuclease III [Treponema azotonutricium ZAS-9]
gi|333736234|gb|AEF82183.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Treponema azotonutricium ZAS-9]
Length = 247
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++KIA I LT+Y G +P+ +D LL LPG+G K A+LV+ ++ + GICVD HVHRI NR
Sbjct: 124 LQKIAVILLTQYGGKVPADMDALLSLPGVGRKTANLVLTEAFD-MDGICVDIHVHRISNR 182
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+GWV +T P++T L+ LPK W IN LLV +GQ +C P+ P C C ++
Sbjct: 183 MGWV-------ETEVPDKTEAELREILPKRYWKRINALLVLYGQNVCRPVSPFCSRCPLA 235
Query: 121 ELC 123
+ C
Sbjct: 236 KHC 238
>gi|291280240|ref|YP_003497075.1| endonuclease III [Deferribacter desulfuricans SSM1]
gi|290754942|dbj|BAI81319.1| endonuclease III [Deferribacter desulfuricans SSM1]
Length = 220
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+++ + KY+G +P SL+ELL + G+G K A+LV+ G++ +GICVDTHVHRICNR
Sbjct: 97 LKEVSKTLIEKYEGRVPDSLEELLKIKGVGRKTANLVLVEGFDK-EGICVDTHVHRICNR 155
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V KT +PEQT L+ LPK W N +LV +GQ IC PI P C C +
Sbjct: 156 LGVV-------KTKTPEQTEMDLRKILPKHMWKKWNEILVSYGQHICKPISPLCSACILY 208
Query: 121 ELC 123
+ C
Sbjct: 209 DKC 211
>gi|148264846|ref|YP_001231552.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter uraniireducens
Rf4]
gi|146398346|gb|ABQ26979.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter uraniireducens
Rf4]
Length = 218
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I+ + KY G +P +DELL G+G K A+LV+ +G+ GICVDTHVHRICNR
Sbjct: 95 IKDISRLIQEKYAGRVPDEIDELLTFKGVGRKTANLVVTLGYGK-PGICVDTHVHRICNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V +T +PEQT L+ LP++ W+ IN LLV FGQ C P+ P C C ++
Sbjct: 154 WGYV-------QTKTPEQTEFALRGKLPRDYWLVINDLLVTFGQNQCLPVSPLCSTCPLA 206
Query: 121 ELC 123
++C
Sbjct: 207 KMC 209
>gi|159111056|ref|XP_001705761.1| Endonuclease III [Giardia lamblia ATCC 50803]
gi|157433850|gb|EDO78087.1| Endonuclease III [Giardia lamblia ATCC 50803]
Length = 323
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 80/143 (55%), Gaps = 6/143 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MK +A ICL Y GDIP L +L LPG GPKM HL++ + + V+GI VDTHV RI R
Sbjct: 157 MKNVAQICLDNYGGDIPKDLAGILKLPGFGPKMGHLLVQIVYGQVEGIAVDTHVCRIAQR 216
Query: 61 LGWVS----QPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGM 116
L WV +P K +P+ + L LPK++W IN LLVGFGQT+C P C
Sbjct: 217 LRWVEKGMCEP--NGKMLNPDDVAKQLVETLPKDKWRDINHLLVGFGQTVCKASFPECNR 274
Query: 117 CSVSELCPSAFKDSSSPSSKSRK 139
C ++ K + P + + K
Sbjct: 275 CLIAGTGHCYHKSETKPETGTGK 297
>gi|84489308|ref|YP_447540.1| endonuclease III [Methanosphaera stadtmanae DSM 3091]
gi|84372627|gb|ABC56897.1| putative endonuclease III [Methanosphaera stadtmanae DSM 3091]
Length = 219
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+++ I L +YDG +P +L+ELL LPG+G K A+ V+ G+ I VD HVHRI NR
Sbjct: 96 IKEVSNILLEEYDGVVPDTLEELLKLPGVGRKTANCVLVFGFQK-DAIPVDVHVHRISNR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V T PE T EVL+ +P+E W+PIN L+V FGQ IC PI P+ C +
Sbjct: 155 LGLVH-------TDKPEDTEEVLREIVPQEYWLPINDLMVQFGQNICKPINPQHIECPFT 207
Query: 121 ELC 123
+LC
Sbjct: 208 DLC 210
>gi|401827350|ref|XP_003887767.1| endonuclease III [Encephalitozoon hellem ATCC 50504]
gi|392998774|gb|AFM98786.1| endonuclease III [Encephalitozoon hellem ATCC 50504]
Length = 238
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA I K +P ++++L LPG+G KMA L MN N V GI VDTHVHRI NR
Sbjct: 121 LKKIAEILKKK---GLPENMEDLTSLPGVGNKMAILYMNHACNKVVGISVDTHVHRISNR 177
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V KT E TR+ L+ +PK EW IN LVG+GQTIC RPRC C +
Sbjct: 178 IGLV-------KTKDVESTRKELEKIVPKREWGSINRTLVGYGQTICVAKRPRCKECCIR 230
Query: 121 ELCPSAF 127
CPS+
Sbjct: 231 GECPSSL 237
>gi|222099270|ref|YP_002533838.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
gi|221571660|gb|ACM22472.1| Endonuclease III [Thermotoga neapolitana DSM 4359]
Length = 208
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
KI+ I + KY G +P +L+ELL LPG+G K A++V+ VG+ + VDTHVHRI NRLG
Sbjct: 84 KISKIIVEKYSGKVPDTLEELLRLPGVGRKTANIVLWVGFRK-PALAVDTHVHRISNRLG 142
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV KT +PE+T + L+ LP++ W PIN +V FG+ +C P+ P+C C + +
Sbjct: 143 WV-------KTKTPEETEKALKRLLPEKLWGPINGSMVEFGRNVCRPVNPKCEDCFLKKH 195
Query: 123 C 123
C
Sbjct: 196 C 196
>gi|322419437|ref|YP_004198660.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter sp. M18]
gi|320125824|gb|ADW13384.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter sp. M18]
Length = 218
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 72/112 (64%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y G++P L+ LL G+G K A+LV+ +G++ GICVD HVHRICNR G+V
Sbjct: 106 YQGEVPDDLETLLKFKGVGRKTANLVLTLGFSK-PGICVDIHVHRICNRWGYV------- 157
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
KT++PEQT L+ LP E W+ IN LLV FGQ CTP+ PRC C + + C
Sbjct: 158 KTATPEQTEFALRKKLPVEYWIIINDLLVTFGQNQCTPVSPRCSTCPLYQFC 209
>gi|429962695|gb|ELA42239.1| hypothetical protein VICG_00638 [Vittaforma corneae ATCC 50505]
Length = 234
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 68/109 (62%), Gaps = 7/109 (6%)
Query: 16 IPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSS 75
+P + +ELL LPG+G KMA+L +N +GI VDTHVHR+ NR+G V T
Sbjct: 109 MPETFEELLKLPGVGKKMANLYLNHALGRNEGISVDTHVHRVSNRIGLVC-------TKD 161
Query: 76 PEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
PE TR L+ ++EW +N + VGFGQ IC I+P+CG CSV + CP
Sbjct: 162 PEHTRRALESIFDRDEWPEVNRVFVGFGQMICKAIKPKCGECSVQDRCP 210
>gi|308161443|gb|EFO63889.1| Endonuclease III [Giardia lamblia P15]
Length = 323
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 80/143 (55%), Gaps = 6/143 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MK +A ICL Y GDIP L +L LPG GPKM HL++ + + V+GI VDTHV RI R
Sbjct: 157 MKNVAQICLDNYGGDIPKDLAGILKLPGFGPKMGHLLVQIVYGQVEGIAVDTHVCRIAQR 216
Query: 61 LGWVS----QPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGM 116
L WV +P K +P+ + L LPK++W IN LLVGFGQT+C P C
Sbjct: 217 LRWVEKGMCEP--NGKMLNPDDVAKQLVETLPKDKWRDINHLLVGFGQTVCKASFPECNR 274
Query: 117 CSVSELCPSAFKDSSSPSSKSRK 139
C ++ K + P + + K
Sbjct: 275 CLIAGTGRCYHKPETKPEAGAGK 297
>gi|363749897|ref|XP_003645166.1| hypothetical protein Ecym_2637 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888799|gb|AET38349.1| Hypothetical protein Ecym_2637 [Eremothecium cymbalariae
DBVPG#7215]
Length = 364
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 4/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A + L +++ D+P+++ L LPG+GPKM +L + W + GI VD HV R+C
Sbjct: 201 IKRMAQMLLDEFEQDVPTTITGLSSLPGVGPKMGYLALQKAWGIIGGIGVDVHVDRLCKM 260
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV K +PE TR+ L+ WLP E W INP+LVGFGQ IC RC +C +
Sbjct: 261 WKWVDP----NKCKTPEHTRKALESWLPHELWNEINPVLVGFGQVICPARGKRCDLCLAN 316
Query: 121 ELCPSA 126
++C SA
Sbjct: 317 KVCKSA 322
>gi|392894670|ref|NP_001254909.1| Protein NTH-1, isoform c [Caenorhabditis elegans]
gi|293324784|emb|CBK55600.1| Protein NTH-1, isoform c [Caenorhabditis elegans]
Length = 140
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 65/94 (69%), Gaps = 7/94 (7%)
Query: 33 MAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEW 92
MA+LVM + W GI VDTHVHRI NRLGW+ KTS+PE+T++ L++ LPK EW
Sbjct: 1 MANLVMQIAWGECVGIAVDTHVHRISNRLGWI-------KTSTPEKTQKALEILLPKSEW 53
Query: 93 VPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
PIN LLVGFGQ C P+RP+CG C CPS+
Sbjct: 54 QPINHLLVGFGQMQCQPVRPKCGTCLCRFTCPSS 87
>gi|134046103|ref|YP_001097589.1| hypothetical protein MmarC5_1071 [Methanococcus maripaludis C5]
gi|132663728|gb|ABO35374.1| protein of unknown function DUF123 [Methanococcus maripaludis C5]
Length = 356
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 11/126 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ I L +YD IP+S++EL+ LPG+G K A+LVM + ++ ICVDTHVHRI NR
Sbjct: 98 LKKLGKILLEEYDSKIPNSIEELITLPGVGRKTANLVMTLAFDEY-AICVDTHVHRITNR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
+V T PE T L+ LPK+ W IN LLV FGQ IC+PI P+C C
Sbjct: 157 WNYVD-------TEFPENTEMELRKKLPKDYWKRINNLLVVFGQEICSPI-PKCDKCFSE 208
Query: 119 VSELCP 124
+ ++CP
Sbjct: 209 IRKICP 214
>gi|300870285|ref|YP_003785156.1| endonuclease III [Brachyspira pilosicoli 95/1000]
gi|300687984|gb|ADK30655.1| endonuclease III, putative [Brachyspira pilosicoli 95/1000]
Length = 217
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ + + Y+G++P +DELL L G+G K+A+LV+ ++ GICVDTHVHRI NR G
Sbjct: 98 EVSHMIIDDYNGEVPDEIDELLKLKGVGRKVANLVVTEAFDK-DGICVDTHVHRISNRFG 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V T +PE+T L+ LPKE W N LV +GQ +C PI P C C+VS+
Sbjct: 157 YVH-------TKTPEETEFALREKLPKEYWRVYNDTLVVYGQNLCKPISPLCSECTVSQY 209
Query: 123 CPSAFKD 129
C FK+
Sbjct: 210 C-DYFKN 215
>gi|404476670|ref|YP_006708101.1| endonuclease III [Brachyspira pilosicoli B2904]
gi|431808877|ref|YP_007235775.1| endonuclease III [Brachyspira pilosicoli P43/6/78]
gi|434382739|ref|YP_006704522.1| endonuclease III [Brachyspira pilosicoli WesB]
gi|404431388|emb|CCG57434.1| endonuclease III [Brachyspira pilosicoli WesB]
gi|404438159|gb|AFR71353.1| endonuclease III [Brachyspira pilosicoli B2904]
gi|430782236|gb|AGA67520.1| endonuclease III [Brachyspira pilosicoli P43/6/78]
Length = 217
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ + + Y+G++P +DELL L G+G K+A+LV+ ++ GICVDTHVHRI NR G
Sbjct: 98 EVSHMIIDDYNGEVPDEIDELLKLKGVGRKVANLVVTEAFDK-DGICVDTHVHRISNRFG 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V T +PE+T L+ LPKE W N LV +GQ +C PI P C C+VS+
Sbjct: 157 YVH-------TKTPEETEFALREKLPKEYWRVYNDTLVVYGQNLCKPISPLCSECTVSQY 209
Query: 123 CPSAFKD 129
C FK+
Sbjct: 210 C-DYFKN 215
>gi|309791484|ref|ZP_07685988.1| DNA-(apurinic or apyrimidinic site) lyase [Oscillochloris
trichoides DG-6]
gi|308226481|gb|EFO80205.1| DNA-(apurinic or apyrimidinic site) lyase [Oscillochloris
trichoides DG6]
Length = 219
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ IA + L +Y+G +PS L+ LL LPG+G K A+LV G+ + GICVD HVHRI NR
Sbjct: 96 LIAIAHMLLERYNGAVPSDLEALLTLPGVGRKTANLVRTAGFG-LPGICVDIHVHRITNR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V+ T P+ T L+ LP + W+PIN LLV +GQ IC P PRC C V+
Sbjct: 155 WGYVA-------TKDPDATEMALRTMLPAQYWIPINRLLVTWGQNICHPTSPRCSTCPVA 207
Query: 121 ELC 123
C
Sbjct: 208 TYC 210
>gi|449328842|gb|AGE95118.1| endonuclease III [Encephalitozoon cuniculi]
Length = 238
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 75/127 (59%), Gaps = 10/127 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA I K +P + +L+ LPGIG KMA L M+ N GI VDTHVHRI NR
Sbjct: 121 LKKIAEILREK---GLPREMKDLISLPGIGNKMALLYMSHACNRTVGISVDTHVHRISNR 177
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V KT E TR L+ +P+EEW IN +LVGFGQTIC RP+C C +
Sbjct: 178 IGLV-------KTRDVESTRRELERVVPREEWKTINNILVGFGQTICVAKRPKCEECCIR 230
Query: 121 ELCPSAF 127
CPS+
Sbjct: 231 GRCPSSL 237
>gi|303390292|ref|XP_003073377.1| endonuclease III [Encephalitozoon intestinalis ATCC 50506]
gi|303302523|gb|ADM12017.1| endonuclease III [Encephalitozoon intestinalis ATCC 50506]
Length = 238
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 75/127 (59%), Gaps = 10/127 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I I K +P + +L+ LPGIG KMA L MN +V GI VDTHVHRI NR
Sbjct: 121 LKRITEILREK---GLPEEMKDLVSLPGIGNKMAILYMNHACGSVVGISVDTHVHRISNR 177
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V KT E TR L+ +PK EW IN +LVG+GQT+C RP+C C +
Sbjct: 178 IGLV-------KTKDAESTRRELEKIVPKREWETINRVLVGYGQTVCVARRPKCEECCIR 230
Query: 121 ELCPSAF 127
CPS+F
Sbjct: 231 SKCPSSF 237
>gi|406879151|gb|EKD27842.1| hypothetical protein ACD_79C00539G0001, partial [uncultured
bacterium]
Length = 212
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 80/124 (64%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A + + K++ +PS++D+LL++PG+G K A+LV++ ++ + ICVDTHV RICNR
Sbjct: 95 LKQLAAVLINKFNSLVPSNIDDLLMIPGVGRKTANLVLSRAFD-IPAICVDTHVFRICNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L +S PE+T + L +P+ W IN +LV FGQ +C P+ P C C VS
Sbjct: 154 LEVTV-------SSKPEETEKQLMKKIPENYWQDINTILVAFGQMVCKPVSPHCKECKVS 206
Query: 121 ELCP 124
LCP
Sbjct: 207 RLCP 210
>gi|336476216|ref|YP_004615357.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosalsum zhilinae
DSM 4017]
gi|335929597|gb|AEH60138.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosalsum zhilinae
DSM 4017]
Length = 203
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 80/127 (62%), Gaps = 8/127 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+IA I + +Y G++P + + LL LPG+G K A+ V+ ++ + I VDTHVHRI NR
Sbjct: 85 VKEIAEILMYRYGGEVPDNCELLLELPGVGRKTANCVLLYAFSK-ETIAVDTHVHRISNR 143
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V K+S+P++T E L+ LP+ W IN L V FGQ IC P+ P+C +C +
Sbjct: 144 LGLV-------KSSTPDETEEKLKKILPRSSWKDINELFVQFGQNICRPVSPKCDICVLC 196
Query: 121 ELCPSAF 127
+CP F
Sbjct: 197 NICPGLF 203
>gi|298675584|ref|YP_003727334.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
gi|298288572|gb|ADI74538.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalobium
evestigatum Z-7303]
Length = 203
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 80/124 (64%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ + L +YDG +P +L++LL LPG+G K A+ V+ ++ + I VDTHVHRI NR
Sbjct: 85 IKQISEMILDEYDGQVPDNLNDLLKLPGVGRKTANCVLTYAFSK-KAIAVDTHVHRISNR 143
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V +T +PE+T + L+ +P+ W IN L V FGQ C P+ PRC +C ++
Sbjct: 144 LGLV-------ETKTPEKTEKDLKKIVPENLWNKINELFVRFGQNTCRPVSPRCDVCVLN 196
Query: 121 ELCP 124
+ CP
Sbjct: 197 DTCP 200
>gi|156742725|ref|YP_001432854.1| DNA-(apurinic or apyrimidinic site) lyase [Roseiflexus castenholzii
DSM 13941]
gi|156234053|gb|ABU58836.1| DNA-(apurinic or apyrimidinic site) lyase [Roseiflexus castenholzii
DSM 13941]
Length = 219
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 78/125 (62%), Gaps = 11/125 (8%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
+ I IC + ++ G +P+ LD LL LPG+G K A+LV+ G++ + GICVDTHVHRIC
Sbjct: 94 RTIRAICRRLIEEHGGKVPADLDALLALPGVGRKTANLVLTAGFD-LPGICVDTHVHRIC 152
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
NR G+V +T +PE+T L+ LP E W IN LLV GQ IC P PRC C
Sbjct: 153 NRWGYV-------QTRTPEETEMKLREILPFEYWKEINGLLVTLGQNICHPTSPRCSACP 205
Query: 119 VSELC 123
++ LC
Sbjct: 206 LAHLC 210
>gi|340623929|ref|YP_004742382.1| endonuclease III-like protein [Methanococcus maripaludis X1]
gi|339904197|gb|AEK19639.1| endonuclease III-like protein [Methanococcus maripaludis X1]
Length = 356
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 11/126 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ I + KY+ DIP+S+++L+ LPG+G K A+LVM + +++ ICVDTHVHRI NR
Sbjct: 98 LKKLGEILIDKYNSDIPNSIEDLVTLPGVGRKTANLVMTLAFDDY-AICVDTHVHRITNR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
+ T SPE T L+ LPK W IN LLV FGQ C+PI P+C C
Sbjct: 157 WDYAD-------TESPENTEMELRKKLPKNYWKKINNLLVVFGQETCSPI-PKCDRCFSE 208
Query: 119 VSELCP 124
+ ++CP
Sbjct: 209 IKKICP 214
>gi|217076701|ref|YP_002334417.1| nth endonuclease III [Thermosipho africanus TCF52B]
gi|217036554|gb|ACJ75076.1| nth endonuclease III [Thermosipho africanus TCF52B]
Length = 203
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 77/121 (63%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I + KY G +P SL+ELL LPG+G K A++V+ V ++ + VDTHVHRI NRLG
Sbjct: 85 EISKIIVEKYSGIVPDSLEELLKLPGVGRKTANIVLYVSFSK-SALAVDTHVHRISNRLG 143
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV+ T +PE+T L LPK W PIN +V FG+ +C P+ P C +C +S+
Sbjct: 144 WVN-------TKTPEETEFKLMEILPKNLWGPINGSMVEFGKKVCKPVSPNCKICPISKY 196
Query: 123 C 123
C
Sbjct: 197 C 197
>gi|389584671|dbj|GAB67403.1| endonuclease III homologue [Plasmodium cynomolgi strain B]
Length = 391
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I KYD DIP +L+ELL LPGIG K+ HL++ N +GI VD HVHRI NRL
Sbjct: 272 QISQILRDKYDYDIPRTLEELLKLPGIGQKVGHLILQTALNTHEGIAVDIHVHRISNRLN 331
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE 121
WV T + T+ L+ ++P+ W +N LVGFGQ +C P C MC+V++
Sbjct: 332 WVC-------TKNESVTQSKLESYVPRALWSELNKTLVGFGQVVCKAKSPLCTMCAVAD 383
>gi|343421996|emb|CCD18619.1| endonuclease III, putative, (fragment) [Trypanosoma vivax Y486]
Length = 212
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + L ++G +P S +EL+ LPG+GPKMAHL + V GI VDTHVHRI R
Sbjct: 108 IKAATDMILKLHEGKVPQSYEELIALPGVGPKMAHLFLQAADGVVLGIGVDTHVHRIAQR 167
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTP 109
WV SPE TR+ L+ WLP+E W IN LLVG GQTIC P
Sbjct: 168 FRWVPAT-----VKSPEDTRKALESWLPREHWGEINELLVGLGQTICAP 211
>gi|221058032|ref|XP_002261524.1| endonuclease iii homologue [Plasmodium knowlesi strain H]
gi|194247529|emb|CAQ40929.1| endonuclease iii homologue, putative [Plasmodium knowlesi strain H]
Length = 396
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 7/121 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I KYD DIP +L+ LL LPGIG K+AHL++ + +GI VD HVHRI NRL
Sbjct: 267 QISQILRDKYDYDIPHTLEGLLELPGIGQKVAHLILQTALDTHEGIAVDIHVHRISNRLN 326
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV T + T+ L+ ++P+ W +N LVGFGQ +C P C MC+V+
Sbjct: 327 WVC-------TKNESITQSKLESYVPRALWSELNKTLVGFGQVVCKAKSPHCTMCAVTNC 379
Query: 123 C 123
C
Sbjct: 380 C 380
>gi|339500707|ref|YP_004698742.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta caldaria DSM
7334]
gi|338835056|gb|AEJ20234.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta caldaria DSM
7334]
Length = 229
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ IA + + +YDG +P +L+ LL LPG+G K A+LV++ G+ ICVDTHVHRICNR
Sbjct: 106 LHTIADLLIHQYDGKVPDTLEVLLSLPGVGRKTANLVLSEGFGQ-DAICVDTHVHRICNR 164
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWV T PE+T + L+ LP+ W IN LLV FGQ IC P P C C ++
Sbjct: 165 TGWVV-------TKVPEETEQALRHILPRPYWRRINWLLVQFGQQICRPQSPLCSQCPLT 217
Query: 121 ELC 123
C
Sbjct: 218 SFC 220
>gi|452209864|ref|YP_007489978.1| Endonuclease III [Methanosarcina mazei Tuc01]
gi|452099766|gb|AGF96706.1| Endonuclease III [Methanosarcina mazei Tuc01]
Length = 205
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ I L Y+G +P ++ LL LPG+G K A+ V+ + + VDTHVHRI NR
Sbjct: 85 IKEISRILLEDYNGRVPDDMETLLKLPGVGRKTANCVLAHAFLKEDALAVDTHVHRISNR 144
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V T +PE+T L+ LP++ W +N LLV FGQ +C PI PRCG+C ++
Sbjct: 145 LGLVV-------TKNPEETEMELKKLLPQKYWRHVNILLVKFGQNVCRPISPRCGICVLN 197
Query: 121 ELCP 124
++CP
Sbjct: 198 DICP 201
>gi|312136836|ref|YP_004004173.1| endonuclease iii ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
gi|311224555|gb|ADP77411.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Methanothermus fervidus DSM 2088]
Length = 209
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKI+ I + KYDG +P +L ELL LPG+G K A+ V+ G+N I VDTHVHR+ NR
Sbjct: 87 IKKISKILINKYDGKVPKNLKELLKLPGVGRKTANCVLVYGFNE-DAIPVDTHVHRVANR 145
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V+ T +PE+T + L+ +P++ W +N L V FG+ IC P P+ C +
Sbjct: 146 IGLVN-------TKTPEETEKTLRKIIPRDYWKEVNKLFVEFGKNICKPTNPKHEKCPIK 198
Query: 121 ELC 123
+ C
Sbjct: 199 KFC 201
>gi|150864007|ref|XP_001382677.2| Endonuclease III [Scheffersomyces stipitis CBS 6054]
gi|149385263|gb|ABN64648.2| Endonuclease III [Scheffersomyces stipitis CBS 6054]
Length = 382
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 79/130 (60%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + + DIPS++++++ LPG+GPKM +L++ W GI VD H+HR+
Sbjct: 228 IKRACEMLRDNFQSDIPSTIEDVVTLPGVGPKMGYLLLQNAWGINSGIGVDVHLHRLAQM 287
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
W S+ + +PE TR L+ WLP + W INPLLVGFGQTIC P P C +C+++
Sbjct: 288 WSWTSKNAK-----TPEHTRVELEDWLPPKYWADINPLLVGFGQTICVPRAPNCDICTLA 342
Query: 121 E--LCPSAFK 128
LC ++ K
Sbjct: 343 TTGLCKASKK 352
>gi|21227382|ref|NP_633304.1| endonuclease III [Methanosarcina mazei Go1]
gi|20905743|gb|AAM30976.1| Endonuclease III [Methanosarcina mazei Go1]
Length = 205
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ I L Y+G +P ++ LL LPG+G K A+ V+ + + VDTHVHRI NR
Sbjct: 85 IKEISRILLEDYNGKVPDDMETLLKLPGVGRKTANCVLAHAFLKEDALAVDTHVHRISNR 144
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V T +PE+T L+ LP++ W +N LLV FGQ +C PI PRCG+C ++
Sbjct: 145 LGRVV-------TKNPEETEMELKKLLPQKYWRHVNILLVKFGQNVCRPISPRCGICILN 197
Query: 121 ELCP 124
++CP
Sbjct: 198 DICP 201
>gi|156100939|ref|XP_001616163.1| endonuclease III homologue [Plasmodium vivax Sal-1]
gi|148805037|gb|EDL46436.1| endonuclease III homologue, putative [Plasmodium vivax]
Length = 417
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 7/121 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I +YD DIP +L+ LL LPGIG K+AHL++ + +GI VD HVHRI NRL
Sbjct: 288 QISQILRDQYDYDIPHTLEGLLKLPGIGQKVAHLILQTALDTHEGIAVDIHVHRISNRLN 347
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV T + T+ L+ ++P+ W +N LVGFGQ +C P C MC+V++
Sbjct: 348 WVC-------TKNESATQSKLESFVPRTLWSELNKTLVGFGQVVCKAKSPHCNMCAVTDG 400
Query: 123 C 123
C
Sbjct: 401 C 401
>gi|253700536|ref|YP_003021725.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter sp. M21]
gi|251775386|gb|ACT17967.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter sp. M21]
Length = 220
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 69/112 (61%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y G +P L+ LL G+G K A+LV+ +G+ GICVD HVHRICNR G+V
Sbjct: 108 YQGRVPDELETLLTFKGVGRKTANLVLTLGYGK-PGICVDIHVHRICNRWGYV------- 159
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
KT +PEQT L+ LP E W+ IN LLV FGQ CTP+ PRC C + LC
Sbjct: 160 KTGTPEQTEGALRKKLPPEYWIIINDLLVTFGQNQCTPVSPRCSNCPLYALC 211
>gi|19173415|ref|NP_597218.1| ENDONUCLEASE III [Encephalitozoon cuniculi GB-M1]
gi|74621135|sp|Q8SRB8.1|NTH1_ENCCU RecName: Full=Endonuclease III homolog; AltName: Full=DNA-(apurinic
or apyrimidinic site) lyase
gi|19171004|emb|CAD26394.1| ENDONUCLEASE III [Encephalitozoon cuniculi GB-M1]
Length = 238
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 10/127 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA I K +P + +L+ LPGIG KMA L M+ N GI VDTHVHRI NR
Sbjct: 121 LKKIAEILREK---GLPREMKDLISLPGIGNKMALLYMSHACNRTVGISVDTHVHRISNR 177
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V +T E TR L+ +P++EW IN +LVGFGQTIC RPRC C +
Sbjct: 178 IGLV-------RTRDVESTRRELERVVPRKEWKTINNILVGFGQTICVAKRPRCEECCIR 230
Query: 121 ELCPSAF 127
CPS+
Sbjct: 231 GRCPSSL 237
>gi|355574942|ref|ZP_09044578.1| endonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818418|gb|EHF02910.1| endonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 230
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 82/135 (60%), Gaps = 7/135 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + G++P +++EL+ LPG+G K A++V+N + V GI VDTHV+RI +RL V
Sbjct: 100 AQAIIASFGGEVPGTMEELVTLPGVGRKTANIVLNKAFGVVDGIAVDTHVYRIASRLRLV 159
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
P +P Q L LP+E W P+N + FG+ CT RP+C C++ +LCP
Sbjct: 160 DAP-------TPAQAEPQLLDVLPRELWGPVNEQWIHFGRETCTSQRPKCDACALVDLCP 212
Query: 125 SAFKDSSSPSSKSRK 139
SAFK + P+++ R+
Sbjct: 213 SAFKANGKPNARPRR 227
>gi|404496830|ref|YP_006720936.1| endonuclease III-like DNA glycosidase [Geobacter metallireducens
GS-15]
gi|418065220|ref|ZP_12702594.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter
metallireducens RCH3]
gi|78194435|gb|ABB32202.1| endonuclease III-related DNA glycosidase, HhH-GPD superfamily
[Geobacter metallireducens GS-15]
gi|373562398|gb|EHP88609.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter
metallireducens RCH3]
Length = 218
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 74/124 (59%), Gaps = 11/124 (8%)
Query: 3 KIAPICLT---KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICN 59
+I IC T KYDG +P LDELL G+G K A+LV+ +G+ + ICVDTHVHRICN
Sbjct: 94 QILDICRTLVDKYDGQVPDDLDELLTFRGVGRKTANLVLTLGFGKL-AICVDTHVHRICN 152
Query: 60 RLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
R G+ S T +P +T L+ LP++ W IN LV FGQ CTP+ PRC C +
Sbjct: 153 RWGYTS-------TKTPAETEFALRAKLPQKYWPVINDYLVTFGQNQCTPVSPRCSTCVL 205
Query: 120 SELC 123
C
Sbjct: 206 VCFC 209
>gi|253745075|gb|EET01183.1| Endonuclease III [Giardia intestinalis ATCC 50581]
Length = 321
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MK +A +C+ Y GDIP L +L LPG GPKM HL++ + + V+GI VDTHV RI R
Sbjct: 157 MKNVAQVCIDSYGGDIPGDLAGILKLPGFGPKMGHLLVQIVYGQVEGIAVDTHVCRITQR 216
Query: 61 LGWVS----QPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGM 116
L WV +P K +P+ + L LPK++W IN LLVGFGQT+C P C
Sbjct: 217 LRWVEKGMCEP--DGKVLNPDDVAKQLVETLPKDKWGDINHLLVGFGQTVCKASFPECSR 274
Query: 117 CSVSELCPSAFKDSSSPSSKSRKSAQK 143
C ++ +K P + ++ ++
Sbjct: 275 CLIAGTGHCYYKPEPKPGTGQPRNRER 301
>gi|429123460|ref|ZP_19183993.1| endonuclease III [Brachyspira hampsonii 30446]
gi|426280734|gb|EKV57744.1| endonuclease III [Brachyspira hampsonii 30446]
Length = 233
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ + + Y+G +P +DELL L G+G K+A+LV+ ++ GICVDTHVHRI NR G
Sbjct: 98 EVSKMIIDDYNGQVPDEIDELLKLKGVGRKVANLVVTEAFDK-DGICVDTHVHRISNRFG 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V T +PE+T L+ LPKE W N LV +GQ +C PI P C C+VS+
Sbjct: 157 YVH-------TKTPEETEFALRDKLPKEYWRIYNDTLVVYGQNLCKPISPLCQKCTVSQY 209
Query: 123 CPSAFKD 129
C FK+
Sbjct: 210 C-DYFKN 215
>gi|384208101|ref|YP_005593821.1| endonuclease III [Brachyspira intermedia PWS/A]
gi|343385751|gb|AEM21241.1| endonuclease III [Brachyspira intermedia PWS/A]
Length = 233
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 11/131 (8%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ + + ++G +P +DELL L G+G K+A+LV+ ++ GICVDTHVHRI NR G
Sbjct: 98 EVSQMIIDDFNGQVPDEIDELLKLKGVGRKVANLVVTEAFDK-DGICVDTHVHRISNRFG 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V T +PE+T L+ LPKE W N LV +GQ +C PI P C C+VS+
Sbjct: 157 YVH-------TKTPEETEFALRDKLPKEYWRVYNDTLVVYGQNLCKPISPLCSKCTVSQY 209
Query: 123 CP---SAFKDS 130
C + +KD+
Sbjct: 210 CDYFKNEYKDN 220
>gi|383785899|ref|YP_005470468.1| DNA-(apurinic or apyrimidinic site) lyase [Fervidobacterium
pennivorans DSM 9078]
gi|383108746|gb|AFG34349.1| endonuclease III [Fervidobacterium pennivorans DSM 9078]
Length = 220
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 9/126 (7%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
++ I L KY G +P +L+ELL LPG+G K A++V++V + Q + VDTHVHRI NRLGW
Sbjct: 102 VSKIILEKYGGRVPDNLEELLSLPGVGRKTANIVLHVSFGQ-QALAVDTHVHRISNRLGW 160
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V+ T +PEQT E L+ L W P+N +V FG+ IC PI P+C C ++ C
Sbjct: 161 VN-------TKTPEQTEEELKKILDPNLWGPVNGSMVEFGKQICRPISPKCEECFLTACC 213
Query: 124 PSAFKD 129
FK+
Sbjct: 214 -KYFKE 218
>gi|445061978|ref|ZP_21374435.1| endonuclease III [Brachyspira hampsonii 30599]
gi|444506641|gb|ELV06946.1| endonuclease III [Brachyspira hampsonii 30599]
Length = 229
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 9/127 (7%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ + + ++G +P +DELL L G+G K+A+LV+ ++ GICVDTHVHRI NR G
Sbjct: 98 EVSKMIIDDFNGQVPDEIDELLKLKGVGRKVANLVVTEAFDK-DGICVDTHVHRISNRFG 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V+ T +PE+T L+ LPKE W N LV +GQ +C PI P C C+VS+
Sbjct: 157 YVN-------TKTPEETEFALRDKLPKEYWRVYNDTLVVYGQNLCKPISPLCSKCTVSQY 209
Query: 123 CPSAFKD 129
C FK+
Sbjct: 210 C-DYFKN 215
>gi|419759441|ref|ZP_14285740.1| endonuclease III [Thermosipho africanus H17ap60334]
gi|407515451|gb|EKF50196.1| endonuclease III [Thermosipho africanus H17ap60334]
Length = 203
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 77/121 (63%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I + KY G +P SL+ELL LPG+G K A++V+ V ++ + VDTHVHRI NRLG
Sbjct: 85 EISKIIVEKYSGIVPDSLEELLKLPGVGRKTANIVLYVSFSK-PALAVDTHVHRISNRLG 143
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV+ T +PE+T L LPK W PIN +V FG+ +C P+ P C +C +S+
Sbjct: 144 WVN-------TKTPEETEFKLMEILPKNLWGPINGSMVEFGKKVCKPVSPNCKICPISKY 196
Query: 123 C 123
C
Sbjct: 197 C 197
>gi|51246268|ref|YP_066152.1| exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila LSv54]
gi|50877305|emb|CAG37145.1| probable exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila
LSv54]
Length = 480
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 56/140 (40%), Positives = 86/140 (61%), Gaps = 9/140 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ P L ++ G +P ++ ELL LPG+G K A+LV+++ + ICVDTHVHRI N
Sbjct: 94 LKKL-PEALKEFKGVVPETMTELLRLPGVGRKTANLVLSIAFKK-PAICVDTHVHRIMNI 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V +T++P +T L+ LP+E W+P+N LLV GQ+IC P+ PRC C +
Sbjct: 152 WGYV-------ETATPLKTEMALREKLPEEFWIPVNSLLVSLGQSICRPVSPRCSECPLE 204
Query: 121 ELCPSAFKDSSSPSSKSRKS 140
+ CP + K++K+
Sbjct: 205 KECPQLGITPRKATLKAKKN 224
>gi|225620166|ref|YP_002721423.1| endonuclease III [Brachyspira hyodysenteriae WA1]
gi|225214985|gb|ACN83719.1| endonuclease III [Brachyspira hyodysenteriae WA1]
Length = 233
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 11/131 (8%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ + + + G +P +DELL L G+G K+A+LV+ ++ GICVDTHVHRI NR G
Sbjct: 98 EVSQMIIDDFKGQVPDEIDELLKLKGVGRKVANLVVTEAFDK-DGICVDTHVHRISNRFG 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V+ T +PE+T L+ LPKE W N LV +GQ +C PI P C C+VS+
Sbjct: 157 YVN-------TKTPEETEFALRDKLPKEYWRVYNDTLVVYGQNLCKPISPLCSKCTVSQY 209
Query: 123 CP---SAFKDS 130
C + +KD+
Sbjct: 210 CDYFKNEYKDT 220
>gi|385303995|gb|EIF48033.1| endonuclease iii [Dekkera bruxellensis AWRI1499]
Length = 260
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + KYDG+IP + +++ PG+GPKM +L + + W GI VDTH+ R+
Sbjct: 99 IKRTAEMLKEKYDGEIPKDVKKIMEFPGVGPKMGYLFLQIAWGICSGIGVDTHMARMAGW 158
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLP--KEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
WV P + PE R+ + L KEEW INP LVGFGQTIC P PRC +C+
Sbjct: 159 YHWV--PKWQXGKPEPEYVRKCFEKMLADHKEEWSVINPTLVGFGQTICLPXAPRCDICT 216
Query: 119 VSE--LCPSAFKDSSSPSSKSRKSAQK 143
+S LCP+ K +R+S K
Sbjct: 217 ISRTGLCPAVDKALLRRVEINRRSGVK 243
>gi|218960389|ref|YP_001740164.1| putative endonuclease III (nth-like) [Candidatus Cloacamonas
acidaminovorans]
gi|167729046|emb|CAO79957.1| putative endonuclease III (nth-like) [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 222
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++ + K++G IP +D+LL LPG+G K A+LV V + ICVD HVHRICNR
Sbjct: 103 LKELPKVLKEKFNGKIPEEIDDLLELPGVGRKTANLVRAVAFQK-PAICVDVHVHRICNR 161
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G++ +T +P +T L+ LP++ W+ N LV FGQ +CTP +P+C +C V+
Sbjct: 162 WGYI-------QTKTPLETEMTLRQKLPEKYWLNFNSYLVAFGQNLCTPRKPKCEICPVA 214
Query: 121 ELC 123
E C
Sbjct: 215 EFC 217
>gi|239618511|ref|YP_002941833.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
gi|239507342|gb|ACR80829.1| endonuclease III [Kosmotoga olearia TBF 19.5.1]
Length = 210
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I + Y+G +P +L+EL LPG+G K A++V+NV + + VDTHVHRI NRLG
Sbjct: 88 EISKIIVETYNGKVPDTLEELTKLPGVGRKTANIVLNVSFGKA-ALAVDTHVHRISNRLG 146
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W+ KT PEQ+ LQ LP+E W P+N +V FG+ +C P+ P+C C ++
Sbjct: 147 WI-------KTKQPEQSEFELQKILPEELWGPLNGSMVEFGRRVCKPVNPQCNECPINSC 199
Query: 123 C 123
C
Sbjct: 200 C 200
>gi|15643134|ref|NP_228177.1| endonuclease III [Thermotoga maritima MSB8]
gi|403252815|ref|ZP_10919120.1| endonuclease III [Thermotoga sp. EMP]
gi|418046300|ref|ZP_12684394.1| endonuclease III [Thermotoga maritima MSB8]
gi|8134433|sp|Q9WYK0.1|END3_THEMA RecName: Full=Endonuclease III; AltName: Full=DNA-(apurinic or
apyrimidinic site) lyase
gi|4980869|gb|AAD35453.1|AE001716_16 endonuclease III [Thermotoga maritima MSB8]
gi|351675853|gb|EHA59013.1| endonuclease III [Thermotoga maritima MSB8]
gi|402811577|gb|EJX26061.1| endonuclease III [Thermotoga sp. EMP]
Length = 213
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I + KY G +P SL+ELL LPG+G K A++V+ VG+ + VDTHVHRI NRLG
Sbjct: 84 EISRILVEKYGGRVPDSLEELLKLPGVGRKTANIVLWVGFKK-PALAVDTHVHRISNRLG 142
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV KT +PE+T E L+ LP++ W PIN +V FG+ IC P P C C +
Sbjct: 143 WV-------KTRTPEETEEALKKLLPEDLWGPINGSMVEFGRRICKPQNPLCEECFLKNH 195
Query: 123 C 123
C
Sbjct: 196 C 196
>gi|428171428|gb|EKX40345.1| hypothetical protein GUITHDRAFT_43372, partial [Guillardia theta
CCMP2712]
Length = 205
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 75/117 (64%), Gaps = 4/117 (3%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNN-VQGICVDTHVHRICNRLGWVSQPGR 69
++ G +P+S L+ L G+GPK+A+LV++VG + G+ VDTHVHR+ RLGW +
Sbjct: 92 RHGGRVPASFSSLVQLEGVGPKIANLVLSVGLGDESAGLVVDTHVHRVAGRLGWAVKSAD 151
Query: 70 KQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K E +R +L+ W+P+ E V +L+ FGQT+CTP+RP C +C V CPSA
Sbjct: 152 GGKA---EDSRRMLEEWVPESERVDFTLVLISFGQTVCTPLRPSCDVCPVRACCPSA 205
>gi|330837763|ref|YP_004412404.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
gi|329749666|gb|AEC03022.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerochaeta coccoides
DSM 17374]
Length = 237
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 8/122 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ + ++ G +P + L+ LPG+G K A+L +N+G+ + ICVD HVH I NR G
Sbjct: 116 EISKKLVEEHGGLVPPDKEALVSLPGVGTKTANLTLNLGFG-IDAICVDCHVHTIANRTG 174
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WVS T +PEQT + L+ LP+ W+P+N LLV +GQ ICT + PRC +C ++
Sbjct: 175 WVS-------TKNPEQTEKELEKILPRRFWIPLNELLVSYGQKICTSVSPRCSICPIAST 227
Query: 123 CP 124
CP
Sbjct: 228 CP 229
>gi|68067789|ref|XP_675828.1| endonuclease III [Plasmodium berghei strain ANKA]
gi|56495233|emb|CAH95547.1| endonuclease iii homologue, putative [Plasmodium berghei]
Length = 246
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 7/121 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
KI I KY+ DIP + +EL+ LPGIG K++ L++ N +GI VD HVHRI NRL
Sbjct: 115 KICQILKEKYNSDIPHNYEELIKLPGIGEKVSQLILQTALNKHEGIAVDIHVHRISNRLN 174
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV T + T+ L+ ++ KE W +N LLVGFGQ IC +P CG C++++
Sbjct: 175 WVY-------TKNELDTQIKLKSFVDKELWSELNHLLVGFGQVICKGKKPLCGKCTLTDY 227
Query: 123 C 123
C
Sbjct: 228 C 228
>gi|333910096|ref|YP_004483829.1| DNA-(apurinic or apyrimidinic site) lyase [Methanotorris igneus Kol
5]
gi|333750685|gb|AEF95764.1| DNA-(apurinic or apyrimidinic site) lyase [Methanotorris igneus Kol
5]
Length = 344
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 76/115 (66%), Gaps = 11/115 (9%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y+G +P+ LDELL LPG+G K A+LV+ + +++ GICVDTHVHRICNR G+V
Sbjct: 97 YNGKVPNELDELLKLPGVGRKTANLVITLAFDDY-GICVDTHVHRICNRWGYVE------ 149
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--SVSELCP 124
T +PE+T L+ LPK+ W IN LLV FG+ IC+P P+C C + E CP
Sbjct: 150 -TENPEETEMELRKKLPKKYWKIINNLLVVFGREICSPT-PKCEECFEEIRERCP 202
>gi|15605819|ref|NP_213196.1| endonuclease III [Aquifex aeolicus VF5]
gi|2982981|gb|AAC06594.1| endonuclease III [Aquifex aeolicus VF5]
Length = 213
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I I + KY G +P +L+ELL LPG+G K+A+LV++ G+N I VD HVHRI NR
Sbjct: 95 LKEIGKILIEKYGGKVPDTLEELLKLPGVGRKVANLVLSKGFNK-PAIVVDVHVHRIVNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
V KT +PE+T L +PKE W IN LLV FGQTIC P +P+C C V
Sbjct: 154 WCLV-------KTKTPEETERKLMEIVPKELWSDINYLLVAFGQTICLPRKPKCEECPVE 206
Query: 121 ELC 123
+ C
Sbjct: 207 KYC 209
>gi|336121854|ref|YP_004576629.1| DNA-(apurinic or apyrimidinic site) lyase [Methanothermococcus
okinawensis IH1]
gi|334856375|gb|AEH06851.1| DNA-(apurinic or apyrimidinic site) lyase [Methanothermococcus
okinawensis IH1]
Length = 397
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 82/126 (65%), Gaps = 11/126 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I Y+G IP+ L++L+ LPG+G K A+LV+ + +++ GICVDTHVHRICNR
Sbjct: 138 LKELAKIVKNDYNGKIPNRLEDLIKLPGVGRKTANLVITLAFDDY-GICVDTHVHRICNR 196
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
+V T +P +T L+ LPK+ W IN LLV +G+ +C+PI P+C C
Sbjct: 197 WEYVD-------TENPNETEAELRKKLPKKYWKIINNLLVVYGREVCSPI-PKCDKCFDE 248
Query: 119 VSELCP 124
+ E+CP
Sbjct: 249 IKEICP 254
>gi|45358100|ref|NP_987657.1| endonuclease III-like protein [Methanococcus maripaludis S2]
gi|44920857|emb|CAF30093.1| endonuclease III homologue [Methanococcus maripaludis S2]
Length = 356
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 11/126 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ I + KY+ ++P+S++EL+ LPG+G K A+LVM + +++ ICVDTHVHRI NR
Sbjct: 98 LKKLGEILIDKYNSNVPNSIEELVTLPGVGRKTANLVMTLAFDDY-AICVDTHVHRITNR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
+ T SPE T L+ LPK W IN LLV FGQ C+PI P+C C
Sbjct: 157 WYYAD-------TESPENTEMDLRKKLPKNYWKKINNLLVVFGQETCSPI-PKCDKCFSE 208
Query: 119 VSELCP 124
+ ++CP
Sbjct: 209 IKKICP 214
>gi|82596217|ref|XP_726170.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481466|gb|EAA17735.1| Drosophila melanogaster CG9272 gene product [Plasmodium yoelii
yoelii]
Length = 386
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 7/121 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
KI I KY+ DIP + +EL+ LPGIG K++ L++ N +GI VD HVHRI NRL
Sbjct: 253 KICQILKEKYNSDIPHNYEELIKLPGIGEKVSQLILQTALNKHEGIAVDIHVHRISNRLN 312
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV T + T+ L+ ++ KE W +N LLVGFGQ IC +P C C++++
Sbjct: 313 WVY-------TKNEADTQIKLKSFVDKELWSELNHLLVGFGQVICKGKKPLCEKCTLTDY 365
Query: 123 C 123
C
Sbjct: 366 C 366
>gi|374815134|ref|ZP_09718871.1| endonuclease III protein [Treponema primitia ZAS-1]
Length = 231
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 80/131 (61%), Gaps = 8/131 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ IA I + Y G +P+ +D LL LPG+G K A+LV+ ++ + GICVD HVHRI NR
Sbjct: 108 LQNIASIIIETYRGQVPADMDLLLALPGVGRKTANLVLTEAFD-MDGICVDVHVHRITNR 166
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + ++ +PE+T +L+ LP++ W IN LLV +GQ +C PI P C C ++
Sbjct: 167 LGAL-------QSKTPEETEMILRKILPRKYWKRINKLLVLYGQRVCRPISPFCSRCVIT 219
Query: 121 ELCPSAFKDSS 131
+ C D +
Sbjct: 220 DRCSKVTVDRA 230
>gi|254168132|ref|ZP_04874979.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|197622898|gb|EDY35466.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
Length = 211
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG +P +L++LL LPG+G K A++V++ ++ I VDTHVHRI NRLGWV+
Sbjct: 99 YDGKVPDNLEDLLKLPGVGRKTANIVLSRCYDK-DVIAVDTHVHRISNRLGWVN------ 151
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
T +PE+T L LPK+ W IN LLV FG+TIC P+ P+C +C + + C
Sbjct: 152 -TKTPEETERELMKVLPKKYWKDINELLVMFGRTICRPVAPKCDVCPIKKYC 202
>gi|189424391|ref|YP_001951568.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter lovleyi SZ]
gi|189420650|gb|ACD95048.1| DNA-(apurinic or apyrimidinic site) lyase [Geobacter lovleyi SZ]
Length = 218
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 11/125 (8%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
++I IC LT+Y+G +P +L++LL L G+G K A+LVM +G ++ QGICVD HVHRI
Sbjct: 93 EQIHAICRTLLTEYNGSVPDNLEQLLRLKGVGRKTANLVMTLG-HDKQGICVDIHVHRIT 151
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
NR G+V+ + SP++T + L+ LP E W IN LLV +GQ +C P+ P C C
Sbjct: 152 NRWGYVN-------SGSPDETEQFLREKLPAEYWKKINDLLVCYGQNLCYPVSPACSRCR 204
Query: 119 VSELC 123
+ + C
Sbjct: 205 LLDCC 209
>gi|70934485|ref|XP_738462.1| endonuclease III [Plasmodium chabaudi chabaudi]
gi|56514702|emb|CAH82012.1| endonuclease iii homologue, putative [Plasmodium chabaudi chabaudi]
Length = 272
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 7/121 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I I KY+ DIP S +EL+ LPGIG K++ L++ N +GI VD HVHRI NRL
Sbjct: 139 QICKILKEKYNSDIPHSYEELMKLPGIGEKVSQLILQTALNKHEGIAVDIHVHRISNRLN 198
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV T + T+ L+ ++ KE W +N LLVGFGQ IC +P C C++++
Sbjct: 199 WVY-------TKNESDTQIKLKSFVDKELWSELNHLLVGFGQVICKGKKPLCEKCTITDY 251
Query: 123 C 123
C
Sbjct: 252 C 252
>gi|148269689|ref|YP_001244149.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170288365|ref|YP_001738603.1| endonuclease III [Thermotoga sp. RQ2]
gi|281411600|ref|YP_003345679.1| endonuclease III [Thermotoga naphthophila RKU-10]
gi|147735233|gb|ABQ46573.1| endonuclease III [Thermotoga petrophila RKU-1]
gi|170175868|gb|ACB08920.1| endonuclease III [Thermotoga sp. RQ2]
gi|281372703|gb|ADA66265.1| endonuclease III [Thermotoga naphthophila RKU-10]
Length = 213
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I + +Y G +P SL+ELL LPG+G K A++V+ VG+ + VDTHVHRI NRLG
Sbjct: 84 EISRILVERYGGRVPDSLEELLKLPGVGRKTANIVLWVGFRK-PALAVDTHVHRISNRLG 142
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV KT +PE+T E L+ LP++ W PIN +V FG+ IC P P C C +
Sbjct: 143 WV-------KTRTPEETEEALKKLLPEDLWGPINGSMVEFGRRICKPQNPLCEECFLKNH 195
Query: 123 C 123
C
Sbjct: 196 C 196
>gi|452944081|ref|YP_007500246.1| DNA-(apurinic or apyrimidinic site) lyase, MutY [Hydrogenobaculum
sp. HO]
gi|452882499|gb|AGG15203.1| DNA-(apurinic or apyrimidinic site) lyase, MutY [Hydrogenobaculum
sp. HO]
Length = 224
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I + YD IP ++L+ LPG+G K+A+LV+ G+ + ICVD HVHRI NR
Sbjct: 95 LKELAKIIVQSYDSKIPKEKEKLMELPGVGLKVANLVLAEGFG-IPAICVDVHVHRITNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
V KT +PEQT E L+ LPK+ W+ IN LV FGQ IC P +P C +C +
Sbjct: 154 WCLV-------KTKTPEQTEEALKNILPKKYWIDINRYLVSFGQRICKPTKPLCEICPIE 206
Query: 121 ELC 123
C
Sbjct: 207 RFC 209
>gi|410670631|ref|YP_006923002.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Methanolobus psychrophilus R15]
gi|409169759|gb|AFV23634.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Methanolobus psychrophilus R15]
Length = 204
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 77/121 (63%), Gaps = 8/121 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I+ I L Y G +P S++ELL LPG+G K A+ V+ + I VDTHVHRI NR G
Sbjct: 89 ISRIMLKDYGGIVPDSMNELLKLPGVGRKTANCVLGYAFEK-DVIAVDTHVHRISNRFGL 147
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V KTSSP++T + L+ + +++W IN L+V FGQ +C P+ PRCG C ++++C
Sbjct: 148 V-------KTSSPDETEKELEKVVSRQDWKDINGLMVLFGQNVCRPMSPRCGECRLNDIC 200
Query: 124 P 124
P
Sbjct: 201 P 201
>gi|288817355|ref|YP_003431702.1| endonuclease III [Hydrogenobacter thermophilus TK-6]
gi|384128125|ref|YP_005510738.1| DNA-(apurinic or apyrimidinic site) lyase [Hydrogenobacter
thermophilus TK-6]
gi|288786754|dbj|BAI68501.1| endonuclease III [Hydrogenobacter thermophilus TK-6]
gi|308750962|gb|ADO44445.1| DNA-(apurinic or apyrimidinic site) lyase [Hydrogenobacter
thermophilus TK-6]
Length = 216
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 8/128 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K IA Y +P+ L++LL L G+G K+A+LV++ G+ + ICVDTHVHRI NR
Sbjct: 95 LKSIAEEIKKNYSSQVPNKLEDLLKLKGVGRKVANLVLSEGYG-IPAICVDTHVHRITNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+ K+ PE+T L LP++ W+ N LLV FGQT+C P++P CG+C +
Sbjct: 154 WCLI-------KSKDPEETERKLTEILPEKYWIEFNKLLVAFGQTLCKPVKPLCGVCPIR 206
Query: 121 ELCPSAFK 128
E C FK
Sbjct: 207 EYCEYEFK 214
>gi|222444488|ref|ZP_03607003.1| hypothetical protein METSMIALI_00099 [Methanobrevibacter smithii
DSM 2375]
gi|261350964|ref|ZP_05976381.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
gi|222434053|gb|EEE41218.1| endonuclease III [Methanobrevibacter smithii DSM 2375]
gi|288860304|gb|EFC92602.1| endonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 208
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+++ I + +Y G++P +L EL+ LPG+G K A+ V+ + + I VDTHVHRI NR
Sbjct: 91 IKEVSRILIDQYGGEVPDNLKELVELPGVGRKTANCVLVYAFE-LPAIPVDTHVHRISNR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V+ T +PEQT L PKE W+ +N L+V FGQTIC P+ P+C MC +S
Sbjct: 150 IGLVN-------TKTPEQTEVELAKIAPKELWIKLNDLMVQFGQTICKPMSPQCEMCPIS 202
Query: 121 ELC 123
++C
Sbjct: 203 DIC 205
>gi|406982493|gb|EKE03804.1| Endonuclease III [uncultured bacterium]
Length = 211
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 8/120 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L KY+G +P +DELL L G+G K A+LV++ G+ ICVDTHVHRI NRLG+V
Sbjct: 100 LDKYNGIVPDEIDELLKLKGVGRKTANLVVSKGYGK-PAICVDTHVHRISNRLGFV---- 154
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
KT +P++T L+ LPK+ W IN L+V GQ C P+ P+C +C++ C K
Sbjct: 155 ---KTKNPDETEMALREKLPKKYWNKINDLMVTHGQNTCKPVNPKCNICTIEPYCQKIIK 211
>gi|148642332|ref|YP_001272845.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
gi|148551349|gb|ABQ86477.1| endonuclease III [Methanobrevibacter smithii ATCC 35061]
Length = 210
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+++ I + +Y G++P +L EL+ LPG+G K A+ V+ + + I VDTHVHRI NR
Sbjct: 93 IKEVSRILIDQYGGEVPDNLKELVELPGVGRKTANCVLVYAFE-LPAIPVDTHVHRISNR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V+ T +PEQT L PKE W+ +N L+V FGQTIC P+ P+C MC +S
Sbjct: 152 IGLVN-------TKTPEQTEVELAKIAPKELWIKLNDLMVQFGQTICKPMSPQCEMCPIS 204
Query: 121 ELC 123
++C
Sbjct: 205 DIC 207
>gi|296125919|ref|YP_003633171.1| DNA-(apurinic or apyrimidinic site) lyase [Brachyspira murdochii
DSM 12563]
gi|296017735|gb|ADG70972.1| DNA-(apurinic or apyrimidinic site) lyase [Brachyspira murdochii
DSM 12563]
Length = 227
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ + + + G +P +DELL L G+G K+A+LV+ ++ GICVDTHVHRI NR G
Sbjct: 98 EVSKMIIDDFGGKVPDEIDELLKLKGVGRKVANLVVTEAFDK-DGICVDTHVHRISNRFG 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V T +PE+T L+ LPKE W N LV +GQ +C PI P C C+VS+
Sbjct: 157 YVH-------TKTPEETEFALRDKLPKEYWRIYNDTLVVYGQNLCKPISPLCSKCTVSQY 209
Query: 123 CPSAFKDS 130
C FK+
Sbjct: 210 C-DYFKNE 216
>gi|435850481|ref|YP_007312067.1| putative endoIII-related endonuclease [Methanomethylovorans
hollandica DSM 15978]
gi|433661111|gb|AGB48537.1| putative endoIII-related endonuclease [Methanomethylovorans
hollandica DSM 15978]
Length = 208
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 8/123 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I L +Y+G +P ++++LL LPG+G K A+ V+ + I VDTHVHRI NRL
Sbjct: 87 EISRILLQEYEGKVPDNINDLLKLPGVGRKTANCVLTYAFRK-DAIAVDTHVHRISNRLC 145
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V+ T++PE+T L+ +P+E W +N LLV FGQ +C PI P+C +C + +L
Sbjct: 146 LVT-------TNAPEETEVELERVVPRELWQYVNELLVRFGQDVCRPISPKCDICVLEDL 198
Query: 123 CPS 125
CPS
Sbjct: 199 CPS 201
>gi|197118690|ref|YP_002139117.1| endonuclease III-like DNA glycosidase [Geobacter bemidjiensis Bem]
gi|197088050|gb|ACH39321.1| endonuclease III-related DNA glycosidase, HhH-GPD superfamily
[Geobacter bemidjiensis Bem]
Length = 220
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 69/112 (61%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G +P L+ LL G+G K A+LV+ +G+ GICVD HVHRICNR G+V
Sbjct: 108 HQGRVPDELETLLTFKGVGRKTANLVLTLGYGK-PGICVDIHVHRICNRWGYV------- 159
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
KT +PEQT L+ LP E W+ IN LLV FGQ CTP+ PRC C + LC
Sbjct: 160 KTVNPEQTEGALRKKLPPEYWIIINDLLVTFGQNQCTPVSPRCSTCPLYALC 211
>gi|91201723|emb|CAJ74783.1| similar to endonuclease III [Candidatus Kuenenia stuttgartiensis]
Length = 217
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 11/126 (8%)
Query: 4 IAPIC--LTK-YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
I IC LTK Y+G +P +DELL L G+G K A+LV+++G+ GICVD HVHRI NR
Sbjct: 94 IQEICETLTKDYEGKVPDEIDELLKLNGVGRKTANLVVSLGYKK-PGICVDVHVHRINNR 152
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G++ KT +P +T L+ LP + W+ IN LLV +GQ IC PI P+C +C V+
Sbjct: 153 WGYI-------KTKTPAETECALRKKLPAKYWLCINDLLVTYGQNICVPISPKCSLCPVN 205
Query: 121 ELCPSA 126
C A
Sbjct: 206 SYCKKA 211
>gi|297569473|ref|YP_003690817.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
gi|296925388|gb|ADH86198.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
Length = 490
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/120 (46%), Positives = 77/120 (64%), Gaps = 9/120 (7%)
Query: 6 PICLT-KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
P LT K+ G IP++++EL+ LPG+G K A+LV+ V + ICVDTHVHRI N G+V
Sbjct: 102 PAALTAKFRGKIPATVEELVQLPGVGRKTANLVVAVAFER-PAICVDTHVHRIMNIWGYV 160
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ T++PE T + L+ LP+ W IN LLV FGQ IC P+ P C C +++LCP
Sbjct: 161 N-------TTTPEATEKALRAKLPQPYWRRINSLLVAFGQEICRPVGPHCDRCPLAQLCP 213
>gi|448739187|ref|ZP_21721202.1| endonuclease III [Halococcus thailandensis JCM 13552]
gi|445799782|gb|EMA50151.1| endonuclease III [Halococcus thailandensis JCM 13552]
Length = 228
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A I + +YDGD+P ++ EL LPG+G K A++V+ G++ V+GI VDTHV R+ R
Sbjct: 95 IRESAQIVVEEYDGDVPDTMGELTELPGVGRKTANVVLQHGYDVVEGIVVDTHVQRLTRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE+ E L ++P E W L + G+ CT P CG C +
Sbjct: 155 LGLTEE-------QRPERIEEDLMEFVPAERWQAFTHLFIDHGRATCTARNPECGDCVLE 207
Query: 121 ELCPSAFKDSSS 132
++CPS+ DSS+
Sbjct: 208 DICPSSKVDSST 219
>gi|268323381|emb|CBH36969.1| putative endonuclease [uncultured archaeon]
Length = 213
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 8/120 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I+ + YD +P+ +ELL L G+G K A++V+ + +N GI VDTHVHRI NRLG
Sbjct: 93 ISHTLVANYDSKVPAEREELLKLKGVGRKTANIVITMAYNK-PGIAVDTHVHRISNRLGL 151
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V+ T P QT LQ L K+ W +N LLV GQTICTPI P+C +C +++ C
Sbjct: 152 VA-------TKDPYQTELALQKALAKQHWKVLNELLVLHGQTICTPISPKCSICPITKYC 204
>gi|294496431|ref|YP_003542924.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
gi|292667430|gb|ADE37279.1| DNA-(apurinic or apyrimidinic site) lyase [Methanohalophilus mahii
DSM 5219]
Length = 206
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ I + +YD +P+S+ ELL LPG+G K A+ V++ + + I VDTHVHRI NR
Sbjct: 85 IKEISQILIDEYDSQVPASMVELLKLPGVGRKTANCVLSYAFLE-KAIAVDTHVHRISNR 143
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V T +P+QT LQ +P W +N L V FG+T+C P+ P C +C++
Sbjct: 144 LGLVD-------TVTPDQTEIELQKQVPVSYWREVNELFVQFGKTVCKPLSPACEVCAIE 196
Query: 121 ELC 123
+LC
Sbjct: 197 DLC 199
>gi|257075651|ref|ZP_05570012.1| endonuclease III [Ferroplasma acidarmanus fer1]
Length = 217
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+IA I +Y G +P + DEL+ LPG G K A++V+ G+N + I VDTHV R+ NR+G
Sbjct: 88 EIARIINHEYGGKVPDTHDELVKLPGTGSKTANIVLTQGFN-IPAIAVDTHVFRVSNRIG 146
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V T +P++T E L+ +P E V NP++V FG+ IC P+ PRC +C VS+
Sbjct: 147 LVH-------TKNPDETEEALKSIVPLEYQVEFNPVMVEFGKNICKPVSPRCNICPVSDC 199
Query: 123 CPS-AFKDSSSPSSKSRK 139
C A K++ + KS+K
Sbjct: 200 CDYFAQKNTGDTAIKSKK 217
>gi|188997187|ref|YP_001931438.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932254|gb|ACD66884.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 215
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 76/123 (61%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ I + K++ +P L+ LL G+G K A+LV++ G+ ICVD HVHRI NR
Sbjct: 95 IKEISKILVEKFNSKVPDDLETLLSFKGVGRKTANLVLSEGFGK-PAICVDVHVHRISNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V KT +PE+T L LPK+ W IN +LV FGQTIC P++P+C C +
Sbjct: 154 IGLV-------KTKNPEETEFKLMKILPKKYWKDINFVLVAFGQTICKPVKPKCKECPIV 206
Query: 121 ELC 123
+ C
Sbjct: 207 KYC 209
>gi|11499282|ref|NP_070520.1| endonuclease III [Archaeoglobus fulgidus DSM 4304]
gi|2648861|gb|AAB89556.1| endonuclease III (nth) [Archaeoglobus fulgidus DSM 4304]
Length = 209
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 75/119 (63%), Gaps = 9/119 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A + Y ++P S +EL+ LPGIG K A++V+ ++++ I VDTHVHRI NR
Sbjct: 91 LKELAKKLVEDYSSEVPLSFEELVKLPGIGRKSANVVL--AYSDIPAIPVDTHVHRIANR 148
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
LGW +T+ PE+T EVL+ P E W +N +VGFGQT+C P +P C C +
Sbjct: 149 LGWA-------RTTKPEETEEVLKRLFPLEFWEKVNRAMVGFGQTVCKPQKPLCDECPI 200
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 53/119 (44%), Positives = 73/119 (61%), Gaps = 8/119 (6%)
Query: 6 PICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVS 65
P L ++ G +P +D L+ LPG+G K A+LV+ V ++ ICVDTHVHRI N G+V
Sbjct: 98 PGALQRFGGVVPDDIDSLVQLPGVGRKTANLVVAVAFHK-PAICVDTHVHRIMNIWGYV- 155
Query: 66 QPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+T++P QT VL+ LP++ W+ IN LLV FGQ C P RP C C ++ CP
Sbjct: 156 ------QTTTPLQTEMVLRQKLPRQYWIRINGLLVAFGQGTCKPQRPHCDRCVIAAYCP 208
>gi|288560832|ref|YP_003424318.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
gi|288543542|gb|ADC47426.1| endonuclease III Nth [Methanobrevibacter ruminantium M1]
Length = 215
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ I + +Y G++P +DE+L LPG+G K A+ V+ + + I VDTHVHRI NR G
Sbjct: 95 EVSRILIDQYGGEVPREMDEMLKLPGVGRKTANCVIVFAFQDA-AIPVDTHVHRISNRWG 153
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
T PE+T +VL +PK+ WV +N L+V FGQTIC PI P+C C +S+L
Sbjct: 154 IAD-------TKDPEETEQVLMEKVPKDLWVDLNDLMVQFGQTICRPIGPQCDKCPISDL 206
Query: 123 C 123
C
Sbjct: 207 C 207
>gi|254168035|ref|ZP_04874883.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|289596043|ref|YP_003482739.1| DNA-(apurinic or apyrimidinic site) lyase [Aciduliprofundum boonei
T469]
gi|197623078|gb|EDY35645.1| base excision DNA repair protein, HhH-GPD family [Aciduliprofundum
boonei T469]
gi|289533830|gb|ADD08177.1| DNA-(apurinic or apyrimidinic site) lyase [Aciduliprofundum boonei
T469]
Length = 211
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 73/112 (65%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG +P +L+ELL LPG+G K A++V++ ++ I VDTHVHRI NRLGWV+
Sbjct: 99 YDGKVPDNLEELLKLPGVGRKTANIVLSRCYDK-DVIAVDTHVHRISNRLGWVN------ 151
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
T +PE+T L L K+ W IN LLV FG+TIC P+ P+C +C + + C
Sbjct: 152 -TKTPEETERELMKVLLKKYWKDINELLVMFGRTICRPVAPKCDVCPIKKYC 202
>gi|237756607|ref|ZP_04585124.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691238|gb|EEP60329.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
Length = 215
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ I + K++ +P L+ LL G+G K A+LV++ G+ ICVD HVHRI NR
Sbjct: 95 IKEISKILVEKFNSKVPDDLETLLSFKGVGRKTANLVLSEGFGK-PAICVDVHVHRISNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V KT +PE+T L LPK+ W IN + V FGQTIC P++P+C C +
Sbjct: 154 IGLV-------KTKNPEETEFKLMEILPKKYWKDINFVFVAFGQTICKPVKPKCNQCPII 206
Query: 121 ELC 123
+ C
Sbjct: 207 KYC 209
>gi|440494220|gb|ELQ76619.1| Endonuclease III [Trachipleistophora hominis]
Length = 201
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 74/129 (57%), Gaps = 7/129 (5%)
Query: 2 KKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRL 61
K I I + + + DEL+ LPGIG K+A L + + N GI VDTHVHRI NRL
Sbjct: 79 KNIKMIAEYFVNRKMATEYDELVKLPGIGNKIAFLYLQIACNKTVGIGVDTHVHRIFNRL 138
Query: 62 GWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE 121
G V+ T +PE+TR L+ KEEW IN ++VGFGQT+C P +P+C C V+
Sbjct: 139 GVVT-------TKTPEETRIQLEQIYDKEEWGQINKVMVGFGQTVCLPKKPKCNECVVNY 191
Query: 122 LCPSAFKDS 130
C K S
Sbjct: 192 CCKYGKKFS 200
>gi|306490881|gb|ADM94999.1| predicted EndoIII-related endonuclease [uncultured candidate
division JS1 bacterium]
Length = 146
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA I L KY G +P +L++L+ LPG+G K A+LV+ + ++ I VDTHVHRI NR
Sbjct: 23 IKKIANILLEKYGGMVPDNLNDLIQLPGVGRKTANLVLGIAFHR-NTITVDTHVHRISNR 81
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V KTS+P++T L + LP++ W+ N LV GQ IC PI P+C C +
Sbjct: 82 LGIV-------KTSNPKETELDLMMILPQKYWICFNTYLVAHGQKICNPIIPKCSQCKIM 134
Query: 121 ELC 123
C
Sbjct: 135 PYC 137
>gi|409046617|gb|EKM56097.1| hypothetical protein PHACADRAFT_162146 [Phanerochaete carnosa
HHB-10118-sp]
Length = 191
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 67/104 (64%), Gaps = 5/104 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A ++D D+P ++DEL LPG+GPKMA L ++V WN GI VD HVHRI NR
Sbjct: 92 IKQTAQKLRDEFDSDVPKTVDELCSLPGVGPKMAFLCLHVAWNINVGIGVDVHVHRITNR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQ 104
LGW P T +PE+TR LQ WLPKE IN LVGFGQ
Sbjct: 152 LGWHKPP-----TKTPEETRLNLQSWLPKELHAEINHRLVGFGQ 190
>gi|328860800|gb|EGG09905.1| hypothetical protein MELLADRAFT_26899 [Melampsora larici-populina
98AG31]
Length = 228
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 76/128 (59%), Gaps = 13/128 (10%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A + + D+P +L + +GPKMA L + W+ +GI VDTHVHRI NR
Sbjct: 111 LKEMAEDLYSFHQSDVPKTLGK-----RVGPKMAFLALASAWSINEGIGVDTHVHRITNR 165
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW P T+ PEQTR LQ WLPK IN LLVGFGQ IC PI P+C C V
Sbjct: 166 LGWHLPP-----TTEPEQTRLNLQSWLPKNLHQEINHLLVGFGQLICLPIGPKCETCFVG 220
Query: 121 E---LCPS 125
+ LCPS
Sbjct: 221 QIEGLCPS 228
>gi|326510413|dbj|BAJ87423.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 138
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 60/69 (86%)
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
QKT++PEQTR L+ WLPK+EW PINPLLVGFGQTICTP+RP+CG C ++ +CPSAFK++
Sbjct: 64 QKTTTPEQTRMSLEKWLPKDEWEPINPLLVGFGQTICTPLRPKCGSCGINTICPSAFKEA 123
Query: 131 SSPSSKSRK 139
SSP+ K +K
Sbjct: 124 SSPNPKQKK 132
>gi|154411860|ref|XP_001578964.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
gi|121913166|gb|EAY17978.1| HhH-GPD superfamily base excision DNA repair protein [Trichomonas
vaginalis G3]
Length = 239
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A C KYD D+P +L E G+G KM L M WN GI VD HVHRI N
Sbjct: 106 IREAAKRCHEKYDDDVPKTLKEFTEFKGVGIKMGTLAMARCWNEQIGIGVDVHVHRISNL 165
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT+ P++T LQ LPK+ W +N LVGFGQT+C + +C C +S
Sbjct: 166 LGWV-------KTNHPDETETALQKVLPKDIWPEVNHCLVGFGQTVCGSKKRKCEECPIS 218
Query: 121 ELC 123
C
Sbjct: 219 STC 221
>gi|332157727|ref|YP_004423006.1| endonuclease III [Pyrococcus sp. NA2]
gi|331033190|gb|AEC51002.1| endonuclease III [Pyrococcus sp. NA2]
Length = 220
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 7/122 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ I L KYDG +P DELL LPGIG K A++V+ G+ + I VDTHV+RI RLG
Sbjct: 98 EVSRILLEKYDGKVPDKFDELLKLPGIGRKCANIVLAYGFG-IPAIPVDTHVYRISRRLG 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+SPE+ E L+ +P+EEW+ +N +V G+ IC P+ PRC C + +L
Sbjct: 157 LAPW------DASPEEVEERLKSLIPREEWIYVNHAMVDHGKRICRPVEPRCNECPLRDL 210
Query: 123 CP 124
CP
Sbjct: 211 CP 212
>gi|85860567|ref|YP_462769.1| endonuclease III N [Syntrophus aciditrophicus SB]
gi|85723658|gb|ABC78601.1| endonuclease III N [Syntrophus aciditrophicus SB]
Length = 206
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 72/119 (60%), Gaps = 11/119 (9%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
++I IC + ++ +P SL++LL L G+G K A+LV+++G+ ICVDTHVHRI
Sbjct: 93 RQIREICRDLIERFSSRVPDSLEDLLSLKGVGQKTANLVLSLGFEK-DAICVDTHVHRIS 151
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC 117
NRLG VS T +PEQT LQ LP+ W N LLV FGQ +C P+ P C C
Sbjct: 152 NRLGLVS-------TKTPEQTESALQNVLPRRYWSRYNTLLVSFGQRVCRPLSPLCSSC 203
>gi|15678789|ref|NP_275906.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
gi|2621854|gb|AAB85267.1| endonuclease III [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 233
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 77/128 (60%), Gaps = 8/128 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++++ I L +YDG +P ++ELL LPG+G K A+ V+ + I VDTHVHRI NR
Sbjct: 105 VREVSRIILEEYDGKVPDDINELLKLPGVGRKTANCVLVYAFGR-PAIPVDTHVHRISNR 163
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V T +PE+T L +P+E W+ +N L+V FGQ IC P+ PR C ++
Sbjct: 164 IGLVD-------TRTPEETERALMKVIPREYWIELNDLMVQFGQDICRPLGPRHEECPIA 216
Query: 121 ELCPSAFK 128
+ C F+
Sbjct: 217 DHCDYYFR 224
>gi|13541635|ref|NP_111323.1| endonuclease III [Thermoplasma volcanium GSS1]
gi|14325034|dbj|BAB59960.1| endonuclease III [Thermoplasma volcanium GSS1]
Length = 215
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 77/128 (60%), Gaps = 8/128 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
IA I +Y +P+S+D+LL LPG+G K A +V+ G + I VDTHV RI +R+GW
Sbjct: 93 IAQIIRDEYGSKVPASMDQLLSLPGVGVKTASVVLAEGLG-IPMIAVDTHVFRISHRIGW 151
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
S + +PEQT + L +PK+ W+ NP LV FG+ +C P+ P+C MC ++E C
Sbjct: 152 SS-------SKTPEQTAQDLMQIIPKDLWIGFNPTLVEFGKAVCRPVSPKCSMCRINEFC 204
Query: 124 PSAFKDSS 131
K +S
Sbjct: 205 EYYKKKNS 212
>gi|18977601|ref|NP_578958.1| glycosylase [Pyrococcus furiosus DSM 3638]
gi|397651727|ref|YP_006492308.1| endonuclease III [Pyrococcus furiosus COM1]
gi|18893320|gb|AAL81353.1| glycosylase putative; mutY-nth family [Pyrococcus furiosus DSM
3638]
gi|393189318|gb|AFN04016.1| endonuclease III [Pyrococcus furiosus COM1]
Length = 225
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 7/118 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I L KY G +P++L+EL+ LPGIG K A++V+ G+ I VDTHV+RI RLG
Sbjct: 111 IILYKYGGKVPNTLEELMKLPGIGRKCANIVLAYGFGK-PAIPVDTHVYRISRRLGLAPI 169
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
S+PE+ E+L+ +P EEW+ +N +V G++IC PI+P+C +C ++ELCP
Sbjct: 170 ------NSTPEKVEEILKTLIPVEEWIYVNHAMVDHGKSICRPIKPKCELCPLNELCP 221
>gi|150020336|ref|YP_001305690.1| endonuclease III [Thermosipho melanesiensis BI429]
gi|149792857|gb|ABR30305.1| endonuclease III [Thermosipho melanesiensis BI429]
Length = 203
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I + K+ G +P +L+ELL LPG+G K A++V+ V ++ + VDTHVHRI NRLG
Sbjct: 85 EISKIIVNKFSGKVPDTLEELLTLPGVGRKTANIVLYVSFSK-PALAVDTHVHRISNRLG 143
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W KT +P +T L LPK+ W PIN +V FG+ +C P P+C +C + +
Sbjct: 144 WC-------KTKNPNETEFALMKLLPKDLWGPINGSMVKFGKNVCLPRNPKCDICPIYDY 196
Query: 123 C 123
C
Sbjct: 197 C 197
>gi|302340587|ref|YP_003805793.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta smaragdinae
DSM 11293]
gi|301637772|gb|ADK83199.1| DNA-(apurinic or apyrimidinic site) lyase [Spirochaeta smaragdinae
DSM 11293]
Length = 224
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 75/122 (61%), Gaps = 8/122 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++ I + + +P+ D LL LPG+G K A+LV+ + + + ICVD HVHRI NRLG
Sbjct: 103 QLKTIAMKLKETGVPAERDRLLALPGVGRKTANLVLGLAFG-IPAICVDVHVHRISNRLG 161
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
++ T++PE++ L+ LP+ W+ IN L V FGQT+C P+ P C C ++++
Sbjct: 162 LIT-------TTTPEKSEMALEAILPRRYWIEINTLFVAFGQTLCKPVSPLCSRCPLADV 214
Query: 123 CP 124
CP
Sbjct: 215 CP 216
>gi|20093393|ref|NP_619468.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
gi|19918762|gb|AAM07948.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
Length = 216
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ I L +YDG++P ++ LL LPG+G K A+ V+ + + VDTHVHRI NR
Sbjct: 97 IKEISGILLEEYDGEVPDDMETLLKLPGVGRKTANCVLAHAFLK-DALAVDTHVHRISNR 155
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V +T +PE+T L+ P++ W IN LLV GQ IC PI P+C +C ++
Sbjct: 156 LGLV-------ETKTPEETELELKKIFPQKYWKHINLLLVKLGQNICRPISPKCEVCVLN 208
Query: 121 ELCP 124
++CP
Sbjct: 209 DMCP 212
>gi|406981558|gb|EKE03014.1| Endonuclease III [uncultured bacterium]
Length = 257
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKI+ I L + +G++P++++ LL G+G K A+LV+++G +N+ I VDTHVH++ NR
Sbjct: 128 IKKISKIILEQLNGEVPATMEGLLAFYGVGRKTANLVLSLG-HNIPAIAVDTHVHKVTNR 186
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+V KT +PEQT L+ LP+ W+ INPL V G+ IC RP C +C +
Sbjct: 187 LGYV-------KTKTPEQTETALKEKLPQPYWIKINPLFVTHGKQICKTGRPWCDICPII 239
Query: 121 ELC 123
+ C
Sbjct: 240 DYC 242
>gi|389844120|ref|YP_006346200.1| endonuclease III [Mesotoga prima MesG1.Ag.4.2]
gi|387858866|gb|AFK06957.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Mesotoga prima MesG1.Ag.4.2]
Length = 220
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 10/139 (7%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + + G +P +L+EL+ +PG+G K A++V+NV + + + VDTHVHRI NRLGWV
Sbjct: 92 ARMIVESFAGVVPDTLEELVTIPGVGRKTANIVLNVSFKK-EALAVDTHVHRIANRLGWV 150
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
KT +P+ T L LP W P+N +V FG+ IC PI P+C +C +S+ C
Sbjct: 151 -------KTKTPDDTEFALMKILPPSIWGPVNGSMVEFGREICRPIGPKCNLCGISQCC- 202
Query: 125 SAFKDSSSPSSKSRKSAQK 143
+ S + R+ QK
Sbjct: 203 -EYFSLVSEQTTERQKQQK 220
>gi|94263508|ref|ZP_01287320.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
gi|93456146|gb|EAT06289.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
Length = 216
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ ++ I K+ G IP++++EL+ LPG+G K A+LV+ V + ICVDTHVHRI N
Sbjct: 98 LARLPGILAAKFGGQIPATVEELIQLPGVGRKTANLVVAVAFEQ-PAICVDTHVHRIMNI 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V +T++PE T + L+ LP W IN LLV FGQ IC P+ C C ++
Sbjct: 157 WGYV-------RTATPEATEKALRAKLPLVHWRRINSLLVAFGQEICRPVGAHCDRCPLA 209
Query: 121 ELCP 124
+LCP
Sbjct: 210 DLCP 213
>gi|333987518|ref|YP_004520125.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
gi|333825662|gb|AEG18324.1| HhH-GPD family protein [Methanobacterium sp. SWAN-1]
Length = 212
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+++ I +YD +P + ELL LPG+G K A+ V+ G++ I VD HVHRI NR
Sbjct: 89 VKEVSKIIHEEYDDVVPDDMKELLSLPGVGRKTANCVLVYGFHK-DAIPVDVHVHRISNR 147
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V T +PEQT L +P++ W+P+N LLV FGQTIC PI P+ +C ++
Sbjct: 148 IGLVD-------TKTPEQTEVELMKTVPRKYWLPLNDLLVQFGQTICRPIGPKHEICPIA 200
Query: 121 ELC 123
+LC
Sbjct: 201 DLC 203
>gi|333999302|ref|YP_004531914.1| endonuclease III protein [Treponema primitia ZAS-2]
gi|333738187|gb|AEF83677.1| endonuclease III protein [Treponema primitia ZAS-2]
Length = 263
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++KIA I + Y G +P+ ++ LL LPG+G K A+LV+ ++ + GICVD HVHRI NR
Sbjct: 140 LQKIAAILMESYKGQVPADMELLLALPGVGRKTANLVLTEAFD-MDGICVDVHVHRISNR 198
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + ++ +PE T +L+ LPK+ W IN LLV +GQ +C PI P C C +
Sbjct: 199 LGVL-------ESKNPEGTEMILREILPKKYWKRINILLVLYGQRVCRPISPFCSRCVMP 251
Query: 121 ELC 123
LC
Sbjct: 252 GLC 254
>gi|223477172|ref|YP_002581604.1| Endonuclease III [Thermococcus sp. AM4]
gi|214032398|gb|EEB73228.1| Endonuclease III [Thermococcus sp. AM4]
Length = 239
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K + I L KY+G +P ++EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG
Sbjct: 104 KASRIILEKYNGKVPDDINELMKLPGIGRKCANIVLAYGFGK-QAIPVDTHVNRISKRLG 162
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
P R PE+ E L+ +PKE+W+ +N +V G++IC PIRP+C C + EL
Sbjct: 163 LA--PPR----VPPEKVEEYLRELIPKEKWIYVNHAMVDHGRSICKPIRPKCESCPLKEL 216
Query: 123 CPSA 126
CP A
Sbjct: 217 CPYA 220
>gi|167043370|gb|ABZ08073.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_ANIW141O9]
Length = 217
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 9/130 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I LTKY G +P+ +D+L+ +PG+G K A+ V+ + I VDTHVHRI NRLG
Sbjct: 96 EVANIILTKYHGKVPADIDKLVEIPGVGRKTANCVLVYAFEK-PAIPVDTHVHRISNRLG 154
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V T +PE+T L+ +PK+ W+PIN V +GQ IC PI P C +C +
Sbjct: 155 LVD-------TKTPEETEMELRKKVPKKYWLPINNTFVMYGQNICKPISPMCSVCKIRNS 207
Query: 123 CPSAFKDSSS 132
C + FK ++
Sbjct: 208 C-NYFKTKNA 216
>gi|365989664|ref|XP_003671662.1| hypothetical protein NDAI_0H02450 [Naumovozyma dairenensis CBS 421]
gi|343770435|emb|CCD26419.1| hypothetical protein NDAI_0H02450 [Naumovozyma dairenensis CBS 421]
Length = 467
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 5/106 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + T + D+P+++ +LL LPG+GPKMA+L + W ++GICVD HVHR+C
Sbjct: 228 IKMSAEMIRTNFQSDVPTNIPDLLSLPGVGPKMAYLTLQKAWGKMEGICVDVHVHRLCKL 287
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTI 106
WV P K +PEQTR+ LQ WLP W IN LLVG+GQ I
Sbjct: 288 FKWVD-PNSK----NPEQTRKELQSWLPPILWREINSLLVGYGQII 328
>gi|150400428|ref|YP_001324195.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus vannielii
SB]
gi|150013131|gb|ABR55583.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus vannielii
SB]
Length = 356
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 78/126 (61%), Gaps = 11/126 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++ I + KY+ IP+S+DEL+ LPG+G K A+LVM + ++ ICVDTHVHRI NR
Sbjct: 98 LKELGKILVEKYNSKIPNSIDELVKLPGVGRKTANLVMTLAFSE-DAICVDTHVHRITNR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
L +V T +P +T L+ LPK+ W IN LV FGQ IC + P+C C
Sbjct: 157 LNYVD-------TKNPNETEMALRKKLPKKYWKQINNSLVIFGQDICGFV-PKCSSCFPE 208
Query: 119 VSELCP 124
+ ++CP
Sbjct: 209 IKKICP 214
>gi|284161459|ref|YP_003400082.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus profundus
DSM 5631]
gi|284011456|gb|ADB57409.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus profundus
DSM 5631]
Length = 211
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 77/129 (59%), Gaps = 10/129 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A + + Y G +P +L+ELL LPG+G K+A++V+ I VDTHVHRI NR
Sbjct: 89 LKKLAEVLVNNYGGKVPDNLEELLKLPGVGRKVANIVL--AHLGKPAIAVDTHVHRIANR 146
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V +T PE+T + L+ +PK+ W +N VGFGQT+C P++P C C
Sbjct: 147 LGVV-------RTKRPEETEKELKKIVPKDLWSRLNKAFVGFGQTVCKPLKPLCEECPFK 199
Query: 121 ELCPSAFKD 129
C FK+
Sbjct: 200 SFC-EYFKN 207
>gi|259483988|tpe|CBF79828.1| TPA: DNA repair protein Ntg1, putative (AFU_orthologue;
AFUA_2G01120) [Aspergillus nidulans FGSC A4]
Length = 429
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 74/130 (56%), Gaps = 23/130 (17%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I +Y+ DIPS+ EL+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 287 IKKAAEIIRDQYNSDIPSTPAELMKLPGVGPKMAYLCMSAAWGKHEGIGVDVHVHRITNL 346
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN L RCG C +
Sbjct: 347 WGW-------HKTKTPEETRMSLESWLPKDKWHEINKL--------------RCGDCGLA 385
Query: 120 -SELCPSAFK 128
++LC S K
Sbjct: 386 GTKLCKSEIK 395
>gi|268575464|ref|XP_002642711.1| C. briggsae CBR-NTH-1 protein [Caenorhabditis briggsae]
Length = 272
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 24/143 (16%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A I Y GDIP +LD L LPG+GPKMA+LVM + W G C
Sbjct: 136 IQQTAKILEDSYSGDIPDTLDGLCSLPGVGPKMANLVMQIAW----GKC----------- 180
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
W+ KT++PE+T++ L+ LP+ EW PIN LLVGFGQ +C P+RP+C C
Sbjct: 181 --WI-------KTTTPEKTQKALESLLPRSEWQPINHLLVGFGQMLCQPVRPKCATCLCR 231
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
CPS+ + K K ++K
Sbjct: 232 LTCPSSTAKTGEKVEKLAKKSRK 254
>gi|296004674|ref|XP_966134.2| endonuclease III homologue, putative [Plasmodium falciparum 3D7]
gi|225631743|emb|CAG25386.2| endonuclease III homologue, putative [Plasmodium falciparum 3D7]
Length = 437
Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats.
Identities = 55/134 (41%), Positives = 79/134 (58%), Gaps = 11/134 (8%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K+I IC KY+ DIP + +EL LPGIG K+A L++ N +GI VD HVHRI
Sbjct: 302 KQILQICHILKNKYNSDIPHTYEELKKLPGIGEKIAQLILQTALNKHEGIAVDIHVHRIA 361
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
NRL WV+ + + T+ L+ ++ KE W IN +LVGFGQ IC +P C C+
Sbjct: 362 NRLNWVN-------SKNELDTQMKLKSYVQKELWSEINHVLVGFGQVICKGKKPLCEKCT 414
Query: 119 VSELCPSAFKDSSS 132
++ C ++D+S+
Sbjct: 415 LTNKC-QYYQDTST 427
>gi|410083964|ref|XP_003959559.1| hypothetical protein KAFR_0K00690 [Kazachstania africana CBS 2517]
gi|372466151|emb|CCF60424.1| hypothetical protein KAFR_0K00690 [Kazachstania africana CBS 2517]
Length = 437
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + ++++D DIP+++ ++L LPG+GPKMA+L + W ++GICVD HV R+C
Sbjct: 237 IKQTCELLVSRFDSDIPTNITDMLSLPGVGPKMAYLTLQKAWGKLEGICVDVHVDRLCKL 296
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTP 109
WV+ K +P TR+ L+ WLP+ W IN LLVGFGQ I P
Sbjct: 297 FKWVNP----DKCKTPNHTRQELEKWLPRPLWKEINSLLVGFGQMIDRP 341
>gi|313672585|ref|YP_004050696.1| DNA-(apurinic or apyrimidinic site) lyase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939341|gb|ADR18533.1| DNA-(apurinic or apyrimidinic site) lyase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 218
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 8/120 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I+ + Y G +P+SLDELL + G+G K A+LV+ G+ V +CVDTHVHRI NR+G
Sbjct: 98 ISKYLVENYQGRVPNSLDELLKIKGVGRKTANLVLVEGFG-VPAVCVDTHVHRIMNRMGL 156
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V+ T +P++T VL+ LP + W+ N LV +GQ +C PI P C C +S+ C
Sbjct: 157 VN-------TKNPDETEMVLRDKLPVKYWIKWNEYLVAYGQNVCKPISPLCSTCKLSDFC 209
>gi|219119818|ref|XP_002180661.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408134|gb|EEC48069.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 199
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 68/104 (65%), Gaps = 7/104 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I K+D DIP + ++ LPG+GPKMA++ NV WN GI VDTH+HR+ N
Sbjct: 103 IKQTVEILKEKFDNDIPPTASIMMELPGVGPKMAYICENVAWNRQTGIGVDTHMHRLFNA 162
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQ 104
L WV K+++PEQTR L+ WLP+++W +N L VGFGQ
Sbjct: 163 LNWV-------KSNTPEQTRVQLESWLPRDKWAEVNLLWVGFGQ 199
>gi|337283826|ref|YP_004623300.1| endonuclease III [Pyrococcus yayanosii CH1]
gi|334899760|gb|AEH24028.1| endonuclease III [Pyrococcus yayanosii CH1]
Length = 234
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ I L +YDG +P +L+EL+ LPGIG K A++V+ G+ I VDTHV+R+ RLG
Sbjct: 112 EVSRIILERYDGRVPDTLEELMKLPGIGRKCANIVLAYGFGK-PAIPVDTHVNRVSKRLG 170
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+SPE+ E L++ +PKEEW+ +N +V G+ +C PI+P+C C V L
Sbjct: 171 LAPL------EASPEKVEEYLKVLIPKEEWLYVNHAMVDHGKKVCRPIKPKCNECPVRNL 224
Query: 123 CPSA 126
CP
Sbjct: 225 CPKV 228
>gi|94263146|ref|ZP_01286964.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
gi|93456517|gb|EAT06631.1| Helix-hairpin-helix motif:HhH-GPD [delta proteobacterium MLMS-1]
Length = 216
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 76/124 (61%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ ++ + K+ G IP++++EL+ LPG+G K A+LV+ V + ICVDTHVHRI N
Sbjct: 98 LARLPGVLAAKFGGQIPATVEELIQLPGVGRKTANLVVAVAFEQ-PAICVDTHVHRIMNI 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V +T++PE T + L+ LP W IN LLV FGQ IC P+ C C ++
Sbjct: 157 WGYV-------RTATPEATEKALRAKLPLVHWRRINSLLVAFGQEICRPVGAHCDRCPLA 209
Query: 121 ELCP 124
+LCP
Sbjct: 210 DLCP 213
>gi|16082555|ref|NP_394252.1| endonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 217
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+IA I +Y+ +P S+DEL+ LPG+G K A +V+ G+N I VDTHV RI +R+G
Sbjct: 93 EIARIIRDRYNYRVPDSIDELVSLPGVGLKTAKVVLAEGFNR-PAIAVDTHVFRISHRIG 151
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W S +PE+T E L+ +P + V NP++V FG+ IC P+RP C C VSE
Sbjct: 152 WSS-------ARTPEETSEELERIIPVDLQVGFNPMMVEFGKAICRPVRPLCDRCPVSEY 204
Query: 123 C 123
C
Sbjct: 205 C 205
>gi|150401058|ref|YP_001324824.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus aeolicus
Nankai-3]
gi|150013761|gb|ABR56212.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus aeolicus
Nankai-3]
Length = 357
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 80/126 (63%), Gaps = 11/126 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A + Y+G IP+ ++EL+ LPG+G K A+LV+ + +++ GICVDTHVHRI NR
Sbjct: 96 LKELALMVKNNYNGKIPNDINELVKLPGVGRKTANLVITLAFDDY-GICVDTHVHRISNR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
+V+ P SPE+T L+ LPK+ W IN LV +G+ +C PI P+C C
Sbjct: 155 WNFVNTP-------SPEKTEMELRKKLPKKYWKTINNSLVVYGREVCAPI-PKCSKCIQE 206
Query: 119 VSELCP 124
+ E CP
Sbjct: 207 IKETCP 212
>gi|289548443|ref|YP_003473431.1| DNA-(apurinic or apyrimidinic site) lyase [Thermocrinis albus DSM
14484]
gi|289182060|gb|ADC89304.1| DNA-(apurinic or apyrimidinic site) lyase [Thermocrinis albus DSM
14484]
Length = 219
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 8/132 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A ++ G +P +++LL L G+G K+A+LV+ G+N ICVDTHVHRI NR
Sbjct: 95 LKRLAEELKKEFAGKVPDRIEDLLKLKGVGRKVANLVLADGFNK-PAICVDTHVHRITNR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
V KT +P QT + L LP E W N LLV FGQTIC P++P C C +
Sbjct: 154 WSLV-------KTKTPYQTEKALMEVLPIEYWQEFNRLLVAFGQTICRPVKPLCHKCPIR 206
Query: 121 ELCPSAFKDSSS 132
+ C K S S
Sbjct: 207 DYCDFFKKTSGS 218
>gi|323306155|gb|EGA59887.1| Ntg1p [Saccharomyces cerevisiae FostersB]
Length = 249
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ D+P++++ELL LPG+GPKMA+L + W ++GICVD HV R+ WV
Sbjct: 68 ILQDQFSSDVPATINELLXLPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKLWKWVD- 126
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTIC 107
QK +P+QTR LQ WLPK W IN LLVGFGQ I
Sbjct: 127 ---XQKCKTPDQTRTQLQNWLPKGLWTEINXLLVGFGQIIT 164
>gi|440292608|gb|ELP85795.1| endonuclease III, putative [Entamoeba invadens IP1]
Length = 236
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 7/117 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I + KYDG +PS+ DEL LPG+G K+A L++ + ++ I VDTHV I NR
Sbjct: 110 LKECCKIFIEKYDGKVPSTFDELCALPGVGTKIASLILAIAFDCHVAIPVDTHVFTISNR 169
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC 117
L W ++PE TR L+ WLPK++W N +LV FGQ CT P+C C
Sbjct: 170 LEWAD-------ATTPESTRIQLEEWLPKDKWSTFNKVLVSFGQCCCTKKSPKCSEC 219
>gi|10640069|emb|CAC11921.1| endonuclease III related protein [Thermoplasma acidophilum]
Length = 197
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+IA I +Y+ +P S+DEL+ LPG+G K A +V+ G+N I VDTHV RI +R+G
Sbjct: 73 EIARIIRDRYNYRVPDSIDELVSLPGVGLKTAKVVLAEGFNR-PAIAVDTHVFRISHRIG 131
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W S +PE+T E L+ +P + V NP++V FG+ IC P+RP C C VSE
Sbjct: 132 WSS-------ARTPEETSEELERIIPVDLQVGFNPMMVEFGKAICRPVRPLCDRCPVSEY 184
Query: 123 C 123
C
Sbjct: 185 C 185
>gi|67901332|ref|XP_680922.1| hypothetical protein AN7653.2 [Aspergillus nidulans FGSC A4]
gi|40742649|gb|EAA61839.1| hypothetical protein AN7653.2 [Aspergillus nidulans FGSC A4]
Length = 969
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 24/145 (16%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A I +Y+ DIPS+ EL+ LPG+GPKMA+L M+ W +GI VD HVHRI N
Sbjct: 287 IKKAAEIIRDQYNSDIPSTPAELMKLPGVGPKMAYLCMSAAWGKHEGIGVDVHVHRITNL 346
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV- 119
GW KT +PE+TR L+ WLPK++W IN L RCG C +
Sbjct: 347 WGW-------HKTKTPEETRMSLESWLPKDKWHEINKL--------------RCGDCGLA 385
Query: 120 -SELCPSAFKDSSSPSSKSRKSAQK 143
++LC S K +P + R +K
Sbjct: 386 GTKLCKSEIK-GMAPKNNGRGLPKK 409
>gi|366994462|ref|XP_003676995.1| hypothetical protein NCAS_0F01560 [Naumovozyma castellii CBS 4309]
gi|342302863|emb|CCC70640.1| hypothetical protein NCAS_0F01560 [Naumovozyma castellii CBS 4309]
Length = 446
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 5/106 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + + + D+P+ + LL LPG+GPKMA+L + W + GICVD HVHR C
Sbjct: 230 IKQTAQMLVDNFQSDVPTDIPGLLSLPGVGPKMAYLTLQKAWGRMAGICVDVHVHRFCRL 289
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTI 106
WV+ K+ +PE+TR+ L+ WLP W IN LLVG+GQ I
Sbjct: 290 FKWVN-----PKSKNPEETRKELESWLPHPLWREINSLLVGYGQII 330
>gi|50289277|ref|XP_447069.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526378|emb|CAG60002.1| unnamed protein product [Candida glabrata]
Length = 468
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 64/106 (60%), Gaps = 4/106 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I KYD D+P ++ ++L LPG+GPKM +L + W ++GICVD HV R+C
Sbjct: 239 IKRTAAILNEKYDQDVPDNVTDILGLPGVGPKMGYLTLQKAWGKIEGICVDVHVDRLCKM 298
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTI 106
WV K +P TR+ LQ WLP W IN LLVGFGQ I
Sbjct: 299 WKWVDP----DKCKTPNDTRKQLQKWLPPRLWTEINGLLVGFGQVI 340
>gi|157364361|ref|YP_001471128.1| endonuclease III [Thermotoga lettingae TMO]
gi|157314965|gb|ABV34064.1| endonuclease III [Thermotoga lettingae TMO]
Length = 217
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K++ I + K++G IP++L +LL LPG+G K A++V+ + + VDTHVHRI NRLG
Sbjct: 91 KVSQIIVEKFNGKIPANLHDLLSLPGVGRKTANIVLYHCFCQ-PALAVDTHVHRISNRLG 149
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V KT +PEQT E L+ +P++ W PIN +V FG+ +C P +P+C C V++
Sbjct: 150 FV-------KTKTPEQTEEGLKKIIPEKFWGPINGAMVEFGKKVCLPRKPKCQECPVNKY 202
Query: 123 C 123
C
Sbjct: 203 C 203
>gi|429965677|gb|ELA47674.1| hypothetical protein VCUG_00875 [Vavraia culicis 'floridensis']
Length = 224
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
Query: 13 DGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQK 72
D + + D L+ LPG+G K+A L + + N GI VDTHVHRI NRLG V+
Sbjct: 113 DKKMATEYDALIKLPGVGNKIAFLYLQIACNKTVGIGVDTHVHRIFNRLGIVT------- 165
Query: 73 TSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
T +PE+TR L+ + EW IN ++VGFGQT+C P +P+C C V+ C K S
Sbjct: 166 TRTPEETRIKLEQIYDRREWKEINKVMVGFGQTVCLPKKPKCKECVVNYCCKYGRKFS 223
>gi|365767221|gb|EHN08706.1| Ntg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 399
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ D+P++++ELL LPG+GPKMA+L + W ++GICVD HV R+ WV
Sbjct: 218 ILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKLWKWVD- 276
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTIC 107
QK +P+QTR LQ WLPK W IN LLVGFGQ I
Sbjct: 277 ---AQKCKTPDQTRTQLQNWLPKGLWTEINGLLVGFGQIIT 314
>gi|297619394|ref|YP_003707499.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus voltae A3]
gi|297378371|gb|ADI36526.1| DNA-(apurinic or apyrimidinic site) lyase [Methanococcus voltae A3]
Length = 366
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 11/145 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ Y+ +P++++EL+ L G+G K A+LV+++ ++N ICVDTHVHRICNR
Sbjct: 102 LKKLGTQLKEDYNNKVPNTVEELVKLAGVGRKTANLVVSLAFDNY-AICVDTHVHRICNR 160
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
+VS T PE+T + L+ LPK+ W IN LV +GQ +C+P P+C +C
Sbjct: 161 WNYVS-------TDFPEETEQELRKKLPKKYWKSINNSLVVYGQDVCSPT-PKCNLCYEE 212
Query: 119 VSELCPSAFKDSSSPSSKSRKSAQK 143
+ +CP K ++ S ++ S +K
Sbjct: 213 IKSICPHYSKLNTLKDSLNQLSFKK 237
>gi|448727672|ref|ZP_21710021.1| endonuclease III [Halococcus morrhuae DSM 1307]
gi|445789658|gb|EMA40337.1| endonuclease III [Halococcus morrhuae DSM 1307]
Length = 228
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A + + ++DG++P ++ EL LPG+G K A++V+ G++ V+GI VDTHV R+ R
Sbjct: 95 IRESAQLVVEEHDGEVPDTMGELTELPGVGRKTANVVLQHGYDVVEGIVVDTHVQRLTRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE+ E L ++P E W L + G+ CT P CG C +
Sbjct: 155 LGLTEE-------QRPERIEEDLMEFVPTEHWQAFTHLFIDHGRATCTARNPECGDCVLE 207
Query: 121 ELCPSAFKDSSS 132
++CPS+ DSS+
Sbjct: 208 DICPSSKVDSST 219
>gi|6319304|ref|NP_009387.1| bifunctional N-glycosylase/AP lyase NTG1 [Saccharomyces cerevisiae
S288c]
gi|401436|sp|P31378.1|NTG1_YEAST RecName: Full=Mitochondrial DNA base excision repair N-glycosylase
1; Flags: Precursor
gi|171860|gb|AAC04942.1| Ntg1p: endonuclease III-like glycosylase 1 [Saccharomyces
cerevisiae]
gi|207347995|gb|EDZ73989.1| YAL015Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272284|gb|EEU07269.1| Ntg1p [Saccharomyces cerevisiae JAY291]
gi|259144698|emb|CAY77639.1| Ntg1p [Saccharomyces cerevisiae EC1118]
gi|285810187|tpg|DAA06973.1| TPA: bifunctional N-glycosylase/AP lyase NTG1 [Saccharomyces
cerevisiae S288c]
gi|323334796|gb|EGA76168.1| Ntg1p [Saccharomyces cerevisiae AWRI796]
gi|323338890|gb|EGA80104.1| Ntg1p [Saccharomyces cerevisiae Vin13]
gi|392301261|gb|EIW12349.1| Ntg1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 399
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ D+P++++ELL LPG+GPKMA+L + W ++GICVD HV R+ WV
Sbjct: 218 ILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKLWKWVD- 276
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTIC 107
QK +P+QTR LQ WLPK W IN LLVGFGQ I
Sbjct: 277 ---AQKCKTPDQTRTQLQNWLPKGLWTEINGLLVGFGQIIT 314
>gi|14520880|ref|NP_126355.1| endonuclease III [Pyrococcus abyssi GE5]
gi|5458097|emb|CAB49586.1| nth endonuclease III [Pyrococcus abyssi GE5]
gi|380741424|tpe|CCE70058.1| TPA: endonuclease III [Pyrococcus abyssi GE5]
Length = 222
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 7/118 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I L KY G +P +EL+ LPGIG K A++V+ G+ + I VDTHV+RI RLG
Sbjct: 102 IILEKYKGRVPDKFEELIKLPGIGRKCANIVLAYGFG-IPAIPVDTHVYRISRRLGLAPW 160
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+SPE+ E L+ +P+EEW+ +N +V G+++C PI+PRC C + ELCP
Sbjct: 161 ------DASPEEVEERLKELIPREEWIYVNHAMVDHGKSVCRPIKPRCDECPLKELCP 212
>gi|340345847|ref|ZP_08668979.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520988|gb|EGP94711.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 217
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+++ I +KY G +P +LDEL+ LPG+G K A+ V+ ++ I VD HVHRI NRLG
Sbjct: 97 EVSKIIDSKYSGIVPDTLDELIQLPGVGRKTANCVLVYAFDK-PAIPVDIHVHRISNRLG 155
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V+ T SPE+T VL +PK+ W+ IN V +GQ IC PI P C +C + +
Sbjct: 156 LVN-------TKSPEETELVLMKKIPKKYWIKINDTFVMYGQNICKPINPMCNVCKIKKN 208
Query: 123 CPSAFKDS 130
C +++
Sbjct: 209 CKYYIENN 216
>gi|406893678|gb|EKD38677.1| hypothetical protein ACD_75C00647G0002 [uncultured bacterium]
Length = 500
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 8/121 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
+ P L + G +P +++EL+ LPG+G K A+LV V + ICVDTHVHRI N +
Sbjct: 96 LLPEALRSFGGKVPETIEELITLPGVGRKTANLVRTVAFRK-PAICVDTHVHRIMNIWEY 154
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V +T +P +T L+ LP+E W+ +N LLV FGQ+IC P+ P+C +C + C
Sbjct: 155 V-------RTDTPLKTEMALRAKLPEEHWLSVNSLLVAFGQSICRPVGPKCDICPLLPEC 207
Query: 124 P 124
P
Sbjct: 208 P 208
>gi|45185964|ref|NP_983680.1| ACR278Wp [Ashbya gossypii ATCC 10895]
gi|44981754|gb|AAS51504.1| ACR278Wp [Ashbya gossypii ATCC 10895]
Length = 367
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ P+ ++ GD+P++++ LPG+G K+ L + W V GI VD HV R+
Sbjct: 198 IKRAMPMLQEEFGGDVPTTIEGFNSLPGVGNKIGFLALQKSWGIVAGIGVDVHVDRLSKM 257
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +K +PE TR+ L+ W+P+E W INPLLVGFGQ IC RC +C +
Sbjct: 258 WRWVDA----KKCKTPEHTRKALEEWVPRELWNEINPLLVGFGQVICPSRGKRCDLCLAN 313
Query: 121 ELC 123
++C
Sbjct: 314 DIC 316
>gi|374106887|gb|AEY95796.1| FACR278Wp [Ashbya gossypii FDAG1]
Length = 367
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ P+ ++ GD+P++++ LPG+G K+ L + W V GI VD HV R+
Sbjct: 198 IKRAMPMLQEEFGGDVPTTIEGFNSLPGVGNKIGFLALQKSWGIVAGIGVDVHVDRLSKM 257
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV +K +PE TR+ L+ W+P+E W INPLLVGFGQ IC RC +C +
Sbjct: 258 WRWVDA----KKCKTPEHTRKALEEWVPRELWNEINPLLVGFGQVICPSRGKRCDLCLAN 313
Query: 121 ELC 123
++C
Sbjct: 314 DIC 316
>gi|323356328|gb|EGA88130.1| Ntg1p [Saccharomyces cerevisiae VL3]
Length = 249
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ D+P++++ELL LPG+GPKMA+L + W ++GICVD HV R+ WV
Sbjct: 68 ILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKLWKWVD- 126
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTIC 107
QK +P+QTR LQ WLPK W IN LLVGFGQ I
Sbjct: 127 ---AQKCKTPDQTRTQLQNWLPKGLWTEINGLLVGFGQIIT 164
>gi|407042592|gb|EKE41422.1| endonuclease III, putative [Entamoeba nuttalli P19]
Length = 241
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y+ +P + +LL LPG+GPK+A L++++G++ ++ + +DTHV I R
Sbjct: 119 LKRCCVIMKEQYNNQVPQTKQQLLALPGVGPKIASLILSIGFDRLESLAIDTHVFVISQR 178
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW S+PE+ R L+ WLPKEEW N LV FGQ C P+C C +
Sbjct: 179 LGWAD-------GSTPEKVRLQLESWLPKEEWSLFNKSLVAFGQCCCRKTHPKCKQCPIQ 231
Query: 121 ELC 123
+ C
Sbjct: 232 DKC 234
>gi|304314918|ref|YP_003850065.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
gi|302588377|gb|ADL58752.1| endonuclease III [Methanothermobacter marburgensis str. Marburg]
Length = 215
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++++ I L +Y G +P +DELL LPG+G K A+ V+ +N + VDTHVHRI NR
Sbjct: 88 IREVSRILLEEYGGRVPDDIDELLKLPGVGRKTANCVLVYAFNK-PVVPVDTHVHRISNR 146
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V+ T +PE+T VL +P++ W+ +N L+V FGQ IC P+ PR C ++
Sbjct: 147 IGLVN-------TRTPEETERVLMEVIPRKYWIELNDLMVQFGQDICRPVGPRHEECPIA 199
Query: 121 ELC 123
+ C
Sbjct: 200 DEC 202
>gi|167391460|ref|XP_001739785.1| endonuclease III [Entamoeba dispar SAW760]
gi|165896410|gb|EDR23825.1| endonuclease III, putative [Entamoeba dispar SAW760]
Length = 147
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 76/130 (58%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +++ +P + +LL LPG+GPK+A L++++G++ ++ + +DTH+ I +R
Sbjct: 25 LKRCCVIMKEQFNNQVPQTKQDLLSLPGVGPKIASLILSIGFDRLESLAIDTHIFVISHR 84
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW SSPE+ R L+ WLPKEEW N +V FGQ C I P+C C +
Sbjct: 85 LGWAD-------GSSPEKVRLQLESWLPKEEWSLFNKSIVAFGQCCCRKIHPKCKQCPIQ 137
Query: 121 ELCPSAFKDS 130
+ C K +
Sbjct: 138 DKCHYYHKST 147
>gi|345311962|ref|XP_001517653.2| PREDICTED: endonuclease III-like protein 1-like [Ornithorhynchus
anatinus]
Length = 290
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y GDIP+++ LL LPG+GPKMAHL M + W V GI VDTHVHRI NR
Sbjct: 207 IKQTTAILKDRYRGDIPATVAGLLQLPGVGPKMAHLAMAIAWGAVSGIAVDTHVHRIANR 266
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPK 89
L W + +T SPEQTR L+ WLP+
Sbjct: 267 LQWT-----QTETKSPEQTRAALEDWLPR 290
>gi|390961830|ref|YP_006425664.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
gi|390520138|gb|AFL95870.1| hypothetical protein CL1_1673 [Thermococcus sp. CL1]
Length = 238
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 76/124 (61%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K + I L +Y G +P + EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG
Sbjct: 112 KASRIILEEYGGKVPDDIHELMKLPGIGRKCANIVLAYGFGK-QAIPVDTHVNRISKRLG 170
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
P R PE+ E L+ +P+E+W+ +N +V G+ IC PIRP+CG C + EL
Sbjct: 171 LA--PPR----VPPEKVEEYLRELIPREKWIYVNHAMVDHGKNICNPIRPKCGECPLKEL 224
Query: 123 CPSA 126
CP A
Sbjct: 225 CPYA 228
>gi|151941378|gb|EDN59749.1| DNA glycosylase [Saccharomyces cerevisiae YJM789]
gi|349576238|dbj|GAA21410.1| K7_Ntg1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 399
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ D+P++++ELL LPG+GPKMA+L + W ++GICVD HV R+ WV
Sbjct: 218 ILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKLWKWVD- 276
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTIC 107
QK +P+QTR LQ WLPK W IN LLVGFGQ I
Sbjct: 277 ---PQKCKTPDQTRTQLQNWLPKGLWTEINGLLVGFGQIIT 314
>gi|358059574|dbj|GAA94731.1| hypothetical protein E5Q_01385 [Mixia osmundae IAM 14324]
Length = 784
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 10/146 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHL-VMNVGWNNVQGICVDTHVHRICN 59
+++ + + +D D+P ++ EL LPG+GPKM L + + G N GI VDTHVHRI +
Sbjct: 577 IRRTSEMLRDLHDSDVPKTIQELCDLPGVGPKMGFLSLQSQGING--GIGVDTHVHRITH 634
Query: 60 RLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
RL W +++ E+TR L+ WLP E IN LVGFGQ +C P+ PRC +C +
Sbjct: 635 RLRW-----HRKEPKDAEETRLNLESWLPSELHGVINKTLVGFGQAVCLPVGPRCDLCDL 689
Query: 120 --SELCPSAFKDSSSPSSKSRKSAQK 143
+ LCPS K + S S+ A++
Sbjct: 690 GKASLCPSRVKVDTLKRSPSKYLAKQ 715
>gi|167375600|ref|XP_001733691.1| endonuclease III [Entamoeba dispar SAW760]
gi|165905090|gb|EDR30183.1| endonuclease III, putative [Entamoeba dispar SAW760]
Length = 241
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 76/130 (58%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +++ +P + +LL LPG+GPK+A L++++G++ ++ + +DTH+ I +R
Sbjct: 119 LKRCCVIMKEQFNNQVPQTKQDLLSLPGVGPKIASLILSIGFDRLESLAIDTHIFVISHR 178
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW S+PE+ R L+ WLPKEEW N +V FGQ C I P+C C +
Sbjct: 179 LGWAD-------GSTPEKVRLQLESWLPKEEWSLFNKSIVAFGQCCCRKIHPKCKQCPIQ 231
Query: 121 ELCPSAFKDS 130
+ C K +
Sbjct: 232 DKCHYYHKST 241
>gi|325958693|ref|YP_004290159.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
gi|325330125|gb|ADZ09187.1| DNA-(apurinic or apyrimidinic site) lyase [Methanobacterium sp.
AL-21]
Length = 216
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 9/136 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++++ I Y+ +P + ELL LPG+G K A+ V+ G++ I VD HVHRI NR
Sbjct: 90 VREVSRIIHEDYNDTVPEDMAELLSLPGVGRKTANCVLVYGFHK-DAIPVDVHVHRISNR 148
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V+ T +P++T E L +PK+ W+P+N L V FGQTIC PI P+ +C ++
Sbjct: 149 IGLVN-------TGTPDETEEKLMKIVPKKFWLPLNDLFVQFGQTICKPIGPKHEICPIA 201
Query: 121 ELCPSAFKDSSSPSSK 136
E C +K+ + + K
Sbjct: 202 EYC-DYYKNMKTTNEK 216
>gi|257051671|ref|YP_003129504.1| endonuclease III [Halorhabdus utahensis DSM 12940]
gi|256690434|gb|ACV10771.1| endonuclease III [Halorhabdus utahensis DSM 12940]
Length = 228
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I I + ++DG++P ++D L LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 LKGIGEILVEEHDGEVPDTMDALTALPGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + P+ + L +P++EW L++ G+ +CT P CG C++
Sbjct: 155 LGLTEE-------ERPDAIEDDLMEIIPEDEWQAFTHLMISHGRAVCTARNPDCGDCALE 207
Query: 121 ELCPSAFKDSS 131
++CPS+ DS
Sbjct: 208 DVCPSSKLDSD 218
>gi|336324330|ref|YP_004604297.1| DNA-(apurinic or apyrimidinic site) lyase [Flexistipes sinusarabici
DSM 4947]
gi|336107911|gb|AEI15729.1| DNA-(apurinic or apyrimidinic site) lyase [Flexistipes sinusarabici
DSM 4947]
Length = 227
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I + ++DG +P+ LD+LL L G+G K A+LV+ G+ + +CVDTHVHRICNR
Sbjct: 96 IKDICKDIVERFDGKVPADLDKLLSLKGVGRKTANLVLVEGFE-MDAVCVDTHVHRICNR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V KT +P++T L+ LP + W N +LV +GQ +C P P C C +
Sbjct: 155 AGFV-------KTKTPDETEMRLREILPVKYWKKWNEMLVSYGQKVCKPRGPTCSSCKLF 207
Query: 121 ELC 123
LC
Sbjct: 208 HLC 210
>gi|409095774|ref|ZP_11215798.1| endonuclease III [Thermococcus zilligii AN1]
Length = 242
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 80/124 (64%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+ + I L KY+G +P ++EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG
Sbjct: 104 RASQILLEKYNGKVPEDINELMKLPGIGRKCANIVLAYGFGK-QAIPVDTHVNRISKRLG 162
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
++ PG +PE+ E L +P+++W+ +N +V G++IC PI+P+C C + EL
Sbjct: 163 -LAPPG-----VAPEKVEEYLAGLIPEDKWIYVNHAMVDHGRSICRPIKPKCDECPLREL 216
Query: 123 CPSA 126
CP A
Sbjct: 217 CPYA 220
>gi|212224145|ref|YP_002307381.1| endonuclease III [Thermococcus onnurineus NA1]
gi|212009102|gb|ACJ16484.1| endonuclease III [Thermococcus onnurineus NA1]
Length = 243
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K + I L +Y G +P + EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG
Sbjct: 112 KASQIILKEYGGKVPDDIHELMKLPGIGRKCANIVLAYGFGR-QAIPVDTHVNRISKRLG 170
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
P R Q PE+ + L+ +P+E+W+ +N +V G+TIC PI+PRC C + EL
Sbjct: 171 LA--PPRVQ----PERVEDYLRELIPREKWIYVNHAMVDHGKTICRPIKPRCDECPLREL 224
Query: 123 CPSA 126
CP +
Sbjct: 225 CPYS 228
>gi|365762207|gb|EHN03808.1| Ntg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 390
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 65/101 (64%), Gaps = 4/101 (3%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ GD+P++++ELL LPG+GPKMA+L + W ++GICVD HV R+ WV
Sbjct: 209 ILQDRHLGDVPATINELLALPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKIWKWVD- 267
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTIC 107
QK +P+QTR LQ WLP+ W IN LLVGFGQ I
Sbjct: 268 ---PQKCKNPDQTRIQLQNWLPRGLWTEINGLLVGFGQIIT 305
>gi|406894390|gb|EKD39215.1| hypothetical protein ACD_75C00473G0002 [uncultured bacterium]
Length = 484
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 8/119 (6%)
Query: 6 PICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVS 65
P L + G +P +++EL+ LPG+G K A+LV++V + ICVDTHVHRI N +V
Sbjct: 98 PEALRSFHGMVPDTIEELVTLPGVGRKTANLVVSVAFQK-PAICVDTHVHRIMNIWEYV- 155
Query: 66 QPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+T +P +T L+ LP + W+ +N LLV FGQ+IC P+ P C +C + CP
Sbjct: 156 ------ETDTPLKTEMALRAKLPDKHWIGVNSLLVAFGQSICRPVSPHCDICPLLTACP 208
>gi|240103334|ref|YP_002959643.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
gi|239910888|gb|ACS33779.1| Endonuclease III (nth) [Thermococcus gammatolerans EJ3]
Length = 230
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 75/124 (60%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K + I L KY G +P + EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG
Sbjct: 104 KASRIILEKYGGKVPDDIKELMKLPGIGRKCANIVLAYGFGR-QAIPVDTHVNRISKRLG 162
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
P R PE+ E L +PKE+W+ +N +V G++IC PIRP+C C + EL
Sbjct: 163 LA--PPR----VPPEKVEEYLMELIPKEKWIYVNHAMVDHGRSICRPIRPKCESCPLKEL 216
Query: 123 CPSA 126
CP A
Sbjct: 217 CPYA 220
>gi|14591284|ref|NP_143362.1| endonuclease III [Pyrococcus horikoshii OT3]
gi|3257923|dbj|BAA30606.1| 222aa long hypothetical endonuclease III [Pyrococcus horikoshii
OT3]
Length = 222
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 8/127 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I L KY+G +P +EL+ LPGIG K A++V+ G+ + I VDTHV+RI RLG
Sbjct: 102 IILKKYNGRVPDKFEELIKLPGIGRKCANIVLAYGFG-IPAIPVDTHVYRISRRLGLAPW 160
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS- 125
+SPE+ E L+ +P+EEW+ +N +V G+++C PI+PRC C + LCP
Sbjct: 161 ------DASPEEVEERLKSLIPREEWIYVNHAMVDHGKSVCKPIKPRCWECPLRGLCPKI 214
Query: 126 AFKDSSS 132
+D+SS
Sbjct: 215 GVQDTSS 221
>gi|401626951|gb|EJS44864.1| ntg1p [Saccharomyces arboricola H-6]
Length = 401
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 62/93 (66%), Gaps = 4/93 (4%)
Query: 15 DIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTS 74
D+P++++ELL LPG+GPKMA+L + W ++GICVD HV R+ WV QK
Sbjct: 226 DVPATINELLALPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKAWKWVD----PQKCR 281
Query: 75 SPEQTREVLQLWLPKEEWVPINPLLVGFGQTIC 107
+P+QTR +LQ WLP+ W IN LLVGFGQ I
Sbjct: 282 TPDQTRILLQDWLPRGLWTEINGLLVGFGQIIT 314
>gi|167044454|gb|ABZ09130.1| putative HhH-GPD superfamily base excision DNA repair protein
[uncultured marine crenarchaeote HF4000_APKG6D9]
Length = 216
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I TKY G +P +LD L+ LPG+G K A+ V+ + I VD HVHRI NRLG
Sbjct: 95 EVAKIINTKYKGKVPDNLDTLVELPGVGRKTANCVLVYAFEK-PAIPVDIHVHRISNRLG 153
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V T +PE+T + L +PK+ W+ IN V +GQ IC PI P C +C + +
Sbjct: 154 LVD-------TKNPEETEQELMKKIPKKYWIDINDTFVMYGQNICKPISPMCDVCKIKKN 206
Query: 123 C 123
C
Sbjct: 207 C 207
>gi|73668473|ref|YP_304488.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
gi|72395635|gb|AAZ69908.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
Length = 204
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+I+ + L KY G +P ++ LL LPG+G K A+ V+ + + VDTHVHRI NR
Sbjct: 85 IKEISRLLLEKYGGRVPDDMEALLELPGVGRKTANCVLAHAFLK-DALAVDTHVHRISNR 143
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V +T PE+T L+ P++ W +N LLV GQ C PI PRC C++
Sbjct: 144 LGLV-------ETKVPEETETELKKIFPQKYWRHVNLLLVKLGQNTCRPISPRCKTCTLD 196
Query: 121 ELCP 124
++CP
Sbjct: 197 DICP 200
>gi|67479287|ref|XP_655025.1| endonuclease III [Entamoeba histolytica HM-1:IMSS]
gi|56472130|gb|EAL49639.1| endonuclease III, putative [Entamoeba histolytica HM-1:IMSS]
gi|449707262|gb|EMD46954.1| endonuclease III, putative [Entamoeba histolytica KU27]
Length = 241
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I +Y+ +P + +LL LPG+GPK+A L++++G++ ++ + +DTHV I R
Sbjct: 119 LKHCCVIMKEQYNNQVPQTKQQLLTLPGVGPKIASLILSIGFDRLESLAIDTHVFVISQR 178
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW S+PE+ R L+ WLPKEEW N LV FGQ C P+C C +
Sbjct: 179 LGWAD-------GSTPEKVRLQLESWLPKEEWPLFNKSLVAFGQCCCRKTHPKCKQCPIQ 231
Query: 121 ELC 123
+ C
Sbjct: 232 DKC 234
>gi|389852800|ref|YP_006355034.1| endonuclease III [Pyrococcus sp. ST04]
gi|388250106|gb|AFK22959.1| endonuclease III [Pyrococcus sp. ST04]
Length = 216
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 77/118 (65%), Gaps = 7/118 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I L KY G +P++L+EL+ LPGIG K A++V+ G+ + I VDTHV+R+ RLG V
Sbjct: 101 IILEKYGGVVPNTLEELMKLPGIGRKCANIVLAYGFG-IPAIPVDTHVNRVSKRLGLVPP 159
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
++PE+ E+L+ LPK+EW+ +N +V G+ +C PI+P+C C + ++CP
Sbjct: 160 ------NATPEKVEEILKKLLPKDEWLYVNHAMVDHGKAVCRPIKPKCDECPLRDICP 211
>gi|57641076|ref|YP_183554.1| endonuclease III [Thermococcus kodakarensis KOD1]
gi|57159400|dbj|BAD85330.1| endonuclease III [Thermococcus kodakarensis KOD1]
Length = 246
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K + I L +Y G +P + EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG
Sbjct: 111 KASKIILERYGGKVPDDIHELMKLPGIGRKCANIVLAYGFGK-QAIPVDTHVNRISKRLG 169
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
P R +PE+ E L +PKE+W+ +N +V G++IC PI P+C C + E
Sbjct: 170 LA--PPR----VAPEKVEEYLTALIPKEKWIYVNHAMVDHGRSICRPINPKCEECPLREF 223
Query: 123 CPSA 126
CP A
Sbjct: 224 CPYA 227
>gi|302336472|ref|YP_003801679.1| DNA-(apurinic or apyrimidinic site) lyase [Olsenella uli DSM 7084]
gi|301320312|gb|ADK68799.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Olsenella uli DSM 7084]
Length = 231
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + Y G++P S++EL LPG+G K A++V+N +++V+GI VDTHV+RI RL S
Sbjct: 102 MIVADYGGEVPGSMEELTRLPGVGRKTANIVLNKAFHSVEGIAVDTHVYRIATRLRLTSA 161
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
P +P Q L +P+E W P+N + FG+ CT +C C +++CPSA
Sbjct: 162 P-------TPLQAERDLLETIPRELWGPVNEQWIHFGRETCTAQHAKCEACVAADICPSA 214
Query: 127 FKDSSSPSSKSRKSAQK 143
F+ + K+ ++ ++
Sbjct: 215 FQPNRWFKGKTARARRR 231
>gi|335437705|ref|ZP_08560474.1| endonuclease III [Halorhabdus tiamatea SARL4B]
gi|334894983|gb|EGM33167.1| endonuclease III [Halorhabdus tiamatea SARL4B]
Length = 228
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I + + ++DGD+P ++DEL LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 LKGIGELLVDEHDGDVPDTMDELTDLPGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG +++ R PE + L +P+ EW L++ G+ +CT P C C +
Sbjct: 155 LG-ITEAQR------PEAIEKDLMEIIPEAEWQDFTHLMISHGRAVCTARNPDCADCELD 207
Query: 121 ELCPSAFKDSS 131
++CPS+ DS
Sbjct: 208 DVCPSSRLDSD 218
>gi|402471501|gb|EJW05218.1| hypothetical protein EDEG_00683 [Edhazardia aedis USNM 41457]
Length = 121
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 8/116 (6%)
Query: 12 YDG-DIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
Y G +P+ +DELL + G+G KMA L MN +N GI VDTHVHR+ RLG+ S
Sbjct: 8 YKGLSMPTKIDELLKIKGVGKKMAFLYMNYCFNQSFGIAVDTHVHRLSQRLGFTS----- 62
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ + E R+ L+ +W +N +LVGFGQ ICT I P+C +C+ +CPS+
Sbjct: 63 --SKNVEICRKDLEKLFHISQWNDVNFVLVGFGQVICTAINPKCAICNARFICPSS 116
>gi|392377719|ref|YP_004984878.1| DNA-(Apurinic or apyrimidinic site) lyase [Azospirillum brasilense
Sp245]
gi|356879200|emb|CCD00104.1| DNA-(Apurinic or apyrimidinic site) lyase [Azospirillum brasilense
Sp245]
Length = 230
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 8/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+T++DG++P + D L+ G+GPK+A L + VG+ + + VD HVHRI NR G+V+ P
Sbjct: 115 ITEHDGEVPDTPDALMAFHGVGPKIAALTLAVGFG-IPAVAVDVHVHRIVNRWGFVAAP- 172
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+PE+T L LP+ WV IN LV FG+ ICT RPRC C++ +C
Sbjct: 173 ------TPERTMVALMELLPRHYWVEINERLVPFGKWICTGDRPRCSTCAMLSMC 221
>gi|256827275|ref|YP_003151234.1| endonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583418|gb|ACU94552.1| endonuclease III [Cryptobacterium curtum DSM 15641]
Length = 222
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
++ + +T + G++P+ +D L LPG+G K A++VM + N QGI VDTHV RI ++L +
Sbjct: 100 LSQVLMTDFGGEVPNDIDALQTLPGVGRKTANVVMCEAFKNPQGIAVDTHVFRIAHKLKF 159
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P +T L P+++W+ IN V FG+ C RPRC C +++LC
Sbjct: 160 AGPSA-----DTPAKTEAALLKTYPQKDWLYINHQWVHFGREFCIARRPRCADCFIADLC 214
Query: 124 PSAFKD 129
PSA KD
Sbjct: 215 PSASKD 220
>gi|327401491|ref|YP_004342330.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus veneficus
SNP6]
gi|327316999|gb|AEA47615.1| DNA-(apurinic or apyrimidinic site) lyase [Archaeoglobus veneficus
SNP6]
Length = 211
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 8/111 (7%)
Query: 14 GDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKT 73
G +P + DEL+ LPG+G K A++V+ + I VDTHVHR+ NR+G V +T
Sbjct: 102 GSVPDTYDELVKLPGVGRKTANVVLASAFGKA-AIGVDTHVHRVSNRMGLV-------RT 153
Query: 74 SSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
PE+T L+ +P+E W +N +VGFGQT+C P++P C C ++ CP
Sbjct: 154 KKPEETENELKKIIPRELWTRVNRAMVGFGQTVCRPLKPLCDECPFTDWCP 204
>gi|221195209|ref|ZP_03568265.1| endonuclease III [Atopobium rimae ATCC 49626]
gi|221185112|gb|EEE17503.1| endonuclease III [Atopobium rimae ATCC 49626]
Length = 231
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I + Y G++P +++EL+ LPG+G K A++V+N +N V GI VDTHV+RI +RL
Sbjct: 98 EMAQILMADYGGEVPQTMEELVKLPGVGRKTANIVLNKMFNTVDGIAVDTHVYRIASRL- 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
R ++P + L LP E W +N + FG+ ICT P C C +S++
Sbjct: 157 ------RLTSAATPLAAEQDLLSLLPHELWKDVNEEWIHFGRDICTARNPTCSACPLSDI 210
Query: 123 CPSA------FKDSSSPSSK 136
CPS FK S SSK
Sbjct: 211 CPSCGQPNRWFKGSGKKSSK 230
>gi|408403428|ref|YP_006861411.1| endonuclease III [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364024|gb|AFU57754.1| putative endonuclease III [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 223
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+++ + ++K+ G +PS +D LL LPG+G K A+ V+ ++ I VD HVHRI NR
Sbjct: 94 IKQVSQMLISKFGGRVPSDIDSLLKLPGVGRKTANCVLVYAFDK-PAIPVDVHVHRISNR 152
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG VS T +PEQT + L + ++ W +N V +GQ IC P+RP C C +
Sbjct: 153 LGLVS-------TKTPEQTEQDLSKLVDRKLWTKVNDTFVMYGQNICLPVRPNCKACDLK 205
Query: 121 ELC 123
++C
Sbjct: 206 KMC 208
>gi|393796716|ref|ZP_10380080.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 175
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I +KY G +P +L++L+ LPG+G K A+ V+ ++ I VD HVHRI NRLG
Sbjct: 54 EVAKIINSKYKGKVPDNLEKLVELPGVGRKTANCVLVYAFDK-PAIPVDIHVHRISNRLG 112
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V+ T +PE+T + L +PK+ W+ IN V +GQ IC PI P C +C +
Sbjct: 113 LVN-------TKTPEETEQELMRIIPKKFWIDINDTFVMYGQNICKPISPMCNVCKIKNN 165
Query: 123 C 123
C
Sbjct: 166 C 166
>gi|217967076|ref|YP_002352582.1| endonuclease III [Dictyoglomus turgidum DSM 6724]
gi|217336175|gb|ACK41968.1| endonuclease III [Dictyoglomus turgidum DSM 6724]
Length = 210
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 79/125 (63%), Gaps = 7/125 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A I + KY+G +P +++ELL LPG+ K A++V++ G+ +GI +DTHV+R+ RL
Sbjct: 93 AQIIVEKYNGKVPDTMEELLKLPGVARKTANVVLSAGYGKNEGIVIDTHVNRLSKRLNL- 151
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
G+++ EQ E++++ +PK+EW + LL+ G+ +C P+C C + ++CP
Sbjct: 152 ---GKEKNRDKLEQ--ELMKI-VPKDEWANFSYLLIHHGRNVCKAKNPKCDECILKDICP 205
Query: 125 SAFKD 129
SAF +
Sbjct: 206 SAFNE 210
>gi|341583175|ref|YP_004763667.1| endonuclease III [Thermococcus sp. 4557]
gi|340810833|gb|AEK73990.1| endonuclease III [Thermococcus sp. 4557]
Length = 238
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 74/124 (59%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K + I L KY G +P + EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG
Sbjct: 112 KASQIILEKYGGKVPDDIKELMKLPGIGRKCANIVLAYGFGR-QAIPVDTHVNRISKRLG 170
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
P R Q PE+ E L +P E+W+ +N +V G++IC PI P+C C + EL
Sbjct: 171 LA--PPRVQ----PEKVEEYLAELIPYEKWIYVNHAMVDHGKSICRPIGPKCDECPLREL 224
Query: 123 CPSA 126
CP A
Sbjct: 225 CPYA 228
>gi|42557689|emb|CAF28664.1| putative endonuclease III [uncultured crenarchaeote]
Length = 219
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++ + + K+D +PS+L+ELL LPG+G K A+ V+ +N I VD HVHRI NR
Sbjct: 98 IKQVVQLLIEKFDSKVPSNLEELLTLPGVGRKTANCVLVYAFNQ-PAIPVDVHVHRISNR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V+ T E+T L + KE W+ +N V +GQ +C PI+P+C +C +
Sbjct: 157 LGIVN-------TRKVEETELELCNIIDKEMWIEVNDTFVTYGQNVCLPIKPKCNICQLK 209
Query: 121 ELC 123
++C
Sbjct: 210 KMC 212
>gi|393796715|ref|ZP_10380079.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 175
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I +KY G +P +L++L+ LPG+G K A+ V+ ++ I VD HVHRI NRLG
Sbjct: 54 EVAKIINSKYKGKVPDNLEKLVELPGVGRKTANCVLVYAFDK-PAIPVDIHVHRISNRLG 112
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V T +PE+T + L +PK+ W+ IN V +GQ IC PI P C +C +
Sbjct: 113 LVD-------TKTPEETEQELMRIIPKKFWIDINDTFVMYGQNICKPISPMCSVCKIKND 165
Query: 123 C 123
C
Sbjct: 166 C 166
>gi|408381370|ref|ZP_11178919.1| endonuclease III [Methanobacterium formicicum DSM 3637]
gi|407815837|gb|EKF86400.1| endonuclease III [Methanobacterium formicicum DSM 3637]
Length = 213
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 8/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L K+ G +P + LL LPG+G K A+ V+ G+ + I VD HVHRI NRLG V+
Sbjct: 96 LDKFKGQVPDDMKNLLELPGVGRKTANCVLVYGFQ-IPAIPVDVHVHRISNRLGLVN--- 151
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
T +PE+T L+ +P+E W+ +N L+V FGQTIC P PR C + ELC
Sbjct: 152 ----TKTPEETEAELEKIVPREYWIELNDLMVQFGQTICRPQSPRHEECPLQELC 202
>gi|114566493|ref|YP_753647.1| endonuclease III [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337428|gb|ABI68276.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 207
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 78/128 (60%), Gaps = 8/128 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I + +Y G++PS DELL LPG+G K A+++ +V + G+ VDTHVHR+ NR
Sbjct: 87 LKKMAQIIVEQYQGEVPSDFDELLSLPGVGRKSANVIRSVVFKK-PGLGVDTHVHRVANR 145
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V+ + PEQT + L+ +P++ W + LL+ G+ IC +P+C C +
Sbjct: 146 LGLVN-------SKLPEQTEKALKEQIPEKCWSEAHHLLIFHGRRICQARKPQCNNCVLE 198
Query: 121 ELCPSAFK 128
LC F+
Sbjct: 199 GLCEKRFE 206
>gi|448729244|ref|ZP_21711562.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
gi|445795639|gb|EMA46163.1| endonuclease III [Halococcus saccharolyticus DSM 5350]
Length = 227
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A I + ++DG++P ++ EL LPG+G K A++V+ G + V+GI VDTHV RI R
Sbjct: 95 IRESAQIVVDEHDGEVPDTMTELTDLPGVGRKTANVVLQHGHDVVEGIVVDTHVQRITRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE+ L ++P++ W L + G+ CT P C C++
Sbjct: 155 LGLTDE-------KRPEKIETDLMAFVPEDRWQAFTHLFISHGRATCTARNPDCADCTLE 207
Query: 121 ELCPSAFKDSS 131
++CPS+ DS+
Sbjct: 208 DICPSSKADSA 218
>gi|406873147|gb|EKD23384.1| hypothetical protein ACD_82C00079G0001, partial [uncultured
bacterium]
Length = 108
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 68/102 (66%), Gaps = 8/102 (7%)
Query: 22 ELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTRE 81
+LL LPG+G K A+LV++VG+ V ICVDTHVHRI NRLG V KT +P++T
Sbjct: 6 DLLELPGVGRKTANLVLSVGFG-VPAICVDTHVHRISNRLGLV-------KTKNPDETEI 57
Query: 82 VLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
L+ LP++ W+ N LLV +GQ IC PI P C C++S LC
Sbjct: 58 ALKKILPQKYWLEYNNLLVKWGQNICVPISPHCSKCAISHLC 99
>gi|389580745|ref|ZP_10170772.1| putative endoIII-related endonuclease [Desulfobacter postgatei
2ac9]
gi|389402380|gb|EIM64602.1| putative endoIII-related endonuclease [Desulfobacter postgatei
2ac9]
Length = 223
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 73/132 (55%), Gaps = 9/132 (6%)
Query: 6 PICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVS 65
P L + G +P +D L+ LPG+G K A+LV V ++ ICVDTHVHRI N G+V
Sbjct: 100 PEALDAFQGQVPDEIDALVTLPGVGRKTANLVRAVAFDK-DAICVDTHVHRIMNIWGYV- 157
Query: 66 QPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
KT +P T + L+ LPK+ W +N +LV FGQ C P+ P C C + + CP
Sbjct: 158 ------KTKTPLDTEKALRKKLPKKFWKEVNRILVTFGQGTCRPVGPHCYRCVLEKHCPQ 211
Query: 126 -AFKDSSSPSSK 136
K + SP +
Sbjct: 212 IGVKPAKSPKKE 223
>gi|295107016|emb|CBL04559.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III
[Gordonibacter pamelaeae 7-10-1-b]
Length = 220
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K A + +T Y G+IP +DEL LPG+G K A++V+N + V+GI VDTHV RI +RL
Sbjct: 99 KCAQMVVTDYGGEIPRDIDELQKLPGVGRKTANVVLNEAFGIVEGIAVDTHVFRIAHRLK 158
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+ +P +T L P+E W PIN V FG+ C P+CG C + +L
Sbjct: 159 FAGPSA-----DTPAKTETALLKLYPREYWGPINHQWVLFGRETCIARSPKCGECFICDL 213
Query: 123 CPS 125
CPS
Sbjct: 214 CPS 216
>gi|315230941|ref|YP_004071377.1| endonuclease III [Thermococcus barophilus MP]
gi|315183969|gb|ADT84154.1| endonuclease III [Thermococcus barophilus MP]
Length = 236
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I L KY G +P L+EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG ++
Sbjct: 112 IILEKYGGKVPDMLEELVKLPGIGRKCANIVLAYGFGK-QAIPVDTHVNRISKRLG-LAP 169
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
P + PE+ E L+ +PKE W+ +N +V G+ IC PI PRC C + LCP A
Sbjct: 170 P-----KAPPEKVEEYLKELIPKELWIYVNHAMVDHGKAICRPISPRCDECPLKTLCPYA 224
>gi|406909226|gb|EKD49522.1| hypothetical protein ACD_63C00115G0009 [uncultured bacterium]
Length = 220
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K +A L KY+G++P +L EL+ LPG+G K A+ V+ + + I VDTHVHRI NR
Sbjct: 91 IKSVAETLLKKYNGNVPRNLPELVKLPGVGRKTANCVLVYAYK-LPAIPVDTHVHRISNR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V +T +PE+T L +PK W+ +N LLV G+ C P P+C C V+
Sbjct: 150 IGLV-------RTKAPEETEFALMKTVPKRYWIDMNRLLVLHGKKTCLPRGPKCDSCVVA 202
Query: 121 ELCPSAFKDSSS 132
E C +K+S+S
Sbjct: 203 EYC--WYKNSNS 212
>gi|383763496|ref|YP_005442478.1| DNA glycosylase/AP lyase [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381383764|dbj|BAM00581.1| DNA glycosylase/AP lyase [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 220
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ +YDG++P+ +++LL L G+ K A++V+ V + GI VDTHV R+ NRLG +
Sbjct: 108 VEEYDGEVPADMEKLLTLAGVARKTANVVLGVAYGIADGIVVDTHVKRLANRLGLSAH-- 165
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
S P++ + L P+EEW+ + LL+ G+ +C +P CG C + LCPSA
Sbjct: 166 -----SDPDKIEKDLMAITPREEWIDLAHLLIFHGRRVCDARKPNCGGCVIRHLCPSA 218
>gi|118577076|ref|YP_876819.1| EndoIII-related endonuclease [Cenarchaeum symbiosum A]
gi|118195597|gb|ABK78515.1| EndoIII-related endonuclease [Cenarchaeum symbiosum A]
Length = 277
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 9/134 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I TKY G +P L+ L+ LPG+G K A+ V+ + I VD HVHRI NRLG
Sbjct: 95 EVARIIDTKYGGRVPDDLETLVGLPGVGRKTANCVLVYAFEK-PAIPVDIHVHRISNRLG 153
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V T +PE+T L +PK W+ +N + V +GQ IC P+ P C +C + L
Sbjct: 154 LVD-------TRTPEETEAALTKKVPKRHWLHVNDIFVMYGQNICKPVSPMCEVCGIRSL 206
Query: 123 CPSAFKDSSSPSSK 136
C + +S+S S +
Sbjct: 207 C-KYYANSASLSKR 219
>gi|323452320|gb|EGB08194.1| hypothetical protein AURANDRAFT_14127, partial [Aureococcus
anophagefferens]
Length = 213
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 10/125 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGW-NNVQGICVDTHVHRICN 59
+++ A +C Y GD+P L + LPG+G K+A L+ W ++ G+ VDTH HRI N
Sbjct: 98 LRRAAELCRDSYGGDVPRDLPSIRALPGVGDKVAALLTQAAWGDDAGGVAVDTHFHRIAN 157
Query: 60 RLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
RLGWV+ T++ T+ ++ +LP++ WV NPLLVGFGQ +C P C C V
Sbjct: 158 RLGWVA-------TATAAATKRDVEAFLPRDRWVAANPLLVGFGQEVCG-YAPNCESCPV 209
Query: 120 SELCP 124
+ CP
Sbjct: 210 AA-CP 213
>gi|323456037|gb|EGB11904.1| hypothetical protein AURANDRAFT_14212, partial [Aureococcus
anophagefferens]
Length = 218
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G +P ++D+LL LPG+GPKMA LV+ + G+ VDTHVHRICN+LGW
Sbjct: 116 HGGAVPGTMDDLLALPGVGPKMALLVLKCAFGVTAGVSVDTHVHRICNQLGWTGGAPTTD 175
Query: 72 K----TSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICT 108
K T PE+TR ++ W+P+ W +N LLVG GQ + T
Sbjct: 176 KANFATKDPEKTRRAVESWMPRAIWGDVNWLLVGLGQEVQT 216
>gi|430743238|ref|YP_007202367.1| endoIII-related endonuclease [Singulisphaera acidiphila DSM 18658]
gi|430014958|gb|AGA26672.1| putative endoIII-related endonuclease [Singulisphaera acidiphila
DSM 18658]
Length = 221
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++++ + ++ G +P++L+ L G+GPK+A L + VG+ I VD HVHRI NR
Sbjct: 98 LRELSRRIVEEHQGVVPNTLEGLTAFRGVGPKIAALTLAVGFGQ-PAIAVDIHVHRIVNR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+VS T SPE+T EVL LP+ W+ IN LV FG+ ICT RP+C C +
Sbjct: 157 WGYVS-------THSPEKTAEVLSETLPQHYWIEINERLVPFGKFICTGTRPKCSTCVLL 209
Query: 121 ELC 123
+C
Sbjct: 210 SMC 212
>gi|294944113|ref|XP_002784093.1| endonuclease III, putative [Perkinsus marinus ATCC 50983]
gi|239897127|gb|EER15889.1| endonuclease III, putative [Perkinsus marinus ATCC 50983]
Length = 292
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 67/105 (63%), Gaps = 7/105 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQ-GICVDTHVHRICNRL 61
K+A I +++G +P S+++LL LPG+GPKMA LVM +G + GICVDTHVHRI L
Sbjct: 84 KVANILKEQFNGKVPDSMEDLLSLPGVGPKMAVLVMEIGHGHRDAGICVDTHVHRIAAML 143
Query: 62 GWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTI 106
GW + +PE TR+ L+ LP E W +N LLVG GQ +
Sbjct: 144 GWT------KNAKTPEATRQQLEARLPLEVWPDMNLLLVGLGQMV 182
>gi|288932565|ref|YP_003436625.1| DNA-(apurinic or apyrimidinic site) lyase [Ferroglobus placidus DSM
10642]
gi|288894813|gb|ADC66350.1| DNA-(apurinic or apyrimidinic site) lyase [Ferroglobus placidus DSM
10642]
Length = 213
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ I + +++ +P L++LL LPG+G K+A++V+ + + I VDTHVHRI NR
Sbjct: 89 LKKLGEILVKEFNSRVPDKLEDLLKLPGVGRKVANVVLAEAFGK-EAIAVDTHVHRISNR 147
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V ++ ++ +PK+ W +N +VGFGQTIC PI+P+C C +
Sbjct: 148 LGLVETKTPEETEEELKKI-------VPKKYWRRVNKAMVGFGQTICKPIKPKCNECKLV 200
Query: 121 ELC 123
E+C
Sbjct: 201 EIC 203
>gi|162452188|ref|YP_001614555.1| endonuclease III [Sorangium cellulosum So ce56]
gi|161162770|emb|CAN94075.1| endonuclease III [Sorangium cellulosum So ce56]
Length = 253
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 7/120 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++ G++P +L EL+ LPG+G K A++V+ V + +G+ VDTHV R+ RLGW +
Sbjct: 125 IERHGGEVPRTLAELVKLPGVGRKTANVVLGVAFGAPEGVVVDTHVQRLSQRLGWTT--- 181
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+ PEQ L P+ +W ++ L+ G+ IC +P CG C +S+ CPSAF+
Sbjct: 182 ----SDKPEQIERDLVALFPRRDWDMLSHTLIFHGRRICFARKPACGGCGISDACPSAFR 237
>gi|139438722|ref|ZP_01772206.1| Hypothetical protein COLAER_01208 [Collinsella aerofaciens ATCC
25986]
gi|133775802|gb|EBA39622.1| endonuclease III [Collinsella aerofaciens ATCC 25986]
Length = 221
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + Y G++P+ + EL+ LPG+G K A++V+NVG+ V+GI VDTHV+RI +RL +
Sbjct: 100 AQMIVADYGGEVPADMKELVKLPGVGRKTANIVLNVGYGIVEGIAVDTHVNRIAHRL--M 157
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
P K P +T + L LP E W +N + FG+ IC +P+C C +++LCP
Sbjct: 158 LSP--KTHAKEPLKTEQDLLKILPHEYWESVNHQWITFGREICDARKPKCDECPLADLCP 215
Query: 125 S 125
S
Sbjct: 216 S 216
>gi|451947339|ref|YP_007467934.1| exodeoxyribonuclease III [Desulfocapsa sulfexigens DSM 10523]
gi|451906687|gb|AGF78281.1| exodeoxyribonuclease III [Desulfocapsa sulfexigens DSM 10523]
Length = 478
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 47/112 (41%), Positives = 69/112 (61%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ +P++++ LL LPG+G K A+LV+ + + ICVDTHVHRI N G+V
Sbjct: 103 FGSKVPNTMEGLLTLPGVGRKTANLVLAQAFG-IPAICVDTHVHRIMNIWGYV------- 154
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+T +PEQT L+ LP++ W+ +N LLV FGQ C P+ P C C ++E C
Sbjct: 155 ETKTPEQTEMALRKKLPEKYWILVNSLLVAFGQGTCRPVGPHCDRCVLAESC 206
>gi|206900947|ref|YP_002250401.1| endonuclease III [Dictyoglomus thermophilum H-6-12]
gi|206740050|gb|ACI19108.1| endonuclease III [Dictyoglomus thermophilum H-6-12]
Length = 210
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 7/123 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A I L KY G +P +++ELL LPG+ K A++V++ G+ +GI VDTHV R+ R
Sbjct: 93 AQIILEKYGGKVPDTMEELLKLPGVARKTANVVLSAGYGKNEGIVVDTHVDRLSKRFNLS 152
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ R ++ + L +P+EEW + LL+ G+ +C P+C C ++++CP
Sbjct: 153 KEKNR-------DKLEQDLMKIVPREEWANFSYLLIHHGRNVCKAKNPKCDECILNDICP 205
Query: 125 SAF 127
SAF
Sbjct: 206 SAF 208
>gi|206602825|gb|EDZ39306.1| Putative endonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 210
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K IA LT+++G IP +L+ LL LPG+G K A+LV+ VG+ +G CVD HVHRI NR
Sbjct: 87 IKTIAERVLTEFEGKIPETLEGLLSLPGVGLKTANLVLTVGFEK-EGFCVDIHVHRILNR 145
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC 117
G + +T SP++T +++ LP++ N LLV FGQ C P+ P C +C
Sbjct: 146 WGVI-------QTHSPDETYRIVEPVLPRKWKRRANALLVSFGQHFCRPVSPFCSVC 195
>gi|261403295|ref|YP_003247519.1| DNA-(apurinic or apyrimidinic site) lyase [Methanocaldococcus
vulcanius M7]
gi|261370288|gb|ACX73037.1| DNA-(apurinic or apyrimidinic site) lyase [Methanocaldococcus
vulcanius M7]
Length = 346
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 11/126 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I +Y G +P+SL++LL LPG+G K A+LV+ + ++ GICVDTHVHRICNR
Sbjct: 88 LKKMAKILKEEYGGKVPNSLEDLLKLPGVGRKTANLVLTLAFDK-DGICVDTHVHRICNR 146
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--S 118
W T +PE+T L+ LPK+ W IN LLV FG+ IC+P +P+C C
Sbjct: 147 --WEIVE-----TETPEETEFELRKKLPKKYWKVINNLLVVFGKEICSP-KPKCEKCFYE 198
Query: 119 VSELCP 124
+ + CP
Sbjct: 199 IRDKCP 204
>gi|374852375|dbj|BAL55309.1| endonuclease III [uncultured Chlorobi bacterium]
Length = 204
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L ++ G +P +L+EL LPG+G K A++V+ + QGI VDTHV RI RLG+
Sbjct: 92 LERFGGQVPHTLEELTSLPGVGRKTANVVLG-EFFEPQGIVVDTHVARIVQRLGFA---- 146
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+TS+ E L +P+EEWV L++ G+ IC RPRC C +++LCPSA +
Sbjct: 147 ---ETSNREHIERRLMELVPREEWVRFTHLMIAHGRAICRARRPRCSECVLADLCPSAHR 203
>gi|115433258|ref|XP_001216766.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189618|gb|EAU31318.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 667
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 9/98 (9%)
Query: 33 MAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEW 92
MA L M+ W +GI VD HVHRI N GW KT +PE+TR L+ WLPK++W
Sbjct: 1 MAFLCMSAAWGKHEGIGVDVHVHRITNLWGW-------HKTKNPEETRMALESWLPKDKW 53
Query: 93 VPINPLLVGFGQTICTPIRPRCGMCSV--SELCPSAFK 128
IN LLVG GQT+C P+ RCG C + ++LC S +
Sbjct: 54 HEINKLLVGLGQTVCLPVGRRCGECDLAGTKLCKSEIR 91
>gi|402829196|ref|ZP_10878072.1| endonuclease III [Slackia sp. CM382]
gi|402284177|gb|EJU32680.1| endonuclease III [Slackia sp. CM382]
Length = 276
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A ++ + G +P ++DEL LPG+G K A++VM + + QGI VDTHV RI +RLG+
Sbjct: 157 AQTVVSDFGGVVPRTMDELTRLPGVGRKTANVVMAQAFRDAQGIAVDTHVFRIAHRLGFA 216
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ + +PE+ L PK +W+ IN V FG+ C PRC C V+++CP
Sbjct: 217 T-----RNDDTPEKVESKLLRIYPKPDWLFINHQWVHFGREFCQARNPRCAECFVADVCP 271
>gi|403215722|emb|CCK70221.1| hypothetical protein KNAG_0D04820 [Kazachstania naganishii CBS
8797]
Length = 443
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y GDIP + EL LPG+GPKM +L + W + GICVD HV R C WV P R
Sbjct: 244 YGGDIPETAHELQALPGVGPKMTYLTLQKAWGKMDGICVDVHVDRFCKLFKWVD-PNR-- 300
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
+P+ TR LQ WLP W IN LLVG GQ I P R +C
Sbjct: 301 -CKTPDMTRIALQEWLPLPLWSEINSLLVGMGQLIDRPRANRVKICE 346
>gi|339444803|ref|YP_004710807.1| putative EndoIII protein [Eggerthella sp. YY7918]
gi|338904555|dbj|BAK44406.1| predicted EndoIII protein [Eggerthella sp. YY7918]
Length = 220
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K A + + Y G+IP +DEL LPG+G K A++V+N + V+GI VDTHV RI +RL
Sbjct: 99 KCAQMVVADYAGEIPRDIDELQKLPGVGRKTANVVLNEAFGIVEGIAVDTHVFRIAHRLK 158
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+ + +P +T L P+E W PIN V FG+ CT P+C C + +L
Sbjct: 159 FAG-----PSSDTPAKTETALLKLYPREYWGPINHQWVLFGRETCTARNPKCAECFLCDL 213
Query: 123 CPS 125
CPS
Sbjct: 214 CPS 216
>gi|224367145|ref|YP_002601308.1| protein NthA [Desulfobacterium autotrophicum HRM2]
gi|223689861|gb|ACN13144.1| NthA [Desulfobacterium autotrophicum HRM2]
Length = 221
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 6 PICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVS 65
P + +DG +P ++D+L+ LPG+G K A+LVM+V + ICVDTHVHRI N +V
Sbjct: 98 PKAMEAFDGKVPQNIDDLVTLPGVGRKTANLVMSVAFKK-DAICVDTHVHRIMNLWEYVD 156
Query: 66 QPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
T +P +T L+ LP + W +N +LV FGQ C P+ C +C + +CP
Sbjct: 157 -------TRNPLETEMALRKKLPPKLWQRVNAILVAFGQGTCRPVGSHCDVCVLESMCP 208
>gi|410478975|ref|YP_006766612.1| EndoIII-related endonuclease [Leptospirillum ferriphilum ML-04]
gi|406774227|gb|AFS53652.1| putative EndoIII-related endonuclease [Leptospirillum ferriphilum
ML-04]
Length = 225
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K IA LT++ G IP +L+ LL LPG+G K A+LV+ VG+ +G CVD HVHRI NR
Sbjct: 102 IKTIAERVLTEFGGKIPDTLEGLLSLPGVGLKTANLVLTVGFEK-EGFCVDIHVHRILNR 160
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC 117
G + +T SP++T +++ LP++ N LLV FGQ C P+ P C +C
Sbjct: 161 WGVI-------QTHSPDETYHIVEPVLPRKWKRRANALLVAFGQHFCRPVSPFCSVC 210
>gi|424869508|ref|ZP_18293209.1| Putative endonuclease III [Leptospirillum sp. Group II 'C75']
gi|124514281|gb|EAY55795.1| putative endonuclease III [Leptospirillum rubarum]
gi|387220626|gb|EIJ75278.1| Putative endonuclease III [Leptospirillum sp. Group II 'C75']
Length = 210
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K IA LT++ G IP +L+ LL LPG+G K A+LV+ VG+ +G CVD HVHRI NR
Sbjct: 87 IKTIAERVLTEFGGKIPDTLEGLLSLPGVGLKTANLVLTVGFEK-EGFCVDIHVHRILNR 145
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC 117
G + +T SP++T +++ LP++ N LLV FGQ C P+ P C +C
Sbjct: 146 WGVI-------QTHSPDETYHIVEPVLPRKWKRRANALLVAFGQHFCRPVSPFCSVC 195
>gi|406993656|gb|EKE12770.1| Endonuclease III (DNA-(Apurinic or apyrimidinic site) lyase)
[uncultured bacterium]
Length = 221
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + LT++ G +P ++ EL+ +PG+ K A+++M W+ +GI VDTHV R+ NRLG
Sbjct: 104 AKVVLTQFGGSVPKTIAELIKIPGVARKSANVIMQELWDVAEGIVVDTHVTRVSNRLGLT 163
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ Q E +E+++L LPKE W I+ +V G+ +C +P+C C ++++CP
Sbjct: 164 ----KNQDAVKIE--KELMEL-LPKEYWRNISGAMVLHGRYVCIARKPKCAECVLNKICP 216
Query: 125 SAFK 128
SAFK
Sbjct: 217 SAFK 220
>gi|406971853|gb|EKD95801.1| Endonuclease III (DNA-(Apurinic or apyrimidinic site) lyase),
partial [uncultured bacterium]
Length = 154
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 9/125 (7%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW- 63
A + LT++ G +P +L +L+ +PGI K A+++M W+ +GI VDTHV R+ NRLG
Sbjct: 37 AKVILTQFGGSVPKTLADLIKIPGIARKSANVIMQELWDVAEGIVVDTHVTRVSNRLGLT 96
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
++Q K + E LPKE W I+ LV G+ ICT +P+C C ++++C
Sbjct: 97 INQDAVKIEKDLTE--------LLPKEYWRNISGALVLHGRYICTARKPKCSECVLNKIC 148
Query: 124 PSAFK 128
PSAFK
Sbjct: 149 PSAFK 153
>gi|375084054|ref|ZP_09731064.1| endonuclease III [Thermococcus litoralis DSM 5473]
gi|374741220|gb|EHR77648.1| endonuclease III [Thermococcus litoralis DSM 5473]
Length = 237
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+ + I L +Y G +P ++EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG
Sbjct: 111 RASQIILEEYGGKVPDKIEELMKLPGIGRKCANIVLAYGFGK-QTIPVDTHVNRISKRLG 169
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
++ P SPE+ E L+ +PK+ W+ +N +V G+ IC PI P+C C + +L
Sbjct: 170 -LAPP-----KVSPEKVEEYLKQLIPKDLWIYVNHAMVDHGKRICKPINPKCTECPLQDL 223
Query: 123 CPSA 126
CP A
Sbjct: 224 CPYA 227
>gi|223940410|ref|ZP_03632263.1| DNA-(apurinic or apyrimidinic site) lyase [bacterium Ellin514]
gi|223890905|gb|EEF57413.1| DNA-(apurinic or apyrimidinic site) lyase [bacterium Ellin514]
Length = 242
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 75/124 (60%), Gaps = 10/124 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQG-ICVDTHVHRICN 59
++ IA + ++ G +P ++L+ L G+GPK A+LV+ + QG I VD HVHR+ N
Sbjct: 119 IRTIASEAVQRFGGALPCDGEKLMELHGVGPKCANLVLGIACG--QGKISVDIHVHRVTN 176
Query: 60 RLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
R G+V +T +PEQT L+ LPK+ W+ IN LLV FG+ ICT P+C C V
Sbjct: 177 RWGYV-------QTRTPEQTMAALEAKLPKQYWIEINSLLVPFGKHICTGRTPKCSTCPV 229
Query: 120 SELC 123
E+C
Sbjct: 230 LEMC 233
>gi|289193061|ref|YP_003459002.1| DNA-(apurinic or apyrimidinic site) lyase [Methanocaldococcus sp.
FS406-22]
gi|288939511|gb|ADC70266.1| DNA-(apurinic or apyrimidinic site) lyase [Methanocaldococcus sp.
FS406-22]
Length = 344
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 74/115 (64%), Gaps = 11/115 (9%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y+G +P SL+ELL LPG+G K A+LV+ + +N GICVDTHVHRICNR V
Sbjct: 97 YNGRVPDSLEELLKLPGVGRKTANLVITLAFNK-DGICVDTHVHRICNRWEIVD------ 149
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--SVSELCP 124
T +PE+T L+ LPK+ W IN LLV FG+ IC+P +P+C C + E CP
Sbjct: 150 -TETPEETEFELRKKLPKKYWKVINNLLVVFGREICSP-KPKCDKCFEEIREKCP 202
>gi|444911067|ref|ZP_21231243.1| Endonuclease III [Cystobacter fuscus DSM 2262]
gi|444718405|gb|ELW59218.1| Endonuclease III [Cystobacter fuscus DSM 2262]
Length = 232
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ IA + ++ G +P+ ++ L G+GPK AHL + + I VD HVHR+ NR
Sbjct: 109 IHDIAVRAVEEFVGALPADVEVLQSFKGVGPKCAHLALGIAGGQTY-ISVDVHVHRVTNR 167
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V T +PEQT L+ LP+ WV +N LLV FG+ +CT +RPRC C V
Sbjct: 168 WGYV-------HTRTPEQTLAALEAKLPRAHWVELNRLLVPFGKHVCTGVRPRCSTCPVL 220
Query: 121 ELC 123
+C
Sbjct: 221 SMC 223
>gi|37521390|ref|NP_924767.1| endonuclease III [Gloeobacter violaceus PCC 7421]
gi|35212387|dbj|BAC89762.1| endonuclease III [Gloeobacter violaceus PCC 7421]
Length = 220
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 13/136 (9%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
+A I L KY G +P +D LL LPGIG K A+ V+ +N + ICVDTH+H+I NRLGW
Sbjct: 97 MATILLEKYGGRVPDDIDALLALPGIGRKTANCVLIYAFNR-EAICVDTHMHKIANRLGW 155
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTIC-TPIRPRCGMCSVSEL 122
V+ T +PEQT + L++ +P++ W N L + G+ IC + P C C V
Sbjct: 156 VT-------TKTPEQTEKALEVVMPRDLWAGSNRLFLQHGRAICLSGAPPLCSRCPVRPW 208
Query: 123 CPSAFKDSSSPSSKSR 138
C P+++ R
Sbjct: 209 CAY----GQEPTARKR 220
>gi|161527564|ref|YP_001581390.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
gi|160338865|gb|ABX11952.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrosopumilus maritimus
SCM1]
Length = 218
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 68/121 (56%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I +KY G +P LD L+ LPG+G K A+ V+ + I VD HVHRI NRLG
Sbjct: 97 EVAKIIDSKYKGKVPEDLDTLVQLPGVGRKTANCVLVYAFEK-PAIPVDIHVHRISNRLG 155
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V +T +PE+T + L + K+ W+ IN V +GQ IC PI P C +C +
Sbjct: 156 LV-------ETKNPEETEQELMKKVDKKFWIDINDTFVMYGQNICKPISPMCDVCKIKRS 208
Query: 123 C 123
C
Sbjct: 209 C 209
>gi|385802943|ref|YP_005839343.1| DNA-(apurinic or apyrimidinic site) lyase [Haloquadratum walsbyi
C23]
gi|339728435|emb|CCC39587.1| endonuclease III [Haloquadratum walsbyi C23]
Length = 228
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I + YDGD+P ++DEL L G+G K A++V+ G + V+GI VDTHV RI R
Sbjct: 95 LKSIGETLASDYDGDVPDTMDELTALSGVGRKTANVVLQHGHDVVEGIVVDTHVQRITRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + +P+Q L +P+ EW L + G+ CT P C C +
Sbjct: 155 LGLTDE-------QTPKQIETDLMESVPESEWQQFTHLFISHGRETCTAQNPDCTDCILE 207
Query: 121 ELCPSA 126
+CPS+
Sbjct: 208 SVCPSS 213
>gi|257783933|ref|YP_003179150.1| endonuclease III [Atopobium parvulum DSM 20469]
gi|257472440|gb|ACV50559.1| endonuclease III [Atopobium parvulum DSM 20469]
Length = 223
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+ A I LT+Y G++P ++++L+ LPG+G K A++V+N +N V GI VDTHV+RI R+
Sbjct: 98 ETAQILLTEYGGEVPGTMEDLVTLPGVGRKTANIVLNKMFNVVDGIAVDTHVYRISKRM- 156
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
R S+P + L LP E W +N + FG+ CT P+C C +S++
Sbjct: 157 ------RLSSASTPLAAEKDLLALLPHELWKDVNEEWIHFGRETCTARNPKCVGCPMSDI 210
Query: 123 CPS 125
CPS
Sbjct: 211 CPS 213
>gi|426255021|ref|XP_004021164.1| PREDICTED: endonuclease III-like protein 1 [Ovis aries]
Length = 265
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 50 VDTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTP 109
VDTHVHRI NRL W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P
Sbjct: 191 VDTHVHRIANRLRWT-----KEATRSPEETRRALEEWLPRELWREINGLLVGFGQQTCLP 245
Query: 110 IRPRCGMCSVSELCPSA 126
+RPRC C LCP+A
Sbjct: 246 VRPRCQACLNRALCPAA 262
>gi|257791041|ref|YP_003181647.1| endonuclease III [Eggerthella lenta DSM 2243]
gi|257474938|gb|ACV55258.1| endonuclease III [Eggerthella lenta DSM 2243]
Length = 220
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K A + + Y G+IP +DEL LPG+G K A++V+N + V+GI VDTHV RI +RL
Sbjct: 99 KCAQMVVADYGGEIPRDIDELQKLPGVGRKTANVVLNEAFGIVEGIAVDTHVFRIAHRLK 158
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+ +P +T L P+E W PIN V FG+ C P+C C + +L
Sbjct: 159 FAG-----PSADTPAKTEAALLKLYPREYWGPINHQWVLFGRETCIARNPKCATCFLCDL 213
Query: 123 CPS 125
CPS
Sbjct: 214 CPS 216
>gi|317488242|ref|ZP_07946810.1| endonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325830754|ref|ZP_08164138.1| endonuclease III [Eggerthella sp. HGA1]
gi|316912654|gb|EFV34195.1| endonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325487161|gb|EGC89604.1| endonuclease III [Eggerthella sp. HGA1]
Length = 220
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K A + + Y G+IP +DEL LPG+G K A++V+N + V+GI VDTHV RI +RL
Sbjct: 99 KCAQMVVADYGGEIPRDIDELQKLPGVGRKTANVVLNEAFGIVEGIAVDTHVFRIAHRLK 158
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+ +P +T L P+E W PIN V FG+ C P+C C + +L
Sbjct: 159 FAG-----PSADTPAKTEAALLKLYPREYWGPINHQWVLFGRETCIARNPKCATCFLCDL 213
Query: 123 CPS 125
CPS
Sbjct: 214 CPS 216
>gi|110667504|ref|YP_657315.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Haloquadratum walsbyi DSM 16790]
gi|109625251|emb|CAJ51673.1| endonuclease III [Haloquadratum walsbyi DSM 16790]
Length = 228
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I YDGD+P ++DEL L G+G K A++V+ G + V+GI VDTHV RI R
Sbjct: 95 LKSIGETLAADYDGDVPDTMDELTALSGVGRKTANVVLQHGHDVVEGIVVDTHVQRITRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + +P+Q L +P+ EW L + G+ CT P C C +
Sbjct: 155 LGLTDE-------QTPKQIETDLMESVPESEWQQFTHLFISHGRETCTAQNPDCTDCILE 207
Query: 121 ELCPSA 126
+CPS+
Sbjct: 208 SVCPSS 213
>gi|251771121|gb|EES51705.1| putative endonuclease III [Leptospirillum ferrodiazotrophum]
Length = 213
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 73/124 (58%), Gaps = 9/124 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+IA I L K+ G +PS + LL LPG+G K A LV+ G+ + VDTHVHRI NR
Sbjct: 91 IKQIAKIVLEKWKGSLPSEISPLLSLPGVGLKTATLVLGAGFGK-SVLTVDTHVHRIANR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G V KT + T L +P + +NP+LV FGQTIC P+ PRC C++S
Sbjct: 150 WGAV-------KTKDADATYWELDKIVPNTLKLKVNPVLVSFGQTICLPLSPRCSECTLS 202
Query: 121 ELCP 124
+ CP
Sbjct: 203 Q-CP 205
>gi|337286318|ref|YP_004625791.1| endonuclease III [Thermodesulfatator indicus DSM 15286]
gi|335359146|gb|AEH44827.1| endonuclease III [Thermodesulfatator indicus DSM 15286]
Length = 224
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + + K+ G++P S++++L LPG+ K A++V++ + V+GI VDTHV R+ R
Sbjct: 103 IKECARLIIEKFGGEVPRSMEDMLKLPGVARKTANIVLSNAYGVVEGIPVDTHVRRLAQR 162
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ K P++ + L +P+EEW I + G+ IC +P C C V
Sbjct: 163 LGFT-------KEKKPDKIEQDLMAIIPREEWGQIAYVFQAHGRKICKARKPLCDQCVVK 215
Query: 121 ELCPS 125
+LCPS
Sbjct: 216 DLCPS 220
>gi|328956172|ref|YP_004373505.1| DNA-(apurinic or apyrimidinic site) lyase [Coriobacterium glomerans
PW2]
gi|328456496|gb|AEB07690.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Coriobacterium glomerans PW2]
Length = 220
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + ++ + G++P+ + +L+ LPG+G K A++V+NV +N V+GI VDTHV+RI +RLG
Sbjct: 100 AQMIVSDFGGEVPADMKQLMRLPGVGRKTANIVLNVSFNIVEGIAVDTHVNRIAHRLGL- 158
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ + P +T + L LP + W +N + G+ IC PRC +C ++++CP
Sbjct: 159 ---SPRTHLNDPLKTEQDLLGLLPSQWWGSVNHQWIKLGREICIARNPRCNLCPLADICP 215
Query: 125 SA 126
SA
Sbjct: 216 SA 217
>gi|256810186|ref|YP_003127555.1| DNA-(apurinic or apyrimidinic site) lyase [Methanocaldococcus
fervens AG86]
gi|256793386|gb|ACV24055.1| DNA-(apurinic or apyrimidinic site) lyase [Methanocaldococcus
fervens AG86]
Length = 344
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 76/120 (63%), Gaps = 11/120 (9%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I KY+G +P SL+ELL LPG+G K A+LV+ + ++ GICVDTHVHRICNR V
Sbjct: 92 ILKEKYNGKVPDSLEELLKLPGVGRKTANLVITLAFDK-DGICVDTHVHRICNRWEIVD- 149
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--SVSELCP 124
T +PE+T L+ LPK+ W IN LLV FG+ IC+P +P+C C + + CP
Sbjct: 150 ------TETPEETEFELRKKLPKKYWKVINNLLVVFGKEICSP-KPKCNKCFEEIRKKCP 202
>gi|346311311|ref|ZP_08853318.1| endonuclease III [Collinsella tanakaei YIT 12063]
gi|345901141|gb|EGX70949.1| endonuclease III [Collinsella tanakaei YIT 12063]
Length = 222
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + Y G++P+ + EL+ LPG+G K A++V+NV + V GI VDTHV+RI +RL
Sbjct: 100 AQMIVADYGGEVPADMKELVKLPGVGRKTANIVLNVAFGIVDGIAVDTHVNRIAHRLKLS 159
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ K+ P +T + L LP+E W +N + G+ IC +P CG C ++++CP
Sbjct: 160 PKTHEKE----PLKTEQDLLKILPREYWNDVNHQWIMLGREICDARKPLCGECPLADICP 215
Query: 125 SA 126
SA
Sbjct: 216 SA 217
>gi|310824392|ref|YP_003956750.1| base excision DNA repair protein [Stigmatella aurantiaca DW4/3-1]
gi|309397464|gb|ADO74923.1| Base excision DNA repair protein, HhH-GPD family [Stigmatella
aurantiaca DW4/3-1]
Length = 226
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ +A + ++ G +P+ + L G+GPK AHL + V + + I VD HVHR+ NR
Sbjct: 103 IHALAKRTVEEFGGQLPADAEVLQSFRGVGPKCAHLALGVACGH-EAISVDIHVHRVTNR 161
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V +T SPEQT + L+ LP+ W+ IN LLV FG+ +CT RP+C C V
Sbjct: 162 WGYV-------RTRSPEQTLKALEARLPRAYWIEINRLLVPFGKHVCTGSRPQCSRCPVL 214
Query: 121 ELC 123
+C
Sbjct: 215 AMC 217
>gi|210631996|ref|ZP_03297161.1| hypothetical protein COLSTE_01054 [Collinsella stercoris DSM 13279]
gi|210159798|gb|EEA90769.1| endonuclease III [Collinsella stercoris DSM 13279]
Length = 220
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + Y G +P+ + EL+ LPG+G K A++V+NVG+ V GI VDTHV+RI +RL
Sbjct: 100 AQMIVADYGGVVPADMKELVKLPGVGRKTANIVLNVGYGIVDGIAVDTHVNRIAHRLKLS 159
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ K+ P +T + L LP+E W +N + G+ IC +P CG C ++++CP
Sbjct: 160 PKTHEKE----PLKTEQDLLKILPREYWNDVNHQWIMLGREICDARKPLCGECPLADICP 215
Query: 125 SA 126
SA
Sbjct: 216 SA 217
>gi|407465823|ref|YP_006776705.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus sp. AR2]
gi|407049011|gb|AFS83763.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus sp. AR2]
Length = 216
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I KY G +P +L+ L+ LPG+G K A+ V+ + I VD HVHRI NRLG
Sbjct: 95 EVAKIIDKKYKGKVPDNLETLVELPGVGRKTANCVLVYAFEK-PAIPVDIHVHRISNRLG 153
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V T +PE+T + L + K+ W+ IN V +GQ IC PI P C +C + +
Sbjct: 154 LVD-------TKNPEETEQELMKKIQKKYWIDINDTFVMYGQNICKPISPMCNVCKIKKS 206
Query: 123 C 123
C
Sbjct: 207 C 207
>gi|115374385|ref|ZP_01461668.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
gi|115368587|gb|EAU67539.1| endonuclease III (DNA-(apurinic or apyrimidinic site)lyase)
[Stigmatella aurantiaca DW4/3-1]
Length = 195
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ +A + ++ G +P+ + L G+GPK AHL + V + + I VD HVHR+ NR
Sbjct: 72 IHALAKRTVEEFGGQLPADAEVLQSFRGVGPKCAHLALGVACGH-EAISVDIHVHRVTNR 130
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V +T SPEQT + L+ LP+ W+ IN LLV FG+ +CT RP+C C V
Sbjct: 131 WGYV-------RTRSPEQTLKALEARLPRAYWIEINRLLVPFGKHVCTGSRPQCSRCPVL 183
Query: 121 ELC 123
+C
Sbjct: 184 AMC 186
>gi|242398202|ref|YP_002993626.1| Endonuclease III [Thermococcus sibiricus MM 739]
gi|242264595|gb|ACS89277.1| Endonuclease III [Thermococcus sibiricus MM 739]
Length = 233
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 76/122 (62%), Gaps = 7/122 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+ + I L +Y G +P+ ++EL+ LPGIG K A++V+ G+ Q I VDTHV+RI RLG
Sbjct: 107 RTSQIILREYRGRVPNKIEELMKLPGIGRKCANIVLAYGFGK-QTIPVDTHVNRISKRLG 165
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
++ P T +PE+ E L+ +P++ W+ IN +V G+ IC PI P+C C +L
Sbjct: 166 -LAPP-----TVAPEKVEEYLKKLIPEDLWIYINHAMVDHGKRICKPIGPKCHECFFQDL 219
Query: 123 CP 124
CP
Sbjct: 220 CP 221
>gi|229816038|ref|ZP_04446359.1| hypothetical protein COLINT_03091 [Collinsella intestinalis DSM
13280]
gi|229808352|gb|EEP44133.1| hypothetical protein COLINT_03091 [Collinsella intestinalis DSM
13280]
Length = 220
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + Y G +P+ + EL+ LPG+G K A++V+NVG+ V GI VDTHV+RI +RL
Sbjct: 100 AQMIVADYGGVVPNEMKELVKLPGVGRKTANIVLNVGYGIVDGIAVDTHVNRIAHRLKLS 159
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ K+ P +T + L LP+E W +N + G+ IC +P CG C ++++CP
Sbjct: 160 PKTHEKE----PLKTEQDLLKILPREYWNDVNHQWIMLGREICDARKPLCGECPLADICP 215
Query: 125 SA 126
SA
Sbjct: 216 SA 217
>gi|85000285|ref|XP_954861.1| endonuclease III [Theileria annulata strain Ankara]
gi|65303007|emb|CAI75385.1| endonuclease III, putative [Theileria annulata]
Length = 377
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 7/89 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+A I +Y G +PS+ EL LPGIGPKMA+L++ V +N V G+ VD HVHRI NR
Sbjct: 292 IKKVAQILKEQYGGKVPSNKKELESLPGIGPKMANLILQVAYNMVDGVAVDIHVHRITNR 351
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPK 89
LGWV KT +PE+T LQ LPK
Sbjct: 352 LGWV-------KTKTPEETSLKLQELLPK 373
>gi|188997398|ref|YP_001931649.1| endonuclease III [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932465|gb|ACD67095.1| endonuclease III [Sulfurihydrogenibium sp. YO3AOP1]
Length = 209
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A L K+ G IP +L+EL LPG+G K A ++ V + I VDTHV R+ R
Sbjct: 88 IKECAKAILEKFSGQIPKTLEELTSLPGVGRKTASALL-VNAYKIPAIVVDTHVKRVAKR 146
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L +Q +SPE+ + L + KE WV I+ LV FG+ ICT +P+C C VS
Sbjct: 147 LKITNQ-------TSPEKVEKDLTKFFSKENWVYISNALVLFGRYICTANKPKCKECYVS 199
Query: 121 ELCPSAFKD 129
++CP K+
Sbjct: 200 DICPYEKKN 208
>gi|345006727|ref|YP_004809580.1| endonuclease III [halophilic archaeon DL31]
gi|344322353|gb|AEN07207.1| endonuclease III [halophilic archaeon DL31]
Length = 227
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I + K++G++P +++EL L G+G K A++V+ + V+GI VDTHV RI R
Sbjct: 95 LKSIGEDIVEKHNGEVPDTMEELTELSGVGRKTANVVLQHAHDVVEGIVVDTHVQRISRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L ++P+ W L + G+ +CT P CG C ++
Sbjct: 155 LGLTEE-------ERPEAIEQDLLEFVPRRNWQQFTHLFIDHGRAVCTARNPDCGDCELA 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSD 218
>gi|269215536|ref|ZP_06159390.1| endonuclease III [Slackia exigua ATCC 700122]
gi|269131023|gb|EEZ62098.1| endonuclease III [Slackia exigua ATCC 700122]
Length = 219
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G +P ++DEL LPG+G K A++VM + + QGI VDTHV RI +RLG+ + +
Sbjct: 107 FGGVVPRTMDELTRLPGVGRKTANVVMAQAFRDAQGIAVDTHVFRIAHRLGFAT-----R 161
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+PE+ L PK +W+ IN V FG+ C PRC C V+++CP
Sbjct: 162 NDDTPEKVELKLLRIYPKPDWLFINHQWVHFGREFCQARNPRCAECFVADVCP 214
>gi|108758880|ref|YP_631351.1| endonuclease III [Myxococcus xanthus DK 1622]
gi|108462760|gb|ABF87945.1| endonuclease III [Myxococcus xanthus DK 1622]
Length = 210
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L K+ G++P ++DEL+ LPG+ K A++V+N +N GI VDTHV R+ RLG
Sbjct: 98 LDKFGGEVPHTIDELVTLPGVARKTANVVLNTAFNLPSGIIVDTHVARVSQRLGLT---- 153
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K PE E L +P+E+W P V G+ CT +P+C C V ++CP
Sbjct: 154 ---KKDKPEAIEEDLMKLVPQEQWTFFGPATVLHGRYTCTAKKPKCDDCIVKDVCP 206
>gi|410721172|ref|ZP_11360516.1| putative endoIII-related endonuclease [Methanobacterium sp.
Maddingley MBC34]
gi|410599623|gb|EKQ54169.1| putative endoIII-related endonuclease [Methanobacterium sp.
Maddingley MBC34]
Length = 213
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G +P + LL LPG+G K A+ V+ G+ I VD HVHRI NRLG V
Sbjct: 98 EFKGQVPDYMKGLLELPGVGRKTANCVLVYGFQK-PAIPVDVHVHRISNRLGLVD----- 151
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
T PE+T L+ +P+E W+ +N L+V FGQTIC P PR C + ELC
Sbjct: 152 --TKHPEETEAELEKLVPREYWIELNDLMVQFGQTICRPQSPRHEECPLQELC 202
>gi|448734378|ref|ZP_21716604.1| endonuclease III [Halococcus salifodinae DSM 8989]
gi|445800426|gb|EMA50781.1| endonuclease III [Halococcus salifodinae DSM 8989]
Length = 227
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 74/131 (56%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A + + ++DG++P ++ L LPG+G K A++V+ + V+GI VDTHV RI R
Sbjct: 95 IRESAQLVVEEHDGEVPDTMAALTDLPGVGRKTANVVLQHAHDVVEGIVVDTHVQRITRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE+ L ++P++ W L + G+ CT P C C++
Sbjct: 155 LGLTDE-------ERPEKIESDLMGFVPEDRWQAFTHLFISHGRATCTARNPDCADCTLE 207
Query: 121 ELCPSAFKDSS 131
++CPS+ +DS+
Sbjct: 208 DVCPSSKRDSA 218
>gi|291280018|ref|YP_003496853.1| endonuclease III [Deferribacter desulfuricans SSM1]
gi|290754720|dbj|BAI81097.1| endonuclease III [Deferribacter desulfuricans SSM1]
Length = 212
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK++ + L KY+G IP ++EL+ LPGIG K A++++ +N + GI VDTHV RI R
Sbjct: 91 IKKLSEVILEKYEGVIPVDINELVKLPGIGRKTANVLLGNCFN-IPGIVVDTHVKRISQR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG +P++ + L +PKE+W + ++ FG+ ICT +P+C +C +
Sbjct: 150 LGLTD-------NDNPDKIEQDLMEVIPKEKWTKWSHQVIDFGRKICTAKKPKCDICEMR 202
Query: 121 ELCPSA 126
++C A
Sbjct: 203 DVCKFA 208
>gi|300711590|ref|YP_003737404.1| endonuclease III [Halalkalicoccus jeotgali B3]
gi|448296302|ref|ZP_21486361.1| endonuclease III [Halalkalicoccus jeotgali B3]
gi|299125273|gb|ADJ15612.1| endonuclease III [Halalkalicoccus jeotgali B3]
gi|445581963|gb|ELY36310.1| endonuclease III [Halalkalicoccus jeotgali B3]
Length = 227
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ I + ++DG +P ++DEL LPG+G K A++V+ G V+G+ VDTHV R+ R
Sbjct: 95 IREACAIIIEEHDGGVPDTMDELTDLPGVGRKTANVVLQHGHELVEGVVVDTHVQRLTRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + SP++ L LP+E W L + G+ CT P C C +
Sbjct: 155 LGITEE-------RSPQKIERELMALLPRERWQAFTHLCISHGRATCTARNPDCSDCVLE 207
Query: 121 ELCPSAFKDS 130
++CPS+ DS
Sbjct: 208 DVCPSSKIDS 217
>gi|289548031|ref|YP_003473019.1| endonuclease III [Thermocrinis albus DSM 14484]
gi|289181648|gb|ADC88892.1| endonuclease III [Thermocrinis albus DSM 14484]
Length = 205
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I + KY G++P ++DEL+ LPGIG K A +++ + +GI VDTHV R+ R
Sbjct: 86 LKEASRILVEKYGGEVPKTIDELVALPGIGRKSASMILYNAYGINEGIAVDTHVARVSQR 145
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG S + P++ + L PKE+W ++ LL+ G+ +CT P+ C +
Sbjct: 146 LGLTSH-------TDPQKIEKDLMQITPKEDWGKLSNLLILLGRYVCTAKNPQHHKCVLR 198
Query: 121 ELCPSA 126
++CPSA
Sbjct: 199 DICPSA 204
>gi|225872370|ref|YP_002753825.1| endonuclease III [Acidobacterium capsulatum ATCC 51196]
gi|225793386|gb|ACO33476.1| endonuclease III [Acidobacterium capsulatum ATCC 51196]
Length = 230
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 7/121 (5%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y G +P S+DELL LPG K A++V+ V + +G+ VDTHV R+ NRLG V+
Sbjct: 114 YGGKLPESMDELLTLPGAARKTANVVLGVAFGKAEGVVVDTHVLRLSNRLGLVN------ 167
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
++ P++ + L LP+E W+ + ++ G+ +C +P+C +C++ LC S K S
Sbjct: 168 -SNDPKKVEQELMQILPRERWIQFSHEMIYHGRQVCDARKPKCEVCTLETLCHSGDKTWS 226
Query: 132 S 132
S
Sbjct: 227 S 227
>gi|448470459|ref|ZP_21600466.1| endonuclease III [Halorubrum kocurii JCM 14978]
gi|445808023|gb|EMA58100.1| endonuclease III [Halorubrum kocurii JCM 14978]
Length = 227
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+YDG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 105 EYDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITDE---- 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
SP + L +P+E+W L++ G+ CT I P CG C ++++CPS D+
Sbjct: 161 ---ESPTKIERDLLDVVPEEDWQQFTHLMIDHGRATCTAINPDCGDCVLADVCPSEKGDA 217
Query: 131 S 131
Sbjct: 218 D 218
>gi|448374749|ref|ZP_21558539.1| endonuclease III [Halovivax asiaticus JCM 14624]
gi|445659875|gb|ELZ12677.1| endonuclease III [Halovivax asiaticus JCM 14624]
Length = 227
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ + + ++DG++P ++DEL LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IREACALIVEEHDGEVPDTMDELTELPGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P+ WV LL+ G+ CT P C C ++
Sbjct: 155 LGITEE-------ERPEAIEQDLLDIVPEGYWVQFTHLLIDHGRATCTARNPDCESCVLA 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSD 218
>gi|291460248|ref|ZP_06599638.1| endonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417195|gb|EFE90914.1| endonuclease III [Oribacterium sp. oral taxon 078 str. F0262]
Length = 232
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + L KY G +P L+EL LPG+G K A+L++ + I VDTHV R+ NR
Sbjct: 99 LKACAAVLLEKYGGRVPDQLEELTALPGVGRKTANLILGRVYGKA-AIVVDTHVRRVSNR 157
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG K+S P +T LQ +P+E W N ++ G+T C+ ++P+C C +
Sbjct: 158 LGLA-------KSSDPLKTELQLQDSIPREFWTRWNTRVMALGRTRCSSLKPKCESCYLK 210
Query: 121 ELCPSAFKD 129
+LCPS D
Sbjct: 211 DLCPSRDGD 219
>gi|162453022|ref|YP_001615389.1| endonuclease III [Sorangium cellulosum So ce56]
gi|161163604|emb|CAN94909.1| putative endonuclease III [Sorangium cellulosum So ce56]
Length = 213
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++ G++P+++ EL LPG+ K A++V+N ++ GI VDTHV R+ R+G
Sbjct: 101 VARFGGEVPATMAELTTLPGVARKTANVVLNTAFDIPSGIIVDTHVARLSGRIGL----- 155
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K PEQ E L +PK++W P LV G+ C +P+CG C +SE CP
Sbjct: 156 --SKREKPEQIEEDLMKIVPKDQWTFFGPALVLHGRYTCVARKPKCGECRMSEFCP 209
>gi|333979099|ref|YP_004517044.1| endonuclease III [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822580|gb|AEG15243.1| endonuclease III [Desulfotomaculum kuznetsovii DSM 6115]
Length = 229
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 10/127 (7%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + KY+ +P +L EL LLPG+G K A++V+NV + + VDTHV R+ +RLG
Sbjct: 109 ILVEKYNSQVPRTLGELELLPGVGRKTANVVLNVAFGQ-PTLPVDTHVFRVSHRLGLA-- 165
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+T E L +P+ + L+ G+TICT RPRC +C V+ LCPS
Sbjct: 166 -----RGKTPEKTEEELLAIIPEYARRAAHHQLIAHGRTICTARRPRCNICPVARLCPS- 219
Query: 127 FKDSSSP 133
+D P
Sbjct: 220 -RDVQEP 225
>gi|57234287|ref|YP_181660.1| endonuclease III [Dehalococcoides ethenogenes 195]
gi|57224735|gb|AAW39792.1| endonuclease III [Dehalococcoides ethenogenes 195]
Length = 218
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A ++++ GD+P ++ ++L LPG+G K A++V++ + V+GI VDTHV R+ RLG
Sbjct: 97 ARAVVSRFGGDVPRNMADMLTLPGVGRKTANVVLHNAFGLVEGIAVDTHVKRLAGRLGLS 156
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ + P + + L +P+ EW + L+ G+ +C +PRC C ++++CP
Sbjct: 157 TN-------TDPVKIEQDLMALIPRSEWGNFSYYLIDHGRAVCDAKKPRCPECVLNDICP 209
Query: 125 SAF 127
SAF
Sbjct: 210 SAF 212
>gi|407461561|ref|YP_006772878.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045183|gb|AFS79936.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Nitrosopumilus koreensis AR1]
Length = 215
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I +KY G +P L+ L+ LPG+G K A+ V+ + I VD HVHRI NR+G
Sbjct: 95 EVAKIIDSKYKGKVPEDLETLVELPGVGRKTANCVLVYAFEK-PAIPVDIHVHRISNRIG 153
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V T +PE+T + L + K+ W+ IN V +GQ IC PI P C +C +
Sbjct: 154 LVD-------TKNPEETEQELMKKIDKKFWIDINDTFVMYGQNICKPISPMCDVCKIKRN 206
Query: 123 C 123
C
Sbjct: 207 C 207
>gi|20092809|ref|NP_618884.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
gi|19918109|gb|AAM07364.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
Length = 256
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 74/126 (58%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + + ++ G++P ++ EL+ LPG+G K A++V+ + ++GI VDTHV R+ R
Sbjct: 132 IKAAAQMIVERFGGEVPKTMKELVTLPGVGRKTANIVLARAFGVIEGIAVDTHVKRVSRR 191
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ + S PE+ + L KE+ I+ L+ G+ +C +PRC +C V
Sbjct: 192 LGFT-------RHSDPEKIEQDLITLARKEDLDSISMTLIYHGRKVCRARKPRCYVCVVK 244
Query: 121 ELCPSA 126
ELCPS+
Sbjct: 245 ELCPSS 250
>gi|269122255|ref|YP_003310432.1| endonuclease III [Sebaldella termitidis ATCC 33386]
gi|268616133|gb|ACZ10501.1| endonuclease III [Sebaldella termitidis ATCC 33386]
Length = 219
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 7/129 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L KY+G++P++++EL L G+G K A++V+ WN +GI VDTHV R+ NR+G+V
Sbjct: 98 LEKYNGEVPNTMEELRGLAGVGRKTANVVLGDIWNIREGIVVDTHVKRLSNRIGFV---- 153
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
K+ +PE + L ++PK+ W + L+ G+ C +P+C +C + E C
Sbjct: 154 ---KSDNPEIIEKELMKFIPKKHWFEYSHYLILHGRDKCIARKPKCEICEIKEYCKYYET 210
Query: 129 DSSSPSSKS 137
+ KS
Sbjct: 211 NLKKNKEKS 219
>gi|374635339|ref|ZP_09706940.1| DNA-(apurinic or apyrimidinic site) lyase [Methanotorris formicicus
Mc-S-70]
gi|373562615|gb|EHP88824.1| DNA-(apurinic or apyrimidinic site) lyase [Methanotorris formicicus
Mc-S-70]
Length = 344
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 75/115 (65%), Gaps = 11/115 (9%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y+G++P+ LDE+L LPG+G K A+LV+ + +++ GICVDTHVHRICNR W
Sbjct: 97 YNGEVPNELDEILKLPGVGRKTANLVITLAFDD-YGICVDTHVHRICNR--WEYVE---- 149
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--SVSELCP 124
T +PE+T L+ LPK+ W IN LLV FG+ +C+P P+C C + E CP
Sbjct: 150 -TETPEETEMELRKKLPKKYWKIINNLLVVFGREVCSPT-PKCRKCFEEIRERCP 202
>gi|452209474|ref|YP_007489588.1| Endonuclease III [Methanosarcina mazei Tuc01]
gi|452099376|gb|AGF96316.1| Endonuclease III [Methanosarcina mazei Tuc01]
Length = 234
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + + Y G++P +++EL+ LPG+G K A++V+ + ++GI VDTHV R+ R
Sbjct: 110 IKAAAQLIIENYGGEVPQTMEELVTLPGVGRKTANIVLARAFGIIEGIAVDTHVKRVSGR 169
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + S P + + L KE+ I+ L+ G+ +C +PRC +C V
Sbjct: 170 LGLT-------RNSDPVKIEQDLMSLARKEDLDSISMTLIHHGRKVCQARKPRCSICVVK 222
Query: 121 ELCPSAF 127
ELCPS+
Sbjct: 223 ELCPSSI 229
>gi|338532530|ref|YP_004665864.1| base excision DNA repair protein [Myxococcus fulvus HW-1]
gi|337258626|gb|AEI64786.1| base excision DNA repair protein [Myxococcus fulvus HW-1]
Length = 211
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ IA ++ G++P L G+GPK AHL + + + + I VD HVHR+ NR
Sbjct: 88 LHAIATRTRDEFGGELPCDAQVLQSFKGVGPKCAHLALGIACGH-EAISVDIHVHRVTNR 146
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V + +PE T E L+ LP+ WV +N LLV FG+ +CT RPRC C V
Sbjct: 147 WGYV-------RARTPEATLEALEAVLPRAYWVELNRLLVPFGKHVCTGTRPRCSTCPVL 199
Query: 121 ELC 123
C
Sbjct: 200 RFC 202
>gi|257389142|ref|YP_003178915.1| endonuclease III [Halomicrobium mukohataei DSM 12286]
gi|257171449|gb|ACV49208.1| endonuclease III [Halomicrobium mukohataei DSM 12286]
Length = 228
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +YDG +P ++ L LPG+G K A++V+ G + V+GI VDTHV RI RLG +
Sbjct: 101 IMVEEYDGAVPDTMSGLTDLPGVGRKTANVVLQHGHDVVEGIVVDTHVQRITRRLGLTDE 160
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
PE E L +P+ EW LL+ G+ +C P CG C ++++CPS
Sbjct: 161 -------ERPEAIEEDLMPIVPESEWQQFTHLLIDHGRAVCDARNPDCGDCVLADICPSQ 213
Query: 127 FKDSS 131
D
Sbjct: 214 KGDGD 218
>gi|405375604|ref|ZP_11029631.1| Endonuclease III [Chondromyces apiculatus DSM 436]
gi|397086133|gb|EJJ17273.1| Endonuclease III [Myxococcus sp. (contaminant ex DSM 436)]
Length = 215
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L K+ G++P +DEL+ LPG+ K A++V+N +N GI VDTHV R+ RLG
Sbjct: 98 LEKFGGEVPQRIDELVTLPGVARKTANVVLNTAFNIPSGIIVDTHVARVSQRLGLT---- 153
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K PE + L +P+ +W P V G+ CT +P+C C VS +CP
Sbjct: 154 ---KKEKPEAIEDDLMKLVPQSDWTFFGPATVLHGRYTCTAKKPKCNACIVSSICP 206
>gi|363896810|ref|ZP_09323359.1| endonuclease III [Oribacterium sp. ACB7]
gi|361960375|gb|EHL13624.1| endonuclease III [Oribacterium sp. ACB7]
Length = 240
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + + +Y G++P +D L LPG+G K +L++ ++ + I VDTHV RI NR
Sbjct: 99 IKACATVLVEEYGGEVPKDIDSLTALPGVGRKTGNLILGNIFH-IPSIVVDTHVKRISNR 157
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG +S P +T L LP+E W+ N ++ G+T+CT +P+C +C ++
Sbjct: 158 LGLAD-------SSDPTKTEFQLMDVLPEEFWIRWNTHIIALGRTLCTSQKPKCELCYLN 210
Query: 121 ELCPSAFKDSS---SPSSKSRKSA 141
+LCPS D SP+ + ++ A
Sbjct: 211 DLCPSVKGDPETWRSPAERKKEKA 234
>gi|237756075|ref|ZP_04584653.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691768|gb|EEP60798.1| endonuclease III [Sulfurihydrogenibium yellowstonense SS-5]
Length = 209
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + K++G IP +L+EL+ LPG+G K A + V + I VDTHV R+ R
Sbjct: 88 IKECAKAIVEKFNGQIPKTLEELISLPGVGRKTASAFL-VNAYKIPAIVVDTHVKRVAKR 146
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L +Q ++PE+ + L + KE W I+ LV FG+ ICT +P+C C VS
Sbjct: 147 LKITNQ-------TNPEKVEKDLAKFFSKENWAYISNALVLFGRYICTANKPKCKECYVS 199
Query: 121 ELCPSAFKD 129
++CP K+
Sbjct: 200 DICPYEKKN 208
>gi|15668794|ref|NP_247597.1| endonuclease III [Methanocaldococcus jannaschii DSM 2661]
gi|3915935|sp|Q58030.2|Y613_METJA RecName: Full=Putative endonuclease MJ0613
gi|2826298|gb|AAB98606.1| endonuclease III (nth1) [Methanocaldococcus jannaschii DSM 2661]
Length = 344
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 72/115 (62%), Gaps = 11/115 (9%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y+G +P SL+ELL LPG+G K A+LV+ + +N GICVDTHVHRICNR V
Sbjct: 97 YNGKVPDSLEELLKLPGVGRKTANLVITLAFNK-DGICVDTHVHRICNRWEIVD------ 149
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--SVSELCP 124
T +PE+T L+ LPK+ W IN LLV FG+ IC+ + +C C + E CP
Sbjct: 150 -TETPEETEFELRKKLPKKYWKVINNLLVVFGREICSS-KSKCDKCFKEIKEKCP 202
>gi|88602341|ref|YP_502519.1| endonuclease III [Methanospirillum hungatei JF-1]
gi|88187803|gb|ABD40800.1| DNA-(apurinic or apyrimidinic site) lyase [Methanospirillum
hungatei JF-1]
Length = 215
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + ++DG +P +D+L+ LPG+G K A++V++ ++ GI VDTHV R+ RLG +
Sbjct: 98 MVMKEFDGRVPDEMDDLVRLPGVGRKTANIVLDHAFSKTVGIAVDTHVRRVSMRLGLTDE 157
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
S P++ L PKE W IN L + G+ +CT P C C++++LC A
Sbjct: 158 -------SDPDRIEMDLVRVFPKEFWAEINGLFILHGRRVCTARHPACDNCNLADLCRYA 210
>gi|2127882|pir||E64376 endonuclease III - Methanococcus jannaschii
Length = 353
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 72/115 (62%), Gaps = 11/115 (9%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y+G +P SL+ELL LPG+G K A+LV+ + +N GICVDTHVHRICNR V
Sbjct: 106 YNGKVPDSLEELLKLPGVGRKTANLVITLAFNK-DGICVDTHVHRICNRWEIVD------ 158
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--SVSELCP 124
T +PE+T L+ LPK+ W IN LLV FG+ IC+ + +C C + E CP
Sbjct: 159 -TETPEETEFELRKKLPKKYWKVINNLLVVFGREICSS-KSKCDKCFKEIKEKCP 211
>gi|403744726|ref|ZP_10953877.1| endonuclease III [Alicyclobacillus hesperidum URH17-3-68]
gi|403121904|gb|EJY56163.1| endonuclease III [Alicyclobacillus hesperidum URH17-3-68]
Length = 236
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 8/138 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A I L KY G++P + ++L+ LPG+G K A++V++ + + VDTHV R+ NR+G V
Sbjct: 106 ARILLEKYGGEVPKNREQLVELPGVGRKTANVVLSNAFG-IPAFAVDTHVQRVTNRIGIV 164
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K+ P +T E LP+E W + L + G+ IC +P+C +C VSELC
Sbjct: 165 -------KSDDPLKTEEQACRKLPREMWTQAHHLFIHHGRQICVARKPKCDICPVSELCH 217
Query: 125 SAFKDSSSPSSKSRKSAQ 142
A + + R+ A+
Sbjct: 218 YAREQVRLAAGNQRRKAE 235
>gi|158337187|ref|YP_001518362.1| endonuclease III [Acaryochloris marina MBIC11017]
gi|158307428|gb|ABW29045.1| endonuclease III [Acaryochloris marina MBIC11017]
Length = 224
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+DG +P+ +D LL LPG+ K A++V+ G+ G+ VDTHV R+ NRLG
Sbjct: 105 FDGQVPNQMDLLLTLPGVARKTANVVLAHGYGINMGVTVDTHVKRLSNRLGLT------- 157
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
+ P + + L LP+E+W + L+ G+ +C+ +P C CS+++LCPSA K +
Sbjct: 158 RHQDPVKIEQDLMKLLPQEDWENWSIRLIYHGRAVCSARKPTCDRCSLTDLCPSAGKVTP 217
Query: 132 SPSSKSR 138
+ S+KS+
Sbjct: 218 ARSAKSQ 224
>gi|386874791|ref|ZP_10117017.1| putative endonuclease III [Candidatus Nitrosopumilus salaria BD31]
gi|386807414|gb|EIJ66807.1| putative endonuclease III [Candidatus Nitrosopumilus salaria BD31]
Length = 218
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A I TKY G +P L L+ LPG+G K A+ V+ + I VD HVHRI NRLG
Sbjct: 97 EVAKIIHTKYKGKVPDDLPTLIELPGVGRKTANCVLVYAFEK-PAIPVDIHVHRISNRLG 155
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
V T +PE+T + L + K+ W+ IN V +GQ IC PI P C +C +
Sbjct: 156 LVD-------TRNPEETEQELMKKIQKKYWIDINDTFVMYGQNICKPISPMCDVCKI 205
>gi|448688496|ref|ZP_21694298.1| endonuclease III [Haloarcula japonica DSM 6131]
gi|445779162|gb|EMA30099.1| endonuclease III [Haloarcula japonica DSM 6131]
Length = 227
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ I I + ++DG++P ++ L LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 LQGIGEILIEEHDGEVPDTMSALTDLPGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P+ EW LL+ G+ +C CG C +S
Sbjct: 155 LGLTEK-------ERPEAIEQDLLDVVPESEWQQFTHLLIDHGRAVCGARSADCGACVLS 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSE 218
>gi|435852528|ref|YP_007314114.1| endonuclease III [Methanomethylovorans hollandica DSM 15978]
gi|433663158|gb|AGB50584.1| endonuclease III [Methanomethylovorans hollandica DSM 15978]
Length = 217
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A I LT + G +P ++++LL LPG+G K A++V++ + ++GI VDTHV R+ NRLG+
Sbjct: 101 ARIMLTDFGGKVPDTMEDLLQLPGVGRKTANIVLSRAFGKIEGIAVDTHVKRLSNRLGFT 160
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
PE+ + L +E+ ++ L+ G+ +C P+C C V ELCP
Sbjct: 161 QH-------EDPEKIEKDLMRIAKREDLETLSMTLILHGRNVCMARNPKCVECVVKELCP 213
Query: 125 SA 126
S+
Sbjct: 214 SS 215
>gi|257064026|ref|YP_003143698.1| endonuclease III [Slackia heliotrinireducens DSM 20476]
gi|256791679|gb|ACV22349.1| endonuclease III [Slackia heliotrinireducens DSM 20476]
Length = 210
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ Y G+IP S++ L LPG+G K A++VM + N QGI VDTHV RI +RLG+ +
Sbjct: 96 VADYGGEIPESMEGLQSLPGVGRKTANVVMCQAFRNAQGIAVDTHVFRIAHRLGFAT--- 152
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ +P++ L P+ +W+ IN V FG+ C+ P+C C + +LCP
Sbjct: 153 --RNDDTPDKVEAKLLKVYPQTDWLYINHQWVHFGREFCSARNPKCLTCPIHDLCP 206
>gi|48477970|ref|YP_023676.1| endonuclease III [Picrophilus torridus DSM 9790]
gi|48430618|gb|AAT43483.1| endonuclease III [Picrophilus torridus DSM 9790]
Length = 215
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 8/119 (6%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A L Y+G++P + +EL+ + G+G K A++V+ +N I VDTHVHRI NR+G+V
Sbjct: 89 AKYILKNYNGNVPDTYEELMKIKGVGTKTANIVLTQSFNK-PAIPVDTHVHRIVNRIGFV 147
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ T +PE+T L+ +P E + NP+LV FG+ IC P+ P+C MC V + C
Sbjct: 148 N-------TRTPEETETELKKIIPLEYQIEFNPVLVEFGKNICKPVSPKCDMCLVRDCC 199
>gi|21226997|ref|NP_632919.1| endonuclease III [Methanosarcina mazei Go1]
gi|20905314|gb|AAM30591.1| Endonuclease III [Methanosarcina mazei Go1]
Length = 234
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + + Y G++P +++EL+ LPG+G K A++V+ + ++GI VDTHV R+ R
Sbjct: 110 IKAAAQLIIENYGGEVPQTMEELVTLPGVGRKTANIVLARAFGIIEGIAVDTHVKRVSGR 169
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + S P + + L KE+ I+ L+ G+ +C +PRC +C V
Sbjct: 170 LGLT-------RNSDPVKIEQDLISLARKEDLDSISMTLIYHGRKVCQARKPRCSICVVK 222
Query: 121 ELCPSAF 127
ELCPS+
Sbjct: 223 ELCPSSI 229
>gi|383458979|ref|YP_005372968.1| base excision DNA repair protein [Corallococcus coralloides DSM
2259]
gi|380733644|gb|AFE09646.1| base excision DNA repair protein [Corallococcus coralloides DSM
2259]
Length = 254
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 8/113 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+++G +P+ D L G+GPK AHL + + + + I VD HVHR+ NR G+V
Sbjct: 141 EFNGQLPADPDVLQSFKGVGPKCAHLALGIACGH-EVISVDIHVHRVTNRWGYV------ 193
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K S+PE+T L+ LP+ WV +N LLV FG+ +CT RP+C C V C
Sbjct: 194 -KASTPERTLAALEAVLPRPYWVELNRLLVPFGKHVCTGTRPKCSTCPVLPYC 245
>gi|406835463|ref|ZP_11095057.1| endonuclease III [Schlesneria paludicola DSM 18645]
Length = 225
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
KY+G++P +L+EL+ LPG+G K A++V+ + G+ VDTHV R+ N LG +
Sbjct: 110 KYEGELPQTLEELVALPGVGRKTANVVLGSAFGITSGVVVDTHVKRLTNLLGLTT----- 164
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+++PEQ L LP EEW+ + L+ G+ IC RP+C C + LCP
Sbjct: 165 --SNNPEQIERDLMELLPPEEWINFSHRLIHHGRQICIARRPKCLECPLRPLCP 216
>gi|338534342|ref|YP_004667676.1| endonuclease III [Myxococcus fulvus HW-1]
gi|337260438|gb|AEI66598.1| endonuclease III [Myxococcus fulvus HW-1]
Length = 210
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L K+ G++P +LD L+ LPG+ K A++V+N +N GI VDTHV R+ RLG
Sbjct: 98 LDKFGGEVPRTLDALVTLPGVARKTANVVLNTAFNLPSGIIVDTHVARVSQRLGLT---- 153
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K PE E L +P+E+W P V G+ CT +P+C C + + CP
Sbjct: 154 ---KKDKPEAIEEDLMKLVPQEQWTFFGPATVLHGRYTCTAKKPKCETCIIRDACP 206
>gi|222479385|ref|YP_002565622.1| endonuclease III [Halorubrum lacusprofundi ATCC 49239]
gi|222452287|gb|ACM56552.1| endonuclease III [Halorubrum lacusprofundi ATCC 49239]
Length = 227
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV RI RL +
Sbjct: 105 QHDGEVPDTMSELTELAGVGRKTANVVLQHGHDVVEGIVVDTHVQRITRRLAITEE---- 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKD 129
SP++ + L +P+E+W L++ G+ CT I P CG C ++++CPS D
Sbjct: 161 ---ESPKKIEQDLLDVVPEEDWQQFTHLMIDHGRATCTAINPDCGDCVLADVCPSEKAD 216
>gi|344211668|ref|YP_004795988.1| endonuclease III [Haloarcula hispanica ATCC 33960]
gi|343783023|gb|AEM57000.1| endonuclease III [Haloarcula hispanica ATCC 33960]
Length = 227
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ I I ++DG++P ++ L LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 LQGIGEILAEEHDGEVPDTMSALTDLPGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P +EW LL+ G+ +C CG C ++
Sbjct: 155 LGLTEEE-------RPEAIEQDLLDVVPSDEWQQFTHLLIDHGRAVCGARSAECGACVLA 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSD 218
>gi|257125212|ref|YP_003163326.1| endonuclease III [Leptotrichia buccalis C-1013-b]
gi|257049151|gb|ACV38335.1| endonuclease III [Leptotrichia buccalis C-1013-b]
Length = 219
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + L KY IP L+EL+ LPG+G K A++V+ WN +GI VDTHV R+ NR+G+V
Sbjct: 94 AEMMLDKYKDIIPKKLEELIELPGVGRKTANVVLGELWNIREGIVVDTHVKRLSNRIGFV 153
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K +PE L ++PK+ W + L+ G+ C +P+C +C + + C
Sbjct: 154 -------KNDNPEIIERELMKFIPKKYWFVYSHYLILHGRDKCIARKPKCEICEIRDYC 205
>gi|91773087|ref|YP_565779.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Methanococcoides burtonii DSM 6242]
gi|91712102|gb|ABE52029.1| Endonuclease III [Methanococcoides burtonii DSM 6242]
Length = 204
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 77/122 (63%), Gaps = 8/122 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ + L +YDG +P ++EL+ LPG+G K A+ V+ ++ I VDTHVHRI NR+G
Sbjct: 88 EISRMLLDEYDGIVPDDINELVKLPGVGRKTANCVLTYAFDK-DAIAVDTHVHRISNRMG 146
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V KT++PE+T L + KE W IN L+V FG++ C P+ P+C C ++++
Sbjct: 147 LV-------KTTTPEETEIELGKVVEKEMWKDINGLMVLFGKSTCRPVSPKCDECIMNDI 199
Query: 123 CP 124
CP
Sbjct: 200 CP 201
>gi|433637776|ref|YP_007283536.1| endonuclease III [Halovivax ruber XH-70]
gi|433289580|gb|AGB15403.1| endonuclease III [Halovivax ruber XH-70]
Length = 227
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ + + ++DG++P ++DEL LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IREACELIVEEHDGEVPDTMDELTELPGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P+ WV LL+ G+ CT P C C ++
Sbjct: 155 LGITEE-------ERPEAIEQDLLDIVPEGYWVQFTHLLIDHGRATCTARNPDCESCVLA 207
Query: 121 ELCPSAFKDSS 131
++CPS D
Sbjct: 208 DICPSEKGDGD 218
>gi|149174185|ref|ZP_01852813.1| endonuclease III [Planctomyces maris DSM 8797]
gi|148847165|gb|EDL61500.1| endonuclease III [Planctomyces maris DSM 8797]
Length = 240
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K+A +Y G+IP +L EL+ LPG+G K A++V+ + G+ VDTHV RICN
Sbjct: 115 IRKMALAVTEQYAGEIPRTLKELVALPGVGRKTANVVLGTAFGIPSGVVVDTHVKRICNI 174
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G + + +PE L LPK+EW+ + ++ G+ C +PRC CS+
Sbjct: 175 FGLTT-------SKNPEIIERDLMEVLPKKEWIAFSHRVILHGRATCVARKPRCTECSLL 227
Query: 121 ELCP 124
++CP
Sbjct: 228 KICP 231
>gi|406970685|gb|EKD94978.1| Endonuclease III (DNA-(Apurinic or apyrimidinic site) lyase)
[uncultured bacterium]
Length = 211
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A L+ Y+G +P + +L+ LPG+ K A+++M W +GI VDTHV R+ RLG
Sbjct: 94 ARTVLSLYNGVLPHDMLQLMKLPGVARKSANVIMQELWGIAEGIVVDTHVSRVSARLGLT 153
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
SQ + P++ E L LPK+ W + V G+ IC +P+CG C ++++CP
Sbjct: 154 SQ-------TEPKKIEEDLMSLLPKKYWRNFSGSAVLHGRYICIARKPKCGECVLNKICP 206
Query: 125 SAFK 128
SA+K
Sbjct: 207 SAYK 210
>gi|335046189|ref|ZP_08539212.1| endonuclease III [Oribacterium sp. oral taxon 108 str. F0425]
gi|333759975|gb|EGL37532.1| endonuclease III [Oribacterium sp. oral taxon 108 str. F0425]
Length = 240
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 8/143 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + +Y G++P +D L LPG+G K +L++ ++ + I VDTHV RI NR
Sbjct: 99 IKACAAALVEEYGGEVPKDIDSLTALPGVGRKTGNLILGNIFH-IPSIVVDTHVKRISNR 157
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG +S P +T L LP+E W+ N ++ G+T+CT +P+C +C ++
Sbjct: 158 LGLAD-------SSDPTKTEFQLMEVLPEEFWIRWNTHIIALGRTLCTSQKPKCELCYLN 210
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
+LCPS D + S + + +K
Sbjct: 211 DLCPSVKGDPETWRSPAERKKEK 233
>gi|193083940|gb|ACF09617.1| endonuclease III [uncultured marine crenarchaeote AD1000-325-A12]
Length = 212
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 68/115 (59%), Gaps = 7/115 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y+ +P ++++LL L G+G K A++V++VG+N GI VDTHV R+ NRL
Sbjct: 99 YNSKVPDNMEDLLTLDGVGRKTANIVLSVGFNKNVGIAVDTHVIRLSNRLKLT------- 151
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K ++PE+ L LPKE W + LL+ G+ IC +P C C +++LCP A
Sbjct: 152 KNTNPEKIEIDLIKILPKELWNKFSILLILHGRNICQAKKPDCSNCVLNDLCPYA 206
>gi|410670967|ref|YP_006923338.1| endonuclease III [Methanolobus psychrophilus R15]
gi|409170095|gb|AFV23970.1| endonuclease III [Methanolobus psychrophilus R15]
Length = 219
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A I L++++G +P +++ LL LPG+G K A++V++ + ++GI VDTHV R+ RLG+
Sbjct: 103 AQIMLSEFNGQVPDTMEGLLKLPGVGRKTANIVLSRAFGRIEGIAVDTHVKRLSRRLGFT 162
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ PE+ L +EE ++ L+ G+++C +P+C +C V+ LCP
Sbjct: 163 -------RHEDPEKIERDLMAIAKREELEALSMTLILHGRSVCVARKPKCEVCVVNRLCP 215
Query: 125 SA 126
S+
Sbjct: 216 SS 217
>gi|73668114|ref|YP_304129.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
gi|72395276|gb|AAZ69549.1| endonuclease III [Methanosarcina barkeri str. Fusaro]
Length = 235
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + + KY+G++P +++EL LPG+G K A++V+ + V+G+ VDTHV R+ R
Sbjct: 110 IKTAAQMIVEKYNGEVPKTMEELTSLPGVGRKTANIVLARAFGVVEGVAVDTHVKRVSRR 169
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG K S P + + + +E+ I+ L+ G+ +C +P+C +C V
Sbjct: 170 LGLT-------KNSDPAKIEQDIVSLARREDLDSISMTLIYHGRKVCQAKKPKCKICIVK 222
Query: 121 ELCPSA 126
+LCPS+
Sbjct: 223 DLCPSS 228
>gi|298241894|ref|ZP_06965701.1| endonuclease III [Ktedonobacter racemifer DSM 44963]
gi|297554948|gb|EFH88812.1| endonuclease III [Ktedonobacter racemifer DSM 44963]
Length = 232
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 76/129 (58%), Gaps = 7/129 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L++Y G++P +++ LL L G+ K A++V+ + V G VDTHV R+ RLGW Q
Sbjct: 111 LSEYHGEVPRTMEGLLSLAGVARKTANVVLGNAFGIVDGFVVDTHVGRLSRRLGWTQQ-- 168
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
++P + + L +P+++W+ ++ LL+ G+ IC +P C C+++ LCPSA
Sbjct: 169 -----TNPVKVEQELMRIIPQQDWLDLSHLLIFHGRAICDARKPLCTQCTLAVLCPSASL 223
Query: 129 DSSSPSSKS 137
+ S S++
Sbjct: 224 PTKSKDSQA 232
>gi|390559245|ref|ZP_10243597.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus
hollandicus Lb]
gi|390174172|emb|CCF82890.1| DNA-(Apurinic or apyrimidinic site) lyase [Nitrolancetus
hollandicus Lb]
Length = 220
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+IA + ++G IP + D L PG+GPK +LV+ + + + I VD HVHR+ NR G
Sbjct: 99 EIAHRAVADFNGCIPCADDVLRSFPGVGPKCTNLVLAIACDQPR-ISVDVHVHRVTNRWG 157
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+V T +PEQT L+ LP WV IN LLV FG+ +CT PRC C V ++
Sbjct: 158 YV-------HTRTPEQTMAALEAKLPPRFWVDINRLLVPFGKHVCTARLPRCSTCPVLDM 210
Query: 123 C 123
C
Sbjct: 211 C 211
>gi|399575291|ref|ZP_10769049.1| endonuclease III [Halogranum salarium B-1]
gi|399239559|gb|EJN60485.1| endonuclease III [Halogranum salarium B-1]
Length = 228
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++DG++P ++ EL L G+G K A++V+ + V+GI VDTHV RI RLG +
Sbjct: 103 IDEHDGEVPDTMKELTDLTGVGRKTANVVLQHAHDVVEGIVVDTHVQRISRRLGITEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
PE + L +P+++W L + G+ CT I P C C + +LCPS+ +
Sbjct: 161 -----EYPENIEQDLMTVVPEDDWQEFTHLFISHGRATCTAINPECSDCVLEDLCPSSKE 215
Query: 129 D 129
D
Sbjct: 216 D 216
>gi|270308206|ref|YP_003330264.1| endonuclease III protein [Dehalococcoides sp. VS]
gi|270154098|gb|ACZ61936.1| endonuclease III protein [Dehalococcoides sp. VS]
Length = 225
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 8 CLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQP 67
++++ G +PS++ ++L LPG+G K A++V++ + V+GI VDTHV R+ RLG +
Sbjct: 107 VVSRFGGVVPSNMADMLTLPGVGRKTANVVLHNAFGLVEGIAVDTHVKRLSERLGLTNN- 165
Query: 68 GRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAF 127
+ P + + L ++P+ EW + L+ G+ +C +PRC C + ++CPSA+
Sbjct: 166 ------TDPVKIEQDLMEFIPRNEWGNFSYYLIDHGRAVCDAKKPRCEECVLKDICPSAY 219
>gi|303232986|ref|ZP_07319666.1| endonuclease III [Atopobium vaginae PB189-T1-4]
gi|302480913|gb|EFL43993.1| endonuclease III [Atopobium vaginae PB189-T1-4]
Length = 250
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + + G +P ++ EL LPG+G K A++VMN +NN +GI VDTHV RI RL +
Sbjct: 130 ARMIVNDFGGTVPRTMAELTRLPGVGRKTANIVMNKAFNNAEGIAVDTHVFRIATRLEFT 189
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
++P + L +P+E W +N + FG+ +C +P C C +LCP
Sbjct: 190 -------HAATPLAAEQDLLAIIPRELWCNVNEEWIHFGREVCPARKPHCDTCFERDLCP 242
Query: 125 SA 126
A
Sbjct: 243 FA 244
>gi|406875070|gb|EKD24905.1| hypothetical protein ACD_80C00145G0039 [uncultured bacterium (gcode
4)]
Length = 231
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
KY IP +L+EL+ PGIG K A +V +V ++ + I VDTH+HR+ NRLG V
Sbjct: 110 KYKNWIPDTLEELMQFPGIGIKTAKVVAHVLYDKL-FIAVDTHIHRVSNRLGLV------ 162
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
KT+SPE+T E+L+ +P + LV FG+ CT P+C +C + ++C + +
Sbjct: 163 -KTTSPEKTSELLEKRIPDNYKHLAHHALVLFGRYYCTARNPKCEICKLKQIC--LYYKA 219
Query: 131 SSPSSKSRKSAQ 142
+ +SK+++S +
Sbjct: 220 NVIASKAKQSKK 231
>gi|339442257|ref|YP_004708262.1| hypothetical protein CXIVA_11940 [Clostridium sp. SY8519]
gi|338901658|dbj|BAK47160.1| hypothetical protein CXIVA_11940 [Clostridium sp. SY8519]
Length = 214
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
++ + G++PS+L++L+ LPG+G K A+++ + + I VDTHV RI NRLG+
Sbjct: 99 ISDFGGEVPSALEDLISLPGVGRKTANVIRGNIYKD-PSIVVDTHVKRISNRLGFT---- 153
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
K PE+ L LPK+ W+ N ++ G+TICT P+CG C +S+LC + K
Sbjct: 154 ---KEQDPEKIEYDLMKKLPKDHWISYNMQIITLGRTICTARSPKCGECFLSDLCKAEDK 210
>gi|218782481|ref|YP_002433799.1| endonuclease III [Desulfatibacillum alkenivorans AK-01]
gi|218763865|gb|ACL06331.1| endonuclease III [Desulfatibacillum alkenivorans AK-01]
Length = 210
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + K+ G +P ++ LL LPG+G K A++V+N + + GI VDTHV RI R
Sbjct: 91 VKECAAALMEKHGGVVPRDMESLLALPGVGRKTANVVLNAAFE-IPGIVVDTHVQRISQR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ K P + L LPKE W+ + L+ G+ +CT +P+CG C+++
Sbjct: 150 LGFT-------KFKDPVKIEFDLMKLLPKESWIDFSLHLIYHGRAVCTARKPKCGECTLA 202
Query: 121 ELCPSAFK 128
E C A K
Sbjct: 203 EWCKGAGK 210
>gi|227873069|ref|ZP_03991363.1| DNA-(apurinic or apyrimidinic site) lyase [Oribacterium sinus
F0268]
gi|227841050|gb|EEJ51386.1| DNA-(apurinic or apyrimidinic site) lyase [Oribacterium sinus
F0268]
Length = 250
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
MK A + +Y G++P +++ L LPG+G K +L++ ++ + I VDTHV RI NR
Sbjct: 99 MKACAKALVEEYGGEVPRNIEALTGLPGVGRKTGNLILGNIYH-IPSIVVDTHVKRISNR 157
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG P P + L LP+E W+ N ++ G+T+CT P+CG C +
Sbjct: 158 LGLADSP-------DPTKVEFQLMEHLPEEFWIRWNTHIIALGRTLCTSQNPKCGECYLQ 210
Query: 121 ELCPSAFKD 129
+LCPS+ KD
Sbjct: 211 DLCPSSKKD 219
>gi|448446645|ref|ZP_21590867.1| endonuclease III [Halorubrum saccharovorum DSM 1137]
gi|445683789|gb|ELZ36179.1| endonuclease III [Halorubrum saccharovorum DSM 1137]
Length = 227
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
K+DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 105 KHDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE---- 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKD 129
PE + L +P+ +W L++ G+ CT I P CG C ++++CPS D
Sbjct: 161 ---ERPESIEQDLLEVVPESDWQQFTHLMIDHGRATCTAINPDCGDCVLADVCPSEKGD 216
>gi|448501578|ref|ZP_21612280.1| endonuclease III [Halorubrum coriense DSM 10284]
gi|445695009|gb|ELZ47122.1| endonuclease III [Halorubrum coriense DSM 10284]
Length = 227
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 7/121 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 105 EHDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE---- 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
PE + L +P+ +W L++ G+ CT I P C C++++LCPS D+
Sbjct: 161 ---ERPEAIEQDLLDVVPESDWQQFTHLMIDHGRATCTAINPDCDDCALADLCPSEKGDA 217
Query: 131 S 131
+
Sbjct: 218 A 218
>gi|444919356|ref|ZP_21239391.1| Endonuclease III [Cystobacter fuscus DSM 2262]
gi|444708665|gb|ELW49713.1| Endonuclease III [Cystobacter fuscus DSM 2262]
Length = 219
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P SL++L LPG+ K A++V+N +N GI VDTHV R+ RLG
Sbjct: 102 LMDFGGEVPHSLEQLTTLPGVARKTANVVLNTAFNLPSGIIVDTHVVRVSQRLGLT---- 157
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K PE+ + L +PKEEW + P V G+ C +P+C C +++ CP
Sbjct: 158 ---KKKKPEEIEQELMKLVPKEEWTFLGPATVLHGRYTCMARKPKCDACPLADFCP 210
>gi|309810814|ref|ZP_07704615.1| endonuclease III [Dermacoccus sp. Ellin185]
gi|308435120|gb|EFP58951.1| endonuclease III [Dermacoccus sp. Ellin185]
Length = 277
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K++ + ++DG++P LD+L+ LPG+G K A++V+ + V GI VDTH R+ R G
Sbjct: 104 KLSQDIVERFDGEVPGRLDDLVTLPGVGRKTANVVLGNAFG-VPGITVDTHFGRLARRFG 162
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W + + P + + PK++W ++ +++ G+ IC RP CG+C V++
Sbjct: 163 WTT-------SEDPVKVEAEVGALFPKKDWTMLSHVVIFHGRRICHARRPACGVCPVAQW 215
Query: 123 CPSAFKDSSSPSSKSRK 139
CPS F + + +RK
Sbjct: 216 CPS-FGEGEIDADAARK 231
>gi|448713761|ref|ZP_21702046.1| endonuclease III [Halobiforma nitratireducens JCM 10879]
gi|445789169|gb|EMA39860.1| endonuclease III [Halobiforma nitratireducens JCM 10879]
Length = 227
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IKSACEAIVEEHDGEVPDTMDELTDLSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE+ E L +P+ W L + G+ +CT P C C ++
Sbjct: 155 LGLTEE-------KRPERIEEELMEIVPEGYWQQFTHLCIDHGRAVCTARNPDCSDCVLA 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSD 218
>gi|336255233|ref|YP_004598340.1| endonuclease III [Halopiger xanaduensis SH-6]
gi|335339222|gb|AEH38461.1| endonuclease III [Halopiger xanaduensis SH-6]
Length = 227
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K L ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IKNSCETILEEHDGEVPDTMDELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P+ W L + G+ CT P C C ++
Sbjct: 155 LGLTEE-------ERPEAIEQDLMTIVPEGYWQQFTHLCIDHGRATCTARNPDCADCVLA 207
Query: 121 ELCPSAFKDSS 131
++CPSA DS
Sbjct: 208 DICPSAKGDSE 218
>gi|284039058|ref|YP_003388988.1| DNA-(apurinic or apyrimidinic site) lyase [Spirosoma linguale DSM
74]
gi|283818351|gb|ADB40189.1| DNA-(apurinic or apyrimidinic site) lyase [Spirosoma linguale DSM
74]
Length = 220
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
M IA + +++G++P+ L L G+GPK A+L + V I VD HVHR+ NR
Sbjct: 97 MLGIAGRIVNEFNGELPADYATLTSLKGVGPKCANLALGVATGQA-AISVDVHVHRVVNR 155
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V T PEQT +VL+ +P E+WV IN LL+ FG+ ICT P C C V
Sbjct: 156 WGYV-------HTKQPEQTLKVLETQVPHEQWVDINRLLMPFGKHICTGTLPHCSTCPVL 208
Query: 121 ELC 123
C
Sbjct: 209 PWC 211
>gi|406977218|gb|EKD99414.1| Endonuclease III (DNA-(Apurinic or apyrimidinic site) lyase)
[uncultured bacterium]
Length = 211
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K + L+ + G++P ++ EL+ +PG+ K A++++N W+ +GI VDTH+ R+ NRLG
Sbjct: 92 KAGKVMLSGFGGELPKTIPELIKIPGVARKTANVILNEVWDIAEGIVVDTHITRVSNRLG 151
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+ + + L LPKE W + +V G+ ICT + +C C +++L
Sbjct: 152 LTTN-------QDAVKIEKDLMALLPKEYWRNYSGAVVLLGRYICTAKKVKCEECPLNKL 204
Query: 123 CPSAFK 128
CPSAFK
Sbjct: 205 CPSAFK 210
>gi|448328069|ref|ZP_21517385.1| endonuclease III [Natrinema versiforme JCM 10478]
gi|445616664|gb|ELY70284.1| endonuclease III [Natrinema versiforme JCM 10478]
Length = 227
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L +DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEDHDGEVPDTMDELTELSGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
PE+ + L +P+++W L + G+ CT P C C ++++CPS
Sbjct: 161 -----EYPERIEQDLIEIVPEDDWQQFTHLCIDHGRATCTAQNPDCADCVLADICPSEKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSE 218
>gi|448343824|ref|ZP_21532741.1| endonuclease III [Natrinema gari JCM 14663]
gi|445621907|gb|ELY75372.1| endonuclease III [Natrinema gari JCM 14663]
Length = 227
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L +DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEDHDGEVPDTMAELTDLSGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
P++ E L +P++ W L + G+ CT P CG C +++LCPS+
Sbjct: 161 -----EYPDRIEEDLMEIVPEDGWQEFTHLCIDHGRATCTAQNPDCGDCVLADLCPSSKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSE 218
>gi|260891368|ref|ZP_05902631.1| endonuclease III [Leptotrichia hofstadii F0254]
gi|260858751|gb|EEX73251.1| endonuclease III [Leptotrichia hofstadii F0254]
Length = 219
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 7/119 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + L KY+ IP L++L+ LPG+G K A++V+ WN +GI VDTHV R+ NR+G+V
Sbjct: 94 AEMMLEKYNDVIPKDLEKLVELPGVGRKTANVVLGELWNIREGIVVDTHVKRLSNRIGFV 153
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K +PE L ++PK +W + ++ G+ C +P+C +C + + C
Sbjct: 154 -------KNDNPEIIERELMKFVPKRDWFVYSHYMILHGRDKCIARKPKCEICEIRDYC 205
>gi|448344745|ref|ZP_21533647.1| endonuclease III [Natrinema altunense JCM 12890]
gi|445636851|gb|ELY90008.1| endonuclease III [Natrinema altunense JCM 12890]
Length = 227
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L +DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEDHDGEVPDTMAELTDLSGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
P++ E L +P++ W L + G+ CT P CG C +++ CPSA
Sbjct: 161 -----EYPDRIEEDLMEIVPEDSWQEFTHLCIDHGRATCTAQNPDCGDCVLADRCPSAKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSE 218
>gi|448449361|ref|ZP_21591690.1| endonuclease III [Halorubrum litoreum JCM 13561]
gi|445813452|gb|EMA63430.1| endonuclease III [Halorubrum litoreum JCM 13561]
Length = 227
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 106 HDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE----- 160
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
PE + L +P+ +W L++ G+ CT I P C C+++++CPS DS
Sbjct: 161 --EHPEAIEQDLLEVVPESDWQQFTHLMIDHGRATCTAINPDCADCALADVCPSEKGDSE 218
>gi|357400465|ref|YP_004912390.1| Endonuclease III [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|386356517|ref|YP_006054763.1| endonuclease III [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|337766874|emb|CCB75585.1| Endonuclease III [Streptomyces cattleya NRRL 8057 = DSM 46488]
gi|365807025|gb|AEW95241.1| endonuclease III [Streptomyces cattleya NRRL 8057 = DSM 46488]
Length = 330
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P L++L+ LPG+G K A++V+ + V GI VDTH R+ R GW +
Sbjct: 172 RFGGEVPGRLEDLVTLPGVGRKTANVVLGNAFG-VPGITVDTHFGRLARRFGWTT----- 225
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
+ PE+ E + PK EW ++ L+ G+ +C +P CG C ++ LCPS +
Sbjct: 226 --SEDPEKIEEEVGSLFPKSEWTMLSHRLIFHGRRVCHSRKPACGACPIAPLCPSYGEGE 283
Query: 131 SSPSSKSRK 139
+ P K+RK
Sbjct: 284 TDP-DKARK 291
>gi|452944641|ref|YP_007500806.1| endonuclease III [Hydrogenobaculum sp. HO]
gi|452883059|gb|AGG15763.1| endonuclease III [Hydrogenobaculum sp. HO]
Length = 211
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+IA I + KY+ +P DELL LPG+G K A++V+ + I VD HVHRI R
Sbjct: 90 IKEIATILVDKYNSQVPDEEDELLKLPGVGRKTANMVLANAFRK-PAIAVDRHVHRIVQR 148
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG K P++T E L+ + KE W LL+ + +CT P+C C +
Sbjct: 149 LGL-------DKNKDPDKTTEHLKSIVDKELWTTFYLLLLRHAKEVCTAKNPKCQECVLK 201
Query: 121 ELCPS 125
++C S
Sbjct: 202 DICES 206
>gi|397589414|gb|EJK54652.1| hypothetical protein THAOC_25701, partial [Thalassiosira oceanica]
Length = 470
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + KY GDIP + DE++ L G+GPKMA++V + + G H+H+ N+
Sbjct: 325 IKAAAETLIEKYQGDIPPTADEMMELKGVGPKMAYIVEQIAFGESPGF----HMHKNFNK 380
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTI 106
L WV+ + +PEQTR L+ WLP+E+W +N L VGFGQ +
Sbjct: 381 LNWVN-------SKTPEQTRVQLEGWLPREKWSEVNVLWVGFGQKL 419
>gi|337288175|ref|YP_004627647.1| endonuclease III [Thermodesulfobacterium sp. OPB45]
gi|334901913|gb|AEH22719.1| endonuclease III [Thermodesulfobacterium geofontis OPF15]
Length = 225
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 7/125 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I + KY+G++P +++ELL LPG+ K A++V+ + V+GI VDTHV +I R
Sbjct: 103 IKECCKILVEKYNGEVPKTMEELLELPGVARKTANIVLANAYGIVEGIPVDTHVRKISQR 162
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG VS + PE+ + L +PK++W L+ G+ IC +P+C C +
Sbjct: 163 LGIVS-------SKQPEKMEKELMEIVPKKDWFAFPYLIQAHGRKICLGRKPKCEECILK 215
Query: 121 ELCPS 125
+LC +
Sbjct: 216 DLCNA 220
>gi|448480061|ref|ZP_21604455.1| endonuclease III [Halorubrum arcis JCM 13916]
gi|445822246|gb|EMA72016.1| endonuclease III [Halorubrum arcis JCM 13916]
Length = 227
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 106 HDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE----- 160
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
PE + L +P+ +W L++ G+ CT I P C C+++++CPS DS
Sbjct: 161 --ERPEAIEQDLLEVVPESDWQQFTHLMIDHGRATCTAINPDCADCALADVCPSEKGDSE 218
>gi|301122869|ref|XP_002909161.1| endonuclease III-like, HhH-GPD superfamily base excision DNA repair
enzyme, putative [Phytophthora infestans T30-4]
gi|262099923|gb|EEY57975.1| endonuclease III-like, HhH-GPD superfamily base excision DNA repair
enzyme, putative [Phytophthora infestans T30-4]
Length = 259
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 15 DIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KT 73
DIPS+ +EL+ LPG+GPKMA LVMN W N GICVDTHVHRI NRL WV + K+
Sbjct: 185 DIPSTYEELIALPGVGPKMATLVMNCAWKNTVGICVDTHVHRISNRLKWVKTWNKNNPKS 244
Query: 74 SSPEQTREV 82
PE+TR V
Sbjct: 245 QDPEKTRAV 253
>gi|443312519|ref|ZP_21042136.1| DNA-(apurinic or apyrimidinic site) lyase [Synechocystis sp. PCC
7509]
gi|442777497|gb|ELR87773.1| DNA-(apurinic or apyrimidinic site) lyase [Synechocystis sp. PCC
7509]
Length = 219
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + + +++G +P+S+++LL LPG+ K A++V+ G+N G+ VDTHV R+C+R
Sbjct: 97 IKAACALLVQEFNGQVPASMEQLLKLPGVARKTANVVLAHGYNINAGVTVDTHVKRLCDR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + S P + L LP+ +W + LV +G+ +C P+C +C ++
Sbjct: 157 LGLT-------EYSDPIRIERDLMRLLPQPDWENWSIRLVYYGRAVCKARSPQCSVCILA 209
Query: 121 ELCPSA 126
+LCPSA
Sbjct: 210 DLCPSA 215
>gi|427412433|ref|ZP_18902625.1| endonuclease III [Veillonella ratti ACS-216-V-Col6b]
gi|425716240|gb|EKU79224.1| endonuclease III [Veillonella ratti ACS-216-V-Col6b]
Length = 212
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K + + Y G++PS D+L+ LPG+G K A+++++V ++ I VDTHV R+ NRLG
Sbjct: 93 KTCDLLVNTYGGEVPSEFDKLVQLPGVGRKTANVLISVLFDT-PAIAVDTHVFRVSNRLG 151
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
K +PE+ E L+ +P E+W + L+ G+ IC +P CG C ++ +
Sbjct: 152 LA-------KGKTPEEVEEKLKKAIPMEKWSAAHHWLIWHGRKICKARKPLCGECPLAHI 204
Query: 123 CPSAFKDS 130
CPSA K++
Sbjct: 205 CPSAGKEA 212
>gi|328943407|ref|ZP_08240872.1| endonuclease III [Atopobium vaginae DSM 15829]
gi|327491376|gb|EGF23150.1| endonuclease III [Atopobium vaginae DSM 15829]
Length = 220
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ ++ + G++P +++EL+ LPG+G K A++V+N +N QGI VDTHV RI RL +
Sbjct: 102 MIMSDFAGEVPQTMEELMRLPGVGRKTANIVLNKAFNKTQGIAVDTHVFRISTRLQFT-- 159
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +P + + L LP W +N + FG+ IC P C C LCPS
Sbjct: 160 -----RAKTPLEAEQDLLKLLPPTLWSSVNEEWIHFGREICKAKNPCCETCIARALCPSY 214
Query: 127 FKDS 130
K S
Sbjct: 215 AKFS 218
>gi|448523903|ref|ZP_21619090.1| endonuclease III [Halorubrum distributum JCM 10118]
gi|445700976|gb|ELZ52967.1| endonuclease III [Halorubrum distributum JCM 10118]
Length = 239
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 106 HDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE----- 160
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
PE + L +P+ +W L++ G+ CT I P C C+++++CPS DS
Sbjct: 161 --ERPEAIEQDLLEVVPESDWQQFTHLMIDHGRATCTAINPDCADCALADVCPSEKGDSE 218
>gi|448507103|ref|ZP_21614817.1| endonuclease III, partial [Halorubrum distributum JCM 9100]
gi|445699204|gb|ELZ51237.1| endonuclease III, partial [Halorubrum distributum JCM 9100]
Length = 218
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 106 HDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE----- 160
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
PE + L +P+ +W L++ G+ CT I P C C+++++CPSA
Sbjct: 161 --ERPEAIEQDLLEVVPESDWQQFTHLMIDHGRATCTAINPDCADCALADVCPSA 213
>gi|348675883|gb|EGZ15701.1| hypothetical protein PHYSODRAFT_561415 [Phytophthora sojae]
Length = 275
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 15 DIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KT 73
DIPS+ + L+ LPG+GPKMA LVMN WNN GICVDTHVHRI NRL WV + K+
Sbjct: 200 DIPSTYEGLIALPGVGPKMATLVMNCAWNNTVGICVDTHVHRISNRLKWVKTWNKNNPKS 259
Query: 74 SSPEQTREVLQL 85
PE+TR V ++
Sbjct: 260 QDPEKTRAVHEI 271
>gi|448473406|ref|ZP_21601548.1| endonuclease III [Halorubrum aidingense JCM 13560]
gi|445818918|gb|EMA68767.1| endonuclease III [Halorubrum aidingense JCM 13560]
Length = 227
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
K+DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 105 KHDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE---- 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
SP+ L +P+++W L++ G+ CT I P C C ++++CPS D+
Sbjct: 161 ---QSPKAIERDLLDIVPEDDWQQFTHLMIDHGRATCTAINPDCADCVLADVCPSEKGDA 217
Query: 131 S 131
Sbjct: 218 E 218
>gi|448310828|ref|ZP_21500607.1| endonuclease III [Natronolimnobius innermongolicus JCM 12255]
gi|445607176|gb|ELY61069.1| endonuclease III [Natronolimnobius innermongolicus JCM 12255]
Length = 227
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K L ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IKSSCETILEEHDGEVPDTMDELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P+ W L + G+ CT P C C ++
Sbjct: 155 LGLTEE-------QRPEAIEQELMEIVPEGYWQQFTHLCIDHGRATCTARNPDCSDCVLA 207
Query: 121 ELCPSAFKDSS 131
++CPSA DS
Sbjct: 208 DICPSAKGDSE 218
>gi|319956678|ref|YP_004167941.1| DNA-(apurinic or apyrimidinic site) lyase [Nitratifractor
salsuginis DSM 16511]
gi|319419082|gb|ADV46192.1| DNA-(apurinic or apyrimidinic site) lyase [Nitratifractor
salsuginis DSM 16511]
Length = 218
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L ++ G++PS+L EL + GIGPK A +V+ + VDTHVHRI N LG V
Sbjct: 103 LERHGGEVPSTLSELTAIKGIGPKTAKIVLENAYGQSVA-AVDTHVHRILNLLGVV---- 157
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+T+SPE T + L+ L E +N LLV FGQ IC P P C C + CP A
Sbjct: 158 ---ETASPEATDKALEGLLEPGELKGLNKLLVSFGQAICRPRNPLCSRCPIRSCCPKA 212
>gi|385809949|ref|YP_005846345.1| type III endonuclease [Ignavibacterium album JCM 16511]
gi|383801997|gb|AFH49077.1| Putative type III endonuclease [Ignavibacterium album JCM 16511]
Length = 223
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ K+DG +P+ DEL+ LPG+G K A +V + + I VDTHV R+ N LG+
Sbjct: 107 VEKFDGKVPADFDELVKLPGVGRKTASVVAGNAFG-IPAIAVDTHVKRLSNLLGFAD--- 162
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
T +P++ L+ LPK+ W+ + LL G+ IC RP+C C +++ CPS
Sbjct: 163 ----TDNPDKIEMRLKELLPKDYWILSSHLLATHGRNICIARRPKCEQCVIAKYCPS 215
>gi|166157039|emb|CAO79496.1| Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[uncultured candidate division WWE3 bacterium
EJ0ADIGA11YD11]
Length = 217
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + G +P ++++L+ +PG+ K A+++M W GI VDTHV R+ NRLG
Sbjct: 101 VVTLNFGGVLPRNMEDLMKIPGVARKSANVIMQELWGIADGIVVDTHVKRVSNRLGLT-- 158
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K PE+ + L +PK W + +V G+ ICT P+C C ++E+CPSA
Sbjct: 159 -----KEQDPEKIEKDLMKIIPKRSWRNFSGAMVLHGRYICTAKSPKCEECPLNEICPSA 213
Query: 127 FK 128
FK
Sbjct: 214 FK 215
>gi|448299418|ref|ZP_21489430.1| endonuclease III [Natronorubrum tibetense GA33]
gi|445588008|gb|ELY42257.1| endonuclease III [Natronorubrum tibetense GA33]
Length = 227
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I L ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 101 IILEEHDGEVPDTMDELTELSGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTEE 160
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
PE + L +P+ W L + G+ IC P C C ++++CPS
Sbjct: 161 -------QRPEAIEQELMELVPEGYWQQFTHLCIDHGRAICDARNPDCADCVLADICPSE 213
Query: 127 FKDSS 131
DS
Sbjct: 214 KGDSE 218
>gi|322369514|ref|ZP_08044079.1| endonuclease III [Haladaptatus paucihalophilus DX253]
gi|320551246|gb|EFW92895.1| endonuclease III [Haladaptatus paucihalophilus DX253]
Length = 228
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 IEEHDGEVPDTMSELTDLTGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRRLGLTEEK- 161
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+P++ L ++P+E+W + L + G+ CT P CG C + ++CPS+
Sbjct: 162 ------TPQKIESDLMTFVPEEDWQWLTHLFISHGRATCTARNPDCGDCILEDICPSSKL 215
Query: 129 DSS 131
D+
Sbjct: 216 DND 218
>gi|428769953|ref|YP_007161743.1| DNA-(apurinic or apyrimidinic site) lyase [Cyanobacterium aponinum
PCC 10605]
gi|428684232|gb|AFZ53699.1| endonuclease III [Cyanobacterium aponinum PCC 10605]
Length = 212
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 7/117 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ +DG +P ++ ELL L G+ K A++V+ + ++G+ VDTHV R+ NRLG
Sbjct: 100 VNDFDGKVPQTMTELLTLAGVARKTANVVLAHAFGIIEGVTVDTHVKRLSNRLGLT---- 155
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
K S+P Q + L LP+ EW + ++ G+ +C +PRC C++S LCPS
Sbjct: 156 ---KHSNPIQIEKDLMKLLPQAEWENFSISIIYHGRAVCNARKPRCPECTLSHLCPS 209
>gi|436836314|ref|YP_007321530.1| DNA-(apurinic or apyrimidinic site) lyase [Fibrella aestuarina BUZ
2]
gi|384067727|emb|CCH00937.1| DNA-(apurinic or apyrimidinic site) lyase [Fibrella aestuarina BUZ
2]
Length = 217
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
M IA +T++ G +P D L G+GPK A+L + V I VD HVHR+ NR
Sbjct: 94 MIGIAQRVMTEFSGTLPPDFDVLTSFKGVGPKCANLALGVAAGQA-AISVDIHVHRVTNR 152
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V +T +PEQT VL+ +P +W+ IN LL+ FG+ ICT P C C V
Sbjct: 153 WGFV-------QTKTPEQTLAVLEKQVPVAQWININRLLMPFGKHICTGTLPHCSTCPVL 205
Query: 121 ELC 123
C
Sbjct: 206 AHC 208
>gi|195953854|ref|YP_002122144.1| endonuclease III [Hydrogenobaculum sp. Y04AAS1]
gi|195933466|gb|ACG58166.1| endonuclease III [Hydrogenobaculum sp. Y04AAS1]
Length = 211
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+IA I + KY+ +P DEL+ LPG+G K A++V+ + I VD HVHRI R
Sbjct: 90 IKEIATILVDKYNSKVPDEEDELVKLPGVGKKTANMVLANAFKK-PAIAVDRHVHRIVQR 148
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG K P++T E L+ + KE W LL+ + +CT P+C C +
Sbjct: 149 LGL-------DKNKDPDKTTEHLKSIVDKELWTTFYLLLLRHAKEVCTAKNPKCQECVLK 201
Query: 121 ELCPS 125
++C S
Sbjct: 202 DICES 206
>gi|399924921|ref|ZP_10782279.1| endonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 214
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + + + +++G +P ++ EL+ LPG+G K A++V + + V I VDTHV R+ NR
Sbjct: 93 IKASSKVIIEEFNGQVPKTIKELMTLPGVGKKTANVVASTAFG-VPAIAVDTHVFRVTNR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G+VS+ + E T + LQ + K W + L + G+ CT P C MCS++
Sbjct: 152 IGFVSEK-------NVENTEKALQNKIDKNRWTKAHHLFIFHGRRCCTARNPNCEMCSIN 204
Query: 121 ELC 123
++C
Sbjct: 205 KIC 207
>gi|255305554|ref|ZP_05349726.1| endonuclease III [Clostridium difficile ATCC 43255]
Length = 405
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG++P SL++L+ LPG+G K A +V++ +N+ I VDTHV R+ NR+G V +P
Sbjct: 292 YDGEVPDSLEKLIKLPGVGRKTAGVVLSNAFNH-PAIAVDTHVFRVSNRIGIVDEP---- 346
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P++T L +PKE W + +L+ G+ +C P C C + E C
Sbjct: 347 ---NPQKTEFALMEAIPKERWSHSHHVLIFHGRRMCKARNPECASCPIKEDC 395
>gi|363900267|ref|ZP_09326773.1| endonuclease III [Oribacterium sp. ACB1]
gi|395209856|ref|ZP_10398884.1| endonuclease III [Oribacterium sp. ACB8]
gi|361957121|gb|EHL10433.1| endonuclease III [Oribacterium sp. ACB1]
gi|394704841|gb|EJF12373.1| endonuclease III [Oribacterium sp. ACB8]
Length = 231
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 11/141 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + ++ G++P +D L LPG+G K +L++ ++ + I VDTHV RI NR
Sbjct: 99 IKACAAALVEEHGGEVPKDIDTLTALPGVGRKTGNLILGNIFD-IPSIVVDTHVKRISNR 157
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG +S P +T L LP+E W+ N ++ G+T+CT +P+C +C ++
Sbjct: 158 LGLAD-------SSDPTKTEFQLMEVLPEEFWIRWNTHIIALGRTLCTSQKPKCELCYLN 210
Query: 121 ELCPSAFKDSSS---PSSKSR 138
+LCPS D + PS + R
Sbjct: 211 DLCPSVKGDPETWRAPSERKR 231
>gi|255099671|ref|ZP_05328648.1| endonuclease III [Clostridium difficile QCD-63q42]
Length = 405
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG++P SL++L+ LPG+G K A +V++ +N+ I VDTHV R+ NR+G V +P
Sbjct: 292 YDGEVPDSLEKLIKLPGVGRKTAGVVLSNAFNH-PAIAVDTHVFRVSNRIGIVDEP---- 346
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P++T L +PKE W + +L+ G+ +C P C C + E C
Sbjct: 347 ---NPQKTEFALMEAIPKERWSHSHHVLIFHGRRMCKARNPECASCPIKEDC 395
>gi|427722492|ref|YP_007069769.1| DNA-(apurinic or apyrimidinic site) lyase [Leptolyngbya sp. PCC
7376]
gi|427354212|gb|AFY36935.1| endonuclease III [Leptolyngbya sp. PCC 7376]
Length = 217
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 10/130 (7%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I C +++Y GD+P S++ELL L G+ K A++V+ + + G+ VDTHV R+
Sbjct: 94 KNIKAACERIMSQYGGDVPQSMEELLTLAGVARKTANVVLAHAFGIISGVTVDTHVKRLT 153
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
NRL R K+ +P Q L LP+ EW + ++ G+ +C +P+C C+
Sbjct: 154 NRL-------RLTKSDNPIQIERDLMKLLPQPEWENWSIRIIYHGRAVCNARKPQCEHCA 206
Query: 119 VSELCPSAFK 128
++ LCPSA K
Sbjct: 207 IAHLCPSAGK 216
>gi|448495548|ref|ZP_21610007.1| endonuclease III [Halorubrum californiensis DSM 19288]
gi|445688074|gb|ELZ40346.1| endonuclease III [Halorubrum californiensis DSM 19288]
Length = 227
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +++
Sbjct: 103 VEEHDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLG-ITEAE 161
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
R PE + L +P+ +W L++ G+ CT I P C C ++++CPS
Sbjct: 162 R------PEAIEQDLLDIVPESDWQQFTHLMIDHGRATCTAINPDCADCVLADVCPSEKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSE 218
>gi|149052033|gb|EDM03850.1| nth (endonuclease III)-like 1 (E.coli) (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 120
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 50 VDTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTP 109
VDTHVHRI NRL W K+ T SPE+TR L+ WLP+ W IN LLVGFGQ IC P
Sbjct: 46 VDTHVHRIANRLKWT-----KKMTKSPEETRRNLEEWLPRVLWSEINGLLVGFGQQICLP 100
Query: 110 IRPRCGMCSVSELCPSA 126
+ PRC C LCP+A
Sbjct: 101 VHPRCQACLNKALCPAA 117
>gi|254422830|ref|ZP_05036548.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
PCC 7335]
gi|196190319|gb|EDX85283.1| base excision DNA repair protein, HhH-GPD family [Synechococcus sp.
PCC 7335]
Length = 216
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
IA + YDG +P ++ LL G+GPK AHL + + I VD HVHR+ NR G+
Sbjct: 100 IAQEIVNHYDGILPCDVNTLLAFKGVGPKCAHLTLGIACEQ-PYISVDVHVHRVVNRWGY 158
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V+ T +PE+T + L LPK W+ N LL+ FG+ IC P C C + + C
Sbjct: 159 VA-------TKTPEKTTQALAAKLPKGLWIETNKLLMPFGKQICKGQYPLCTQCPLEDSC 211
Query: 124 P 124
P
Sbjct: 212 P 212
>gi|355571898|ref|ZP_09043106.1| endonuclease III [Methanolinea tarda NOBI-1]
gi|354824994|gb|EHF09229.1| endonuclease III [Methanolinea tarda NOBI-1]
Length = 225
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K + + ++ G +P +D+LL LPG+G K A++V++ + G+ VDTHV R+ RLG
Sbjct: 94 KTSRALIERFGGRVPDRMDDLLTLPGVGRKTANIVLDHAFGIHDGVAVDTHVARLSRRLG 153
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+ S P + L P+ W +N LL+ G+T CT +P C C + L
Sbjct: 154 FSSG-------KDPARIERDLMALFPQSAWGNLNYLLIRHGRTTCTARKPSCTTCPLGSL 206
Query: 123 CPSA 126
CPSA
Sbjct: 207 CPSA 210
>gi|307244080|ref|ZP_07526199.1| endonuclease III [Peptostreptococcus stomatis DSM 17678]
gi|306492604|gb|EFM64638.1| endonuclease III [Peptostreptococcus stomatis DSM 17678]
Length = 212
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I + Y G +P +L++L+ LPG+G K A +V++ + V I VDTHV R+ NR
Sbjct: 93 IKETSSILVDLYGGQVPDNLEDLVKLPGVGRKTAGVVLSNAFG-VPAIAVDTHVFRVSNR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V K ++PE+T L +PK+ W + LL+ G+ +C +P C CS+S
Sbjct: 152 IGIV-------KETTPEKTEFALMKAIPKDRWTHSHHLLIFHGRRVCKARKPECSNCSIS 204
Query: 121 ELC 123
+C
Sbjct: 205 HMC 207
>gi|345303360|ref|YP_004825262.1| endonuclease III [Rhodothermus marinus SG0.5JP17-172]
gi|345112593|gb|AEN73425.1| endonuclease III [Rhodothermus marinus SG0.5JP17-172]
Length = 217
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P S++EL LPG+G K A +V+ + +GI VDTHV R+ RLG S
Sbjct: 103 RHGGEVPRSMEELTALPGVGRKTAAIVLGTAFGIREGIAVDTHVSRVSQRLGLTSH---- 158
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+P++ + L +P+E+W LV G+ +C RPRC C +++LCP
Sbjct: 159 ---KTPDKIEQDLMALVPREDWTWFGHALVLHGRYVCLARRPRCSQCVLADLCP 209
>gi|323310267|gb|EGA63457.1| Ntg1p [Saccharomyces cerevisiae FostersO]
Length = 314
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ D+P++++ELL LPG+GPKMA+L + W ++GICVD HV R+ WV
Sbjct: 218 ILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKLWKWVDX 277
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPIN 96
QK +P+QTR LQ WLPK W IN
Sbjct: 278 ----QKCKTPDQTRTQLQNWLPKGLWTEIN 303
>gi|423091165|ref|ZP_17079423.1| endonuclease III [Clostridium difficile 70-100-2010]
gi|357555447|gb|EHJ37097.1| endonuclease III [Clostridium difficile 70-100-2010]
Length = 350
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG++P SL++L+ LPG+G K A +V++ +N+ I VDTHV R+ NR+G V +P
Sbjct: 237 YDGEVPDSLEKLIKLPGVGRKTAGVVLSNAFNH-PAIAVDTHVFRVSNRIGIVDEP---- 291
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P++T L +PKE W + +L+ G+ +C P C C + E C
Sbjct: 292 ---NPQKTEFALMETIPKERWSHSHHVLIFHGRRMCKARNPECASCPIKEDC 340
>gi|338212879|ref|YP_004656934.1| DNA-(apurinic or apyrimidinic site) lyase [Runella slithyformis DSM
19594]
gi|336306700|gb|AEI49802.1| DNA-(apurinic or apyrimidinic site) lyase [Runella slithyformis DSM
19594]
Length = 220
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
M IA + +YD +P+ D L L G+GPK A+L + V I VD HVHR+ NR
Sbjct: 97 MLGIAKAAVEQYDHRLPADYDSLTALKGVGPKCANLALGVATGQA-AISVDIHVHRVVNR 155
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V + + PE+T + L+ +P +W+ IN LL+ FG+ ICT PRC C V
Sbjct: 156 WGYV-------QANQPEKTLKQLEAKVPVPQWIEINRLLMPFGKHICTGTLPRCSTCPVL 208
Query: 121 ELC 123
C
Sbjct: 209 AWC 211
>gi|134300170|ref|YP_001113666.1| endonuclease III [Desulfotomaculum reducens MI-1]
gi|134052870|gb|ABO50841.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfotomaculum
reducens MI-1]
Length = 211
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + KY+G +P + +EL LPG+G K A++V+ V + VDTHVHR+ +RLG S
Sbjct: 94 ILVEKYNGQVPQAREELEKLPGVGRKTANVVLGVAFGQ-NTFPVDTHVHRLAHRLGLAS- 151
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+PEQ + L +P E W P + ++ G+ IC PRCG C + +LCP A
Sbjct: 152 ------GKTPEQVEKELCQIMPPELWQPCHHWIIQHGRRICDARNPRCGQCCLIDLCPEA 205
Query: 127 FK 128
K
Sbjct: 206 LK 207
>gi|435846406|ref|YP_007308656.1| endonuclease III [Natronococcus occultus SP4]
gi|433672674|gb|AGB36866.1| endonuclease III [Natronococcus occultus SP4]
Length = 227
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEEHDGEVPDTMDELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
PE + L +P+ W L + G+ +CT P C C ++++CPS
Sbjct: 161 -----ERPEAIEQELMEIVPEGYWQQFTHLCIDHGRAVCTARNPDCSDCVLADICPSEKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSD 218
>gi|430743847|ref|YP_007202976.1| endonuclease III [Singulisphaera acidiphila DSM 18658]
gi|430015567|gb|AGA27281.1| endonuclease III [Singulisphaera acidiphila DSM 18658]
Length = 228
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
+A + + + G+IP LD L LPG+G K AH+V+ + G+ VDTHV R+ RLG
Sbjct: 101 MANLVVELHGGEIPRELDALTALPGVGRKTAHVVLGNAFAIASGVVVDTHVKRLSFRLGL 160
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ GR T R+++Q+ +P+++WV + L+ G+ C IRPRC C+++ +C
Sbjct: 161 TT--GRDPITIE----RDLVQI-IPRKQWVDFSHRLIEHGRRTCVAIRPRCDECAIAAIC 213
Query: 124 PSAFKDSSSPSSKSR 138
P K PS R
Sbjct: 214 P---KREVKPSGSKR 225
>gi|384430471|ref|YP_005639831.1| endonuclease III [Thermus thermophilus SG0.5JP17-16]
gi|386361223|ref|YP_006059468.1| endonuclease III [Thermus thermophilus JL-18]
gi|333965939|gb|AEG32704.1| endonuclease III [Thermus thermophilus SG0.5JP17-16]
gi|383510250|gb|AFH39682.1| endonuclease III [Thermus thermophilus JL-18]
Length = 220
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ +Y G++P + L+ LPG+G K A +V+ + V GI VDTHV R+ RL +
Sbjct: 109 VEEYGGEVPKEKEALMRLPGVGWKTATVVLGAAFG-VPGIAVDTHVARLARRLCF----- 162
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
+ +PE+ + L+ PKE+WV ++ LV G+ +CT RPRCG C ++ CPS
Sbjct: 163 --SEAKAPERIGKDLEALFPKEDWVFVHHALVLHGRYVCTARRPRCGACVLAPYCPS 217
>gi|442323962|ref|YP_007363983.1| base excision DNA repair protein [Myxococcus stipitatus DSM 14675]
gi|441491604|gb|AGC48299.1| base excision DNA repair protein [Myxococcus stipitatus DSM 14675]
Length = 233
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 61/110 (55%), Gaps = 8/110 (7%)
Query: 14 GDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKT 73
G +P L G+GPK AHL + + + I VD HVHR+ NR G+V KT
Sbjct: 123 GALPCDAQVLQSFKGVGPKCAHLALGIACGH-DVISVDIHVHRVTNRWGYV-------KT 174
Query: 74 SSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P+ T E L+ LP+ WV IN LLV FG+ +CT RPRC C V + C
Sbjct: 175 RTPQATLEALEARLPRRYWVEINRLLVPFGKHVCTGARPRCSTCPVLKQC 224
>gi|46200194|ref|YP_005861.1| endonuclease III [Thermus thermophilus HB27]
gi|46197822|gb|AAS82234.1| endonuclease III [Thermus thermophilus HB27]
Length = 220
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ +Y G++P + L+ LPG+G K A +V+ + V GI VDTHV R+ RL +
Sbjct: 109 VEEYGGEVPKEKEALMRLPGVGWKTATVVLGAAFG-VPGIAVDTHVARLARRLCF----- 162
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
+ +PE+ + L+ PKE+WV ++ LV G+ +CT RPRCG C ++ CPS
Sbjct: 163 --SEAKAPERIGKDLEALFPKEDWVFVHHALVLHGRYVCTARRPRCGACVLAPYCPS 217
>gi|300706268|ref|XP_002995417.1| hypothetical protein NCER_101695 [Nosema ceranae BRL01]
gi|239604508|gb|EEQ81746.1| hypothetical protein NCER_101695 [Nosema ceranae BRL01]
Length = 264
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 9/112 (8%)
Query: 17 PSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSP 76
PSSL E L + GIG K++ L +N + ++GI VDTHVHRICN L KT +P
Sbjct: 162 PSSLSECLSIKGIGRKISILYLN-KFYRLEGISVDTHVHRICNLLYIC-------KTKTP 213
Query: 77 EQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
++T ++L+ + +EW N +LVG+GQ +C P P+C C V + C S FK
Sbjct: 214 DETSKILETIIDMKEWSEFNSVLVGYGQVLCKPRGPKCTECIVKDNC-SNFK 264
>gi|167758647|ref|ZP_02430774.1| hypothetical protein CLOSCI_00987 [Clostridium scindens ATCC 35704]
gi|167663843|gb|EDS07973.1| endonuclease III [Clostridium scindens ATCC 35704]
Length = 208
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ KYDG++P SL+EL L G+G K A+++ ++ + VDTHV RI NRLG
Sbjct: 97 VDKYDGEVPKSLEELTSLAGVGRKTANVIRGNIYHE-PSVVVDTHVKRISNRLGLT---- 151
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K PE+ + L LPK+ W+ N ++ FG+TICT PRC C + + C
Sbjct: 152 ---KNQDPEKIEQDLMKELPKDHWILYNIQIITFGRTICTARSPRCEECFLQKYC 203
>gi|405363125|ref|ZP_11026123.1| Endonuclease III [Chondromyces apiculatus DSM 436]
gi|397090068|gb|EJJ20954.1| Endonuclease III [Myxococcus sp. (contaminant ex DSM 436)]
Length = 227
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ IA + G +P L G+GPK AHL + + + + I VD HVHR+ NR
Sbjct: 104 LHAIAVRTRDAFGGTLPCDAQVLQSFKGVGPKCAHLALGIACGH-EAISVDIHVHRVTNR 162
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V + +PE T E L+ LP+ WV +N LLV FG+ ICT RP+C C V
Sbjct: 163 WGYV-------QARTPEATMEALEAQLPRAWWVELNRLLVPFGKHICTGTRPKCSTCPVL 215
Query: 121 ELC 123
+ C
Sbjct: 216 DAC 218
>gi|336421321|ref|ZP_08601480.1| endonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
gi|336001507|gb|EGN31644.1| endonuclease III [Lachnospiraceae bacterium 5_1_57FAA]
Length = 208
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ KYDG++P SL+EL L G+G K A+++ ++ + VDTHV RI NRLG
Sbjct: 97 VDKYDGEVPKSLEELTSLAGVGRKTANVIRGNIYHE-PSVVVDTHVKRISNRLGLT---- 151
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K PE+ + L LPK+ W+ N ++ FG+TICT PRC C + + C
Sbjct: 152 ---KNQDPEKIEQDLMKELPKDHWILYNIQIITFGRTICTARSPRCEECFLQKYC 203
>gi|302422168|ref|XP_003008914.1| DNA base excision repair N-glycosylase [Verticillium albo-atrum
VaMs.102]
gi|261352060|gb|EEY14488.1| DNA base excision repair N-glycosylase [Verticillium albo-atrum
VaMs.102]
Length = 317
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+D DIP ++D L LPG+GPKMAHL ++ W +GI VD HVHRI N G
Sbjct: 172 NFDADIPPTIDGLTSLPGVGPKMAHLCLSAAWGRTEGIGVDVHVHRITNMWGVA------ 225
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGF 102
Q+ +P L+ WLP++ W IN LLVG
Sbjct: 226 QRQRAPRPRASPLEAWLPRDRWHEINTLLVGL 257
>gi|78043065|ref|YP_359967.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
gi|77995180|gb|ABB14079.1| endonuclease III [Carboxydothermus hydrogenoformans Z-2901]
Length = 210
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
KIA I +Y G +P S ELL LPG+GPK A +++ VG+N VDTHV R+ RLG
Sbjct: 91 KIAEILDREYHGQVPDSFAELLKLPGVGPKTAEVIVGVGFNK-PSFPVDTHVFRVARRLG 149
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
K +PE L+ P W+ ++ L+ FG+ IC +P C +C E
Sbjct: 150 L-------SKARTPEGVSFDLKKIFPPNSWIDLHHRLIFFGRRICKAQKPSCNICPFPEF 202
Query: 123 C 123
C
Sbjct: 203 C 203
>gi|357390526|ref|YP_004905367.1| putative DNA glycosylase/AP lyase [Kitasatospora setae KM-6054]
gi|311897003|dbj|BAJ29411.1| putative DNA glycosylase/AP lyase [Kitasatospora setae KM-6054]
Length = 271
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+YDG++P +L++L+ LPG+G K A++V+ + GI VDTH R+ R GW +
Sbjct: 117 RYDGEVPRTLEDLVTLPGVGRKTANVVIGNAFGGA-GITVDTHFGRLARRFGWTVE---- 171
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
PE+ + PK EW ++ +V G+ +C +P CG C ++ LCPS
Sbjct: 172 ---EDPEKVEADVMAIFPKSEWTMLSHRVVFHGRRVCHARKPACGACPIAPLCPSYGVGE 228
Query: 131 SSPSSKSRK 139
+ P ++RK
Sbjct: 229 TDP-ERARK 236
>gi|448666799|ref|ZP_21685444.1| endonuclease III [Haloarcula amylolytica JCM 13557]
gi|445771930|gb|EMA22986.1| endonuclease III [Haloarcula amylolytica JCM 13557]
Length = 227
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ I I ++DG++P ++ L LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 LQGIGEILTEEHDGEVPDTMSALTDLPGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P EW LL+ G+ +C C C ++
Sbjct: 155 LGLTEE-------ERPEAIEQDLLDVVPSGEWQQFTHLLIDHGRAVCGARSADCEACVLA 207
Query: 121 ELCPSAFKDSS 131
++CPSA DS
Sbjct: 208 DICPSAKGDSD 218
>gi|254974165|ref|ZP_05270637.1| endonuclease III [Clostridium difficile QCD-66c26]
gi|255091566|ref|ZP_05321044.1| endonuclease III [Clostridium difficile CIP 107932]
gi|255313292|ref|ZP_05354875.1| endonuclease III [Clostridium difficile QCD-76w55]
gi|255515983|ref|ZP_05383659.1| endonuclease III [Clostridium difficile QCD-97b34]
gi|255649074|ref|ZP_05395976.1| endonuclease III [Clostridium difficile QCD-37x79]
gi|306519188|ref|ZP_07405535.1| endonuclease III [Clostridium difficile QCD-32g58]
gi|384359832|ref|YP_006197684.1| endonuclease III [Clostridium difficile BI1]
Length = 350
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG++P SL++L+ LPG+G K A +V++ +N+ I VDTHV R+ NR+G V +P
Sbjct: 237 YDGEVPDSLEKLIKLPGVGRKTAGVVLSNAFNH-PAIAVDTHVFRVSNRIGIVDEP---- 291
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P++T L +PKE W + +L+ G+ +C P C C + E C
Sbjct: 292 ---NPQKTEFALMEAIPKERWSHSHHVLIFHGRRMCKARNPECASCPIKEDC 340
>gi|255654585|ref|ZP_05399994.1| endonuclease III [Clostridium difficile QCD-23m63]
gi|296449359|ref|ZP_06891141.1| endonuclease III [Clostridium difficile NAP08]
gi|296880707|ref|ZP_06904659.1| endonuclease III [Clostridium difficile NAP07]
gi|296261829|gb|EFH08642.1| endonuclease III [Clostridium difficile NAP08]
gi|296428280|gb|EFH14175.1| endonuclease III [Clostridium difficile NAP07]
Length = 285
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG++P SL++L+ LPG+G K A +V++ +N+ I VDTHV R+ NR+G V +P
Sbjct: 172 YDGEVPDSLEKLIKLPGVGRKTAGVVLSNAFNH-PAIAVDTHVFRVSNRIGIVDEP---- 226
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P++T L +PKE W + +L+ G+ +C P C C + E C
Sbjct: 227 ---NPQKTEFALMEAIPKERWSHSHHVLIFHGRRMCKARNPECASCPIKEDC 275
>gi|108759213|ref|YP_634549.1| base excision DNA repair protein [Myxococcus xanthus DK 1622]
gi|108463093|gb|ABF88278.1| base excision DNA repair protein, HhH-GPD family [Myxococcus
xanthus DK 1622]
Length = 240
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ IA ++ G +P L G+GPK AHL + + + + I VD HVHR+ NR
Sbjct: 117 LHAIATRTRDEFGGALPCDAQVLQSFKGVGPKCAHLALGIACGH-EAISVDIHVHRVTNR 175
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V + +PE T E L+ LP+ WV +N LLV FG+ +CT RP+C C V
Sbjct: 176 WGYV-------QARTPEATMEALEAVLPRAWWVELNRLLVPFGKHVCTGTRPKCSTCPVL 228
Query: 121 ELC 123
C
Sbjct: 229 SFC 231
>gi|428774598|ref|YP_007166386.1| DNA-(apurinic or apyrimidinic site) lyase [Cyanobacterium stanieri
PCC 7202]
gi|428688877|gb|AFZ48737.1| endonuclease III [Cyanobacterium stanieri PCC 7202]
Length = 237
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 2 KKIAPICLT---KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I CL +++G++P ++ ELL LPG+ K A++V+ + ++G+ VDTHV R+
Sbjct: 107 KNIQGACLKIVQEFNGEVPQTMKELLTLPGVARKTANVVLAHAFGIIEGVTVDTHVKRLS 166
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
NRLG K S P Q + L LP+ EW + ++ G+ +C +P+C MC
Sbjct: 167 NRLGLT-------KNSQPVQIEKDLMKLLPQPEWENFSISIIYHGRAVCNARKPQCDMCQ 219
Query: 119 VSELCPSAFKDSSSPSSK 136
+ LC K S K
Sbjct: 220 LVHLCSDYKKTQKKVSQK 237
>gi|153815003|ref|ZP_01967671.1| hypothetical protein RUMTOR_01218 [Ruminococcus torques ATCC 27756]
gi|317501555|ref|ZP_07959751.1| endonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088583|ref|ZP_08337494.1| endonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440472|ref|ZP_08620059.1| endonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
gi|145847571|gb|EDK24489.1| endonuclease III [Ruminococcus torques ATCC 27756]
gi|316897066|gb|EFV19141.1| endonuclease III [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407540|gb|EGG87040.1| endonuclease III [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012917|gb|EGN42808.1| endonuclease III [Lachnospiraceae bacterium 1_1_57FAA]
Length = 207
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 8/113 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
K+ G++P SL++L L G+G K A+++ +++ + VDTHV RI NRLG+ Q
Sbjct: 99 KFGGEVPRSLEDLTSLAGVGRKTANVIRGNIYHDA-SVVVDTHVKRISNRLGFTKQ---- 153
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
S PE+ + L LPK+ W+ N ++ FG++ICT P+CG C + + C
Sbjct: 154 ---SDPEKIEQDLMKELPKDHWILYNIQIITFGRSICTARNPKCGECFLKKYC 203
>gi|448355817|ref|ZP_21544566.1| endonuclease III [Natrialba hulunbeirensis JCM 10989]
gi|445634525|gb|ELY87704.1| endonuclease III [Natrialba hulunbeirensis JCM 10989]
Length = 227
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I L ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IKDSCEIILEEHDGEVPDTMDELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P W L + G+ CT P C C ++
Sbjct: 155 LGLTEE-------EYPEPIEQELMELVPDGYWQQFTHLCIDHGRATCTARNPDCSDCVLA 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSE 218
>gi|294495039|ref|YP_003541532.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Methanohalophilus mahii DSM 5219]
gi|292666038|gb|ADE35887.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Methanohalophilus mahii DSM 5219]
Length = 212
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 7/127 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A + + +DG++PS++++LL LPG+ K A++V+ G+ GI VDTHV R+ R
Sbjct: 92 LQQSARVIIEDFDGEVPSTMEDLLKLPGVARKTANIVLARGFGVKAGIAVDTHVKRLATR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ P + L + + EW + L+ G+ IC +P CG C V+
Sbjct: 152 LGFTVN-------KDPVKIERDLMELVDRNEWDDFSLTLILHGRNICFARKPACGKCVVN 204
Query: 121 ELCPSAF 127
LCPS+
Sbjct: 205 HLCPSSL 211
>gi|220903480|ref|YP_002478792.1| endonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
gi|219867779|gb|ACL48114.1| endonuclease III [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
Length = 228
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG IP+SL+EL+ LPG+ K A++V+ + +G+ VDTHV RI RLG
Sbjct: 105 YDGRIPNSLEELITLPGVARKTANVVLFGAFGINEGLAVDTHVKRISYRLGLT------- 157
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+++ P L P+EEW +N +V FG+ +C +P CG C ++ CP
Sbjct: 158 ESTDPVVIERDLMALFPREEWGDVNHRMVWFGREVCEARKPLCGQCEMAIFCP 210
>gi|397569794|gb|EJK46969.1| hypothetical protein THAOC_34338 [Thalassiosira oceanica]
Length = 385
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 16/106 (15%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + KY GDIP + DE++ L G+GPKMA++V + + H+H+ N+
Sbjct: 245 IKAAAETLIEKYQGDIPPTADEMMELKGVGPKMAYIVEQIAF---------VHMHKNFNK 295
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTI 106
L WV+ + +PEQTR L+ WLP+E+W +N L VGFGQ +
Sbjct: 296 LNWVN-------SKTPEQTRVQLEGWLPREKWSDVNVLWVGFGQEV 334
>gi|115378817|ref|ZP_01465958.1| endonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|310822146|ref|YP_003954504.1| endonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|115364173|gb|EAU63267.1| endonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|309395218|gb|ADO72677.1| Endonuclease III [Stigmatella aurantiaca DW4/3-1]
Length = 213
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L ++ G++P SL++L+ LPG+ K A++V+N + G+ VDTHV R+ RLG +
Sbjct: 98 LARFGGEVPQSLEQLVTLPGVARKTANVVLNTAFQLPSGVIVDTHVARVSQRLGLTQK-- 155
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
PE + L +P+++W P +V G+ CT +P+CG C + CP
Sbjct: 156 -----KKPEDIEQELMRLVPQDQWTFFGPAMVLHGRYTCTARKPQCGACPMVAFCP 206
>gi|255513579|gb|EET89845.1| endonuclease III [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 221
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + Y G++P +DEL+ LPG+G K A++V++ ++ +GI +DTH + NRLG
Sbjct: 99 AKMIMHLYGGNVPDRMDELVKLPGVGRKTANVVLSEAFSASEGIAIDTHCITVANRLGLA 158
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ + PE+ L PK+EW ++ LL+ G+ CT C C ++++CP
Sbjct: 159 N-------SKDPEKIERKLMEKFPKKEWRNVSNLLIALGRDTCTARIKHCERCVLNDICP 211
Query: 125 SA 126
S+
Sbjct: 212 SS 213
>gi|452850917|ref|YP_007492601.1| Endonuclease III [Desulfovibrio piezophilus]
gi|451894571|emb|CCH47450.1| Endonuclease III [Desulfovibrio piezophilus]
Length = 211
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A +T+Y+G++P S+ EL+ L G+ K A +V++ + +GI VDTHV R+ R
Sbjct: 90 IRAAANRIMTEYNGEVPKSMAELITLGGVARKTASIVLSNAFGINEGIAVDTHVKRLAFR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G QKT P Q + L P+E+W IN LV +G+ +C +P+C C ++
Sbjct: 150 MGLT------QKT-DPIQIEKDLMPLFPREQWGEINHFLVFYGRQVCPARKPKCDECELN 202
Query: 121 ELCP 124
++CP
Sbjct: 203 DICP 206
>gi|448633657|ref|ZP_21674156.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
gi|445750348|gb|EMA01786.1| endonuclease III [Haloarcula vallismortis ATCC 29715]
Length = 227
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ I I ++DG++P ++ L LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 LQGIGEILTEEHDGEVPDTMSALTDLPGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P EW LL+ G+ +C C C ++
Sbjct: 155 LGLTEK-------DRPEAIEQDLLDVVPDSEWQQFTHLLIDHGRAVCGARSADCDACGLA 207
Query: 121 ELCPSAFKDS 130
++CPS DS
Sbjct: 208 DICPSEKGDS 217
>gi|423083243|ref|ZP_17071818.1| endonuclease III [Clostridium difficile 002-P50-2011]
gi|423086615|ref|ZP_17075014.1| endonuclease III [Clostridium difficile 050-P50-2011]
gi|357546324|gb|EHJ28255.1| endonuclease III [Clostridium difficile 050-P50-2011]
gi|357546344|gb|EHJ28274.1| endonuclease III [Clostridium difficile 002-P50-2011]
Length = 350
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG++P SL++L+ LPG+G K A +V++ +N+ I VDTHV R+ NR+G V +P
Sbjct: 237 YDGEVPDSLEKLIKLPGVGRKTAGVVLSNAFNH-PAIAVDTHVFRVSNRIGIVDEP---- 291
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P++T L +PKE W + +L+ G+ +C P C C + E C
Sbjct: 292 ---NPQKTEFALMEAIPKERWSHSHHVLIFHGRRMCKARNPECASCPIKEDC 340
>gi|397774996|ref|YP_006542542.1| endonuclease III [Natrinema sp. J7-2]
gi|397684089|gb|AFO58466.1| endonuclease III [Natrinema sp. J7-2]
Length = 227
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L +DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEDHDGEVPDTMAELTDLSGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
P++ L +P++ W L + G+ CT P CG C +++LCPSA
Sbjct: 161 -----EYPDRIEVDLMEIVPEDGWQEFTHLCIDHGRATCTAQNPDCGDCVLADLCPSAKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSE 218
>gi|335040513|ref|ZP_08533640.1| endonuclease III [Caldalkalibacillus thermarum TA2.A1]
gi|334179593|gb|EGL82231.1| endonuclease III [Caldalkalibacillus thermarum TA2.A1]
Length = 217
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 13/126 (10%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK+ I + KY+G+IP S +EL+ LPGIG K A+++M+ + + I VDTHV R+ R
Sbjct: 90 IKKMCQILIEKYNGEIPRSREELVQLPGIGRKTANVIMSTAFGD-PAIAVDTHVERVTKR 148
Query: 61 LG---WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC 117
LG W +P Q + L +PKEEW + L+ FG+ C P+C +C
Sbjct: 149 LGICRW---------KDTPLQVEKTLMKKVPKEEWAITHHRLIFFGRYHCKAQNPQCHVC 199
Query: 118 SVSELC 123
+ ELC
Sbjct: 200 PLFELC 205
>gi|147669462|ref|YP_001214280.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Dehalococcoides sp. BAV1]
gi|146270410|gb|ABQ17402.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Dehalococcoides sp. BAV1]
Length = 218
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 8 CLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQP 67
++++ G +PS + ++L LPG+G K A++V++ + V+GI VDTHV R+ RLG S
Sbjct: 100 VVSRFGGVVPSGMTDMLTLPGVGRKTANVVLHNAFGLVEGIAVDTHVKRLTERLGLTSN- 158
Query: 68 GRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAF 127
+ P + + L LP+ W + L+ G+ +C +P C C + ++CPSAF
Sbjct: 159 ------TDPVKIEQDLMALLPRTYWGDFSYYLIDHGRAVCDAKKPHCPECVLKDICPSAF 212
>gi|256828392|ref|YP_003157120.1| endonuclease III [Desulfomicrobium baculatum DSM 4028]
gi|256577568|gb|ACU88704.1| endonuclease III [Desulfomicrobium baculatum DSM 4028]
Length = 222
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+T + G +P +++E+L L G+ K A++V++ + GI VDTHV RI RLG Q
Sbjct: 101 VTHFGGQVPRTMEEMLTLAGVARKTANVVLSNAYGVHAGIAVDTHVKRISFRLGLTRQ-- 158
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
++P++ + L P+E W +N LV FG+ +C +P C C +++LCP
Sbjct: 159 -----TNPDKVEQDLLKLFPQESWGAVNHYLVLFGREVCAARKPLCDACELADLCPRTGV 213
Query: 129 DSSSPS 134
S S S
Sbjct: 214 VSRSAS 219
>gi|392964197|ref|ZP_10329618.1| DNA-(apurinic or apyrimidinic site) lyase [Fibrisoma limi BUZ 3]
gi|387847092|emb|CCH51662.1| DNA-(apurinic or apyrimidinic site) lyase [Fibrisoma limi BUZ 3]
Length = 220
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
M+ IA + ++ G +P+ + L G+GPK A+L + V I VD HVHR+ NR
Sbjct: 97 MRGIAERTVLEFGGTLPADFELLTSFKGVGPKCANLALGVAAGQA-AISVDVHVHRVVNR 155
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V T PEQT +VL+ +P+ +W+ IN LL+ FG+ ICT P C C V
Sbjct: 156 WGYV-------LTRQPEQTLKVLETKVPQGQWIDINRLLMPFGKHICTGTLPHCSTCPVL 208
Query: 121 ELC 123
+ C
Sbjct: 209 QWC 211
>gi|184200103|ref|YP_001854310.1| putative endonuclease III [Kocuria rhizophila DC2201]
gi|183580333|dbj|BAG28804.1| putative endonuclease III [Kocuria rhizophila DC2201]
Length = 278
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ +A + +YDG +P +L +L+ LPG+G K A++V+ + V GI VDTH R+ R
Sbjct: 114 IQALAARVVDEYDGTVPGTLAQLVTLPGVGRKTANVVLGNAFG-VPGITVDTHFGRLARR 172
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW Q P + + P W ++ L+ G+ IC RP CG+C V+
Sbjct: 173 LGWTVQ-------DDPVKVEADVAALFPPALWTELSHELIYHGRRICHSRRPACGVCPVA 225
Query: 121 ELCPSAFKDSSSPSS 135
+LCPS + + P +
Sbjct: 226 DLCPSYGEGPTDPEA 240
>gi|434386869|ref|YP_007097480.1| endonuclease III [Chamaesiphon minutus PCC 6605]
gi|428017859|gb|AFY93953.1| endonuclease III [Chamaesiphon minutus PCC 6605]
Length = 231
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P ++ LL LPG+ K A++V + N+QG+ VDTHV R+ N LG S
Sbjct: 107 EFDGEVPQLMEHLLTLPGVARKTANVVSAHAFGNIQGVTVDTHVKRLTNLLGLTSH---- 162
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
P + + L +PK +W + + + G+ IC +P C C ++ELCPSA
Sbjct: 163 ---QDPIKIEQDLMKLIPKVDWENFSIMTIFHGRAICNARKPNCLECELAELCPSA 215
>gi|117929200|ref|YP_873751.1| endonuclease III/DNA-(apurinic or apyrimidinic site) lyase
[Acidothermus cellulolyticus 11B]
gi|117649663|gb|ABK53765.1| DNA-(apurinic or apyrimidinic site) lyase [Acidothermus
cellulolyticus 11B]
Length = 263
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P LD+L+ LPG+G K A++V+ + + GI VDTHV R+ R GW +
Sbjct: 133 RFGGEVPDRLDDLVTLPGVGRKTANVVLGTAFG-IPGITVDTHVLRLAKRFGWTT----- 186
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
++ P + + +P+EEW ++ ++ G+ +C +P CG C ++ LCPS
Sbjct: 187 --SNDPVVVEQEIAALIPREEWTALSHRMIWHGRRVCHARKPACGACGLARLCPS 239
>gi|448408522|ref|ZP_21574317.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
gi|445674377|gb|ELZ26921.1| endonuclease III [Halosimplex carlsbadense 2-9-1]
Length = 229
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K I + ++DG++P +++EL L G+G K A++++ G++ V+GI VDTHV R+ R
Sbjct: 95 LKTSGQIIVDEHDGEVPDTMEELTELKGVGRKTANVILQHGYDLVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + + L +P++EW LL+ G+ +CT P C C ++
Sbjct: 155 LGITEEERPEAIEED-------LLPVVPEDEWKWYTHLLISHGRAVCTARNPDCSECVLA 207
Query: 121 ELCPSAFKDSS 131
++CPSA DS
Sbjct: 208 DICPSAKGDSD 218
>gi|73748703|ref|YP_307942.1| endonuclease III [Dehalococcoides sp. CBDB1]
gi|289432729|ref|YP_003462602.1| endonuclease III [Dehalococcoides sp. GT]
gi|452203689|ref|YP_007483822.1| endonuclease III [Dehalococcoides mccartyi DCMB5]
gi|452205132|ref|YP_007485261.1| endonuclease III [Dehalococcoides mccartyi BTF08]
gi|73660419|emb|CAI83026.1| endonuclease III [Dehalococcoides sp. CBDB1]
gi|288946449|gb|ADC74146.1| endonuclease III [Dehalococcoides sp. GT]
gi|452110748|gb|AGG06480.1| endonuclease III [Dehalococcoides mccartyi DCMB5]
gi|452112188|gb|AGG07919.1| endonuclease III [Dehalococcoides mccartyi BTF08]
Length = 218
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 8 CLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQP 67
++++ G +PS + ++L LPG+G K A++V++ + V+GI VDTHV R+ RLG S
Sbjct: 100 VVSRFGGVVPSGMADMLTLPGVGRKTANVVLHNAFGLVEGIAVDTHVKRLTERLGLTSN- 158
Query: 68 GRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAF 127
+ P + + L LP+ W + L+ G+ +C +P C C + ++CPSAF
Sbjct: 159 ------TDPVKIEQDLMALLPRTYWGDFSYYLIDHGRAVCDAKKPHCPECVLKDICPSAF 212
>gi|448432322|ref|ZP_21585458.1| endonuclease III [Halorubrum tebenquichense DSM 14210]
gi|445687206|gb|ELZ39498.1| endonuclease III [Halorubrum tebenquichense DSM 14210]
Length = 227
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 7/119 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 105 EHDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE---- 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKD 129
PE L +P+ +W L++ G+ CT I P C C +++LCPS D
Sbjct: 161 ---ERPEAIERDLLDIVPESDWQQFTHLMIDHGRATCTAINPDCADCVLADLCPSEKGD 216
>gi|448321572|ref|ZP_21511048.1| endonuclease III [Natronococcus amylolyticus DSM 10524]
gi|445603124|gb|ELY57092.1| endonuclease III [Natronococcus amylolyticus DSM 10524]
Length = 227
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEEHDGEVPDTMDELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
PE + L +P+ W L + G+ CT P C C ++++CPS
Sbjct: 161 -----ERPEAIEQELMALVPEGYWQQFTHLCIDHGRATCTARSPDCDDCVLADVCPSEKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSE 218
>gi|448455900|ref|ZP_21594832.1| endonuclease III [Halorubrum lipolyticum DSM 21995]
gi|445813119|gb|EMA63101.1| endonuclease III [Halorubrum lipolyticum DSM 21995]
Length = 227
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 7/119 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
K+DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 105 KHDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE---- 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKD 129
SP + L +P+ +W L++ G+ CT I P C C+++++CPS D
Sbjct: 161 ---ESPTAIEQDLLGVVPEGDWQQFTHLMIDHGRATCTAINPDCDDCALADVCPSEKGD 216
>gi|268317002|ref|YP_003290721.1| endonuclease III [Rhodothermus marinus DSM 4252]
gi|262334536|gb|ACY48333.1| endonuclease III [Rhodothermus marinus DSM 4252]
Length = 217
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
+A + ++ G++P S++ L LPG+G K A +V+ + +GI VDTHV R+ RLG
Sbjct: 96 LARQLVERHGGEVPRSMEALTALPGVGRKTAAIVLGTAFGIREGIAVDTHVSRVAQRLGL 155
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
S +P++ + L +P+E+W LV G+ +C RPRC C +++LC
Sbjct: 156 TSH-------KTPDKIEQDLMALVPREDWTWFGHALVLHGRYVCLARRPRCSQCVLADLC 208
Query: 124 P 124
P
Sbjct: 209 P 209
>gi|448677953|ref|ZP_21689143.1| endonuclease III [Haloarcula argentinensis DSM 12282]
gi|445773628|gb|EMA24661.1| endonuclease III [Haloarcula argentinensis DSM 12282]
Length = 227
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ I I + ++DG++P ++ L LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 LQGIGEILIEEHDGEVPDTMSALTDLPGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P+ EW LL+ G+ +C C C ++
Sbjct: 155 LGLTDK-------ERPEAIEQDLLDVVPEGEWQQFTHLLIDHGRAVCGARSADCEACVLA 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSD 218
>gi|448538341|ref|ZP_21622847.1| endonuclease III [Halorubrum hochstenium ATCC 700873]
gi|445701423|gb|ELZ53405.1| endonuclease III [Halorubrum hochstenium ATCC 700873]
Length = 227
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 7/119 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 105 EHDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE---- 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKD 129
PE L +P+ +W L++ G+ CT I P C C +++LCPS D
Sbjct: 161 ---ERPEAIERDLLDIVPESDWQQFTHLMIDHGRATCTAINPDCADCVLADLCPSEKGD 216
>gi|76802881|ref|YP_330976.1| repair DNA N-glycosylase / DNA-(apurinic or apyrimidinic site)
lyase [Natronomonas pharaonis DSM 2160]
gi|76558746|emb|CAI50339.1| endonuclease III [Natronomonas pharaonis DSM 2160]
Length = 229
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ K++G++P ++ EL L G+G K A++V+ G V+GI VDTHV RI RLG ++
Sbjct: 103 VEKHNGEVPDTMSELTDLAGVGRKTANVVLQHGHEVVEGIVVDTHVQRISRRLGMTTE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
P+ + L +P+++W LL+ G+ CT P CG C + ++CPS+
Sbjct: 161 -----KRPDAIEDDLIDIVPQDDWKEFTHLLISHGRETCTARNPDCGDCILEDICPSSKL 215
Query: 129 DSS 131
D+
Sbjct: 216 DND 218
>gi|424819591|ref|ZP_18244668.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus Parvarchaeum
acidophilus ARMAN-5_'5-way FS']
gi|290558918|gb|EFD92306.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Parvarchaeum
acidophilus ARMAN-5]
gi|326422568|gb|EGD71963.1| DNA-(Apurinic or apyrimidinic site) lyase [Candidatus Parvarchaeum
acidophilus ARMAN-5_'5-way FS']
Length = 217
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ +D +PS EL+ +PG+GPK+A LV+ G+ N+ I VDTHV+RI RLG+VS
Sbjct: 94 IDNFDSKVPSDKSELMKIPGVGPKVASLVLEWGF-NLPFIAVDTHVNRIVQRLGFVSI-- 150
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+ P++T ++L+ L + +N + FG+ IC PI P C C V C K
Sbjct: 151 ----GTKPDKTEKILEHALKDNIKIKVNSSFIYFGRAICKPISPLCSECPVYNYCEFKLK 206
>gi|448304976|ref|ZP_21494912.1| endonuclease III [Natronorubrum sulfidifaciens JCM 14089]
gi|445590357|gb|ELY44578.1| endonuclease III [Natronorubrum sulfidifaciens JCM 14089]
Length = 227
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L +DG++P ++DEL L G+G K A++V+ + V+GI VDTHV R+ RLG +
Sbjct: 103 LEDHDGEVPDTMDELTALSGVGRKTANVVLQHAHDVVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
PE + L +P+ W L + G+ CT P C C ++E+CPSA
Sbjct: 161 -----EYPEPIEQDLMGIVPEGYWQQFTHLCIDHGRATCTARNPDCADCVLAEICPSAKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSE 218
>gi|374628503|ref|ZP_09700888.1| endonuclease III [Methanoplanus limicola DSM 2279]
gi|373906616|gb|EHQ34720.1| endonuclease III [Methanoplanus limicola DSM 2279]
Length = 217
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ + + + +YDG +P S++EL+ LPG+G K A++V+N + GI VDTHV R+ R
Sbjct: 92 IRGASEMLVREYDGVVPDSMEELIKLPGVGRKTANIVLNHAYGIDAGIAVDTHVKRVSYR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + P++ L P+E W +N LL+ G+ +C +P C C +
Sbjct: 152 LGMTDN-------TDPDKIERDLTALYPQEVWGKMNFLLISHGRAVCDAKKPACERCCIK 204
Query: 121 ELC 123
+ C
Sbjct: 205 DYC 207
>gi|448358112|ref|ZP_21546797.1| endonuclease III [Natrialba chahannaoensis JCM 10990]
gi|445646683|gb|ELY99667.1| endonuclease III [Natrialba chahannaoensis JCM 10990]
Length = 227
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + L ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IKDSCEMILEEHDGEVPDTMDELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P+ W L + G+ CT P C C ++
Sbjct: 155 LGLTEE-------EYPEPIEQELMDLVPEGYWQQFTHLCIDHGRATCTARNPDCSDCVLA 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSE 218
>gi|409728373|ref|ZP_11271240.1| endonuclease III [Halococcus hamelinensis 100A6]
gi|448722930|ref|ZP_21705458.1| endonuclease III [Halococcus hamelinensis 100A6]
gi|445788597|gb|EMA39306.1| endonuclease III [Halococcus hamelinensis 100A6]
Length = 227
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 9/132 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A + + ++DG++P ++ +L LPG+G K A++V+ + V+G+ VDTHV R+ R
Sbjct: 95 IRESAQLVVDEHDGEVPDTMGDLTELPGVGRKTANVVLQHAHDVVEGVVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQ-TREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
LG + PE RE+++L+ P+E W L + G+ CT P C C +
Sbjct: 155 LGLTEE-------HRPETIERELMELF-PEERWQASTHLFISHGRETCTARNPDCEDCVL 206
Query: 120 SELCPSAFKDSS 131
+CPS+ DS+
Sbjct: 207 EAICPSSKLDSA 218
>gi|308178282|ref|YP_003917688.1| DNA-(apurinic or apyrimidinic site) lyase [Arthrobacter
arilaitensis Re117]
gi|307745745|emb|CBT76717.1| DNA-(apurinic or apyrimidinic site) lyase [Arthrobacter
arilaitensis Re117]
Length = 264
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
++ + ++DG +P+ L+EL+ LPG+G K A++V+ + V GI VDTH R+ NR GW
Sbjct: 103 LSAALVDRFDGQVPNKLEELVKLPGVGRKTANVVLGNAFG-VPGITVDTHFGRLANRFGW 161
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ + P + + K +W ++ +V G+ +C +P CG C +++LC
Sbjct: 162 TDE-------TDPVKVEHAVGELFEKHDWTMLSHRVVFHGRRVCHSRKPACGACEIAKLC 214
Query: 124 PS 125
PS
Sbjct: 215 PS 216
>gi|448337892|ref|ZP_21526965.1| endonuclease III [Natrinema pallidum DSM 3751]
gi|445624852|gb|ELY78225.1| endonuclease III [Natrinema pallidum DSM 3751]
Length = 227
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L ++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEEHDGEVPDTMAELTDLSGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
P++ L +P++ W L + G+ CT P C C +++LCPSA
Sbjct: 161 -----EYPDRIEADLMEIVPEDSWQEFTHLCIDHGRATCTAQNPDCRDCVLADLCPSAKG 215
Query: 129 DS 130
DS
Sbjct: 216 DS 217
>gi|326329529|ref|ZP_08195852.1| endonuclease III [Nocardioidaceae bacterium Broad-1]
gi|325952696|gb|EGD44713.1| endonuclease III [Nocardioidaceae bacterium Broad-1]
Length = 238
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 75/136 (55%), Gaps = 8/136 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K++ + + +YDG++PS L++L+ LPG+G K A++V+ + GI VDTH R+ R G
Sbjct: 103 KLSAVLVEEYDGEVPSRLEQLVKLPGVGRKTANVVLGNAFGK-PGITVDTHFGRLSRRFG 161
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W ++ P + + K +W ++ ++ G+ IC +P CG C VS+L
Sbjct: 162 WTTE-------KDPVKVEHEVGALFEKRDWTMLSHHVIWHGRRICHAQKPACGACPVSQL 214
Query: 123 CPSAFKDSSSPSSKSR 138
CP+ + + P + ++
Sbjct: 215 CPAYGEGPTDPVAAAK 230
>gi|269837262|ref|YP_003319490.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter
thermophilus DSM 20745]
gi|269786525|gb|ACZ38668.1| DNA-(apurinic or apyrimidinic site) lyase [Sphaerobacter
thermophilus DSM 20745]
Length = 220
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ IA + ++ G +P + LL G+GPK AHL + + I VD HVHR+ NR
Sbjct: 97 IHAIARATVEEHGGTLPCDRELLLGFNGVGPKCAHLALGIACGE-PWISVDVHVHRVTNR 155
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
G+V +T +P QT L+ LP+ WV IN LLV FG+ +CT RP C C V
Sbjct: 156 WGYV-------QTRTPAQTTAALEAHLPERYWVEINRLLVPFGKHVCTGDRPHCSTCPVL 208
Query: 121 ELC 123
+C
Sbjct: 209 PMC 211
>gi|219852559|ref|YP_002466991.1| endonuclease III [Methanosphaerula palustris E1-9c]
gi|219546818|gb|ACL17268.1| endonuclease III [Methanosphaerula palustris E1-9c]
Length = 212
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + ++ G IPS+++ELLLLPG+G K A++++ GI VDTHV R+ RLG
Sbjct: 94 AAMLVNRFGGTIPSTMEELLLLPGVGRKTANILLFHALGINAGIAVDTHVKRLAGRLGLT 153
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ + + EQ +++ L+ P+E W + +++ G+ CT I P CG+C VS +CP
Sbjct: 154 T----RIEQDLIEQ--DLMNLY-PQERWGDLTDIMIAHGRRCCTAINPHCGVCPVSNVCP 206
>gi|126698144|ref|YP_001087041.1| endonuclease III [Clostridium difficile 630]
gi|260682265|ref|YP_003213550.1| endonuclease iii [Clostridium difficile CD196]
gi|260685864|ref|YP_003216997.1| endonuclease iii [Clostridium difficile R20291]
gi|115249581|emb|CAJ67398.1| Endonuclease III [Clostridium difficile 630]
gi|260208428|emb|CBA60983.1| endonuclease iii [Clostridium difficile CD196]
gi|260211880|emb|CBE02318.1| endonuclease iii [Clostridium difficile R20291]
Length = 201
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG++P SL++L+ LPG+G K A +V++ +N+ I VDTHV R+ NR+G V +P
Sbjct: 88 YDGEVPDSLEKLIKLPGVGRKTAGVVLSNAFNH-PAIAVDTHVFRVSNRIGIVDEP---- 142
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P++T L +PKE W + +L+ G+ +C P C C + E C
Sbjct: 143 ---NPQKTEFALMEAIPKERWSHSHHVLIFHGRRMCKARNPECASCPIKEDC 191
>gi|300087945|ref|YP_003758467.1| endonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527678|gb|ADJ26146.1| endonuclease III [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 213
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + K+DG +P ++ EL+ +PG K A++V+ + ++GI VDTHV R+ RLG+
Sbjct: 97 LLVEKFDGQVPQTMAELIQIPGAARKTANIVLWNAFGKIEGIAVDTHVARLAKRLGY--- 153
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ P++ + L +P EEW L+ G+ IC +P+C C + E+CP+A
Sbjct: 154 ----SQEKDPDKIEKNLMKIVPHEEWGRFPHLIQEHGRVICFARKPKCVECFMKEICPTA 209
Query: 127 F 127
F
Sbjct: 210 F 210
>gi|395785433|ref|ZP_10465165.1| endonuclease III [Bartonella tamiae Th239]
gi|423717668|ref|ZP_17691858.1| endonuclease III [Bartonella tamiae Th307]
gi|395424980|gb|EJF91151.1| endonuclease III [Bartonella tamiae Th239]
gi|395427068|gb|EJF93184.1| endonuclease III [Bartonella tamiae Th307]
Length = 242
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y G+IP + DEL+ LPG+G K A++V+NV + + VDTH+ R+CNR+G PG+
Sbjct: 114 YHGEIPHTRDELMALPGVGRKTANVVLNVAFGQ-PTMAVDTHIFRLCNRIGLA--PGK-- 168
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
SPE E L +PK + L+ G+ IC P C C ++++C +A K +S
Sbjct: 169 ---SPEDVEEKLLKIVPKSYIKHAHHWLILHGRYICKARHPNCAQCIIADICKAAVKSNS 225
Query: 132 SP 133
P
Sbjct: 226 LP 227
>gi|294781929|ref|ZP_06747261.1| endonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|294481740|gb|EFG29509.1| endonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 216
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV RI N
Sbjct: 90 IKKCSQQLLEKYNGEIPQDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRITNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V K+ P + + L +PK+ W+ + L+ G+ C RP+C C +S
Sbjct: 150 IGLV-------KSEDPIKIEQELMKIVPKKSWIVFSHYLILHGRATCIARRPQCKNCEIS 202
Query: 121 ELC 123
E C
Sbjct: 203 EYC 205
>gi|310779540|ref|YP_003967873.1| endonuclease III [Ilyobacter polytropus DSM 2926]
gi|309748863|gb|ADO83525.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Ilyobacter polytropus DSM 2926]
Length = 219
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ KY+G++PS ++ L+ LPG+G K A++V W GI VDTHV R+ N +G+V
Sbjct: 98 VEKYNGEVPSKMENLVALPGVGRKTANVVRGEIWGLSDGITVDTHVKRLSNLIGFV---- 153
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
K + E+ L +PK+ W+ + L+ G+ +C RP+C C ++ LC K
Sbjct: 154 ---KEENVEKIERELMEIVPKKRWIDFSHYLILQGRDVCIARRPKCSACEINHLCNYGRK 210
Query: 129 DSSSPSSKS 137
S K+
Sbjct: 211 MMRKSSEKN 219
>gi|433456810|ref|ZP_20414838.1| DNA-(apurinic or apyrimidinic site) lyase [Arthrobacter
crystallopoietes BAB-32]
gi|432195671|gb|ELK52182.1| DNA-(apurinic or apyrimidinic site) lyase [Arthrobacter
crystallopoietes BAB-32]
Length = 274
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 75/130 (57%), Gaps = 8/130 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ +YDG++P+ L++L+ L G+G K A++V+ + V GI VDTH R+ R GW +
Sbjct: 118 VDEYDGEVPNKLEDLVTLAGVGRKTANVVLGNAFG-VPGITVDTHFGRLARRFGWTNS-- 174
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
T + + +V L+ PK+ W ++ +V G+ +C +P CG C V++LCPS +
Sbjct: 175 ----TDAVKVESDVAALFEPKD-WTMLSHRVVFHGRRVCHAKKPACGACPVADLCPSFGE 229
Query: 129 DSSSPSSKSR 138
+ PS ++
Sbjct: 230 GETDPSKAAK 239
>gi|313127105|ref|YP_004037375.1| endonuclease iii; DNA-(apurinic or apyrimidinic site) lyase
[Halogeometricum borinquense DSM 11551]
gi|448288427|ref|ZP_21479626.1| DNA-(apurinic or apyrimidinic site) lyase [Halogeometricum
borinquense DSM 11551]
gi|312293470|gb|ADQ67930.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Halogeometricum borinquense DSM 11551]
gi|445569578|gb|ELY24150.1| DNA-(apurinic or apyrimidinic site) lyase [Halogeometricum
borinquense DSM 11551]
Length = 227
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ I + ++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 LQSIGETLVEEHDGEVPDTMSELTDLSGVGRKTANVVLQHGHDVVEGIVVDTHVRRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE+ + L +P+ +W L + G+ +C P C C +
Sbjct: 155 LGITEE-------ERPEKIEQDLMPVVPEADWQQFTHLFISHGRAVCDARNPDCDECVLE 207
Query: 121 ELCPSAFKD 129
+LCPS+ D
Sbjct: 208 DLCPSSKLD 216
>gi|383454717|ref|YP_005368706.1| endonuclease III [Corallococcus coralloides DSM 2259]
gi|380733642|gb|AFE09644.1| endonuclease III [Corallococcus coralloides DSM 2259]
Length = 211
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ ++ L + G++P +++L+ LPG+ K A++V+N +N G+ VDTHV R+ R
Sbjct: 90 VQAVSRALLDAHGGEVPDRMEDLVELPGVARKTANVVLNTAFNQASGVIVDTHVARVSQR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG Q PE L +PK++W P +V G+ C +P+C C +
Sbjct: 150 LGLTKQ-------EKPEAIETDLMKLVPKDDWTFFGPAVVLHGRYTCVAKKPKCAECLFN 202
Query: 121 ELCP 124
++CP
Sbjct: 203 DVCP 206
>gi|87311493|ref|ZP_01093612.1| DNA-(apurinic or apyrimidinic site) lyase [Blastopirellula marina
DSM 3645]
gi|87285749|gb|EAQ77664.1| DNA-(apurinic or apyrimidinic site) lyase [Blastopirellula marina
DSM 3645]
Length = 219
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 65/113 (57%), Gaps = 7/113 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
YDG +P+ LD L+ LPG+G K A++V+ + G+ VDTHV R+ R+G +Q
Sbjct: 108 YDGQVPADLDALVALPGVGRKTANVVLGTAFGIPTGVVVDTHVGRLSRRMGLTAQ----- 162
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ + E++QL LP++EW+ + ++ G+ IC +P+C C + CP
Sbjct: 163 -VDAVKVESELIQL-LPQKEWIQFSHRMIHHGRAICDARKPKCDQCHFMKFCP 213
>gi|337747107|ref|YP_004641269.1| hypothetical protein KNP414_02839 [Paenibacillus mucilaginosus
KNP414]
gi|379720962|ref|YP_005313093.1| hypothetical protein PM3016_3078 [Paenibacillus mucilaginosus 3016]
gi|386723570|ref|YP_006189896.1| hypothetical protein B2K_15605 [Paenibacillus mucilaginosus K02]
gi|336298296|gb|AEI41399.1| Nth [Paenibacillus mucilaginosus KNP414]
gi|378569634|gb|AFC29944.1| Nth [Paenibacillus mucilaginosus 3016]
gi|384090695|gb|AFH62131.1| hypothetical protein B2K_15605 [Paenibacillus mucilaginosus K02]
Length = 231
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 14/148 (9%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ + I L KYDG++P ++L+ LPG+G K A++V++ + V I VDTHV R+ R
Sbjct: 89 IQALCAILLDKYDGEVPQEHEKLVELPGVGRKTANVVVSNAFG-VPAIAVDTHVERVSKR 147
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ + K S E +++++ +P+EEW + L+ FG+ C P+CG C +
Sbjct: 148 LGFAAH-----KDSVLEVEKKLMK-RVPREEWTDTHHRLIFFGRYHCKAQNPKCGECPLL 201
Query: 121 ELCPSA---FKDSSS----PSSKSRKSA 141
+LC K +SS P +KS K+A
Sbjct: 202 DLCREGKKRMKTNSSRKPIPKAKSSKTA 229
>gi|42522185|ref|NP_967565.1| endo III-related endonuclease [Bdellovibrio bacteriovorus HD100]
gi|39574716|emb|CAE78558.1| Endo III-related endonuclease [Bdellovibrio bacteriovorus HD100]
Length = 221
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + K+ G++P SL+ L+ L G+G K A++V+ +N GI VDTHV R+ NR
Sbjct: 101 LKACATTLVEKHHGEVPQSLEALVELGGVGRKTANVVLGNAFNIPSGIVVDTHVTRLANR 160
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV KT + L +P E+W+ + L+ G+ +C +P C C +
Sbjct: 161 LGWV-------KTDNAVMIERQLSKLVPVEDWIMLPHWLISHGRAVCKARKPACSHCFLE 213
Query: 121 ELCP 124
E CP
Sbjct: 214 ETCP 217
>gi|218295273|ref|ZP_03496109.1| endonuclease III [Thermus aquaticus Y51MC23]
gi|218244476|gb|EED11001.1| endonuclease III [Thermus aquaticus Y51MC23]
Length = 217
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L Y G++P + L+ LPG+G K A +V+ + V GI VDTHV R+ RL
Sbjct: 106 LEDYGGEVPRDKEALMRLPGVGWKTATVVLGAAFG-VPGIAVDTHVARLARRLCL----- 159
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
+ +PE+ E L+ PK+ WV ++ LV G+ +CT RPRCG C ++ CPS
Sbjct: 160 --SEARTPEKIAEDLEALFPKDHWVFVHHALVLHGRYVCTARRPRCGACPLAPHCPS 214
>gi|334339915|ref|YP_004544895.1| endonuclease III [Desulfotomaculum ruminis DSM 2154]
gi|334091269|gb|AEG59609.1| endonuclease III [Desulfotomaculum ruminis DSM 2154]
Length = 224
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P + L+LLPG+G K A++V+ V + VDTHVHR+ +RLG S
Sbjct: 105 ILVEQYGGEVPQDRESLMLLPGVGRKTANVVLGVVFGQAT-FPVDTHVHRLAHRLGLSS- 162
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
SPEQT L +P E+W + L+ G+ +C +P+C C V++LCPSA
Sbjct: 163 ------GKSPEQTELDLCALIPPEQWQRAHHQLIYHGRRVCDARKPKCPDCCVNDLCPSA 216
>gi|342216539|ref|ZP_08709186.1| endonuclease III [Peptoniphilus sp. oral taxon 375 str. F0436]
gi|341587429|gb|EGS30829.1| endonuclease III [Peptoniphilus sp. oral taxon 375 str. F0436]
Length = 218
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A I + Y +P +++EL+ LPG+G K A++V + + V I VDTHV R NR+G
Sbjct: 97 AKILVEDYQSQVPETIEELVKLPGVGQKTANVVASTCFG-VDAIAVDTHVFRTSNRIGLA 155
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K + E+T LQ +PK+ W + LL+ G+ IC P+C +C ++E+C
Sbjct: 156 -------KAKTVEETEVQLQKAIPKDRWTKTHHLLIFLGRRICASRSPKCEICPLTEVCH 208
Query: 125 SAFKDSSS 132
K+ S
Sbjct: 209 YYHKNQES 216
>gi|452207737|ref|YP_007487859.1| endonuclease III [Natronomonas moolapensis 8.8.11]
gi|452083837|emb|CCQ37164.1| endonuclease III [Natronomonas moolapensis 8.8.11]
Length = 227
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 7/120 (5%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+DG++P ++ EL L G+G K A++V+ G V+GI VDTHV RI RLG +
Sbjct: 106 HDGEVPDTMSELTDLAGVGRKTANVVLQHGHEVVEGIVVDTHVQRISRRLGLTEE----- 160
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
+PE+ L +P+ +W LL+ G+ CT P C C + ++CPS+ DS
Sbjct: 161 --HTPERIESDLMGVVPEGDWKEFTHLLISHGRDTCTARNPDCSNCVLEDICPSSKLDSD 218
>gi|91774091|ref|YP_566783.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Methanococcoides burtonii DSM 6242]
gi|91713106|gb|ABE53033.1| Endonuclease III [Methanococcoides burtonii DSM 6242]
Length = 219
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + + L+ ++G +P +++EL PG+ K A++V+ G+ V+GI VDTHV R+ +
Sbjct: 99 IKRTSQLILSDFNGKVPDTMEELTTFPGVARKTANIVLARGFGKVEGIAVDTHVKRVSGK 158
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + + P++ + L +++W ++ L+ G+ +C +P+C +C +S
Sbjct: 159 LGLT-------ENTDPKKIEQDLMKLAEQKDWEDLSMTLILHGRRVCDAKKPQCIVCLLS 211
Query: 121 ELCPSAF 127
+LCPS+
Sbjct: 212 KLCPSSL 218
>gi|377573320|ref|ZP_09802384.1| endonuclease III [Mobilicoccus pelagius NBRC 104925]
gi|377537982|dbj|GAB47549.1| endonuclease III [Mobilicoccus pelagius NBRC 104925]
Length = 283
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
++ + ++DG++P+SL L+ LPG+G K A++V+ ++ + GI VDTH R+ RLGW
Sbjct: 137 LSAALVERHDGEVPASLPALVELPGVGRKTANVVLGNAFD-IPGITVDTHFGRVVRRLGW 195
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ P + E + +P++EW ++ +L+ G+ C RP CG C+V+ C
Sbjct: 196 TDE-------EDPVKVEEAVGALVPRKEWTMLSHVLIFHGRRTCHSRRPACGACAVARWC 248
Query: 124 PSA 126
SA
Sbjct: 249 DSA 251
>gi|359459568|ref|ZP_09248131.1| endonuclease III [Acaryochloris sp. CCMEE 5410]
Length = 223
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+DG +P+ +D LL LPG+ K A++V+ G+ G+ VDTHV R+ NRLG
Sbjct: 105 FDGQVPNQMDLLLTLPGVARKTANVVLAHGYGINMGVTVDTHVKRLSNRLGLTHH----- 159
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
P + + L LP+E+W + L+ G+ +C+ +P C C++++LCPSA
Sbjct: 160 --QDPVKIEQDLMKLLPQEDWENWSIRLIYHGRAVCSARKPTCDRCALNDLCPSA 212
>gi|421874622|ref|ZP_16306225.1| endonuclease III [Brevibacillus laterosporus GI-9]
gi|372456478|emb|CCF15774.1| endonuclease III [Brevibacillus laterosporus GI-9]
Length = 190
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 13/142 (9%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I +C L +Y G++P+ +EL+ LPG+G K A++V++V + V I VDTHV RI
Sbjct: 56 KHIQSLCRLLLEEYGGEVPNKHEELVKLPGVGRKTANVVVSVAFG-VPAIAVDTHVERIS 114
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
RLG+ ++P Q E+L +PK++W + ++ FG+ C P+C +C
Sbjct: 115 KRLGFCPD------DATPVQVEEILMKKIPKKDWSDTHHRMIFFGRYHCKAQSPQCDICP 168
Query: 119 VSELCPS---AFKDSSSPSSKS 137
+ ++CP+ A K + P S S
Sbjct: 169 LEDVCPTRKKARKVNKKPKSVS 190
>gi|406994421|gb|EKE13413.1| hypothetical protein ACD_13C00021G0015 [uncultured bacterium]
Length = 199
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K +A I LT Y G +P + EL LPG+G K A+LV+N + V I VDTHVHRI N
Sbjct: 86 LKTLARIVLTSYGGKVPKTQKELNTLPGVGIKTANLVLNRAF-GVPAIAVDTHVHRISNL 144
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIR 111
LGWV T +PEQT + L +PK+ W +N L V G+ + R
Sbjct: 145 LGWVH-------TKTPEQTEKELIKVVPKKYWPDMNRLFVSIGRQFTSKKR 188
>gi|406993461|gb|EKE12589.1| Endonuclease III [uncultured bacterium]
Length = 199
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 8/108 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K +A + K++G+IP + EL LPG+G K A+LV+N + ++ I VDTHVHRI N
Sbjct: 86 IKLLAETVIKKFNGEIPKTQKELTTLPGVGVKTANLVLNRAF-SIPAIAVDTHVHRISNL 144
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICT 108
LGWV T +PEQT + L +PK+ W +N L V G+ +
Sbjct: 145 LGWVH-------TKTPEQTEKELVRRVPKKYWSEMNRLFVSVGRQFTS 185
>gi|448308692|ref|ZP_21498567.1| endonuclease III [Natronorubrum bangense JCM 10635]
gi|445592972|gb|ELY47151.1| endonuclease III [Natronorubrum bangense JCM 10635]
Length = 227
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 2 KKIAPICLT---KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I C T ++DG++P ++DEL L G+G K A++V+ + V+GI VDTHV R+
Sbjct: 93 KYIRSACTTIIEEHDGEVPDTMDELTELSGVGRKTANVVLQHAHDVVEGIVVDTHVQRLS 152
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
RLG ++ PE + L +P+ W L + G+ CT P C C
Sbjct: 153 RRLGLTNE-------EYPEPIEQDLMGIVPEGYWQQFTHLCIDHGRATCTARNPDCADCV 205
Query: 119 VSELCPSAFKDS 130
++++CPSA DS
Sbjct: 206 LADICPSAKGDS 217
>gi|389846287|ref|YP_006348526.1| endonuclease III [Haloferax mediterranei ATCC 33500]
gi|448616095|ref|ZP_21664805.1| endonuclease III [Haloferax mediterranei ATCC 33500]
gi|388243593|gb|AFK18539.1| endonuclease III [Haloferax mediterranei ATCC 33500]
gi|445750750|gb|EMA02187.1| endonuclease III [Haloferax mediterranei ATCC 33500]
Length = 227
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ K+DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 IEKHDGEVPDTMSELTDLAGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
SP++ L +P+ +W + L + G+ +C+ P C +C + ++CPS+
Sbjct: 161 -----ESPKRIETDLMPVVPEMDWQQLTHLFISHGRAVCSARNPDCDVCVLEDICPSS 213
>gi|404369469|ref|ZP_10974807.1| endonuclease III [Fusobacterium ulcerans ATCC 49185]
gi|404288245|gb|EFS27500.2| endonuclease III [Fusobacterium ulcerans ATCC 49185]
Length = 376
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L+KY+G+IP +D+L+ L G+G K A++V W GI VDTHV R+ N +G V
Sbjct: 261 LSKYNGEIPKDMDKLIELAGVGRKTANVVRGEVWGLADGITVDTHVKRLTNLIGLV---- 316
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K P + + L +PK++W+ + L+ G+ C RP+C C + E C
Sbjct: 317 ---KNDDPVKIEQELMKIVPKKDWIDFSHYLILQGRDKCIARRPKCSECEIREFC 368
>gi|296130925|ref|YP_003638175.1| endonuclease III [Cellulomonas flavigena DSM 20109]
gi|296022740|gb|ADG75976.1| endonuclease III [Cellulomonas flavigena DSM 20109]
Length = 228
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I + ++ G++P L++L+ LPG+G K A++V+ + V GI VDTHV R+ RLGW
Sbjct: 98 IGAALVERFGGEVPRRLEDLVTLPGVGRKTANVVLGNAFG-VPGITVDTHVQRLSQRLGW 156
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ ++ P L L + EW + L+ G+ C RP CG C V+ LC
Sbjct: 157 TT-------STDPVVIEAELGALLERREWTMASHRLIFHGRRTCFARRPACGACPVAALC 209
Query: 124 PSAFKDSSSP 133
PSA + P
Sbjct: 210 PSAGSGETDP 219
>gi|376295407|ref|YP_005166637.1| endonuclease III [Desulfovibrio desulfuricans ND132]
gi|323457968|gb|EGB13833.1| endonuclease III [Desulfovibrio desulfuricans ND132]
Length = 211
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + Y+G++P ++ EL+ L G+ K A +V+ + +GI VDTHV R+ R
Sbjct: 90 IKAAATRIMEVYNGEVPRTMAELITLGGVARKTASIVLANAFGVNEGIAVDTHVKRLAFR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G ++ + P Q + L P+E W +N LLV FG+ +C +P C +C ++
Sbjct: 150 MGLTTK-------TEPVQIEKDLMPLFPRETWGDVNHLLVFFGREVCPARKPHCDVCELN 202
Query: 121 ELCP 124
++CP
Sbjct: 203 DICP 206
>gi|339008005|ref|ZP_08640579.1| putative endonuclease III [Brevibacillus laterosporus LMG 15441]
gi|338775208|gb|EGP34737.1| putative endonuclease III [Brevibacillus laterosporus LMG 15441]
Length = 221
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 13/142 (9%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I +C L +Y G++P+ +EL+ LPG+G K A++V++V + V I VDTHV RI
Sbjct: 87 KHIQSLCRLLLEEYGGEVPNKHEELVKLPGVGRKTANVVVSVAFG-VPAIAVDTHVERIS 145
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
RLG+ ++P Q E+L +PK++W + ++ FG+ C P+C +C
Sbjct: 146 KRLGFCPD------DATPVQVEEILMKKIPKKDWSDTHHRMIFFGRYHCKAQSPQCDICP 199
Query: 119 VSELCPS---AFKDSSSPSSKS 137
+ ++CP+ A K + P S S
Sbjct: 200 LEDVCPTRKKARKVNKKPKSVS 221
>gi|229817097|ref|ZP_04447379.1| hypothetical protein BIFANG_02353 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784886|gb|EEP21000.1| hypothetical protein BIFANG_02353 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 207
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
+A + +++DG++PS++DEL LPG+G K A++V+ ++ + G VDTHV R+ RL W
Sbjct: 87 LAQVLASRFDGEVPSTMDELTSLPGVGRKTANVVLGNAFH-IPGFPVDTHVMRVTGRLRW 145
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
S + +P + P E+W ++ L+ G+ IC +P CG+C +++ C
Sbjct: 146 RSD--WRHANPNPVAVEREITACFPPEQWTDLSHRLILHGRAICHARKPDCGICPLADSC 203
Query: 124 PSA 126
PSA
Sbjct: 204 PSA 206
>gi|284164375|ref|YP_003402654.1| endonuclease III [Haloterrigena turkmenica DSM 5511]
gi|284014030|gb|ADB59981.1| endonuclease III [Haloterrigena turkmenica DSM 5511]
Length = 227
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L ++ G++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEEHGGEVPDTMDELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
PE + L +P W L + G+ CT P CG C ++++CPS
Sbjct: 161 -----KRPEAIEQDLMEIVPDGYWQQFTHLCIDHGRATCTARNPDCGDCVLADICPSEKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSE 218
>gi|358458341|ref|ZP_09168552.1| endonuclease III [Frankia sp. CN3]
gi|357078472|gb|EHI87920.1| endonuclease III [Frankia sp. CN3]
Length = 241
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++DG++P LDEL+ LPG+G K A++V+ ++ GI VDTHV R+ R G +
Sbjct: 110 VDRFDGEVPHKLDELVTLPGVGRKTANVVLGHAFDT-PGITVDTHVGRLSRRFGLTTN-- 166
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
P + L + ++ W + ++ G+ IC RP CG C V++LCPS +
Sbjct: 167 -----DDPVKVESDLATLIERKNWTIASDRMIFHGRRICHARRPACGACGVAKLCPSFGE 221
Query: 129 DSSSPSSKSR 138
+S + +R
Sbjct: 222 GPTSAADAAR 231
>gi|308812275|ref|XP_003083445.1| Endonuclease III (ISS) [Ostreococcus tauri]
gi|116055325|emb|CAL57721.1| Endonuclease III (ISS) [Ostreococcus tauri]
Length = 296
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNN----VQGICVDTHVHRICNRLGWVSQ 66
K+ +P ++ L LPG+G K+AHLV +V ++ G+ VDTHV R+ RLGWV
Sbjct: 174 KFRDTVPRTVGALKTLPGVGDKLAHLVASVSYDESSAQYAGVVVDTHVQRVSRRLGWVG- 232
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K PE+ R LQ + +++W + L+ GQ +C P C C + CP+A
Sbjct: 233 -----KCDDPERVRMKLQARVHRDDWEELTLGLIALGQNVCHSRNPACDRCPLRTRCPAA 287
>gi|340759558|ref|ZP_08696126.1| endonuclease III [Fusobacterium varium ATCC 27725]
gi|251835680|gb|EES64219.1| endonuclease III [Fusobacterium varium ATCC 27725]
Length = 376
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L+KY+G+IP +D+L+ L G+G K A++V W GI VDTHV R+ N +G V
Sbjct: 261 LSKYNGEIPKDMDKLIELAGVGRKTANVVRGEVWGLADGITVDTHVKRLSNLIGLV---- 316
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K P + + L +PK++W+ + L+ G+ C RP+C C + E C
Sbjct: 317 ---KNDDPIKIEQDLMKIVPKKDWIDFSHYLILQGRDKCIARRPKCNECEIKEFCE 369
>gi|442320612|ref|YP_007360633.1| endonuclease III [Myxococcus stipitatus DSM 14675]
gi|441488254|gb|AGC44949.1| endonuclease III [Myxococcus stipitatus DSM 14675]
Length = 210
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L ++G++P +++EL+ LPG+ K A++V+N ++ G+ VDTHV R+ RLG
Sbjct: 98 LADFNGEVPRTIEELVKLPGVARKTANVVLNTAFDIASGVIVDTHVARVSQRLGLT---- 153
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K PE + L +P++ W P V G+ C +P+C C V ++CP
Sbjct: 154 ---KHDKPEAIEQDLMKLVPQDAWTFFGPATVLHGRYTCVAKKPKCDECLVKDICP 206
>gi|41615185|ref|NP_963683.1| hypothetical protein NEQ398 [Nanoarchaeum equitans Kin4-M]
gi|40068909|gb|AAR39244.1| NEQ398 [Nanoarchaeum equitans Kin4-M]
Length = 212
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 12/115 (10%)
Query: 15 DIPSSLDELLL--LPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQK 72
D DE + LPG+G K+ ++ +N+ N I VD HVHRI NRLGWV K
Sbjct: 103 DYNKKCDESFIRNLPGVGRKVGNVYLNLVCNK-PYIAVDVHVHRIANRLGWV-------K 154
Query: 73 TSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAF 127
T +PE+T + L +PKE W +N +LV FG+ IC P +P+C +C + CP +
Sbjct: 155 TKTPEETEKQLYKIIPKEYWPKLNHMLVLFGRNICLPSKPKCDICPLD--CPYKY 207
>gi|288818057|ref|YP_003432405.1| endonuclease III [Hydrogenobacter thermophilus TK-6]
gi|384128821|ref|YP_005511434.1| endonuclease III [Hydrogenobacter thermophilus TK-6]
gi|288787457|dbj|BAI69204.1| endonuclease III [Hydrogenobacter thermophilus TK-6]
gi|308751658|gb|ADO45141.1| endonuclease III [Hydrogenobacter thermophilus TK-6]
Length = 209
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 66/119 (55%), Gaps = 7/119 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + Y G++P S++EL LPG+G K A++++ + +GI VDTH R+ RLG +
Sbjct: 95 MIIEDYGGEVPKSIEELTRLPGVGRKTANMILYNAFGINEGIAVDTHTARVSKRLGLTEE 154
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
P++ + L PKEEW ++ LL+ G+ ICT P+ C + +LCPS
Sbjct: 155 -------EKPDKIEQELMQITPKEEWGKLSNLLILHGRYICTAKNPKHKECVLYDLCPS 206
>gi|269793831|ref|YP_003313286.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III
[Sanguibacter keddieii DSM 10542]
gi|269096016|gb|ACZ20452.1| DNA-(apurinic or apyrimidinic site) lyase /endonuclease III
[Sanguibacter keddieii DSM 10542]
Length = 238
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ I + ++ G++P SLDEL+ LPG+G K A++V+ + V GI VDTHV R+ R
Sbjct: 104 LAGIGAALVERHGGEVPGSLDELVALPGVGRKTANVVLGDAFG-VPGITVDTHVGRLVRR 162
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW + + P + + + EW ++ ++ G+ +C RP CG C V+
Sbjct: 163 WGWTT-------SEDPVVVEREIGALVERSEWTLLSHRVIFHGRRVCFARRPACGACPVA 215
Query: 121 ELCPSAFKDSSSPSSKS 137
LCPSA + P + +
Sbjct: 216 GLCPSAGIGETDPEAAA 232
>gi|87303146|ref|ZP_01085944.1| endonuclease III [Synechococcus sp. WH 5701]
gi|87282313|gb|EAQ74273.1| endonuclease III [Synechococcus sp. WH 5701]
Length = 228
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + ++DG +P+S++ELL LPG+ K A++V+ + G+ VDTHV R+ NRLG Q
Sbjct: 100 LLIERHDGAVPASMEELLELPGVARKTANVVLAHAFGINAGVTVDTHVRRLSNRLGLTRQ 159
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
S P + L LP+ EW + L+ G+ +C +P C C +++LCPS
Sbjct: 160 -------SDPRRIEPDLMKLLPQPEWENFSIRLIFHGRAVCNARKPLCAGCPLADLCPSH 212
Query: 127 FKDSSSPSSKSRKSAQ 142
S + R++ +
Sbjct: 213 PDHGPSGRREGRQATR 228
>gi|84495136|ref|ZP_00994255.1| putative endonuclease III [Janibacter sp. HTCC2649]
gi|84384629|gb|EAQ00509.1| putative endonuclease III [Janibacter sp. HTCC2649]
Length = 263
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P L +L+ LPG+G K A++V+ + V GI VDTH R+ R GW +
Sbjct: 115 RFGGEVPPRLKDLVTLPGVGRKTANVVLGNAFE-VPGITVDTHFGRLVRRFGWTEE---- 169
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
+ P + + P+++WV ++ +L+ G+ C RP CG C VS+ CPS +
Sbjct: 170 ---TDPVKVEHAIGALFPRKDWVMLSHVLIFHGRRTCHARRPACGACPVSQWCPSYGEGE 226
Query: 131 SSPSS 135
+ P++
Sbjct: 227 TDPAT 231
>gi|448365104|ref|ZP_21553662.1| endonuclease III [Natrialba aegyptia DSM 13077]
gi|445656380|gb|ELZ09215.1| endonuclease III [Natrialba aegyptia DSM 13077]
Length = 227
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 2 KKIAPICLT---KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I C T ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+
Sbjct: 93 KYIRSACQTIVEEHDGEVPDTMDELTDLSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLS 152
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
RLG + PE + L +P+ W L + G+ CT P C C
Sbjct: 153 RRLGLTEE-------EYPEPIEQELMELVPEGYWQQFTHLCIDHGRATCTARNPDCDDCV 205
Query: 119 VSELCPSAFKDSS 131
++++CPS DS
Sbjct: 206 LADICPSEKGDSE 218
>gi|448352032|ref|ZP_21540825.1| endonuclease III [Natrialba taiwanensis DSM 12281]
gi|445632114|gb|ELY85333.1| endonuclease III [Natrialba taiwanensis DSM 12281]
Length = 227
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 2 KKIAPICLT---KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I C T ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+
Sbjct: 93 KYIRSACQTIVEEHDGEVPDTMDELTDLSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLS 152
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
RLG + PE + L +P+ W L + G+ CT P C C
Sbjct: 153 RRLGLTEE-------EYPEPIEQELMELVPEGYWQQFTHLCIDHGRATCTARNPDCDDCV 205
Query: 119 VSELCPSAFKDSS 131
++++CPS DS
Sbjct: 206 LADICPSEKGDSE 218
>gi|238926207|ref|ZP_04657967.1| DNA-(apurinic or apyrimidinic site) lyase [Selenomonas flueggei
ATCC 43531]
gi|238885887|gb|EEQ49525.1| DNA-(apurinic or apyrimidinic site) lyase [Selenomonas flueggei
ATCC 43531]
Length = 210
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 8/120 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I L +YDG++P+ + L LPG+G K A++VM+V ++ + I VDTHV R+ NRL
Sbjct: 97 ILLDEYDGEVPADFEALQKLPGVGRKTANVVMSVAFH-MPAIAVDTHVFRVANRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
R ++P + + LQ +P+E+W + L+ G+ +C +P C C+++++CPS+
Sbjct: 151 --RLAVGTTPLEVEKGLQKVIPREDWSDAHHWLILHGRQVCKARKPLCDTCALAQVCPSS 208
>gi|294674100|ref|YP_003574716.1| endonuclease III [Prevotella ruminicola 23]
gi|294473695|gb|ADE83084.1| endonuclease III [Prevotella ruminicola 23]
Length = 211
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A + + K++G++PS+LDELL LPG+G K A+++ +V + + VDTHV R+ +RLG
Sbjct: 92 EMARVLMEKFNGEVPSTLDELLTLPGVGRKTANVIQSVAFGKA-TLAVDTHVFRVAHRLG 150
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
VS+ ++P + L ++P+E+ + L+ G+ +CT +P C C + +
Sbjct: 151 LVSKSD-----NTPYKVEMALTKYIPEEDIPNAHHWLLLHGRYVCTARKPHCEKCEIEKY 205
Query: 123 C 123
C
Sbjct: 206 C 206
>gi|358466608|ref|ZP_09176414.1| hypothetical protein HMPREF9093_00886 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357068912|gb|EHI78884.1| hypothetical protein HMPREF9093_00886 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 216
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV RI N
Sbjct: 90 IKKCSQQLLEKYNGEIPQDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRITNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V K+ P + + L +PK+ W+ + L+ G+ C RP+C C +S
Sbjct: 150 IGLV-------KSEDPIKIEQELMKIVPKKSWIVFSHYLILHGRATCIARRPQCENCEIS 202
Query: 121 ELC 123
E C
Sbjct: 203 ECC 205
>gi|448387918|ref|ZP_21564946.1| endonuclease III [Haloterrigena salina JCM 13891]
gi|445671310|gb|ELZ23902.1| endonuclease III [Haloterrigena salina JCM 13891]
Length = 227
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L ++DG +P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEEHDGKVPDTMDELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
PE + L +P+ W L + G+ CT P C C ++++CPS
Sbjct: 161 -----QRPEAIEQDLMGIVPEGYWQQFTHLCIDHGRATCTARNPDCSDCVLADICPSEKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSE 218
>gi|206895438|ref|YP_002247351.1| endonuclease III [Coprothermobacter proteolyticus DSM 5265]
gi|206738055|gb|ACI17133.1| endonuclease III [Coprothermobacter proteolyticus DSM 5265]
Length = 209
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 16 IPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSS 75
+P + +L +PGIGPK A +V GW + I VD HV RI RLGW + +T
Sbjct: 103 VPKTTKQLTQVPGIGPKCAAIVRAFGWG-IPDIAVDAHVQRISKRLGWTEEKDDHLRT-- 159
Query: 76 PEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
QT+ L+ LP EWV +N LLV G+ +C P RP C C ++ LCP
Sbjct: 160 --QTK--LKTLLPIHEWVYVNHLLVSLGRHVCRPQRPLCHQCVLNSLCP 204
>gi|379058515|ref|ZP_09849041.1| DNA-(apurinic or apyrimidinic site) lyase [Serinicoccus profundi
MCCC 1A05965]
Length = 247
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K+ + +++G +P+ L +L+ LPG+G K A++V+ ++ V GI VDTHV R+ R
Sbjct: 110 LLKLGAALVERFEGQVPARLTDLVTLPGVGRKTANVVLGNAFD-VPGITVDTHVGRLARR 168
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW P + P+ EW ++ +L+ G+ C +P CG C V+
Sbjct: 169 FGWTD-------AEDPVAVEHAVGALFPRREWTQLSHVLIFHGRRTCHARKPACGACPVA 221
Query: 121 ELCPSAFKDSSSPSSKS 137
LCP+ + P + +
Sbjct: 222 RLCPAYGVGETDPVAAA 238
>gi|422939814|ref|ZP_16967185.1| endonuclease III [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339890838|gb|EGQ79906.1| endonuclease III [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 203
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G++P +D+L L G+G K A++V W GI VDTHV RI N
Sbjct: 77 IKKCSEQLLEKYNGEVPQDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRISNL 136
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 137 IGLVD-------SEDPIKIELELMKIVPKKSWINFSHYLILHGRATCIARRPRCSECEIS 189
Query: 121 ELCPSAFKDSSSPS 134
+ C K S+ +
Sbjct: 190 KYCNYGIKKLSNEN 203
>gi|452910245|ref|ZP_21958926.1| Endonuclease III [Kocuria palustris PEL]
gi|452834492|gb|EME37292.1| Endonuclease III [Kocuria palustris PEL]
Length = 320
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 2 KKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRL 61
+ +A ++DG +P L++L+ LPG+G K A++V+ ++ V GI VDTH R+ R
Sbjct: 157 QGLAQAIEDEHDGQVPGRLEDLVKLPGVGRKTANVVLGNAFD-VPGITVDTHFGRLARRF 215
Query: 62 GWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE 121
GW Q P + + E+W ++ LV G+ IC RP CG+C V++
Sbjct: 216 GWTGQ-------EDPVKVEHEVGALFEPEDWTDLSHRLVYHGRRICHAKRPACGVCPVAD 268
Query: 122 LCPS 125
LCPS
Sbjct: 269 LCPS 272
>gi|403737479|ref|ZP_10950275.1| endonuclease III [Austwickia chelonae NBRC 105200]
gi|403192427|dbj|GAB77045.1| endonuclease III [Austwickia chelonae NBRC 105200]
Length = 248
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K++ L ++DG +P L EL+ L G+G K A++V+ + V GI VDTHV R+ R
Sbjct: 106 LLKLSAELLARHDGRVPGRLKELVALSGVGRKTANVVLGNAFG-VPGITVDTHVGRLARR 164
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW + P + P++EW ++ L+ G+ C RP CG C+V+
Sbjct: 165 FGWTT-------AEDPVVVETEVGALFPRKEWTMLSHTLIFHGRRTCHARRPACGACTVA 217
Query: 121 ELCPSAFKDSSSPSSKS 137
LCPS + P+ +
Sbjct: 218 SLCPSHGIGETDPARAA 234
>gi|55980081|ref|YP_143378.1| endonuclease III [Thermus thermophilus HB8]
gi|55771494|dbj|BAD69935.1| endonuclease III [Thermus thermophilus HB8]
Length = 220
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ +Y G++P + L+ LPG+G K A +V+ + V GI VDTHV R+ RL +
Sbjct: 109 VEEYGGEVPKEKEALMRLPGVGWKTATVVLGAAFG-VPGIAVDTHVARLARRLCF----- 162
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
+ +PE+ + L+ PKE+WV ++ LV G+ +CT RPRC C ++ CPS
Sbjct: 163 --SEAKAPERIGKDLEALFPKEDWVFVHHALVLHGRYVCTARRPRCRACVLAPYCPS 217
>gi|383782985|ref|YP_005467552.1| putative endonuclease [Actinoplanes missouriensis 431]
gi|381376218|dbj|BAL93036.1| putative endonuclease [Actinoplanes missouriensis 431]
Length = 276
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K+ L ++DG +P LDEL+ LPGIG K A++++ + V GI VDTH R+ NR G
Sbjct: 117 KLGQALLDRHDGQLPRKLDELVKLPGIGRKTANVILGNAF-GVPGITVDTHFRRLTNRFG 175
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV + P + ++ + K +W ++ ++ G+ +C +P CG C+++ +
Sbjct: 176 WVDE-------EDPVKIEFLVAELIEKRDWTMLSHRVIFHGRRVCHARKPACGACTLASM 228
Query: 123 CPS 125
CP+
Sbjct: 229 CPA 231
>gi|373498867|ref|ZP_09589365.1| endonuclease III [Fusobacterium sp. 12_1B]
gi|371960146|gb|EHO77812.1| endonuclease III [Fusobacterium sp. 12_1B]
Length = 189
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L+KY+G+IP +D+L+ L G+G K A++V W GI VDTHV R+ N +G V
Sbjct: 74 LSKYNGEIPKDMDKLIELAGVGRKTANVVRGEVWGLADGITVDTHVKRLTNLIGLV---- 129
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K P + + L +PK++W+ + L+ G+ C RP+C C + E C
Sbjct: 130 ---KNDDPVKIEQELMKIVPKKDWIDFSHYLILQGRDKCIARRPKCSECEIREFC 181
>gi|330470528|ref|YP_004408271.1| endonuclease III [Verrucosispora maris AB-18-032]
gi|328813499|gb|AEB47671.1| endonuclease III [Verrucosispora maris AB-18-032]
Length = 259
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+YDG +P L +L+ LPGIG K A++++ ++ V GI VDTH R+ +R G S+
Sbjct: 109 RYDGQVPGRLADLVTLPGIGRKTANVILGNAFD-VPGITVDTHFQRLVHRWGLTSE---- 163
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
+ P + + PK +W ++ ++ G+ +C +P CG C++++LCPS
Sbjct: 164 ---TDPVKIEHAIGAMFPKRDWTMLSHRIIFHGRRVCHARKPACGACTLTKLCPSYGTGP 220
Query: 131 SSPSSKSR 138
+ P++ ++
Sbjct: 221 TEPAAAAK 228
>gi|397690878|ref|YP_006528132.1| endonuclease III [Melioribacter roseus P3M]
gi|395812370|gb|AFN75119.1| endonuclease III [Melioribacter roseus P3M]
Length = 233
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ KY G +P+ + L LPG+G K A +V + + I VDTHV R+ N LG+V
Sbjct: 117 IEKYGGKVPADFEALTKLPGVGRKTASVVAGNAFG-IPSIAVDTHVIRLTNLLGFV---- 171
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+TS P++ L+ LP++ W+ + LL+ G+ IC RP+C CS+S CPS K
Sbjct: 172 ---ETSDPKKIEFKLKELLPEDLWIVSSHLLMSHGRKICIARRPKCDECSISNYCPSKNK 228
Query: 129 DS 130
++
Sbjct: 229 NT 230
>gi|448318656|ref|ZP_21508170.1| endonuclease III [Natronococcus jeotgali DSM 18795]
gi|445598250|gb|ELY52313.1| endonuclease III [Natronococcus jeotgali DSM 18795]
Length = 227
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K L ++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IKSTCETILEEHDGEVPDTMAELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE L +P+E W L + G+ CT P C C ++
Sbjct: 155 LGLTEE-------ERPEAIERELMEIVPEEYWQGFTHLCIDHGRATCTARSPDCDDCVLA 207
Query: 121 ELCPSAFKD 129
++CPS D
Sbjct: 208 DICPSERGD 216
>gi|406933355|gb|EKD68032.1| hypothetical protein ACD_48C00103G0005 [uncultured bacterium]
Length = 219
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
K++G++P +++ELL LPG+ K A++++ + +GI VDTHV R+ RL VS +
Sbjct: 100 KFNGEVPKTMEELLTLPGVARKTANVILWSAFGKNEGIAVDTHVMRLSERLELVSSKAYR 159
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+P + + L +P+ EW P L+ G+ IC +P+C +C +++ CP
Sbjct: 160 ----NPVKIEKELMKIIPESEWGPAAYQLIDHGRAICQAKKPKCSLCPLNKFCP 209
>gi|426402569|ref|YP_007021540.1| endo III-related endonuclease [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425859237|gb|AFY00273.1| endo III-related endonuclease [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 217
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + K+ G++P +L+ L+ L G+G K A++V+ +N GI VDTHV R+ NR
Sbjct: 97 LKACATTLVEKHGGEVPQNLEALVELGGVGRKTANVVLGNAFNIPSGIVVDTHVTRLSNR 156
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GWV KT + L ++P E+W+ + L+ G+ +C +P C C +
Sbjct: 157 FGWV-------KTDNAVMIERQLSKFVPVEDWIMLPHWLISHGRAVCKARKPACSHCFLE 209
Query: 121 ELCP 124
E CP
Sbjct: 210 ETCP 213
>gi|448362821|ref|ZP_21551425.1| endonuclease III [Natrialba asiatica DSM 12278]
gi|445647443|gb|ELZ00417.1| endonuclease III [Natrialba asiatica DSM 12278]
Length = 227
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 2 KKIAPICLT---KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I C T ++DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+
Sbjct: 93 KYIRSACQTIVEEHDGEVPDTMDELTDLSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLS 152
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
RLG + PE L +P+ W L + G+ CT P C C
Sbjct: 153 RRLGLTEE-------EYPEPIERELMELVPEGYWQQFTHLCIDHGRATCTARNPDCDDCV 205
Query: 119 VSELCPSAFKDSS 131
++++CPS DS
Sbjct: 206 LADICPSEKGDSE 218
>gi|448419852|ref|ZP_21580696.1| endonuclease III [Halosarcina pallida JCM 14848]
gi|445674766|gb|ELZ27303.1| endonuclease III [Halosarcina pallida JCM 14848]
Length = 227
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A + K+ G++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IRSAAADIVEKHGGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + ++ L +P+E+W + L + G+ +CT P CG C +
Sbjct: 155 LGITEEERPERIEED-------LMPVVPEEDWQQLTHLFISHGRAVCTARNPDCGACVLE 207
Query: 121 ELCPSAFKDS 130
++CPS+ DS
Sbjct: 208 DVCPSSKLDS 217
>gi|108805468|ref|YP_645405.1| DNA-(apurinic or apyrimidinic site) lyase/endonuclease III
[Rubrobacter xylanophilus DSM 9941]
gi|108766711|gb|ABG05593.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Rubrobacter xylanophilus DSM 9941]
Length = 214
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ +A L ++ G++P +++EL+ LPG+G K A++V+ + +G+ VDTHV R+ R
Sbjct: 89 IQGMARALLERHGGEVPKTMEELVALPGVGRKTANVVLGNAFGVNEGVVVDTHVRRVSRR 148
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG S + PE+ L +P+EE LL+ G+ +C RP C C ++
Sbjct: 149 LGLTS-------SDDPEKIERDLLPQVPEEERTLFAHLLIFHGRRVCKARRPDCPGCVLN 201
Query: 121 ELCPSA 126
++CPS+
Sbjct: 202 DICPSS 207
>gi|448613307|ref|ZP_21663187.1| endonuclease III [Haloferax mucosum ATCC BAA-1512]
gi|445740204|gb|ELZ91710.1| endonuclease III [Haloferax mucosum ATCC BAA-1512]
Length = 227
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ K+ G++P ++ +L L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 IEKHGGEVPDTMSDLTDLAGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTDE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
S PE+ E L +P+ +W L + G+ +C P C C + ++CPS+
Sbjct: 161 -----SYPERIEEDLMPVVPERDWQQFTHLFISHGRAVCDARNPDCDACVLEDICPSS 213
>gi|212704718|ref|ZP_03312846.1| hypothetical protein DESPIG_02781 [Desulfovibrio piger ATCC 29098]
gi|212671845|gb|EEB32328.1| endonuclease III [Desulfovibrio piger ATCC 29098]
Length = 222
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y G++P LDEL+ LPG+ K A++V+ + +G+ VDTHV RI RLG +
Sbjct: 109 YGGEVPPRLDELITLPGVARKTANVVLFGAFGINEGLAVDTHVKRISYRLGLTAH----- 163
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ P + L P+ EW +N +V FG+ +C PRC C +++ CP
Sbjct: 164 --TDPVDIEQDLMRLFPRAEWGDVNHRMVWFGRDVCHARSPRCTECEMADFCP 214
>gi|307150297|ref|YP_003885681.1| endonuclease III [Cyanothece sp. PCC 7822]
gi|306980525|gb|ADN12406.1| endonuclease III [Cyanothece sp. PCC 7822]
Length = 219
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
++++ G++P +++LL LPG+ K A++V+ G+ +QG+ VDTHV R+ RLG Q
Sbjct: 105 VSQFGGEVPQQMEQLLSLPGVARKTANVVLAHGFGIIQGVTVDTHVKRLSGRLGLTEQ-- 162
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAF 127
+ P + L LP+ +W + ++ G+ +C +P CG+C ++ +CP+A
Sbjct: 163 -----TDPIKIERDLMRLLPQPQWENFSIRIIYHGRAVCKARKPDCGVCQLAHVCPAAI 216
>gi|422339740|ref|ZP_16420697.1| endonuclease III [Fusobacterium nucleatum subsp. polymorphum F0401]
gi|355370583|gb|EHG17963.1| endonuclease III [Fusobacterium nucleatum subsp. polymorphum F0401]
Length = 162
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 36 IKKCSEQLLEKYNGEIPKDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRLTNL 95
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 96 IGLVD-------SEDPIKIELELMKIVPKKSWIVFSHYLILHGRATCIARRPRCSECEIS 148
Query: 121 ELCPSAFKDSSSPS 134
+ C K S+ +
Sbjct: 149 KYCNYGIKKLSNDN 162
>gi|319941589|ref|ZP_08015915.1| endonuclease III [Sutterella wadsworthensis 3_1_45B]
gi|319804959|gb|EFW01801.1| endonuclease III [Sutterella wadsworthensis 3_1_45B]
Length = 250
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + ++ G++P + DEL+ LPG+G K A++VMNV + I VDTH+ R+CNR G+
Sbjct: 96 ILIDRFHGEVPRTRDELVSLPGVGRKTANVVMNVAFGE-PAIAVDTHIFRVCNRTGFA-- 152
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
PG+ +P + E L +PK+ + + L+ FG+ IC P C C V+E C
Sbjct: 153 PGK-----NPTEVEEKLLKVVPKDYLLNAHHWLLLFGRYICKARNPECVRCPVAEYC 204
>gi|383622576|ref|ZP_09948982.1| endonuclease III [Halobiforma lacisalsi AJ5]
gi|448694519|ref|ZP_21697019.1| endonuclease III [Halobiforma lacisalsi AJ5]
gi|445785104|gb|EMA35899.1| endonuclease III [Halobiforma lacisalsi AJ5]
Length = 227
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEDHGGEVPDTMDELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRRLGLTEE-- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
PE + L +P+ W L + G+ ICT P C C ++++CPS
Sbjct: 161 -----KRPEAIEQELMGIVPEGYWQQFTHLCIDHGRAICTARNPDCSGCVLADICPSEKG 215
Query: 129 DSS 131
DS
Sbjct: 216 DSD 218
>gi|383784019|ref|YP_005468587.1| endonuclease III/Nth [Leptospirillum ferrooxidans C2-3]
gi|383082930|dbj|BAM06457.1| putative endonuclease III/Nth [Leptospirillum ferrooxidans C2-3]
Length = 212
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G +P ++DEL+ LPG+G K A +V+ G++ + I VDTHV R+ NRLG
Sbjct: 103 FHGKVPDNIDELVKLPGVGRKTASVVLAYGFH-IPAIAVDTHVIRVSNRLGLTV------ 155
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
+S PE+ L +P+E+W+ L+ G+ +C +P CG C +S LCPS
Sbjct: 156 -SSDPEEIESDLCSIIPREDWINSGSRLLLHGRYVCVARKPLCGSCVLSNLCPS 208
>gi|15789799|ref|NP_279623.1| endonuclease III [Halobacterium sp. NRC-1]
gi|169235518|ref|YP_001688718.1| DNA-(apurinic or apyrimidinic site) lyase endonuclease III
[Halobacterium salinarum R1]
gi|10580185|gb|AAG19103.1| endonuclease III [Halobacterium sp. NRC-1]
gi|167726584|emb|CAP13369.1| endonuclease III [Halobacterium salinarum R1]
Length = 227
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A L +DG +P ++ +L L G+G K A++V+ G + QGI VDTHV R+ R
Sbjct: 95 IKSAAQSILEDHDGAVPDTMSDLTDLSGVGRKTANVVLQHGHDLTQGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG +++ R PE L +P++ W L+ G+ CT P CG C ++
Sbjct: 155 LG-ITEKKR------PEAIETDLMPVVPEDHWKNYTHWLIAHGRETCTARNPDCGACVLA 207
Query: 121 ELCPSAFKD 129
++CPS+ D
Sbjct: 208 DICPSSKTD 216
>gi|269129033|ref|YP_003302403.1| endonuclease III [Thermomonospora curvata DSM 43183]
gi|268313991|gb|ACZ00366.1| endonuclease III [Thermomonospora curvata DSM 43183]
Length = 246
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G +P +++L+ L G+G K A++V+ + V GI VDTH R+ R GW SQ
Sbjct: 119 RHGGQVPDRMEDLVELAGVGRKTANVVLGNAFE-VPGITVDTHFGRLARRFGWTSQ---- 173
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
T + REV +L +P++EW ++ ++ G+ IC RP CG+C ++ LCPS +
Sbjct: 174 --TDPVKVEREVAEL-IPRKEWTILSHRMIWHGRRICHARRPACGVCPLARLCPSFGEGP 230
Query: 131 SSPSSKSR 138
+ P + ++
Sbjct: 231 TDPEAAAK 238
>gi|428311864|ref|YP_007122841.1| DNA-(apurinic or apyrimidinic site) lyase [Microcoleus sp. PCC
7113]
gi|428253476|gb|AFZ19435.1| endonuclease III [Microcoleus sp. PCC 7113]
Length = 238
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 72/128 (56%), Gaps = 7/128 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ +T++ G++P ++ELL LPG+ K A++V+ ++ G+ VDTHV R+ NRLG
Sbjct: 103 MIMTEFGGEVPKRMEELLNLPGVARKTANVVLAHAYDIHAGVTVDTHVKRLSNRLGLTEH 162
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ P + L LP+ EW + L+ G+ IC +P C C+++++CPSA
Sbjct: 163 -------TDPIRIERDLMRLLPQAEWENWSIRLIYHGRAICQARKPLCDHCALADICPSA 215
Query: 127 FKDSSSPS 134
++ P+
Sbjct: 216 ALSNTLPT 223
>gi|325110554|ref|YP_004271622.1| DNA-(apurinic or apyrimidinic site) lyase [Planctomyces
brasiliensis DSM 5305]
gi|324970822|gb|ADY61600.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Planctomyces brasiliensis DSM 5305]
Length = 237
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++DG++P L+ L LPG+G K A++++ V +N+ G+ VDTHV RI LG
Sbjct: 117 VERHDGEVPKDLEALCKLPGVGRKTANVLLGVWYNHPSGVVVDTHVKRISRLLGLT---- 172
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ + PE+ + L LP++EW+ + L+ G+ IC RP+C C + +CP
Sbjct: 173 ---EANQPEKIEQELMQKLPRKEWIDFSHRLIYHGRQICIARRPKCCECRLLAVCP 225
>gi|358066130|ref|ZP_09152664.1| endonuclease III [Clostridium hathewayi WAL-18680]
gi|356695993|gb|EHI57618.1| endonuclease III [Clostridium hathewayi WAL-18680]
Length = 231
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 15/137 (10%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQG---ICVDTHVHRICNRLGWVS 65
+ +Y+G++PS+++EL L G+G K A NV N+ G I VDTHV RI +LG+
Sbjct: 106 VERYNGEVPSTIEELTSLAGVGRKTA----NVIRGNIYGEPSIVVDTHVKRISRKLGFA- 160
Query: 66 QPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
K PE+ L +PK+ W+ N ++ G++IC P+C C + E CPS
Sbjct: 161 ------KEEDPEKIEYELMKVIPKDHWILWNIQIITLGRSICFARSPKCEECFLREYCPS 214
Query: 126 A-FKDSSSPSSKSRKSA 141
A K+++ P S+ +S+
Sbjct: 215 AETKETAKPKSRKGESS 231
>gi|298243344|ref|ZP_06967151.1| endonuclease III [Ktedonobacter racemifer DSM 44963]
gi|297556398|gb|EFH90262.1| endonuclease III [Ktedonobacter racemifer DSM 44963]
Length = 222
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 7/121 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L Y G++P ++ EL+ +PGI K A++++ + V G VDTHV R+ R GW Q
Sbjct: 108 LDHYGGEVPGTMAELVRIPGIARKTANVILGNAFGVVDGFIVDTHVDRLSKRFGWSKQ-- 165
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+ R+++ L +P+E W+ + ++ G+ +C +P C C+++ CPSA
Sbjct: 166 ----NDIVKIERDLMAL-VPREHWLEVAHRIIYHGRAVCNARKPLCAQCTLASYCPSAML 220
Query: 129 D 129
D
Sbjct: 221 D 221
>gi|55377588|ref|YP_135438.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|448639924|ref|ZP_21677072.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
gi|448659418|ref|ZP_21683273.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|55230313|gb|AAV45732.1| endonuclease III [Haloarcula marismortui ATCC 43049]
gi|445760359|gb|EMA11622.1| endonuclease III [Haloarcula californiae ATCC 33799]
gi|445762451|gb|EMA13672.1| endonuclease III [Haloarcula sinaiiensis ATCC 33800]
Length = 227
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ I I ++DG++P ++ L LPG+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 LQGIGEILTEEHDGEVPDTMSALTDLPGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L + PE + L +P+ EW LL+ G+ +C C C ++
Sbjct: 155 LELTEE-------ERPEAIEQDLLDVVPESEWQQFTHLLIDHGRAVCGARSADCEACVLA 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSE 218
>gi|421526583|ref|ZP_15973190.1| endonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257140|gb|EJU07615.1| endonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 216
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEIPQDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRLTNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V+ P + L +PK+ W+ + L+ G+ C RP+C C +S
Sbjct: 150 IGLVNN-------EDPIKIELDLMKIVPKKSWIVFSHYLILHGRATCIARRPKCSECEIS 202
Query: 121 ELCPSAFKDSSSPS 134
E C K S+ +
Sbjct: 203 EYCNYGVKKLSNDN 216
>gi|238588806|ref|XP_002391837.1| hypothetical protein MPER_08677 [Moniliophthora perniciosa FA553]
gi|215457043|gb|EEB92767.1| hypothetical protein MPER_08677 [Moniliophthora perniciosa FA553]
Length = 305
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A ++D D+P ++DEL LPG+GPKMA L + V WN GI VD HVHRI NR
Sbjct: 215 LKQAAIRLRDEFDSDVPKTVDELCSLPGVGPKMAFLALQVAWNLNHGIGVDVHVHRITNR 274
Query: 61 LGWVSQPGRKQKTSSPEQTREVL 83
LGW P T + E+TR V
Sbjct: 275 LGWHKPP-----TKNSEETRHVF 292
>gi|307352991|ref|YP_003894042.1| endonuclease III [Methanoplanus petrolearius DSM 11571]
gi|307156224|gb|ADN35604.1| endonuclease III [Methanoplanus petrolearius DSM 11571]
Length = 215
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
+ I + + G++P +++EL+ LPG+G K A++V+N + +GI VDTHV R+ R+G
Sbjct: 96 SKILCSDFGGEVPRTMEELVTLPGVGRKTANIVLNHAFGIDEGIAVDTHVKRVSWRIGLT 155
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ P + L PK+ W +N LL+ G+ ICT +P C C + + C
Sbjct: 156 DN-------TDPVKIEMDLTALFPKDAWGKMNYLLISHGRAICTARKPDCERCVIKDFC- 207
Query: 125 SAFKDSSS 132
F++ +S
Sbjct: 208 RYFREQNS 215
>gi|293376428|ref|ZP_06622660.1| endonuclease III [Turicibacter sanguinis PC909]
gi|325845046|ref|ZP_08168362.1| endonuclease III [Turicibacter sp. HGF1]
gi|292644937|gb|EFF63015.1| endonuclease III [Turicibacter sanguinis PC909]
gi|325488922|gb|EGC91315.1| endonuclease III [Turicibacter sp. HGF1]
Length = 214
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 71/123 (57%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ ++ I L KYDG +PS+ +EL+ LPG+G K A++V++VG+ V I VDTHV RI R
Sbjct: 90 IQALSQILLDKYDGVVPSTFEELVKLPGVGRKTANVVLSVGF-GVPRIAVDTHVERISKR 148
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L + +K T + R L +P+ W + L++ FG+ CT P+C C +
Sbjct: 149 LDF----AKKDDTVLEVENR--LMKLIPENRWSKAHHLMIFFGRYHCTAKNPKCETCPLF 202
Query: 121 ELC 123
+ C
Sbjct: 203 DAC 205
>gi|434400039|ref|YP_007134043.1| endonuclease III [Stanieria cyanosphaera PCC 7437]
gi|428271136|gb|AFZ37077.1| endonuclease III [Stanieria cyanosphaera PCC 7437]
Length = 220
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+++G +P +++LL LPG+ K A++V+ G+ QG+ VDTHV R+ NRLG
Sbjct: 108 EFNGQVPQQMEQLLTLPGVARKTANVVLAHGFGINQGVTVDTHVKRLSNRLGLT------ 161
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
K P + + L LP+ +W + ++ G+ +C P+C +C ++ LCPS K
Sbjct: 162 -KNQDPIKIEQDLMKLLPQADWENFSIRIIYHGRAVCKARNPQCHICELAHLCPSRTK 218
>gi|347734103|ref|ZP_08867155.1| endonuclease III [Desulfovibrio sp. A2]
gi|347517195|gb|EGY24388.1| endonuclease III [Desulfovibrio sp. A2]
Length = 255
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G++P ++ EL+ LPG+ K A++V+ + +GI VDTHV RI RLG+
Sbjct: 101 HGGEVPRTMAELVQLPGVARKTANVVLWGAYGINEGIAVDTHVKRIAFRLGFT------- 153
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
++ P Q L P++ W +N +LV FG+ +C PRCG C + E+CP
Sbjct: 154 ESVDPVQIERDLVALFPQDAWGDVNHMLVWFGRHVCDARAPRCGECEMIEVCP 206
>gi|373107960|ref|ZP_09522251.1| endonuclease III [Stomatobaculum longum]
gi|371650126|gb|EHO15594.1| endonuclease III [Stomatobaculum longum]
Length = 212
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++ A + L ++DG +P ++ LL LPG+G K A+L++ + I VDTHV R+ R
Sbjct: 92 LRACAQVLLLRFDGTVPDEMEALLTLPGVGRKTANLILGEIYGK-PSIVVDTHVKRVSRR 150
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V+ + P + L+ LP+ W+ N L+ G+T CT P C C +S
Sbjct: 151 LGLVT-------ATDPTKVEAELKTVLPESFWILWNTRLMALGRTYCTAKAPNCADCYLS 203
Query: 121 ELCP 124
+LCP
Sbjct: 204 DLCP 207
>gi|262067349|ref|ZP_06026961.1| endonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378912|gb|EFE86430.1| endonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 216
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV RI N
Sbjct: 90 IKKCSQQLLEKYNGEIPQDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRITNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V K+ P + + L +PK+ W+ + L+ G+ C RP+C C +S
Sbjct: 150 IGLV-------KSEDPIKIEQELMKIVPKKSWIVFSHYLILHGRATCIARRPQCKNCEIS 202
Query: 121 ELC 123
+ C
Sbjct: 203 DCC 205
>gi|340754393|ref|ZP_08691148.1| endonuclease III [Fusobacterium sp. 2_1_31]
gi|422315374|ref|ZP_16396810.1| endonuclease III [Fusobacterium periodonticum D10]
gi|229423904|gb|EEO38951.1| endonuclease III [Fusobacterium sp. 2_1_31]
gi|404592517|gb|EKA94335.1| endonuclease III [Fusobacterium periodonticum D10]
Length = 216
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV RI N
Sbjct: 90 IKKCSQQLLEKYNGEIPQDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRITNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V K+ P + + L +PK+ W+ + L+ G+ C RP+C C +S
Sbjct: 150 IGLV-------KSEDPIKIEQELMKIVPKKSWIVFSHYLILHGRATCIARRPQCKNCEIS 202
Query: 121 ELC 123
+ C
Sbjct: 203 DCC 205
>gi|302385477|ref|YP_003821299.1| endonuclease III [Clostridium saccharolyticum WM1]
gi|302196105|gb|ADL03676.1| endonuclease III [Clostridium saccharolyticum WM1]
Length = 218
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK ++ G +P +D++L L G+G K A L + + + GI VDTHV RI R
Sbjct: 89 LKKCCGQIANEFGGQVPGDIDKILTLAGVGRKTATLFLADAYG-IPGITVDTHVFRISRR 147
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW S +P Q LQ LPK+ W IN L+ G+ +CT + CG C V
Sbjct: 148 LGWAS-------GKNPAQVEMELQRILPKDHWNRINFQLIYHGREVCTARKANCGECMVR 200
Query: 121 ELC 123
E C
Sbjct: 201 EWC 203
>gi|448382771|ref|ZP_21562266.1| endonuclease III [Haloterrigena thermotolerans DSM 11522]
gi|445661240|gb|ELZ14031.1| endonuclease III [Haloterrigena thermotolerans DSM 11522]
Length = 227
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L +DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 103 LEDHDGEVPDTMDELTELSGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTEEEY 162
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
++ L +P+++W L + G+ +CT P CG C ++++CPS
Sbjct: 163 PERIEED-------LMGIVPEDDWQQFTHLCIDHGRAVCTAQNPDCGDCVLADVCPSEKG 215
Query: 129 D 129
D
Sbjct: 216 D 216
>gi|402311856|ref|ZP_10830787.1| endonuclease III [Lachnospiraceae bacterium ICM7]
gi|400371003|gb|EJP23982.1| endonuclease III [Lachnospiraceae bacterium ICM7]
Length = 209
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 8/118 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
LT + G++PS+LD+LL LPG+G K A+++ ++ + I VDTHV RI +LG+
Sbjct: 98 LTDFGGEVPSNLDDLLTLPGVGRKTANVIRGNIFD-LPSIVVDTHVKRITKKLGFT---- 152
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
++ P + L LPK+ W+ N L+ G+TIC R +C +C + + CPSA
Sbjct: 153 ---ESDDPVKIEFELMEILPKDHWIVWNTDLITLGRTICIARREKCDICFLRDDCPSA 207
>gi|354611750|ref|ZP_09029706.1| endonuclease III [Halobacterium sp. DL1]
gi|353196570|gb|EHB62072.1| endonuclease III [Halobacterium sp. DL1]
Length = 227
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A + ++DG++P +++ L L G+G K A++V+ + +GI VDTHV R+ R
Sbjct: 95 IKSSAQTLIEEHDGEVPDTMEALTDLKGVGRKTANVVLQHAHDITEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG +++ R PE + L +P+E W L+ G+ CT P CG C V
Sbjct: 155 LG-ITEAER------PEAIEQDLMPVVPREHWKNYTHWLIAHGRNTCTARNPDCGDCIVE 207
Query: 121 ELCPSAFKD 129
++CPS+ D
Sbjct: 208 DICPSSKLD 216
>gi|260495310|ref|ZP_05815437.1| endonuclease III [Fusobacterium sp. 3_1_33]
gi|260197088|gb|EEW94608.1| endonuclease III [Fusobacterium sp. 3_1_33]
Length = 216
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G++P +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEVPQDMDKLTELAGVGRKTANVVRGDIWGLADGITVDTHVKRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGLVD-------SEDPIKIELELMKIVPKKSWINFSHYLILHGRATCIARRPRCSECEIS 202
Query: 121 ELCPSAFKDSSSPS 134
+ C K S+ +
Sbjct: 203 KYCNYGIKKLSNEN 216
>gi|289582883|ref|YP_003481349.1| endonuclease III [Natrialba magadii ATCC 43099]
gi|448283654|ref|ZP_21474926.1| endonuclease III [Natrialba magadii ATCC 43099]
gi|289532436|gb|ADD06787.1| endonuclease III [Natrialba magadii ATCC 43099]
gi|445573254|gb|ELY27777.1| endonuclease III [Natrialba magadii ATCC 43099]
Length = 227
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + L ++DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ R
Sbjct: 95 IKDSCEMILEEHDGEVPDTMSELTELSGVGRKTANVVLQHGHDVVEGIVVDTHVQRLSRR 154
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + PE + L +P+ W L + G+ CT P C C ++
Sbjct: 155 LGLTEE-------EYPEPIEQELMDLVPEGYWQQFTHLCIDHGRATCTARNPDCSDCVLA 207
Query: 121 ELCPSAFKDSS 131
++CPS DS
Sbjct: 208 DICPSEKGDSE 218
>gi|429759627|ref|ZP_19292125.1| endonuclease III [Veillonella atypica KON]
gi|429179588|gb|EKY20835.1| endonuclease III [Veillonella atypica KON]
Length = 230
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P D+L+ LPG+G K A++V++V + I VDTHV R+ NRL
Sbjct: 116 ILVEQYHGEVPREFDQLVELPGVGRKTANVVVSVLFGT-PAIAVDTHVFRVANRL----- 169
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+ + LQ +PKE+W + L+ G+ +C +P C C + LCPSA
Sbjct: 170 --KLGIAKTPEEMEQKLQKAIPKEKWSAAHHWLIYHGRRVCKARKPLCETCFLHHLCPSA 227
Query: 127 FK 128
K
Sbjct: 228 GK 229
>gi|212550403|ref|YP_002308720.1| endonuclease III [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
gi|212548641|dbj|BAG83309.1| endonuclease III [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
Length = 217
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
+A + + Y G +PS++ EL+ LPG+G K A++V ++ + + I VDTHV R+ NR+G
Sbjct: 93 MAKMLVASYAGQVPSNIKELMKLPGVGRKTANVVASIAFG-IPAIAVDTHVFRVSNRIGL 151
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ T +P QT VL +PK+ W + L+ G+ IC +P C C + E C
Sbjct: 152 TNH------TQTPIQTEYVLTKHIPKKLWTKAHHWLILHGRYICIARKPHCYNCGLKEFC 205
Query: 124 PSAFKD 129
K+
Sbjct: 206 DYFSKN 211
>gi|320335030|ref|YP_004171741.1| endonuclease III [Deinococcus maricopensis DSM 21211]
gi|319756319|gb|ADV68076.1| endonuclease III [Deinococcus maricopensis DSM 21211]
Length = 224
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ +A + + ++ GD+P+ D ++ LPG G K A++V++ + I VDTHV R+ R
Sbjct: 101 LVALAGLLVERHGGDVPNDFDAVVALPGAGRKTANVVLSNAFG-FPAIAVDTHVGRLARR 159
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ ++ ++P++ LQ P+E+WV ++ L+ G+ +C RP C C+++
Sbjct: 160 LGFTAE-------TNPDKVEVQLQRLFPREQWVFLHHALILHGRRVCLARRPVCSACALA 212
Query: 121 ELCP 124
+CP
Sbjct: 213 AVCP 216
>gi|237743208|ref|ZP_04573689.1| endonuclease III [Fusobacterium sp. 7_1]
gi|289765578|ref|ZP_06524956.1| endonuclease III [Fusobacterium sp. D11]
gi|229433504|gb|EEO43716.1| endonuclease III [Fusobacterium sp. 7_1]
gi|289717133|gb|EFD81145.1| endonuclease III [Fusobacterium sp. D11]
Length = 216
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G++P +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEVPQDMDKLTELAGVGRKTANVVRGDIWGLADGITVDTHVKRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGLVD-------SEDPIKIELELMKIVPKKSWINFSHYLILHGRATCIARRPRCSECEIS 202
Query: 121 ELCPSAFKDSSSPS 134
+ C K S+ +
Sbjct: 203 KYCNYGIKKLSNEN 216
>gi|218888021|ref|YP_002437342.1| endonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758975|gb|ACL09874.1| endonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 281
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G++P ++ EL+ LPG+ K A++V+ + +GI VDTHV RI R+G+
Sbjct: 101 HGGEVPRTMAELVQLPGVARKTANVVLWGAYGINEGIAVDTHVKRIAFRMGFT------- 153
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP-SAFKDS 130
++ P Q L P++ W +N +LV FG+ +C PRCG C + E+CP
Sbjct: 154 ESVDPVQIERDLMDLFPRDAWGDVNHMLVWFGRHVCDARAPRCGECEMIEVCPRHGVGQK 213
Query: 131 SSPSSKSRK 139
++K RK
Sbjct: 214 EGAATKVRK 222
>gi|16330354|ref|NP_441082.1| endonuclease III [Synechocystis sp. PCC 6803]
gi|383322095|ref|YP_005382948.1| endonuclease III [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325264|ref|YP_005386117.1| endonuclease III [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491148|ref|YP_005408824.1| endonuclease III [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436415|ref|YP_005651139.1| endonuclease III [Synechocystis sp. PCC 6803]
gi|451814512|ref|YP_007450964.1| endonuclease III [Synechocystis sp. PCC 6803]
gi|3023691|sp|P73715.1|END3_SYNY3 RecName: Full=Endonuclease III; AltName: Full=DNA-(apurinic or
apyrimidinic site) lyase
gi|1652843|dbj|BAA17762.1| endonuclease III [Synechocystis sp. PCC 6803]
gi|339273447|dbj|BAK49934.1| endonuclease III [Synechocystis sp. PCC 6803]
gi|359271414|dbj|BAL28933.1| endonuclease III [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274584|dbj|BAL32102.1| endonuclease III [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277754|dbj|BAL35271.1| endonuclease III [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451780481|gb|AGF51450.1| endonuclease III [Synechocystis sp. PCC 6803]
Length = 219
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P ++ELL LPG+ K A++V+ + + G+ VDTHV R+ RLG
Sbjct: 108 EFDGEVPQRMEELLTLPGVARKTANVVLAHAFGILAGVTVDTHVKRLSQRLGLT------ 161
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K + P + L +P+ +W + ++ G+ +C +P CG C ++ LCPSA
Sbjct: 162 -KATDPIRIERDLMKLIPQPDWENFSIHIIYHGRAVCAARKPLCGECQLAHLCPSA 216
>gi|258648124|ref|ZP_05735593.1| endonuclease III [Prevotella tannerae ATCC 51259]
gi|260852003|gb|EEX71872.1| endonuclease III [Prevotella tannerae ATCC 51259]
Length = 215
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
+A + + ++G++P++L+EL LPG+G K A++V V ++ + VDTHV R+ +RLG
Sbjct: 93 LAQMLVEAFNGEVPTTLEELTRLPGVGRKTANVVQAVAFHKA-ALAVDTHVFRVSHRLGL 151
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
V + ++P + L+ ++P+E+ P + L+ G+ +CT +RP+C C + LC
Sbjct: 152 VPKTA-----NTPYKVEMALKKYIPEEKVAPSHFWLLLHGRYVCTALRPKCDKCDLRGLC 206
>gi|239827461|ref|YP_002950085.1| endonuclease III [Geobacillus sp. WCH70]
gi|239807754|gb|ACS24819.1| endonuclease III [Geobacillus sp. WCH70]
Length = 223
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K+ I + KY+G++P DEL+ LPG+G K A++V++V + + I VDTHV R+ R
Sbjct: 90 IQKLCAILMEKYNGEVPKDRDELMKLPGVGRKTANVVVSVAF-GIPAIAVDTHVERVSKR 148
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ + +S + E L +PKEEW + ++ FG+ C P+C +C +
Sbjct: 149 LGFC------RWDASVLEVEETLMKKIPKEEWSITHHRMIFFGRYHCKAQSPQCHVCPLL 202
Query: 121 ELC 123
+LC
Sbjct: 203 DLC 205
>gi|145524629|ref|XP_001448142.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415675|emb|CAK80745.1| unnamed protein product [Paramecium tetraurelia]
Length = 278
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 9/115 (7%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L Y G +P + +E + + G+G K+A L + V + V+GI +D ++ RICNR+ P
Sbjct: 162 LAIYKG-MPKTFEETIKIKGVGEKIALLYIQVAFQRVEGIPIDVNMIRICNRV-----PI 215
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K+K SP + R+ L+ +EW IN LVGFGQ IC P +P+C C + ++C
Sbjct: 216 FKEK--SPTKLRKFLESQFEHKEWGEINETLVGFGQQICLP-KPKCDQCKLKDIC 267
>gi|254302476|ref|ZP_04969834.1| DNA-(apurinic or apyrimidinic site) lyase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148322668|gb|EDK87918.1| DNA-(apurinic or apyrimidinic site) lyase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 216
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G++P +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEVPQDMDKLTELAGVGRKTANVVRGDIWGLADGITVDTHVKRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGLVD-------SEDPIKIELELMKIVPKKSWINFSHYLILHGRATCIARRPRCSECEIS 202
Query: 121 ELCPSAFKDSSSPS 134
+ C K S+ +
Sbjct: 203 KYCNYGIKKLSNDN 216
>gi|401679775|ref|ZP_10811699.1| endonuclease III [Veillonella sp. ACP1]
gi|400218902|gb|EJO49773.1| endonuclease III [Veillonella sp. ACP1]
Length = 211
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P D+L+ LPG+G K A++V++V + I VDTHV R+ NRL
Sbjct: 97 ILVEQYHGEVPREFDQLVELPGVGRKTANVVVSVLFGT-PAIAVDTHVFRVANRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+ + LQ +PKE+W + L+ G+ +C +P C C + LCPSA
Sbjct: 151 --KLGIAKTPEEMEQKLQKAIPKEKWSAAHHWLIYHGRRVCKARKPLCETCFLHHLCPSA 208
Query: 127 FK 128
K
Sbjct: 209 GK 210
>gi|294784441|ref|ZP_06749732.1| endonuclease III [Fusobacterium sp. 3_1_27]
gi|294488013|gb|EFG35368.1| endonuclease III [Fusobacterium sp. 3_1_27]
Length = 216
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEIPKDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RP+C C +S
Sbjct: 150 IGLVD-------SEDPIKIELELMKIVPKKSWIDFSHYLILHGRATCIARRPKCSECEIS 202
Query: 121 ELCPSAFKDSSSPS 134
+ C K S+ +
Sbjct: 203 KYCNYGIKKLSNEN 216
>gi|404482921|ref|ZP_11018146.1| endonuclease III [Clostridiales bacterium OBRC5-5]
gi|404344011|gb|EJZ70370.1| endonuclease III [Clostridiales bacterium OBRC5-5]
Length = 209
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
LT + G++PS LD+LL LPG+G K A+++ ++ + I VDTHV RI +LG+
Sbjct: 98 LTDFGGEVPSDLDDLLTLPGVGRKTANVIRGNIFD-LPSIVVDTHVKRITKKLGFT---- 152
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
++ P + L LPK+ W+ N L+ G+TIC R +C +C + + CPSA
Sbjct: 153 ---ESDDPVKIEFELMEILPKDHWIVWNTDLITLGRTICIARREKCDICFLRDDCPSA 207
>gi|303230869|ref|ZP_07317616.1| endonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514629|gb|EFL56624.1| endonuclease III [Veillonella atypica ACS-049-V-Sch6]
Length = 211
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P D+L+ LPG+G K A++V++V + I VDTHV R+ NRL
Sbjct: 97 ILVEQYHGEVPREFDQLVELPGVGRKTANVVVSVLFGT-PAIAVDTHVFRVANRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+ + LQ +PKE+W + L+ G+ +C +P C C + LCPSA
Sbjct: 151 --KLGIAKTPEEMEQKLQKAIPKEKWSAAHHWLIYHGRRVCKARKPLCETCFLHHLCPSA 208
Query: 127 FK 128
K
Sbjct: 209 GK 210
>gi|294792031|ref|ZP_06757179.1| endonuclease III [Veillonella sp. 6_1_27]
gi|294457261|gb|EFG25623.1| endonuclease III [Veillonella sp. 6_1_27]
Length = 211
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P D+L+ LPG+G K A++V++V + I VDTHV R+ NRL
Sbjct: 97 ILVDRYHGEVPREFDQLVELPGVGRKTANVVVSVLFGT-PAIAVDTHVFRVSNRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+ + LQ +PK++W + L+ G+ +C +P C C ++ LCPSA
Sbjct: 151 --KLGIAKTPEEMEQKLQKAIPKKDWAAAHHWLIYHGRRVCKARKPLCNECFLNHLCPSA 208
Query: 127 FK 128
K
Sbjct: 209 GK 210
>gi|340755571|ref|ZP_08692247.1| endonuclease III [Fusobacterium sp. D12]
gi|419841933|ref|ZP_14365293.1| endonuclease III [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
gi|421499588|ref|ZP_15946626.1| endonuclease III [Fusobacterium necrophorum subsp. funduliforme Fnf
1007]
gi|313686224|gb|EFS23059.1| endonuclease III [Fusobacterium sp. D12]
gi|386903594|gb|EIJ68403.1| endonuclease III [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
gi|402269556|gb|EJU18886.1| endonuclease III [Fusobacterium necrophorum subsp. funduliforme Fnf
1007]
Length = 213
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L Y G++P +D+L+ L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSQQLLELYGGEVPQDMDKLVNLAGVGRKTANVVRGEIWGLADGITVDTHVRRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G+V Q+ + RE++++ +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGFV------QEEDPIKIERELMKI-VPKKSWIDFSHYLILQGRDTCIARRPRCNQCEIS 202
Query: 121 ELC 123
E C
Sbjct: 203 EFC 205
>gi|407958273|dbj|BAM51513.1| endonuclease III [Synechocystis sp. PCC 6803]
Length = 212
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P ++ELL LPG+ K A++V+ + + G+ VDTHV R+ RLG
Sbjct: 101 EFDGEVPQRMEELLTLPGVARKTANVVLAHAFGILAGVTVDTHVKRLSQRLGLT------ 154
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K + P + L +P+ +W + ++ G+ +C +P CG C ++ LCPSA
Sbjct: 155 -KATDPIRIERDLMKLIPQPDWENFSIHIIYHGRAVCAARKPLCGECQLAHLCPSA 209
>gi|256846729|ref|ZP_05552185.1| endonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717949|gb|EEU31506.1| endonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 216
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEIPKDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RP+C C +S
Sbjct: 150 MGLVD-------SEDPIKIELELMKIVPKKSWIDFSHYLILHGRATCIARRPKCSECEIS 202
Query: 121 ELCPSAFKDSSSPS 134
+ C K S+ +
Sbjct: 203 KYCNYGVKKLSNEN 216
>gi|392394047|ref|YP_006430649.1| DNA-(apurinic or apyrimidinic site) lyase [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390525125|gb|AFM00856.1| endonuclease III [Desulfitobacterium dehalogenans ATCC 51507]
Length = 208
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + KY+G++P S++ L LPG+G K A++V++ +N + VDTHV R+ NRLG S
Sbjct: 93 ILIEKYNGEVPDSMEALTQLPGVGRKTANVVLSNAYN-IPAFAVDTHVLRVSNRLGLAS- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
++P+ + L +P+ +W+ + L+ G+ IC P+C C +S LCPS
Sbjct: 151 ------GTNPDLIEKQLMNSIPRSQWIQAHHWLIWHGRRICAARNPKCSECPLSPLCPST 204
Query: 127 F 127
Sbjct: 205 L 205
>gi|411116898|ref|ZP_11389385.1| DNA-(apurinic or apyrimidinic site) lyase [Oscillatoriales
cyanobacterium JSC-12]
gi|410713001|gb|EKQ70502.1| DNA-(apurinic or apyrimidinic site) lyase [Oscillatoriales
cyanobacterium JSC-12]
Length = 235
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 7/120 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + +Y G++P +++ELL LPG+ K +++V+ +N G+ VDTHV R+ RLG
Sbjct: 103 LIMERYGGEVPQTMEELLTLPGVARKTSNVVLANAFNINMGVTVDTHVKRLSYRLGLT-- 160
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K + P + + L LP+ +W + L+ G+ +C +P C C++++LCPSA
Sbjct: 161 -----KHTDPIKVEQDLMKLLPRPDWENWSIRLIYHGRAVCNARKPDCDRCTLADLCPSA 215
>gi|423137746|ref|ZP_17125389.1| endonuclease III [Fusobacterium nucleatum subsp. animalis F0419]
gi|371959215|gb|EHO76907.1| endonuclease III [Fusobacterium nucleatum subsp. animalis F0419]
Length = 216
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G++P +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEVPQDMDKLTELAGVGRKTANVVRGDIWGLADGITVDTHVKRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGLVD-------SEDPIKIELELMKIVPKKSWINFSHYLILHGRATCIARRPRCSECEIS 202
Query: 121 ELCPSAFKDSSSPS 134
C K S+ +
Sbjct: 203 RYCNYGIKKLSNEN 216
>gi|336401809|ref|ZP_08582566.1| endonuclease III [Fusobacterium sp. 21_1A]
gi|336160407|gb|EGN63455.1| endonuclease III [Fusobacterium sp. 21_1A]
Length = 216
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G++P +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEVPQDMDKLTELAGVGRKTANVVRGDIWGLADGITVDTHVKRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGLVD-------SEDPIKIELELMKIVPKKSWINFSHYLILHGRATCIARRPRCSECEIS 202
Query: 121 ELCPSAFKDSSSPS 134
C K S+ +
Sbjct: 203 RYCNYGIKKLSNEN 216
>gi|373114020|ref|ZP_09528237.1| endonuclease III [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
gi|371652907|gb|EHO18313.1| endonuclease III [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
Length = 213
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L Y G++P +D+L+ L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSQQLLELYGGEVPQDMDKLVNLAGVGRKTANVVRGEIWGLADGITVDTHVRRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G+V Q+ + RE++++ +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGFV------QEEDPIKIERELMKI-VPKKSWIDFSHYLILQGRDTCIARRPRCNQCEIS 202
Query: 121 ELC 123
E C
Sbjct: 203 EFC 205
>gi|303228390|ref|ZP_07315223.1| endonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|302516892|gb|EFL58801.1| endonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 211
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P D+L+ LPG+G K A++V++V + I VDTHV R+ NRL
Sbjct: 97 ILVEQYHGEVPREFDQLVELPGVGRKTANVVVSVLFGT-PAIAVDTHVFRVANRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+ + LQ +PKE+W + L+ G+ +C +P C C + LCPSA
Sbjct: 151 --KLGIAKTPEEMEQKLQKAIPKEKWSAAHHWLIYHGRRVCKARKPLCETCFLHHLCPSA 208
Query: 127 FK 128
K
Sbjct: 209 GK 210
>gi|448423374|ref|ZP_21581931.1| endonuclease III, partial [Halorubrum terrestre JCM 10247]
gi|445683666|gb|ELZ36057.1| endonuclease III, partial [Halorubrum terrestre JCM 10247]
Length = 219
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+DG++P ++ EL L G+G K A++V+ G + V+GI VDTHV R+ RLG +
Sbjct: 106 HDGEVPDTMSELTDLAGVGRKTANVVLQHGHDVVEGIVVDTHVQRLTRRLGITEE----- 160
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
PE + L +P+ +W L++ G+ CT I P C C+++++C
Sbjct: 161 --ERPEAIEQDLLEVVPESDWQQFTHLMIDHGRATCTAINPDCADCALADVC 210
>gi|269123280|ref|YP_003305857.1| endonuclease III [Streptobacillus moniliformis DSM 12112]
gi|268314606|gb|ACZ00980.1| endonuclease III [Streptobacillus moniliformis DSM 12112]
Length = 215
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 7/133 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K A I + KY+G +P +++EL+ LPG+G K A++++ W +GI VDTHV R+ N
Sbjct: 90 LKANAKILIEKYNGVLPRTMEELIKLPGVGRKTANVLLGDLWGIREGIVVDTHVRRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G+V + RE++++ +PK+ W + L+ G+ C RP+C C +
Sbjct: 150 IGFVDND------NVEIIERELMKI-IPKKYWYEYSHFLILHGRDKCIARRPKCHECEIK 202
Query: 121 ELCPSAFKDSSSP 133
LC K+
Sbjct: 203 HLCKYNEKNKEKE 215
>gi|374340010|ref|YP_005096746.1| endonuclease III [Marinitoga piezophila KA3]
gi|372101544|gb|AEX85448.1| endonuclease III [Marinitoga piezophila KA3]
Length = 210
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K I + KY+G+IP + +EL+ LPG+G K A+++++V + I VDTHV R+ NR+G
Sbjct: 93 KTCQILVEKYNGEIPQTREELMELPGVGRKTANVILSVAFGK-DAIAVDTHVFRVANRIG 151
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+ K +T E L +PK W + L+ G+ IC P+C +C + EL
Sbjct: 152 LANAKDVK-------KTEEDLMKVIPKNLWGQAHHWLIYHGRNICKARNPKCDICPIKEL 204
Query: 123 C 123
C
Sbjct: 205 C 205
>gi|443326787|ref|ZP_21055429.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Xenococcus sp. PCC 7305]
gi|442793580|gb|ELS03025.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Xenococcus sp. PCC 7305]
Length = 222
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+T++D ++P ++ ELL LPG+ K A++V+ G+ ++G+ VDTHV RI NRLG
Sbjct: 106 VTEFDNNVPQTMPELLQLPGVARKTANVVLAHGYGILEGVTVDTHVKRISNRLGLT---- 161
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K +P + L LP+ +W + ++ G+ +C +P C C ++ LCP
Sbjct: 162 ---KNDNPVKIERDLMKILPQPDWENYSIRIIYHGRAVCKARKPLCDQCQLAHLCP 214
>gi|336420111|ref|ZP_08600353.1| endonuclease III [Fusobacterium sp. 11_3_2]
gi|336162073|gb|EGN65062.1| endonuclease III [Fusobacterium sp. 11_3_2]
Length = 192
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G++P +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 66 IKKCSEQLLEKYNGEVPQDMDKLTELAGVGRKTANVVRGDIWGLADGITVDTHVKRLSNL 125
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 126 IGLVD-------SEDPIKIELELMKIVPKKSWINFSHYLILHGRATCIARRPRCSECEIS 178
Query: 121 ELCPSAFKDSSSPS 134
+ C K S+ +
Sbjct: 179 KYCNYGIKKLSNEN 192
>gi|237740957|ref|ZP_04571438.1| endonuclease III [Fusobacterium sp. 4_1_13]
gi|229431001|gb|EEO41213.1| endonuclease III [Fusobacterium sp. 4_1_13]
Length = 216
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEIPKDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RP+C C +S
Sbjct: 150 IGLVD-------SEDPIKIELELMKIVPKKSWIDFSHYLILHGRATCIARRPKCSECEIS 202
Query: 121 ELCPSAFKDSSSPS 134
+ C K S+ +
Sbjct: 203 KYCNYGVKKLSNEN 216
>gi|376261490|ref|YP_005148210.1| endonuclease III [Clostridium sp. BNL1100]
gi|373945484|gb|AEY66405.1| endonuclease III [Clostridium sp. BNL1100]
Length = 210
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I KY+G IP +++ELL LPG+G K A+L + + QG+ VDTH R+ NR G
Sbjct: 96 IITEKYNGKIPDNMEELLELPGVGRKTANLYL-YEIHGKQGVVVDTHAKRLSNRTGLT-- 152
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K PE+ LQ +PK++W LV G+ +C +P C C ++ LC
Sbjct: 153 -----KNEDPEKIEYDLQKIIPKDKWADFCHKLVFHGRAVCNARKPECEKCEMNHLC 204
>gi|315425726|dbj|BAJ47382.1| endonuclease III [Candidatus Caldiarchaeum subterraneum]
gi|343484521|dbj|BAJ50175.1| endonuclease III [Candidatus Caldiarchaeum subterraneum]
Length = 217
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 8/135 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I K G +P + ELL LPG+GPK A +V+++ +N + I VDTHV + R
Sbjct: 91 IKQLAKIVYGKLGGRVPDNRAELLKLPGVGPKSADIVLSIAFNRPE-IAVDTHVETVAKR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + E+ ++ L ++ IN L V FG+ IC RPRC +C ++
Sbjct: 150 LGIADG------KAGYEEVKKALTTLSKPDDIRLINHLFVKFGREICRRPRPRCSLCPIT 203
Query: 121 ELCPSAFKDSSSPSS 135
E C +++ +P S
Sbjct: 204 EYC-RYYREVIAPVS 217
>gi|254391703|ref|ZP_05006900.1| endonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294813393|ref|ZP_06772036.1| Endonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|197705387|gb|EDY51199.1| endonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|294325992|gb|EFG07635.1| Endonuclease III [Streptomyces clavuligerus ATCC 27064]
Length = 284
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++PS L++L+ LPG+G K A +V+ + V GI VDTH R+ R W Q
Sbjct: 129 RFGGEVPSRLEDLVSLPGVGRKTAFVVLGNAFG-VPGITVDTHFGRLVRRWKWTEQ---- 183
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
PE+ + PK EW ++ ++ G+ IC +P CG C ++ LCPS +
Sbjct: 184 ---EDPEKVEAEIAKIFPKSEWTMLSHRVIFHGRRICHARKPACGACPIAHLCPSYGEGE 240
Query: 131 SSPSSKSR 138
+ P ++
Sbjct: 241 TDPEKAAK 248
>gi|357058022|ref|ZP_09118879.1| endonuclease III [Selenomonas infelix ATCC 43532]
gi|355374599|gb|EHG21893.1| endonuclease III [Selenomonas infelix ATCC 43532]
Length = 210
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I L +Y G++P+ + L LPG+G K A++VM+V ++ V I VDTHV R+ NRL
Sbjct: 97 ILLQEYGGEVPADFEALQKLPGVGRKTANVVMSVAFH-VPAIAVDTHVFRVANRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
R +P + + LQ +P+E+W + L+ G+ +C +P CG C ++++CPS+
Sbjct: 151 --RLAVGKTPLEVEKGLQKAIPREDWSDAHHWLILHGRQLCKARKPLCGECPLAQVCPSS 208
>gi|152989812|ref|YP_001355534.1| endonuclease III [Nitratiruptor sp. SB155-2]
gi|151421673|dbj|BAF69177.1| endonuclease III [Nitratiruptor sp. SB155-2]
Length = 221
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 8/111 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++D +P +L+ L+ + GIG K A +V+ + + VDTHVHRICN G V+
Sbjct: 107 RFDRAVPDTLEALVSIKGIGHKTAKIVLENAFGK-PYVAVDTHVHRICNIWGLVN----- 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE 121
T SP++T + L+ L +E+ +N +LV FGQTIC P RP C C + E
Sbjct: 161 --TVSPQETDKRLEKMLKEEDKRGLNKILVSFGQTICKPQRPHCEECPLKE 209
>gi|294793896|ref|ZP_06759033.1| endonuclease III [Veillonella sp. 3_1_44]
gi|294455466|gb|EFG23838.1| endonuclease III [Veillonella sp. 3_1_44]
Length = 211
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P D+L+ LPG+G K A++V++V + I VDTHV R+ NRL
Sbjct: 97 ILVDRYHGEVPREFDQLVELPGVGRKTANVVVSVLFGT-PAIAVDTHVFRVSNRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+ + LQ +PK++W + L+ G+ +C +P C C ++ LCPSA
Sbjct: 151 --KLGIAKTPEEMEQKLQKAIPKKDWAAAHHWLIYHGRRLCKARKPLCNECFLNHLCPSA 208
Query: 127 FK 128
K
Sbjct: 209 GK 210
>gi|170079050|ref|YP_001735688.1| endonuclease III [Synechococcus sp. PCC 7002]
gi|169886719|gb|ACB00433.1| endonuclease III [Synechococcus sp. PCC 7002]
Length = 220
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
++G +P +++ELL LPG+ K A++V+ + G+ VDTHV R+ NRL R
Sbjct: 107 FNGKVPQTMEELLTLPGVARKTANVVLAHAFGICAGVTVDTHVKRLSNRL-------RLT 159
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K+ +P Q L +P+ EW + L+ G+ +C +P+C +C+++ LCPSA
Sbjct: 160 KSENPVQIERDLMKLIPQPEWENWSIRLIYHGRAVCNARKPQCEVCAIANLCPSA 214
>gi|374302076|ref|YP_005053715.1| endonuclease III [Desulfovibrio africanus str. Walvis Bay]
gi|332555012|gb|EGJ52056.1| endonuclease III [Desulfovibrio africanus str. Walvis Bay]
Length = 219
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + K+ G++P ++ E++ +PG+ K A++V++ V+GI VDTHV R+ RLG
Sbjct: 99 ANLVMDKHGGEMPRTMAEMIEIPGVARKTANIVLSTALGVVEGIAVDTHVKRLSFRLGLT 158
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
++ PE+ L +E W +N LLV G+ +C PRC +C ++++CP
Sbjct: 159 -------ESDKPERIERDLMEAFEREIWGEVNHLLVQHGRAVCQARLPRCSVCLLADVCP 211
>gi|269798164|ref|YP_003312064.1| endonuclease III [Veillonella parvula DSM 2008]
gi|282850393|ref|ZP_06259772.1| endonuclease III [Veillonella parvula ATCC 17745]
gi|416998769|ref|ZP_11939438.1| endonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|269094793|gb|ACZ24784.1| endonuclease III [Veillonella parvula DSM 2008]
gi|282579886|gb|EFB85290.1| endonuclease III [Veillonella parvula ATCC 17745]
gi|333976922|gb|EGL77781.1| endonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 211
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P D+L+ LPG+G K A++V++V + I VDTHV R+ NRL
Sbjct: 97 ILVDRYHGEVPREFDQLVELPGVGRKTANVVVSVLFGT-PAIAVDTHVFRVSNRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+ + LQ +PK++W + L+ G+ +C +P C C ++ LCPSA
Sbjct: 151 --KLGIAKTPEEMEQKLQKAIPKKDWAAAHHWLIYHGRRLCKARKPLCNECFLNHLCPSA 208
Query: 127 FK 128
K
Sbjct: 209 GK 210
>gi|326441894|ref|ZP_08216628.1| putative endonuclease III [Streptomyces clavuligerus ATCC 27064]
Length = 253
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++PS L++L+ LPG+G K A +V+ + V GI VDTH R+ R W Q
Sbjct: 98 RFGGEVPSRLEDLVSLPGVGRKTAFVVLGNAFG-VPGITVDTHFGRLVRRWKWTEQ---- 152
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
PE+ + PK EW ++ ++ G+ IC +P CG C ++ LCPS +
Sbjct: 153 ---EDPEKVEAEIAKIFPKSEWTMLSHRVIFHGRRICHARKPACGACPIAHLCPSYGEGE 209
Query: 131 SSPSSKSR 138
+ P ++
Sbjct: 210 TDPEKAAK 217
>gi|262038946|ref|ZP_06012286.1| endonuclease III [Leptotrichia goodfellowii F0264]
gi|261747027|gb|EEY34526.1| endonuclease III [Leptotrichia goodfellowii F0264]
Length = 224
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A L +Y+G IP +DEL+ L G+G K A++V+ W +GI VDTHV R+ R+G
Sbjct: 94 AEQVLNEYNGKIPKKMDELVKLAGVGRKTANVVLGEVWGISEGIVVDTHVKRLSKRMGLT 153
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE 121
K+ +PE L +PK+ W + L+ +G+ + T I P+C +C +++
Sbjct: 154 -------KSDNPEIIERELMKIVPKKYWFVFSHYLILYGREVSTAINPKCDICIINK 203
>gi|294945932|ref|XP_002784887.1| endonuclease iii, putative [Perkinsus marinus ATCC 50983]
gi|239898152|gb|EER16683.1| endonuclease iii, putative [Perkinsus marinus ATCC 50983]
Length = 192
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 56/88 (63%), Gaps = 7/88 (7%)
Query: 20 LDELLLLPGIGPKMAHLVMNVGWNNVQ-GICVDTHVHRICNRLGWVSQPGRKQKTSSPEQ 78
+++LL LPG+GPKMA LVM +G + GICVDTHVHRI LGW + +PE
Sbjct: 1 MEDLLSLPGVGPKMAVLVMEIGHGHRDAGICVDTHVHRIAAMLGWT------KNAKTPEA 54
Query: 79 TREVLQLWLPKEEWVPINPLLVGFGQTI 106
TR+ L+ LP + W +N LLVG GQ +
Sbjct: 55 TRQQLEARLPLKVWPDVNLLLVGLGQMV 82
>gi|210623502|ref|ZP_03293847.1| hypothetical protein CLOHIR_01797 [Clostridium hiranonis DSM 13275]
gi|210153560|gb|EEA84566.1| hypothetical protein CLOHIR_01797 [Clostridium hiranonis DSM 13275]
Length = 213
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + I Y+ ++P SL+EL+ LPG+G K A +V++ + + I VDTHV RI NR
Sbjct: 91 IKMTSEILYNDYNSEVPDSLEELIKLPGVGRKTAGVVLSNAFGH-PAIPVDTHVFRIVNR 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V +TS+PE+T L LPKE W + L + G+ +C +P C C +
Sbjct: 150 IGIV-------ETSTPEKTEFELMKVLPKERWSKAHHLFIFLGRRMCKARKPECTDCPIK 202
Query: 121 ELC 123
+ C
Sbjct: 203 KHC 205
>gi|291452913|ref|ZP_06592303.1| endonuclease III [Streptomyces albus J1074]
gi|421745023|ref|ZP_16182897.1| endonuclease III [Streptomyces sp. SM8]
gi|291355862|gb|EFE82764.1| endonuclease III [Streptomyces albus J1074]
gi|406686562|gb|EKC90709.1| endonuclease III [Streptomyces sp. SM8]
Length = 305
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P LD+L+ LPG+G K A +V+ + V GI VDTH R+ R W +
Sbjct: 155 RFGGEVPGKLDDLVSLPGVGRKTAFVVLGNAFG-VPGITVDTHFGRLVRRWKWTEE---- 209
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
+ PE+ + PK++W ++ ++ G+ IC +P CG C ++ LCPS +
Sbjct: 210 ---TDPEKVEAAVAAIFPKKDWTMLSHRVIFHGRRICHSRKPACGACPIAPLCPSYGEGE 266
Query: 131 SSPSSKSRK 139
+ P K+RK
Sbjct: 267 TDP-EKARK 274
>gi|149923815|ref|ZP_01912206.1| endonuclease III, putative [Plesiocystis pacifica SIR-1]
gi|149815327|gb|EDM74871.1| endonuclease III, putative [Plesiocystis pacifica SIR-1]
Length = 270
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+++ A + ++DG++P + DEL+ LPG K A+LV+ V + GI VDTHV+R+ R
Sbjct: 98 IRQCAAAIVERHDGEVPQTHDELVALPGASHKTANLVLGVAFGIASGIVVDTHVNRVSAR 157
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG V P K+ P + L +++W+ ++ L+ G+ +C P C C V+
Sbjct: 158 LGLV--PAGKK----PPVVEKALCKISSEDDWINLSHRLILHGRHLCKSKAPDCRRCPVN 211
Query: 121 ELCPSAFK 128
ELCPSA +
Sbjct: 212 ELCPSATE 219
>gi|359150463|ref|ZP_09183301.1| endonuclease III [Streptomyces sp. S4]
Length = 305
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P LD+L+ LPG+G K A +V+ + V GI VDTH R+ R W +
Sbjct: 155 RFGGEVPGKLDDLVSLPGVGRKTAFVVLGNAFG-VPGITVDTHFGRLVRRWKWTEE---- 209
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
+ PE+ + PK++W ++ ++ G+ IC +P CG C ++ LCPS +
Sbjct: 210 ---TDPEKVEAAVAAIFPKKDWTMLSHRVIFHGRRICHSRKPACGACPIAPLCPSYGEGE 266
Query: 131 SSPSSKSRK 139
+ P K+RK
Sbjct: 267 TDP-EKARK 274
>gi|296328749|ref|ZP_06871263.1| DNA-(apurinic or apyrimidinic site) lyase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|296154084|gb|EFG94888.1| DNA-(apurinic or apyrimidinic site) lyase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 214
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSEQLLEKYNGEIPQDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRLTNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGLVD-------SEDPVKIELELMKIVPKKSWIVFSHYLILHGRATCIARRPRCLECEIS 202
Query: 121 ELCPSAFKDSSS 132
+ C K S
Sbjct: 203 KYCNYGIKKLSE 214
>gi|258510450|ref|YP_003183884.1| endonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477176|gb|ACV57495.1| endonuclease III [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 220
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+ A I + +Y G++P S D L+ LPG+G K A++V++ + V VDTHV R+ NR+G
Sbjct: 94 ETARILVDEYGGEVPKSRDRLMELPGVGRKTANVVVSNAYG-VPAFAVDTHVQRVTNRIG 152
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
K++ P +T + + LP E W + L+ G+ +CT +P+C +C V++L
Sbjct: 153 LA-------KSNDPLKTEQQVCAKLPPELWTKAHHALILHGRRVCTARKPKCHICPVADL 205
Query: 123 CPSA 126
C A
Sbjct: 206 CQCA 209
>gi|220906788|ref|YP_002482099.1| endonuclease III [Cyanothece sp. PCC 7425]
gi|219863399|gb|ACL43738.1| endonuclease III [Cyanothece sp. PCC 7425]
Length = 230
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y G +P +D+LL LPG+ K A++V+ G+ G+ VDTHV R+ RLG
Sbjct: 108 YGGQVPKVMDDLLTLPGVARKTANVVLAHGFGINMGVTVDTHVKRLSYRLGLTEH----- 162
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
S P + L LP+ +W + L+ G+ +C +P C C +++LCPSAF+ +
Sbjct: 163 --SDPVKVERDLIRLLPQPDWENWSIRLIYHGRQVCKARKPDCDRCELADLCPSAFQVTP 220
Query: 132 SP 133
+P
Sbjct: 221 AP 222
>gi|336180117|ref|YP_004585492.1| endonuclease III [Frankia symbiont of Datisca glomerata]
gi|334861097|gb|AEH11571.1| endonuclease III [Frankia symbiont of Datisca glomerata]
Length = 243
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P LD+L+ LPG+G K A++V+ ++ GI VDTHV R+ RLG +
Sbjct: 114 RFDGNVPPRLDDLVTLPGVGRKTANVVLGHIFDQ-PGITVDTHVGRLSRRLGLTTN---- 168
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
+ P + L L + ++ + L+ G+ +C RP CG+C ++ LCPS
Sbjct: 169 ---TDPVRVESDLAKLLERRDYTIASDRLIFHGRRVCHARRPACGVCGIARLCPSFGLGV 225
Query: 131 SSPSSKSR 138
++P+ +R
Sbjct: 226 TTPAQAAR 233
>gi|410463117|ref|ZP_11316653.1| endonuclease III [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409983751|gb|EKO40104.1| endonuclease III [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 211
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + ++ G IP+S+DEL LPG+ K A++V++ GI VDTHV R+ RLG
Sbjct: 95 AKLLVERHGGRIPASMDELTALPGVARKTANIVLSNALGVNVGIAVDTHVRRLSFRLGLT 154
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ + +P + L E + IN LLV FG+ +C RPRCG C ++++CP
Sbjct: 155 T-------SENPVIIEKDLMPLFAPEAYGEINHLLVLFGREVCKARRPRCGDCVLNDVCP 207
>gi|315917193|ref|ZP_07913433.1| endonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691068|gb|EFS27903.1| endonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 213
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L Y G++P +++L+ L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSQQLLELYHGEVPQDMEQLVNLAGVGRKTANVVRGEIWGLADGITVDTHVRRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G+V K P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGFV-------KEEDPIRIERELMKIVPKKSWIDFSHYLILQGRDTCIARRPRCNQCEIS 202
Query: 121 ELC 123
E C
Sbjct: 203 EFC 205
>gi|347754211|ref|YP_004861775.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Chloracidobacterium thermophilum B]
gi|347586729|gb|AEP11259.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus
Chloracidobacterium thermophilum B]
Length = 248
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 68/118 (57%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++ G++P ++++LL LPG+ K A++V+ + G+ VDTHV R+ RLG+ + P
Sbjct: 135 VERFGGEVPRTMEDLLTLPGVARKTANVVLGNAFGQAPGVVVDTHVTRLARRLGFSAAP- 193
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+PE+ L +P++ +V + + G+ +C P+C C +++LCPSA
Sbjct: 194 ------TPEKIERDLMAIVPRQHYVMLPHWFIFHGRAVCRARNPQCQSCILADLCPSA 245
>gi|254432679|ref|ZP_05046382.1| endonuclease III [Cyanobium sp. PCC 7001]
gi|197627132|gb|EDY39691.1| endonuclease III [Cyanobium sp. PCC 7001]
Length = 221
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 7/120 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ L ++ G++P S++ELL LPG+ K A +V+ + G+ VDTHV R+ RL
Sbjct: 100 LLLERHGGEVPRSMEELLQLPGVARKTASVVLAWCYGINAGVTVDTHVSRLAQRL----- 154
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
R + S P + L +P+E+W ++ L+ G+ +C +P C CS+++LCPSA
Sbjct: 155 --RLSRHSEPRRIEPDLMKLVPREQWQTLSIRLIFHGRAVCAARKPLCAACSLADLCPSA 212
>gi|19703409|ref|NP_602971.1| endonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19713479|gb|AAL94270.1| Endonuclease III [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 201
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L KY+G+IP +D+L L G+G K A++V W GI VDTHV R+ N
Sbjct: 77 IKKCSEQLLEKYNGEIPQDMDKLTELAGVGRKTANVVRGEVWGLADGITVDTHVKRLTNL 136
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V + P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 137 IGLVD-------SEDPVKIELELMKIVPKKSWIVFSHYLILHGRATCIARRPRCLECEIS 189
Query: 121 ELCPSAFKDSSS 132
+ C K S
Sbjct: 190 KYCNYGIKKLSE 201
>gi|289706178|ref|ZP_06502542.1| endonuclease III [Micrococcus luteus SK58]
gi|289557090|gb|EFD50417.1| endonuclease III [Micrococcus luteus SK58]
Length = 268
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++DG++P+ L++L+ LPG+G K A +V+ + GI VDTHV R+ RLG+ +
Sbjct: 112 VARHDGEVPARLEDLVALPGVGRKTAFVVLGNAFGQ-PGITVDTHVGRLARRLGFTDE-- 168
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+ P + + P+ +W ++ L+ G+ +C RP CG C ++ CPS
Sbjct: 169 -----TDPVKVEHAVGALFPRRDWTMLSHRLIFHGRRVCHARRPACGACPIARWCPSYGA 223
Query: 129 DSSSPS 134
+ P
Sbjct: 224 GETDPE 229
>gi|303326362|ref|ZP_07356805.1| endonuclease III [Desulfovibrio sp. 3_1_syn3]
gi|345892105|ref|ZP_08842929.1| endonuclease III [Desulfovibrio sp. 6_1_46AFAA]
gi|302864278|gb|EFL87209.1| endonuclease III [Desulfovibrio sp. 3_1_syn3]
gi|345047516|gb|EGW51380.1| endonuclease III [Desulfovibrio sp. 6_1_46AFAA]
Length = 227
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
++ +P +L+ L+ LPG+ K A++V+ + +G+ VDTHV RI +RLG Q
Sbjct: 105 FECRVPQALEHLVTLPGVARKTANVVLFGAFGINEGLAVDTHVKRISHRLGLTDQ----- 159
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAF--KD 129
+ P L P++EW +N +V FG+ +C +PRCG C ++ CP K+
Sbjct: 160 --TDPVAVERDLMALFPQQEWGDVNHRMVWFGRDVCHARKPRCGECEMASFCPRLEPPKE 217
Query: 130 SSSPSSKSRK 139
S +S R+
Sbjct: 218 KSGRNSAGRR 227
>gi|218442082|ref|YP_002380411.1| endonuclease III [Cyanothece sp. PCC 7424]
gi|218174810|gb|ACK73543.1| endonuclease III [Cyanothece sp. PCC 7424]
Length = 221
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
++++ G++P +++LL LPG+ K A++V+ G+ +QG+ VDTHV R+ RLG
Sbjct: 105 VSEFGGEVPQQMEKLLSLPGVARKTANVVLAHGFGIIQGVTVDTHVKRLSGRLGLT---- 160
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K + P + L LP+ +W + ++ G+ +C +P C C ++ LCPSA
Sbjct: 161 ---KETDPIKIERDLMTLLPQPDWENFSIRIIYHGRAVCKARKPDCDRCKLAHLCPSA 215
>gi|238019075|ref|ZP_04599501.1| hypothetical protein VEIDISOL_00937 [Veillonella dispar ATCC 17748]
gi|237864330|gb|EEP65620.1| hypothetical protein VEIDISOL_00937 [Veillonella dispar ATCC 17748]
Length = 211
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P D+L+ LPG+G K A++V++V + I VDTHV R+ NRL
Sbjct: 97 ILVEQYHGEVPREFDQLVELPGVGRKTANVVVSVLFGT-PAIAVDTHVFRVANRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+ + LQ +PKE+W + L+ G+ +C +P C C ++ +CPSA
Sbjct: 151 --KLGIAKTPEEMEKKLQKAIPKEDWAAAHHWLIYHGRKLCKARKPLCEECFLNHVCPSA 208
Query: 127 FK 128
K
Sbjct: 209 GK 210
>gi|328951624|ref|YP_004368959.1| endonuclease III [Marinithermus hydrothermalis DSM 14884]
gi|328451948|gb|AEB12849.1| endonuclease III [Marinithermus hydrothermalis DSM 14884]
Length = 221
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 8/123 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A + + ++ G++P L+ LPG+G K A +V+ + + GI VDTH+ R+ RL
Sbjct: 103 RLAQMLVERHGGEVPRDKQALMELPGVGWKTATVVLGAAFG-IPGIAVDTHLARLAKRL- 160
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+SQ +PE+ L+ + P+E WV ++ L+ G+ +CT RPRC C ++E
Sbjct: 161 CLSQ------ARTPERIGAELEQYFPRERWVFVHHALILHGRYVCTARRPRCEACVLAEA 214
Query: 123 CPS 125
CPS
Sbjct: 215 CPS 217
>gi|403717274|ref|ZP_10942592.1| endonuclease III [Kineosphaera limosa NBRC 100340]
gi|403209249|dbj|GAB97275.1| endonuclease III [Kineosphaera limosa NBRC 100340]
Length = 234
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K+A + ++DG +P + +L+ LPG+G K A++V+ + V GI VDTHV R+ R
Sbjct: 81 ITKLAGQLVQRFDGQVPGRMRDLVTLPGVGRKTANVVLGNAFG-VPGITVDTHVGRLVRR 139
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
GW + + P + + L + +W + +L+ G+ C RP CG C V+
Sbjct: 140 FGWTEE-------TDPVKVEHAIGELLVRRDWTQASHVLIFHGRRTCHAKRPACGACPVA 192
Query: 121 ELCPSAFKDSSSPSSKSR 138
+ CPS + P + +R
Sbjct: 193 KWCPSFGIGVTDPVAAAR 210
>gi|399889193|ref|ZP_10775070.1| endonuclease III [Clostridium arbusti SL206]
Length = 214
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 69/115 (60%), Gaps = 8/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L Y+ ++PS++++L+ LPG+G K A++VM+ +N + I VDTHV R+ R+G+ S
Sbjct: 97 LFDYNSEVPSAMEDLIKLPGVGRKTANVVMSNAFN-IPAIAVDTHVFRVSKRIGFAS--- 152
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P + E L+ +PK+ W + L+ G+ IC +P+C +C +SE C
Sbjct: 153 ----GDTPLKVEEELRKVIPKKLWSNAHHYLIWHGRQICKSRKPQCEICPISEYC 203
>gi|317058715|ref|ZP_07923200.1| endonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684391|gb|EFS21226.1| endonuclease III [Fusobacterium sp. 3_1_5R]
Length = 213
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK + L Y G++P +++L+ L G+G K A++V W GI VDTHV R+ N
Sbjct: 90 IKKCSQQLLELYHGEVPQDMEQLVNLAGVGRKTANVVRGEIWGLADGITVDTHVRRLSNL 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G+V K P + L +PK+ W+ + L+ G+ C RPRC C +S
Sbjct: 150 IGFV-------KEEDPIRIERELMKIVPKKSWIDFSHYLILQGRDTCIARRPRCNQCEIS 202
Query: 121 ELC 123
E C
Sbjct: 203 EFC 205
>gi|354568904|ref|ZP_08988065.1| endonuclease III [Fischerella sp. JSC-11]
gi|353539416|gb|EHC08903.1| endonuclease III [Fischerella sp. JSC-11]
Length = 240
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 2 KKIAPIC---LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRIC 58
K I C + ++ G++P + +LLLLPG+ K A++V+ + G+ VDTHV R+
Sbjct: 95 KNIQAACRMIVNEFSGEVPKDMQQLLLLPGVARKTANVVLAHAFGINAGVTVDTHVKRLS 154
Query: 59 NRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCS 118
RLG + P + L LP+ +W + L+ G+ +C P C C
Sbjct: 155 QRLGLTEH-------TEPIHIEQDLMRLLPQPDWENWSIRLIYHGRAVCKARNPACAACE 207
Query: 119 VSELCPSA---FK-DSSSPSSKSRKSAQK 143
+++LCPSA FK +S+ K R AQK
Sbjct: 208 LADLCPSANGEFKGESTKQKRKERSQAQK 236
>gi|304439856|ref|ZP_07399750.1| endonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371595|gb|EFM25207.1| endonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 210
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 69/119 (57%), Gaps = 8/119 (6%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
+ + + +Y G++P++++EL+ LPG+G K A++V + + + I VDTHV R+ NR+G V
Sbjct: 96 SKMIIDEYGGEVPNTIEELVKLPGVGKKTANVVASNCFG-IPAIAVDTHVFRVTNRIGIV 154
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
++ +PE+T E L + K W + L++ G+ C P CG+C V E C
Sbjct: 155 NE-------KTPEKTEEALMKRIDKNMWTKAHHLIIFHGRRRCMARNPDCGLCEVREYC 206
>gi|226225941|ref|YP_002760047.1| putative DNA glycosylase/AP lyase [Gemmatimonas aurantiaca T-27]
gi|226089132|dbj|BAH37577.1| putative DNA glycosylase/AP lyase [Gemmatimonas aurantiaca T-27]
Length = 246
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
+A + + GD+P S+ EL+ LPG+G K A++++ + +GI VDTHV R+ RLG
Sbjct: 127 MAKALVRDHAGDVPRSIAELVPLPGVGRKTANVILGNAFGINEGIVVDTHVQRLARRLGL 186
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+P P L P++ W ++ LL+ G+ C +P C C ++++C
Sbjct: 187 TREP-------DPVGIERELMPLFPRDAWAQLSHLLIWHGRRTCFARKPACDRCVLADVC 239
Query: 124 PSAFKDS 130
PSA D+
Sbjct: 240 PSAGIDA 246
>gi|86742964|ref|YP_483364.1| endonuclease III [Frankia sp. CcI3]
gi|86569826|gb|ABD13635.1| putative Endonuclease III [Frankia sp. CcI3]
Length = 178
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I ++DG++P SL L+ LPG+G K A++V+ ++ + GI VDTHV R+ R G
Sbjct: 39 IGAALTERFDGEVPRSLAALVTLPGVGRKTANVVLGHAFD-MPGITVDTHVGRLSRRFGL 97
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+Q + P + L + + +W + ++ G+ IC RP CG C ++ LC
Sbjct: 98 TTQ-------TDPVKVESDLAALIEQRDWTIASDRMIFHGRRICHSRRPACGACGLARLC 150
Query: 124 PSAFKDSSSPSSKSR 138
PS + P+ +R
Sbjct: 151 PSFGLGPTEPAEAAR 165
>gi|425472796|ref|ZP_18851637.1| Endonuclease III [Microcystis aeruginosa PCC 9701]
gi|389881036|emb|CCI38372.1| Endonuclease III [Microcystis aeruginosa PCC 9701]
Length = 219
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P +++ELL LPG+ K A++V+ + ++G+ VDTHV R+ NRLG +
Sbjct: 105 LKDFQGEVPKTMEELLTLPGVARKTANVVLAHAYAIIEGVTVDTHVKRLSNRLGLTT--- 161
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ P + L LP+ +W + ++ G+ +C P C C ++ LCP+A
Sbjct: 162 ----NNDPVKIERDLMALLPQPDWETFSISIIYHGRAVCKARNPACFSCQLASLCPAA 215
>gi|414155043|ref|ZP_11411359.1| putative endonuclease III [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
gi|411453356|emb|CCO09263.1| putative endonuclease III [Desulfotomaculum hydrothermale Lam5 =
DSM 18033]
Length = 233
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I +Y G +P+ DEL LPG+G K A++V+ V + + VDTHVHR+ RLG S
Sbjct: 111 IIAEQYQGQVPARRDELEKLPGVGRKTANVVLGVAFGQ-HTLPVDTHVHRVARRLGLAS- 168
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
+PE T + L +P W P + ++ G+ +C RPRC C +S+LCP
Sbjct: 169 ------GKTPELTEQELCAVIPPPLWQPTHHRIIQHGRKVCLARRPRCCRCFLSDLCPE 221
>gi|442770868|gb|AGC71571.1| endonuclease III [uncultured bacterium A1Q1_fos_517]
Length = 177
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 7/116 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P +++EL+ LPG+G K A++V+ + +G+ VDTHV R+ RLG
Sbjct: 67 RHGGEVPRTMEELVKLPGVGRKTANVVLGNAFGLNEGVVVDTHVGRLAGRLGL------- 119
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K + P + L P+ +W ++ LL+ G+ IC +P C C +++LCPSA
Sbjct: 120 SKATDPVKIEHDLMPLFPRPDWTLLSHLLIEHGRKICNARKPLCSSCFLADLCPSA 175
>gi|313893605|ref|ZP_07827174.1| endonuclease III [Veillonella sp. oral taxon 158 str. F0412]
gi|313441876|gb|EFR60299.1| endonuclease III [Veillonella sp. oral taxon 158 str. F0412]
Length = 211
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 8/122 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + +Y G++P D+L+ LPG+G K A++V++V + I VDTHV R+ NRL
Sbjct: 97 ILVDQYHGEVPREFDQLVELPGVGRKTANVVVSVLFGT-PAIAVDTHVFRVSNRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ +PE+ LQ +PKE+W + L+ G+ +C +P C C ++ LCPSA
Sbjct: 151 --KLGIAKTPEEMELKLQKAIPKEDWAAAHHWLIYHGRKVCKARKPLCDDCFLNHLCPSA 208
Query: 127 FK 128
K
Sbjct: 209 GK 210
>gi|452994364|emb|CCQ94051.1| endonuclease III DNA glycosylase/apyrimidinic (AP) lyase
[Clostridium ultunense Esp]
Length = 240
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+ A I L ++ G++P +++ELLLLPG+G K A++V++ + V I VDTHV R+ NR+G
Sbjct: 112 RTARIILERHGGEVPRTMEELLLLPGVGRKTANVVLSNAF-GVPAIAVDTHVFRVSNRIG 170
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+ + +T + L +P+ EW + LL+ G+ IC PRC C +
Sbjct: 171 LAN-------SEDVLETEKQLMDLIPRNEWSFAHHLLIWHGRRICHARAPRCMECPIFPY 223
Query: 123 CPSAFKDSSSPSSKSRK 139
C A + + P +K
Sbjct: 224 CRFASQSDAVPKKNDKK 240
>gi|425460521|ref|ZP_18840002.1| Endonuclease III [Microcystis aeruginosa PCC 9808]
gi|389826762|emb|CCI22472.1| Endonuclease III [Microcystis aeruginosa PCC 9808]
Length = 218
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P +++ELL LPG+ K A++V+ + ++G+ VDTHV R+ NRLG +
Sbjct: 104 LEDFQGEVPKTMEELLTLPGVARKTANVVLAHAYAIIEGVTVDTHVKRLSNRLGLTTN-- 161
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ P + L LP+ +W + ++ G+ +C P C C ++ LCP+A
Sbjct: 162 -----NDPVKIERDLMALLPQPDWETFSISIIYHGRAVCKARNPTCFSCQLASLCPAA 214
>gi|386853035|ref|YP_006271048.1| endonuclease III [Actinoplanes sp. SE50/110]
gi|359840539|gb|AEV88980.1| endonuclease III [Actinoplanes sp. SE50/110]
Length = 267
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P LDEL+ LPGIG K A++++ ++ V GI VDTH R+ NR GWV +
Sbjct: 112 LATHGGELPRKLDELVKLPGIGRKTANVILGNAFD-VPGITVDTHFRRLTNRFGWVDE-- 168
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
P + ++ + K +W ++ ++ G+ +C +P CG C+++ CPS
Sbjct: 169 -----EDPVKIEFLVAELIEKRDWTMLSHRVIFHGRRVCHARKPACGACTLAASCPS 220
>gi|120603042|ref|YP_967442.1| endonuclease III [Desulfovibrio vulgaris DP4]
gi|120563271|gb|ABM29015.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Desulfovibrio vulgaris DP4]
Length = 285
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 76/131 (58%), Gaps = 10/131 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G++P ++DEL+ LPG+ K A++V+ G+ +GI VDTHV RI +R+G +
Sbjct: 104 HGGEVPRTMDELVQLPGVARKTANVVLWGGFGVNEGIAVDTHVKRIVHRMGLT------K 157
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS---AFK 128
+T R++++L+ P+E W +N +LV FG+ +C +P C C ++ +C +
Sbjct: 158 ETDPVAVERDLMRLY-PREAWGDVNHMLVWFGRHVCDARKPLCEQCEMAGICAKVGVGKE 216
Query: 129 DSSSPSSKSRK 139
D+ + K RK
Sbjct: 217 DAPAAPRKGRK 227
>gi|429735979|ref|ZP_19269899.1| endonuclease III [Selenomonas sp. oral taxon 138 str. F0429]
gi|429156537|gb|EKX99166.1| endonuclease III [Selenomonas sp. oral taxon 138 str. F0429]
Length = 210
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I L +Y G++P+ D L LPG+G K A++VM+V ++ I VDTHV R+ NRL
Sbjct: 97 ILLREYGGEVPADFDALQRLPGVGRKTANVVMSVAFH-APAIAVDTHVFRVSNRL----- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
R +P + + LQ +P+E+W + L+ G+ +C +P CG C ++ +CPS+
Sbjct: 151 --RLAVGKTPLEVEKGLQKAIPREDWSDAHHWLILHGRQLCKARKPLCGQCPLAPICPSS 208
>gi|419719449|ref|ZP_14246728.1| endonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304362|gb|EIC95768.1| endonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 209
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L+ ++G++PS LD LL LPG+G K A+++ ++ + I VDTHV RI +LG
Sbjct: 98 LSDFNGEVPSDLDSLLTLPGVGRKTANVIRGNIFD-MPSIVVDTHVKRITKKLGLT---- 152
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
++ P + L LPK+ W+ N L+ G+TIC R +C +C + E CPSA
Sbjct: 153 ---ESEDPVKIEFELMEILPKDHWILWNTDLITLGRTICIARREKCDICFLREECPSA 207
>gi|392375195|ref|YP_003207028.1| endonuclease III [Candidatus Methylomirabilis oxyfera]
gi|258592888|emb|CBE69197.1| Endonuclease III (DNA-(apurinic or apyrimidinic site) lyase)
[Candidatus Methylomirabilis oxyfera]
Length = 224
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G +P +++EL+ L G+ K A++V+ GI VDTHV R+ NRLG
Sbjct: 112 EFGGQVPQTMEELITLSGVWRKTANIVLGNALGITAGIAVDTHVIRVANRLGLA------ 165
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
++ P++ + L +PKE+W+P+ LLV G+ IC +P C C V LCP
Sbjct: 166 -QSDKPDEIEQQLCRIIPKEKWIPLTHLLVFHGRRICMARKPDCPRCPVRHLCP 218
>gi|268317390|ref|YP_003291109.1| endonuclease III [Rhodothermus marinus DSM 4252]
gi|262334924|gb|ACY48721.1| endonuclease III [Rhodothermus marinus DSM 4252]
Length = 267
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G+IP+SL+ L LPG+GPK A +V +V + V + VDTHV+R+ +R+G V +
Sbjct: 88 FGGEIPASLEALESLPGVGPKTARVVASVAFG-VAALPVDTHVYRVAHRIGLV------R 140
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ +P + L+ LP +W + LL+ G+ CT RP C C +++LC
Sbjct: 141 RARTPLEVERRLKRQLPARDWGEAHHLLILHGRYTCTARRPHCERCVLTDLC 192
>gi|46579403|ref|YP_010211.1| endonuclease III [Desulfovibrio vulgaris str. Hildenborough]
gi|387152781|ref|YP_005701717.1| endonuclease III [Desulfovibrio vulgaris RCH1]
gi|46448817|gb|AAS95470.1| endonuclease III, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233225|gb|ADP86079.1| endonuclease III [Desulfovibrio vulgaris RCH1]
Length = 285
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 79/141 (56%), Gaps = 17/141 (12%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G++P ++DEL+ LPG+ K A++V+ G+ +GI VDTHV RI +R+G +
Sbjct: 104 HGGEVPRTMDELVQLPGVARKTANVVLWGGFGVNEGIAVDTHVKRIVHRMGLT------K 157
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC-------- 123
+T R++++L+ P+E W +N +LV FG+ +C +P C C ++ +C
Sbjct: 158 ETDPVAVERDLMRLY-PREAWGDVNHMLVWFGRHVCDARKPLCEQCEMAGICAKVGVGKE 216
Query: 124 --PSAFKDSSSPSSKSRKSAQ 142
P+A + P + + KS +
Sbjct: 217 DAPAAPRKGRKPGAVAAKSGR 237
>gi|315652208|ref|ZP_07905203.1| endonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485514|gb|EFU75901.1| endonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 209
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L+ ++G++PS LD LL LPG+G K A+++ ++ + I VDTHV RI +LG
Sbjct: 98 LSDFNGEVPSDLDSLLTLPGVGRKTANVIRGNIFD-MPSIVVDTHVKRITKKLGLT---- 152
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
++ P + L LPK+ W+ N L+ G+TIC R +C +C + E CPSA
Sbjct: 153 ---ESEDPVKIEFELMEILPKDHWILWNTDLITLGRTICIARREKCDICFLREECPSA 207
>gi|443294606|ref|ZP_21033700.1| Endonuclease III [Micromonospora lupini str. Lupac 08]
gi|385882078|emb|CCH21966.1| Endonuclease III [Micromonospora lupini str. Lupac 08]
Length = 238
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 74/136 (54%), Gaps = 8/136 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K+ L +YDG +P L +L+ LPGIG K A++++ ++ V GI VDTH R+ +R
Sbjct: 80 KLGQALLDRYDGRVPGRLVDLVTLPGIGRKTANVILGNAFD-VPGITVDTHFQRLVHR-- 136
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W R + P + + PK +W ++ ++ G+ +C +P CG C++++L
Sbjct: 137 W-----RLTTETDPVKIEHAIGALYPKRDWTMLSHRIIFHGRRVCHARKPACGACTLAKL 191
Query: 123 CPSAFKDSSSPSSKSR 138
CPS + P++ ++
Sbjct: 192 CPSYGTGPTEPAAAAK 207
>gi|317123642|ref|YP_004097754.1| DNA-(apurinic or apyrimidinic site) lyase [Intrasporangium calvum
DSM 43043]
gi|315587730|gb|ADU47027.1| endonuclease III; DNA-(apurinic or apyrimidinic site) lyase
[Intrasporangium calvum DSM 43043]
Length = 244
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K+ + ++DG++P L +L+ LPG+G K A++V+ + NV GI VDTH R+ R G
Sbjct: 108 KLGQALVERFDGEVPGRLKDLVTLPGVGRKTANVVLGNAF-NVPGITVDTHFGRLVRRFG 166
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W ++ P + + + +W ++ +++ G+ C +P CG C V+
Sbjct: 167 WTAE-------EDPVKVEHAVGALFLRRDWTMLSHVVIFHGRRTCHAKKPACGACPVARW 219
Query: 123 CPSAFKDSSSPSSKSR 138
CPS + P +R
Sbjct: 220 CPSYGIGETDPERAAR 235
>gi|218247153|ref|YP_002372524.1| endonuclease III [Cyanothece sp. PCC 8801]
gi|257060225|ref|YP_003138113.1| endonuclease III [Cyanothece sp. PCC 8802]
gi|218167631|gb|ACK66368.1| endonuclease III [Cyanothece sp. PCC 8801]
gi|256590391|gb|ACV01278.1| endonuclease III [Cyanothece sp. PCC 8802]
Length = 220
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+++G +P +++LL LPG+ K A++V+ G+ QG+ VDTHV R+ RLG
Sbjct: 107 EFEGQVPKQMEQLLSLPGVARKTANVVLAHGFGINQGVTVDTHVKRLSGRLGLT------ 160
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
K + P + L LP+ +W + ++ G+ +C+ +P C CS++ LCPS +
Sbjct: 161 -KETDPVKIERDLMKLLPQPDWENFSIRIIYHGRAVCSARKPDCANCSLAHLCPSVLE 217
>gi|397669156|ref|YP_006510691.1| endonuclease III [Propionibacterium propionicum F0230a]
gi|395142567|gb|AFN46674.1| endonuclease III [Propionibacterium propionicum F0230a]
Length = 205
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ +A + +DG +P SLDEL+ LPG+G K A++V+ + + GI DTHV R+ NR
Sbjct: 86 LTGLARALVADHDGRVPDSLDELVKLPGVGRKTANVVLGDAF-GIPGITPDTHVIRVSNR 144
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGWV ++ P+ + P EWV + ++ G+ C P C C V
Sbjct: 145 LGWV-------HSTKPDDVERAVGALFPPGEWVVLCHRIIWHGRRCCRARTPACTACPVE 197
Query: 121 ELCPSA 126
+LCPS+
Sbjct: 198 DLCPSS 203
>gi|348172927|ref|ZP_08879821.1| putative endonuclease III [Saccharopolyspora spinosa NRRL 18395]
Length = 275
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ KYDG++P L++L+ LPGIG K A++++ + +V GI VDTH R+ R GW +
Sbjct: 119 VEKYDGEVPGKLEQLVKLPGIGRKTANVILGNAF-DVPGITVDTHFGRLVRRWGWTDE-- 175
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
P + + +P++EW ++ ++ G+ +C +P CG C +++ CPS
Sbjct: 176 -----EDPVKVEHAIGELIPRKEWTMLSHRVIFHGRRVCHARKPACGACLLAKDCPS 227
>gi|297544987|ref|YP_003677289.1| endonuclease III [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842762|gb|ADH61278.1| endonuclease III [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 213
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 8/113 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
KYD +P +L+EL+ LPG+G K A++V++ ++ Q I VDTHV R+ NR+G K
Sbjct: 101 KYDSKVPETLEELMALPGVGRKTANVVLSNAFSK-QAIAVDTHVFRVSNRIGLADS---K 156
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
++ +Q E+ +PK+ W + LL+ G+ +C +P+C C V+ LC
Sbjct: 157 DVFATEKQLMEI----IPKDLWSLSHHLLIHHGRNLCMARKPKCDECPVNHLC 205
>gi|289578750|ref|YP_003477377.1| endonuclease III [Thermoanaerobacter italicus Ab9]
gi|289528463|gb|ADD02815.1| endonuclease III [Thermoanaerobacter italicus Ab9]
Length = 213
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 8/113 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
KYD +P +L+EL+ LPG+G K A++V++ ++ Q I VDTHV R+ NR+G K
Sbjct: 101 KYDSKVPETLEELMTLPGVGRKTANVVLSNAFSK-QAIAVDTHVFRVSNRIGLADS---K 156
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
++ +Q E+ +PK+ W + LL+ G+ +C +P+C C V+ LC
Sbjct: 157 DVFATEKQLMEI----IPKDLWSLSHHLLIHHGRNLCMARKPKCDECPVNHLC 205
>gi|258404953|ref|YP_003197695.1| endonuclease III [Desulfohalobium retbaense DSM 5692]
gi|257797180|gb|ACV68117.1| endonuclease III [Desulfohalobium retbaense DSM 5692]
Length = 212
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ +++G +P ++ +LL LPG+ K A++V++ + + +GI VDTHV R+ NRLG
Sbjct: 98 VKEHEGQVPDTMSQLLALPGVARKTANIVLSNAFGHNEGIAVDTHVKRLANRLGLTD--- 154
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
P + L P+ +W +N LV FG+ +C P C C + ++CP
Sbjct: 155 ----AKDPNHIEQDLMPLFPQNQWGALNHYLVLFGREVCKARSPLCSQCPLYDICP 206
>gi|168701184|ref|ZP_02733461.1| endonuclease III [Gemmata obscuriglobus UQM 2246]
Length = 250
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++ G +P+ LD+L+ LPG+G K A+++ + G+ VDTHV R+ RLG
Sbjct: 108 VARFGGQVPTDLDDLVSLPGVGRKTANVIRGHAFET-PGVTVDTHVGRLSRRLGLT---- 162
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+ SP + L +P+ EW+ + L+ G+ +C +PRC C+V++LCP
Sbjct: 163 ---RHQSPVKVELALAEIVPQAEWLHFSGRLIMHGRKVCLARKPRCEQCAVADLCPKVGV 219
Query: 129 DSSSPSSKSRKSAQ 142
+ S + +K A+
Sbjct: 220 KGLAASRRRKKKAK 233
>gi|225850013|ref|YP_002730247.1| endonuclease III [Persephonella marina EX-H1]
gi|225646620|gb|ACO04806.1| endonuclease III [Persephonella marina EX-H1]
Length = 215
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ +++G IP ++D+L LPG+G K A +++ V N I VDTHV R+ RLG
Sbjct: 102 VKEFNGKIPDNIDDLTKLPGVGRKTASVIL-VNAFNKPAIVVDTHVKRVSQRLGITE--- 157
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+++P++ + L + KE W+ I+ +V FG+ IC P+C C++ ++CP
Sbjct: 158 ----SNNPDRIEKDLAEFFSKENWIFISKAMVLFGRYICKAKNPKCKECALLDICP 209
>gi|218290429|ref|ZP_03494559.1| endonuclease III [Alicyclobacillus acidocaldarius LAA1]
gi|218239557|gb|EED06751.1| endonuclease III [Alicyclobacillus acidocaldarius LAA1]
Length = 220
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+ A I + +Y G++P S D L+ LPG+G K A++V++ + V VDTHV R+ NR+G
Sbjct: 94 ETARILVDEYGGEVPKSRDRLMELPGVGRKTANVVVSNAYG-VPAFAVDTHVQRVTNRIG 152
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
+++ P +T + + LP E W + L+ G+ +CT +P+C +C V++L
Sbjct: 153 LA-------QSNDPLKTEQQVCAKLPPELWTKAHHALILHGRRVCTARKPKCHICPVADL 205
Query: 123 CPSA 126
C A
Sbjct: 206 CQYA 209
>gi|357061372|ref|ZP_09122129.1| endonuclease III [Alloprevotella rava F0323]
gi|355374445|gb|EHG21740.1| endonuclease III [Alloprevotella rava F0323]
Length = 215
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 72/121 (59%), Gaps = 6/121 (4%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++A + + K+ G++P +L++L LPG+G K A++V+ V + + VDTH++R+ +RLG
Sbjct: 92 ELAKMLVEKFQGEVPQTLEQLTQLPGVGRKTANVVLAVAFGQA-ALAVDTHIYRVAHRLG 150
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
V ++P + L+ ++P+E+ + L+ G+ CT +RP+C C +S L
Sbjct: 151 LVPASA-----NTPYKVEMALRKFIPEEDVAHSHFWLLLHGRYTCTALRPKCEQCGLSHL 205
Query: 123 C 123
C
Sbjct: 206 C 206
>gi|260905496|ref|ZP_05913818.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III
[Brevibacterium linens BL2]
Length = 246
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K+A + YDG++P+SLD L+ L G+G K A++V+ ++ G+ VDTH+ R+ RLG
Sbjct: 109 KLANELVDTYDGEVPNSLDRLVKLAGVGRKTANVVLGNAFDT-PGLTVDTHMGRLARRLG 167
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W + P + + PK++ ++ ++ G+ IC RP CG C + L
Sbjct: 168 WTEE-------DDPVKAEHEIAALFPKKDLTLLSHRVIFHGRRICHSRRPACGACPLMAL 220
Query: 123 CPS 125
CPS
Sbjct: 221 CPS 223
>gi|392940251|ref|ZP_10305895.1| endonuclease III [Thermoanaerobacter siderophilus SR4]
gi|392292001|gb|EIW00445.1| endonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 216
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 8/113 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
KYD +P +L+ELL LPG+G K A++V++ ++ Q I VDTHV R+ NR+G K
Sbjct: 104 KYDSKVPETLEELLTLPGVGRKTANVVLSNAFSK-QAIAVDTHVFRVSNRIGLADS---K 159
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
++ +Q E+ +P+ W + LL+ G+ +CT +P+C C V+ LC
Sbjct: 160 DVFTTEKQLMEL----IPENLWSLSHHLLIHHGRNLCTARKPKCDECPVNHLC 208
>gi|326390592|ref|ZP_08212148.1| endonuclease III [Thermoanaerobacter ethanolicus JW 200]
gi|325993417|gb|EGD51853.1| endonuclease III [Thermoanaerobacter ethanolicus JW 200]
Length = 216
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 8/113 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
KYD +P +L+ELL LPG+G K A++V++ ++ Q I VDTHV R+ NR+G K
Sbjct: 104 KYDSKVPETLEELLTLPGVGRKTANVVLSNAFSK-QAIAVDTHVFRVSNRIGLADS---K 159
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
++ +Q E+ +P+ W + LL+ G+ +CT +P+C C V+ LC
Sbjct: 160 DVFTTEKQLMEL----IPENLWSLSHHLLIHHGRNLCTARKPKCDECPVNHLC 208
>gi|441149052|ref|ZP_20965089.1| endonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
gi|440619637|gb|ELQ82680.1| endonuclease III [Streptomyces rimosus subsp. rimosus ATCC 10970]
Length = 248
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 8/115 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P L++L+ LPG+G K A++V+ + V GI VDTH R+ R W Q
Sbjct: 98 RFDGEVPGRLEDLVTLPGVGRKTANVVLGNAFG-VPGITVDTHFGRLVRRFRWTEQ---- 152
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
PE+ + PK EW ++ +V G+ +C +P CG C ++ CPS
Sbjct: 153 ---QDPEKVEAEIAEIFPKSEWTMLSHRVVFHGRRVCHSRKPACGACPIAHDCPS 204
>gi|212696106|ref|ZP_03304234.1| hypothetical protein ANHYDRO_00642 [Anaerococcus hydrogenalis DSM
7454]
gi|325846564|ref|ZP_08169479.1| endonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|212676735|gb|EEB36342.1| hypothetical protein ANHYDRO_00642 [Anaerococcus hydrogenalis DSM
7454]
gi|325481322|gb|EGC84363.1| endonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 221
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 8/125 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + + + ++DG++PS++ +L+ LPG+G K A++VM+ + + I VDTHV R+ NR
Sbjct: 100 IKNASIMLIREFDGEVPSNMKDLIKLPGVGRKTANVVMSNAF-GIDAIAVDTHVQRVSNR 158
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G + T + L+ LPKE+W ++ ++ G+ IC P C C +
Sbjct: 159 IGLAH-------SKDVLNTEKDLRKNLPKEKWSKLHHQIIAHGRKICKARNPLCEECDLR 211
Query: 121 ELCPS 125
+LC
Sbjct: 212 DLCED 216
>gi|395769029|ref|ZP_10449544.1| endonuclease III [Streptomyces acidiscabies 84-104]
Length = 277
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G++P L++L+ LPG+G K A +V+ + GI VDTH R+ R W ++
Sbjct: 125 FGGEVPGRLEDLVKLPGVGRKTAFVVLGNAYGR-PGITVDTHFQRLVRRFRWTAE----- 178
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
+ PE+ + PK +W ++ ++ G+ IC +P CG C ++ LCPS + +
Sbjct: 179 --TDPEKIEAAISELFPKSDWTDLSHHVIWHGRRICHARKPACGACPIAPLCPSYGEGET 236
Query: 132 SPSSKSRK 139
P K+RK
Sbjct: 237 DP-EKARK 243
>gi|425447541|ref|ZP_18827528.1| Endonuclease III [Microcystis aeruginosa PCC 9443]
gi|389731843|emb|CCI04132.1| Endonuclease III [Microcystis aeruginosa PCC 9443]
Length = 219
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P ++ ELL LPG+ K A++V+ + ++G+ VDTHV R+ NRLG +
Sbjct: 105 LKDFQGEVPKTMAELLTLPGVARKTANVVLAHAYGMIEGVTVDTHVKRLSNRLGLTTN-- 162
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ P + L LP+ +W + ++ G+ +C P C C ++ LCP+A
Sbjct: 163 -----NDPVKIERDLMALLPQPDWETFSISIIYHGRAVCKARNPACFSCQLASLCPTA 215
>gi|386392631|ref|ZP_10077412.1| endonuclease III [Desulfovibrio sp. U5L]
gi|385733509|gb|EIG53707.1| endonuclease III [Desulfovibrio sp. U5L]
Length = 210
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + ++ G +P S+ +L LPG+ K A++V++ +GI VDTHV R+ RLG
Sbjct: 94 ARLMAERHGGGVPDSMAKLTTLPGVARKTANIVLSNALGKNEGIAVDTHVRRLAFRLGLT 153
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
+ +++P + L LP+E+W +N LLV G+ +C +PRC +C + +CP
Sbjct: 154 A-------STNPIIIERDMMLLLPQEDWGLVNHLLVLHGRAVCKARKPRCDLCVLGGICP 206
>gi|269986417|gb|EEZ92704.1| DNA-(apurinic or apyrimidinic site) lyase [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 229
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 9/130 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + +++ +PS+ ++L+ +PG+G K+A LV+ G+N + I VDTHV+RI RLG V +
Sbjct: 95 VLIKEFNSKVPSTKEKLMTIPGVGNKVASLVLEWGFN-LPYIAVDTHVNRISQRLGIVPE 153
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ PE+T +L+ L + + N V FG+ IC PI P CG C V C
Sbjct: 154 ------GTKPEKTELILESILNPKLRITTNYSFVKFGREICRPINPLCGKCPVYSYC--G 205
Query: 127 FKDSSSPSSK 136
FK S +K
Sbjct: 206 FKLKSKYKNK 215
>gi|126178987|ref|YP_001046952.1| endonuclease III [Methanoculleus marisnigri JR1]
gi|125861781|gb|ABN56970.1| DNA-(apurinic or apyrimidinic site) lyase [Methanoculleus
marisnigri JR1]
Length = 218
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++ G++P +++EL LPG+G K A++V++ ++ GI VDTHV R+ RLG+
Sbjct: 100 VAEFGGEVPRTMEELQTLPGVGRKTANIVLSHAFDINVGIAVDTHVRRVSKRLGFTD--- 156
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+++P+ L P+E W IN LL+ G+ +CT P+ +C V+ LC
Sbjct: 157 ----STNPDIIERDLVALFPEEVWRDINYLLIRHGRAVCTAKNPKHEVCVVAGLC 207
>gi|302870344|ref|YP_003838981.1| endonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|315503379|ref|YP_004082266.1| endonuclease III [Micromonospora sp. L5]
gi|302573203|gb|ADL49405.1| endonuclease III [Micromonospora aurantiaca ATCC 27029]
gi|315409998|gb|ADU08115.1| endonuclease III [Micromonospora sp. L5]
Length = 259
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 72/128 (56%), Gaps = 8/128 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+YDG++P LD+L+ LPGIG K A++++ + V GI VDTH R+ +R ++
Sbjct: 109 RYDGEVPGRLDDLVTLPGIGRKTANVILGNAFG-VPGITVDTHFQRLVHRWQLTTE---- 163
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
+ P + + PK +W ++ ++ G+ +C +P CG C++++LCP+
Sbjct: 164 ---TDPVKIEHAIGALYPKRDWTMLSHRVIFHGRRVCHARKPACGACTLAKLCPAYGTGP 220
Query: 131 SSPSSKSR 138
+ P++ ++
Sbjct: 221 TEPAAAAK 228
>gi|334338140|ref|YP_004543292.1| endonuclease III [Isoptericola variabilis 225]
gi|334108508|gb|AEG45398.1| endonuclease III [Isoptericola variabilis 225]
Length = 243
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 8/135 (5%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
+A + ++DG++P +++L+ LPG+G K A++V+ + + GI VDTH R+ R GW
Sbjct: 109 LAQALVERFDGEVPPRMEDLVTLPGVGRKTANVVLGNAFG-IPGITVDTHFGRLARRFGW 167
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ P + + +PK++W ++ LV G+ +C RP CG C V+ C
Sbjct: 168 TT-------AEDPVKVEHEVGQIIPKKDWTMLSHHLVWHGRRVCHSRRPACGACPVARWC 220
Query: 124 PSAFKDSSSPSSKSR 138
PS + P + ++
Sbjct: 221 PSYGIGETDPVAAAK 235
>gi|86608470|ref|YP_477232.1| endonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557012|gb|ABD01969.1| endonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 234
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L+ + G +P ++ ELL LPG+ K A++V+ + G+ VDTHV R+ RLG
Sbjct: 102 LSHFGGQVPRTMPELLTLPGVARKTANVVLAHAFGINAGVTVDTHVKRLSRRLGLTEH-- 159
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA-F 127
P + + L LP+ +W + L+ G+ ICT RP C C +++LCPSA
Sbjct: 160 -----EDPVRIEKDLMQLLPQADWENWSIRLIDHGRAICTARRPLCQQCFLADLCPSAPL 214
Query: 128 KDSSSPSSKSRKSAQK 143
++P K K A K
Sbjct: 215 LRPAAPDEKMDKKATK 230
>gi|398784025|ref|ZP_10547333.1| endonuclease III [Streptomyces auratus AGR0001]
gi|396995473|gb|EJJ06487.1| endonuclease III [Streptomyces auratus AGR0001]
Length = 328
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P L++L+ LPG+G K A++V+ + V GI VDTH R+ R GW +
Sbjct: 174 RFGGEVPGRLEDLVTLPGVGRKTANVVLGNAFG-VPGITVDTHFGRLARRFGWTT----- 227
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
E+ + PK EW ++ +V G+ +C +P CG C+++ LCP A+ +
Sbjct: 228 --AEDAEKVEADVAGIFPKSEWTMLSHRVVFHGRRVCHSRKPACGACAIAPLCP-AYGEG 284
Query: 131 SSPSSKSRK 139
+ K++K
Sbjct: 285 ETDPEKAKK 293
>gi|365840420|ref|ZP_09381609.1| endonuclease III [Anaeroglobus geminatus F0357]
gi|364561459|gb|EHM39359.1| endonuclease III [Anaeroglobus geminatus F0357]
Length = 496
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 9/126 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
M A +C +Y G++P + DEL+ LPG+G K A+++++V + + I VDTHV R+ NR
Sbjct: 370 MNTCAILC-KQYKGEVPHTFDELVKLPGVGRKTANVLVSVLFG-IPAIAVDTHVFRVSNR 427
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+ R ++PE + LQ +P++ W + L+ G+ IC +P C C +
Sbjct: 428 M-------RLATGTTPEAVEKGLQKAIPRKWWSRAHHWLIWHGRRICKARKPLCETCFQN 480
Query: 121 ELCPSA 126
+LCPS+
Sbjct: 481 DLCPSS 486
>gi|334137758|ref|ZP_08511184.1| endonuclease III [Paenibacillus sp. HGF7]
gi|333604599|gb|EGL15987.1| endonuclease III [Paenibacillus sp. HGF7]
Length = 209
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K+ + L +YDG IP++ ++L+ LPG+G K A++V++ + V I VDTHV R+ R
Sbjct: 88 IQKLCQLVLERYDGQIPTTHEQLVELPGVGRKTANVVVSNAF-GVPAIAVDTHVERVSKR 146
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG K S + + L +P+EEW + L+ FG+ C P+C +C +
Sbjct: 147 LGLAG------KDDSVLEVEKKLMRKVPREEWTLTHHRLIFFGRYHCKAQSPKCDICPLL 200
Query: 121 ELCPSA 126
++CP
Sbjct: 201 DICPEG 206
>gi|238061480|ref|ZP_04606189.1| endonuclease III [Micromonospora sp. ATCC 39149]
gi|237883291|gb|EEP72119.1| endonuclease III [Micromonospora sp. ATCC 39149]
Length = 262
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++ + +YDG +P LD L+ LPG+G K A++++ + V GI VDTH R+ +R
Sbjct: 104 RLGQALVERYDGQVPGKLDALVTLPGMGRKTANVILGNAFG-VPGITVDTHFQRLVHR-- 160
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W R + P + + PK +W ++ ++ G+ +C +P CG C++++L
Sbjct: 161 W-----RLTAETDPVKIEHAIGAMYPKRDWTMLSHRIIFHGRRVCHAKKPGCGACTLAKL 215
Query: 123 CPSAFKDSSSPSSKSR 138
CPS + P++ ++
Sbjct: 216 CPSYGTGPTEPAAAAK 231
>gi|374296575|ref|YP_005046766.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Clostridium clariflavum DSM 19732]
gi|359826069|gb|AEV68842.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Clostridium clariflavum DSM 19732]
Length = 214
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I + K+DG +P +LD+LL LPG+G K A+LV+ + + GI VDTH R+ NR
Sbjct: 90 IKETCRILIEKFDGKVPDNLDDLLTLPGVGRKTANLVLGDVY-GIPGIVVDTHAKRLSNR 148
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G K P + L +PKE W LV G+ +C +P+C C++
Sbjct: 149 IGL-------SKNEDPVKIEYDLMKIVPKERWGKFCHQLVYHGRAVCNARKPKCEECAIL 201
Query: 121 ELC 123
C
Sbjct: 202 NYC 204
>gi|94968981|ref|YP_591029.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Candidatus Koribacter versatilis Ellin345]
gi|94551031|gb|ABF40955.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase
[Candidatus Koribacter versatilis Ellin345]
Length = 278
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 9/138 (6%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64
A + + + G++P+ +D+LL +PG K A++V+ + G+ VDTHVHRI RL
Sbjct: 149 AKVIVNDFGGEVPNEMDKLLTVPGAARKTANVVLGSWFGIAAGVVVDTHVHRISRRLELT 208
Query: 65 SQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCP 124
K + P+ + L LP++ W+ + ++ G+ IC +P+C CS+ +C
Sbjct: 209 -------KNNDPKTIEQDLMKILPRDRWINFSHEIIHHGRAICIARKPKCVDCSLENICH 261
Query: 125 SAFKDSSSPSSKSRKSAQ 142
+A D + + + KSAQ
Sbjct: 262 AA--DKTWSTVEIHKSAQ 277
>gi|336477928|ref|YP_004617069.1| endonuclease III [Methanosalsum zhilinae DSM 4017]
gi|335931309|gb|AEH61850.1| endonuclease III [Methanosalsum zhilinae DSM 4017]
Length = 221
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A I + ++ IP +D LL LPGIG K A+++++ + GI VDTHV R+ R
Sbjct: 100 IKESARIIIEDFNSRIPEDMDGLLKLPGIGRKTANIILSRAFGKNCGIAVDTHVARLAGR 159
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ + +PE+ + L K +W ++ L+ G+ +C P C +C V+
Sbjct: 160 LGFTD-------SKNPEKIEKELMALADKVDWEDLSMTLILHGRRVCHARGPECEVCVVN 212
Query: 121 ELCPSA 126
LCPS+
Sbjct: 213 HLCPSS 218
>gi|345849058|ref|ZP_08802074.1| endonuclease/N-glycosylase [Streptomyces zinciresistens K42]
gi|345639477|gb|EGX60968.1| endonuclease/N-glycosylase [Streptomyces zinciresistens K42]
Length = 313
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+Y G++P L++L+ LPG+G K A +V+ + GI VDTH R+ R W Q
Sbjct: 160 EYGGEVPGRLEDLVKLPGVGRKTAFVVLGNAFGR-PGITVDTHFQRLVRRWKWTEQ---- 214
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
+ P++ + PK +W ++ +V G+ IC +P CG C ++ LCP AF +
Sbjct: 215 ---TDPDKIEAEIAGLFPKSDWTDLSHHVVWHGRRICHARKPACGACPIAPLCP-AFGEG 270
Query: 131 SSPSSKSRK 139
+ K+RK
Sbjct: 271 ETDPEKARK 279
>gi|302874216|ref|YP_003842849.1| endonuclease III [Clostridium cellulovorans 743B]
gi|307689520|ref|ZP_07631966.1| endonuclease III [Clostridium cellulovorans 743B]
gi|302577073|gb|ADL51085.1| endonuclease III [Clostridium cellulovorans 743B]
Length = 217
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 14/120 (11%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGI---CVDTHVHRICNRLGW 63
I + KY+G +P S++EL LPG+G K A NV +NV GI VDTHV R+ NR+G
Sbjct: 103 ILIEKYNGQVPKSIEELTTLPGVGKKTA----NVVASNVFGIPAIAVDTHVFRVANRIGI 158
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ +PE+ E L +PKE+W + L+ G+ IC +P C +C++ C
Sbjct: 159 A-------EGKTPEKVEEQLMEAIPKEKWSDSHHYLIWHGRRICKARKPECEVCNLKYEC 211
>gi|284028446|ref|YP_003378377.1| endonuclease III [Kribbella flavida DSM 17836]
gi|283807739|gb|ADB29578.1| endonuclease III [Kribbella flavida DSM 17836]
Length = 262
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K+ + +YDG +P L+EL+ LPG G K A++V+ + + GI VDTH R+ R G
Sbjct: 129 KLGQALVDEYDGQVPGKLEELVKLPGTGRKTANVVLGNAFG-IPGITVDTHFGRLVRRFG 187
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W ++ P + ++ PK++W ++ L+ G+ C +P CG C +++
Sbjct: 188 WTTE-------EDPVKVEHLIGALFPKKDWTMLSHRLIFHGRRRCHAKKPACGACPLAQW 240
Query: 123 CPS 125
CPS
Sbjct: 241 CPS 243
>gi|392426401|ref|YP_006467395.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Desulfosporosinus acidiphilus SJ4]
gi|391356364|gb|AFM42063.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Desulfosporosinus acidiphilus SJ4]
Length = 215
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 8/120 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + KY G +P S+D L LPG+G K A++V++ + + I VDTHV R+ +R+G
Sbjct: 99 ILVEKYSGIVPESIDLLRKLPGVGRKTANVVVSNAYG-IPAIAVDTHVFRVAHRIGLA-- 155
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ S+ E+ + L P+E+W ++ LL+ G+ ICT +P C C V+ +C A
Sbjct: 156 -----EGSTAEKVEKELMEQFPREQWSDLHHLLIFLGRRICTARKPNCPACPVASVCKMA 210
>gi|158312190|ref|YP_001504698.1| endonuclease III [Frankia sp. EAN1pec]
gi|158107595|gb|ABW09792.1| endonuclease III [Frankia sp. EAN1pec]
Length = 241
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
I + ++DG++P L+ L+ LPG+G K A++V+ + + GI VDTHV R+ R G
Sbjct: 105 IGAALVERFDGEVPGRLEALVTLPGVGRKTANVVLGHCFG-IPGITVDTHVGRLSRRFGL 163
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
++ + P + L + + +W + ++ G+ +C RP CG C+++ +C
Sbjct: 164 TTE-------TDPVRAESDLAALIERRDWTIASDRMIFHGRRVCHARRPACGACAIARMC 216
Query: 124 PSAFKDSSSPSSKSR 138
PS + P+ +R
Sbjct: 217 PSFGTGPTEPAEAAR 231
>gi|289422681|ref|ZP_06424521.1| endonuclease III [Peptostreptococcus anaerobius 653-L]
gi|429728989|ref|ZP_19263680.1| endonuclease III [Peptostreptococcus anaerobius VPI 4330]
gi|289156860|gb|EFD05485.1| endonuclease III [Peptostreptococcus anaerobius 653-L]
gi|429146590|gb|EKX89641.1| endonuclease III [Peptostreptococcus anaerobius VPI 4330]
Length = 226
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 8/123 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K + I + ++ G +P +L++L+ LPG+G K A +V++ + V I VDTHV R+ NR
Sbjct: 93 IKDTSTIIVDQFGGQVPDTLEDLVKLPGVGRKTAGVVLSNAFG-VPAIAVDTHVFRVSNR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V K ++ E T L +PK+ W + LL+ G+ IC +P C +C++
Sbjct: 152 IGLV-------KENNVEATEFALMKAIPKDRWTHSHHLLIFQGRRICKARKPECHLCNIR 204
Query: 121 ELC 123
+ C
Sbjct: 205 DYC 207
>gi|350568798|ref|ZP_08937196.1| endonuclease III [Propionibacterium avidum ATCC 25577]
gi|348661041|gb|EGY77737.1| endonuclease III [Propionibacterium avidum ATCC 25577]
Length = 241
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ +A + ++DGD+P LD L+ LPG+G K A++V+ + V GI DTHV R+ R
Sbjct: 105 LVSMAAKLVDEFDGDVPEGLDSLVTLPGVGRKTANVVLGNAF-GVPGITPDTHVMRVSRR 163
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW ++P + L +WV + L+ G+ C RP CG+C V+
Sbjct: 164 LGWTD-------ATTPAKVETDLAGLFDPNDWVMLCHRLIWHGRRRCHSRRPACGVCPVA 216
Query: 121 ELCPSAFKDSSSPSSKS 137
E CPS + + P +
Sbjct: 217 EWCPSYGEGPTDPGEAA 233
>gi|312194230|ref|YP_004014291.1| endonuclease III [Frankia sp. EuI1c]
gi|311225566|gb|ADP78421.1| endonuclease III [Frankia sp. EuI1c]
Length = 271
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P +L+EL+ LPG+G K A++V+ ++ GI VDTHV R+ R G +Q
Sbjct: 142 RFGGEVPRTLEELVTLPGVGRKTANVVLGHAFDT-PGITVDTHVGRLSRRFGLTTQ---- 196
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
P + L + +++W + ++ G+ IC RP CG C+V++LCPS
Sbjct: 197 ---DDPVKVEADLAALIERKDWTIASDRMIFHGRRICHARRPACGACAVAKLCPS 248
>gi|425466221|ref|ZP_18845524.1| Endonuclease III [Microcystis aeruginosa PCC 9809]
gi|389831392|emb|CCI25920.1| Endonuclease III [Microcystis aeruginosa PCC 9809]
Length = 218
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P ++ ELL LPG+ K A++V+ + ++G+ VDTHV R+ NRLG +
Sbjct: 104 LKDFQGEVPKTMAELLTLPGVARKTANVVLAHAYGIIEGVTVDTHVKRLSNRLGLTTN-- 161
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ P + L LP+ +W + ++ G+ +C P C C ++ LCP+A
Sbjct: 162 -----NDPVKIERDLMALLPQPDWETFSISIIYHGRAVCKARNPACFSCQLASLCPAA 214
>gi|345016220|ref|YP_004818574.1| endonuclease III [Streptomyces violaceusniger Tu 4113]
gi|344042569|gb|AEM88294.1| endonuclease III [Streptomyces violaceusniger Tu 4113]
Length = 289
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P L++L+ LPG+G K A++V+ + V G+ VDTH R+ R W +Q
Sbjct: 138 RFGGEVPGRLEDLVTLPGVGRKTANVVLGNAFG-VPGLTVDTHFGRLVRRWKWTAQ---- 192
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
PE+ + PK EW ++ ++ G+ +C +P CG C ++ LCP A+ +
Sbjct: 193 ---EDPEKVEAEIAALFPKSEWTMLSHRIIFHGRRVCHARKPACGACPIAPLCP-AYGEG 248
Query: 131 SSPSSKSRK 139
+ K++K
Sbjct: 249 ETDPDKAKK 257
>gi|408828610|ref|ZP_11213500.1| endonuclease III [Streptomyces somaliensis DSM 40738]
Length = 288
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 9/129 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ ++P L++L+ LPG+G K A++V+ + V GI VDTH R+ R W ++
Sbjct: 129 RFGSEVPGRLEDLVTLPGVGRKTANVVLGNAFG-VPGITVDTHFGRLVRRWRWTAE---- 183
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
PE+ V+ PK EW ++ ++ G+ IC RP CG C ++ LCP A+ +
Sbjct: 184 ---EDPEKVEAVVCSLFPKSEWTMLSHRVIFHGRRICHARRPACGACPIAPLCP-AYGEG 239
Query: 131 SSPSSKSRK 139
+ K+RK
Sbjct: 240 ETDPEKARK 248
>gi|374988578|ref|YP_004964073.1| putative endonuclease III [Streptomyces bingchenggensis BCW-1]
gi|297159230|gb|ADI08942.1| putative endonuclease III [Streptomyces bingchenggensis BCW-1]
Length = 376
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P L++L+ LPG+G K A++V+ + V G+ VDTH R+ R W Q
Sbjct: 201 RFGGEVPGRLEDLVTLPGVGRKTANVVLGNAFG-VPGLTVDTHFGRLVRRWKWTGQ---- 255
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
PE+ + PK EW ++ ++ G+ +C +P CG C ++ LCPS +
Sbjct: 256 ---EDPEKVEAEIAALFPKSEWTMLSHRIIFHGRRVCHARKPACGACPIAPLCPSYGEGE 312
Query: 131 SSPSSKSRK 139
+ P K++K
Sbjct: 313 TDP-DKAKK 320
>gi|443666866|ref|ZP_21133811.1| endonuclease III [Microcystis aeruginosa DIANCHI905]
gi|159030796|emb|CAO88474.1| nth [Microcystis aeruginosa PCC 7806]
gi|443331156|gb|ELS45830.1| endonuclease III [Microcystis aeruginosa DIANCHI905]
Length = 218
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P +++ELL LPG+ K A++V+ + ++G+ VDTHV R+ NRLG +
Sbjct: 104 LKDFQGEVPKTMEELLTLPGVARKTANVVLAHAYGIIEGVTVDTHVKRLSNRLGLTTN-- 161
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ P + L LP+ +W + ++ G+ +C P C C ++ LCP+A
Sbjct: 162 -----NDPVKIELDLMALLPQPDWETFSISIIYHGRAVCKARNPTCFSCQLASLCPAA 214
>gi|375085600|ref|ZP_09732233.1| endonuclease III [Megamonas funiformis YIT 11815]
gi|374567205|gb|EHR38435.1| endonuclease III [Megamonas funiformis YIT 11815]
Length = 212
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 10 TKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGR 69
+ Y+G++P +ELL LPG+G K A++V ++ +N I VDTHV R+ NRL
Sbjct: 100 SDYNGEVPEQFEELLKLPGVGRKTANVVSSIAFNR-PAIAVDTHVFRVSNRLKLAV---- 154
Query: 70 KQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAF 127
++P++ + LQ +P E+W + L+ G+ +C P CG C + ++CPSA
Sbjct: 155 ---GNTPDEVEKGLQKAIPMEKWSDAHHWLIWHGRKLCRARNPLCGDCPLKDICPSAL 209
>gi|298675712|ref|YP_003727462.1| endonuclease III [Methanohalobium evestigatum Z-7303]
gi|298288700|gb|ADI74666.1| endonuclease III [Methanohalobium evestigatum Z-7303]
Length = 212
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A + ++++ +P ++++++ L G+G K A++V++ G+ +GI VDTHV R+ R
Sbjct: 92 IKKCAQMIKSQFNSKVPDNMNDMMELSGVGRKTANIVLSRGFGVHEGIAVDTHVKRLSQR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG + +PE+ + L K +W ++ +L+ G+ IC P C C V+
Sbjct: 152 LGLT-------QNKTPEKIEQDLMKLADKRDWDTLSLILILHGRKICHAKNPECENCVVN 204
Query: 121 ELCPSA 126
LCPS+
Sbjct: 205 TLCPSS 210
>gi|339630005|ref|YP_004721648.1| DNA-(apurinic or apyrimidinic site) lyase [Sulfobacillus
acidophilus TPY]
gi|379009107|ref|YP_005258558.1| endonuclease III [Sulfobacillus acidophilus DSM 10332]
gi|339287794|gb|AEJ41905.1| endonuclease III ;DNA-(apurinic or apyrimidinic site) lyase
[Sulfobacillus acidophilus TPY]
gi|361055369|gb|AEW06886.1| endonuclease III, DNA-(apurinic or apyrimidinic site) lyase
[Sulfobacillus acidophilus DSM 10332]
Length = 217
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+ A + Y G++P+ D L+ LPG+G K A++V++ + V + VDTHV R+ +RLG
Sbjct: 90 RTARVIAETYRGEVPADRDALMALPGVGRKTANVVLSNAFG-VDALAVDTHVFRVSHRLG 148
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W P T + L +P+ W + L+ G+ C +RP C C +++L
Sbjct: 149 W-------SNAKDPAGTEQQLMALIPQALWSKAHHWLIYHGRYCCKAVRPLCHECPLADL 201
Query: 123 CPSA 126
CPSA
Sbjct: 202 CPSA 205
>gi|432331457|ref|YP_007249600.1| endonuclease III [Methanoregula formicicum SMSP]
gi|432138166|gb|AGB03093.1| endonuclease III [Methanoregula formicicum SMSP]
Length = 214
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++ G +P ++DELL +PG+G K A++V+ +GI VDTHV R+ R+G+
Sbjct: 100 IDQFGGSVPETMDELLTIPGVGRKTANIVLYHALGKNEGIAVDTHVRRLAQRIGF----- 154
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
T + E L PK++W + +L+ G+ C +P CG C + +C
Sbjct: 155 --SDTDNVEVIERDLMAIFPKKDWGDLTDVLIAHGRVTCDAKKPLCGECVIRGMC 207
>gi|78356536|ref|YP_387985.1| endonuclease III [Desulfovibrio alaskensis G20]
gi|78218941|gb|ABB38290.1| endonuclease III [Desulfovibrio alaskensis G20]
Length = 226
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
+ G +P ++DEL LPG+ K A++V+ G+ +G+ VDTHV RI R+G+ +
Sbjct: 101 HGGQVPRTMDELTALPGLARKTANIVLWGGYGINEGLAVDTHVKRIAFRMGFTA------ 154
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDSS 131
+ +P + L P+ EW +N +V FG+ +C +P C C + + CP K
Sbjct: 155 -SDNPVVVEKDLMPLFPRAEWGDVNHRMVWFGRHVCDARKPLCHECEMFDFCPR--KGVQ 211
Query: 132 SPSSKSRKSAQK 143
+ +R SA+K
Sbjct: 212 GKKTAARASARK 223
>gi|269957812|ref|YP_003327601.1| endonuclease III [Xylanimonas cellulosilytica DSM 15894]
gi|269306493|gb|ACZ32043.1| endonuclease III [Xylanimonas cellulosilytica DSM 15894]
Length = 259
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P+ + +L+ LPG+G K A++V+ + V GI VDTH R+ R GW +
Sbjct: 132 RFGGEVPARMADLVTLPGVGRKTANVVLGNAFG-VPGITVDTHFGRLARRFGWTT----- 185
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
+ P + + P+++W ++ +V G+ IC RP CG C V+ LCPS
Sbjct: 186 --SDDPVKVEHEVGGLFPRKDWTMLSHHVVWHGRRICHAKRPACGACPVASLCPSYGAGE 243
Query: 131 SSPSSKSR 138
+ P + ++
Sbjct: 244 TDPVAAAK 251
>gi|427702712|ref|YP_007045934.1| endonuclease III [Cyanobium gracile PCC 6307]
gi|427345880|gb|AFY28593.1| endonuclease III [Cyanobium gracile PCC 6307]
Length = 215
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + ++ G +P+S++ELL LPG+ K A++V+ + G+ VDTHV R+ NRL
Sbjct: 100 LLMERHGGAVPASMEELLPLPGVARKTANVVLAHAFGINAGVTVDTHVKRLANRL----- 154
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
R + S P++ L +P+ +W ++ L+ G+ +C +PRC C +++LCPS
Sbjct: 155 --RLTRHSDPKRIEPDLMKLVPRPQWETLSIRLIFHGRAVCVARKPRCAGCGLADLCPS 211
>gi|54022312|ref|YP_116554.1| endonuclease III [Nocardia farcinica IFM 10152]
gi|54013820|dbj|BAD55190.1| putative endonuclease III [Nocardia farcinica IFM 10152]
Length = 280
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ KYDG++P +L+EL+ LPGIG K A++++ + +V GI VDTH R+ R GW ++
Sbjct: 143 VEKYDGEVPHTLEELVQLPGIGRKTANVILGNAF-DVPGITVDTHFGRLVRRWGWTTE-- 199
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
P + + + +++W ++ ++ G+ +C RP CG C +++ CPS
Sbjct: 200 -----EDPVKVEHAVGELIERKDWTMLSHRVIFHGRRVCHSRRPACGACVLAKDCPS 251
>gi|166363028|ref|YP_001655301.1| endonuclease III [Microcystis aeruginosa NIES-843]
gi|166085401|dbj|BAG00109.1| endonuclease III [Microcystis aeruginosa NIES-843]
Length = 218
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P ++ ELL LPG+ K A++V+ + ++G+ VDTHV R+ NRLG +
Sbjct: 104 LKDFQGEVPKTMGELLTLPGVARKTANVVLAHAYGIIEGVTVDTHVKRLSNRLGLTTN-- 161
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ P + L LP+ +W + ++ G+ +C P C C ++ LCP+A
Sbjct: 162 -----NDPVKIERDLMALLPQPDWETFSISIIYHGRAVCKARNPACFSCQLASLCPAA 214
>gi|345018028|ref|YP_004820381.1| endonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033371|gb|AEM79097.1| endonuclease III [Thermoanaerobacter wiegelii Rt8.B1]
Length = 216
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 8/113 (7%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
KYD +P +L+EL+ LPG+G K A++V++ ++ Q I VDTHV R+ NR+G K
Sbjct: 104 KYDSKVPETLEELMTLPGVGRKTANVVLSNAFSK-QAIAVDTHVFRVSNRIGLADS---K 159
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
++ +Q E+ +P+ W + LL+ G+ +CT +P+C C V+ LC
Sbjct: 160 DVFTTEKQLMEL----IPENLWSLSHHLLIHHGRNLCTARKPKCDECPVNHLC 208
>gi|421491292|ref|ZP_15938658.1| endonuclease III [Streptococcus anginosus SK1138]
gi|400371394|gb|EJP24353.1| endonuclease III [Streptococcus anginosus SK1138]
Length = 207
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A L +DG +P + EL L G+G K A++VM+VG+ + VDTHV RIC
Sbjct: 91 LKKCAQQLLDNFDGQVPHTRQELESLAGVGRKTANVVMSVGFG-IPAFAVDTHVERICKH 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRC 114
V +K+++P + + + LPK EW+P + ++ FG+ IC P P+C
Sbjct: 150 HDIV------KKSATPLEVEQRVMEVLPKNEWLPAHQAMICFGREICHPRNPKC 197
>gi|301058277|ref|ZP_07199317.1| endonuclease III [delta proteobacterium NaphS2]
gi|300447611|gb|EFK11336.1| endonuclease III [delta proteobacterium NaphS2]
Length = 213
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
K+ G++P++++EL+ LPG+G K A+ V+ ++ V G+ VDTHV R+ RL
Sbjct: 104 KFGGEVPATMEELIKLPGVGRKTANCVLGAAFD-VPGVVVDTHVKRLAVRLSLT------ 156
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
+ + P++ LQ LPKE W + +L+ G+ +C +P C+V LCPS
Sbjct: 157 -ENNHPDKIEMDLQKLLPKERWRRFSDILIYHGRAVCNARKPDHTACAVFSLCPS 210
>gi|373856599|ref|ZP_09599343.1| endonuclease III [Bacillus sp. 1NLA3E]
gi|372453578|gb|EHP27045.1| endonuclease III [Bacillus sp. 1NLA3E]
Length = 236
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K+ + L +YDG +P S DEL+ LPG+G K A++V +V + V I VDTHV R+ R
Sbjct: 108 IQKLCQMLLDEYDGVVPKSQDELMRLPGVGRKTANVVASVAF-GVPAIAVDTHVERVSKR 166
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ K E+T L +PKEEW + L+ FG+ C P+C C +
Sbjct: 167 LGYCRW---KDPVLEVEKT---LMKKIPKEEWSVTHHRLIFFGRYHCKAQNPQCKACPLL 220
Query: 121 ELCPSAFKDSSSPSSK 136
++C K SK
Sbjct: 221 DVCREGKKRMKKEESK 236
>gi|357636663|ref|ZP_09134538.1| endonuclease III [Streptococcus macacae NCTC 11558]
gi|357585117|gb|EHJ52320.1| endonuclease III [Streptococcus macacae NCTC 11558]
Length = 207
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 7/114 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KK A L + G +P + EL L G+G K A++VM+VG+ + VDTHV RIC
Sbjct: 91 LKKCANQLLENFGGQVPQTRKELESLSGVGRKTANVVMSVGFG-LPAFAVDTHVERICKH 149
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRC 114
V +K+++P + + + LPKEEW+P + ++ FG++IC P P C
Sbjct: 150 HNIV------KKSATPLEVEKRVMEVLPKEEWLPAHQAMINFGRSICHPQNPEC 197
>gi|331083706|ref|ZP_08332817.1| endonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
gi|330403917|gb|EGG83469.1| endonuclease III [Lachnospiraceae bacterium 6_1_63FAA]
Length = 217
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y G++P SL++L+ LPG+G K A+++ ++ + VDTHV RI RLG+
Sbjct: 100 YSGEVPRSLEDLVSLPGVGRKTANVIRGNIFHE-PSVVVDTHVKRISKRLGFT------- 151
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K PE+ + L LPKE W+ N ++ FG+ IC P+C C ++E C
Sbjct: 152 KEEDPEKIEQDLMKVLPKEHWILYNIQIITFGRQICFARSPKCEECFLTEYC 203
>gi|294791208|ref|ZP_06756365.1| endonuclease III [Scardovia inopinata F0304]
gi|294457679|gb|EFG26033.1| endonuclease III [Scardovia inopinata F0304]
Length = 210
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63
IA LT++DG +P++++EL LPG+G K A++V+ + ++ G VDTHV R+ RL W
Sbjct: 87 IAHELLTRFDGQVPATMEELTSLPGVGRKTANVVLGNAF-DLPGFPVDTHVIRVTGRLHW 145
Query: 64 VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
S + PE+ + P EW ++ L+ G+ C +P C +C V E C
Sbjct: 146 RSD--WRTAKGDPEKIETEITAAFPPSEWKDLSHRLINLGRDTCHARKPECLVCPVRESC 203
Query: 124 PS 125
PS
Sbjct: 204 PS 205
>gi|374995930|ref|YP_004971429.1| endonuclease III [Desulfosporosinus orientis DSM 765]
gi|357214296|gb|AET68914.1| endonuclease III [Desulfosporosinus orientis DSM 765]
Length = 219
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
+ + KY+G +P L+ L LPG+G K A++V + + + I VDTHV R+ +RLG S
Sbjct: 100 VLVEKYNGQVPEDLELLKELPGVGRKTANVVASNAFG-IPAIAVDTHVFRVAHRLGIAS- 157
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+PE+ + L+ P++ W ++ LL+ G+ IC+ +PRC C VS +C
Sbjct: 158 ------GKTPEKVEDELREVFPQDRWSIVHHLLIFLGRRICSARKPRCEECPVSSVC 208
>gi|425456282|ref|ZP_18835993.1| Endonuclease III [Microcystis aeruginosa PCC 9807]
gi|389802699|emb|CCI18310.1| Endonuclease III [Microcystis aeruginosa PCC 9807]
Length = 219
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L + G++P ++ ELL LPG+ K A++V+ + ++G+ VDTHV R+ NRLG +
Sbjct: 105 LKDFQGEVPKTMAELLTLPGVARKTANVVLAHAYGMIEGVTVDTHVKRLSNRLGLTTN-- 162
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
+ P + L LP+ +W + ++ G+ +C P C C ++ LCP+A
Sbjct: 163 -----NDPVKIERDLMALLPQPDWETFSISIIYHGRAVCKARNPACFSCQLAPLCPTA 215
>gi|425736476|ref|ZP_18854780.1| DNA-(apurinic or apyrimidinic site) lyase [Brevibacterium casei
S18]
gi|425478146|gb|EKU45347.1| DNA-(apurinic or apyrimidinic site) lyase [Brevibacterium casei
S18]
Length = 245
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K+A + YDG++P +++EL+ L G+G K A++V+ ++ GI VDTH+ R+ R G
Sbjct: 108 KLANDLVDDYDGEVPRTMEELVKLAGVGRKTANVVLGNAFDT-PGITVDTHMGRLARRFG 166
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W ++ + P + E + P +E ++ ++ G+ IC +P CG C + L
Sbjct: 167 WTTE-------TDPVKAEEDIAALFPTKELTLLSHRVIFHGRRICHSRKPACGACPLMAL 219
Query: 123 CPS 125
CPS
Sbjct: 220 CPS 222
>gi|433591999|ref|YP_007281495.1| endonuclease III [Natrinema pellirubrum DSM 15624]
gi|448334335|ref|ZP_21523513.1| endonuclease III [Natrinema pellirubrum DSM 15624]
gi|433306779|gb|AGB32591.1| endonuclease III [Natrinema pellirubrum DSM 15624]
gi|445620221|gb|ELY73727.1| endonuclease III [Natrinema pellirubrum DSM 15624]
Length = 227
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
L +DG++P ++DEL L G+G K A++V+ G + V+GI VDTHV R+ RLG
Sbjct: 103 LEDHDGEVPDTMDELTELSGVGRKTANVVLQHGHDIVEGIVVDTHVQRLSRRLGLTE--- 159
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+ +++++ +P+ W L + G+ +CT P CG C ++++CPS
Sbjct: 160 ---EEYPERIEEDLIEI-VPEGSWQEFTHLCIDHGRAVCTAQNPDCGDCVLADVCPSEKG 215
Query: 129 D 129
D
Sbjct: 216 D 216
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,407,234,648
Number of Sequences: 23463169
Number of extensions: 93272583
Number of successful extensions: 204212
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3365
Number of HSP's successfully gapped in prelim test: 5566
Number of HSP's that attempted gapping in prelim test: 191319
Number of HSP's gapped (non-prelim): 9425
length of query: 143
length of database: 8,064,228,071
effective HSP length: 107
effective length of query: 36
effective length of database: 9,848,636,284
effective search space: 354550906224
effective search space used: 354550906224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)