BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032317
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Guanine Complex
pdb|1ORP|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent
Intermediate: Estranged-Adenine Complex
Length = 226
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K+ + + KY+G++P DEL+ LPG+G K A++V++V + V I VDTHV R+ R
Sbjct: 93 IQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAF-GVPAIAVDTHVERVSKR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ + S + + L +PKEEW + ++ FG+ C P+C C +
Sbjct: 152 LGFC------RWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLL 205
Query: 121 ELC 123
LC
Sbjct: 206 HLC 208
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex
Length = 226
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K+ + + KY+G++P DEL+ LPG+G K A++V++ + V I VDTHV R+ R
Sbjct: 93 IQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTAF-GVPAIAVDTHVERVSKR 151
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LG+ + S + + L +PKEEW + ++ FG+ C P+C C +
Sbjct: 152 LGFC------RWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLL 205
Query: 121 ELC 123
LC
Sbjct: 206 HLC 208
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To
A Resolution Of 1.85 Angstrom
Length = 211
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMN--VGWNNVQGICVDTHVHRICNR 60
K I L +++G++P L LPG+G K A++V+N GW I VDTH+ R+CNR
Sbjct: 91 KTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGW---PTIAVDTHIFRVCNR 147
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+ PG+ + EQ E L +P E V + L+ G+ C +PRCG C +
Sbjct: 148 TQFA--PGK-----NVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIE 200
Query: 121 ELC 123
+LC
Sbjct: 201 DLC 203
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With Dg In Duplexed Dna
pdb|3FSQ|A Chain A, Muty Adenine Glycosylase Bound To A Transition State
Analog (1n) Paired With D(8-Oxog) In Duplexed Dna
Length = 369
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 10 TKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGR 69
T+Y G +P DE L G+GP V+++ + V VD +V R+ +RL V+
Sbjct: 107 TRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYG-VPEPAVDGNVMRVLSRLFLVTDD-- 163
Query: 70 KQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K S+ ++ ++++ + E N L+ G +CTP RP C +C V C
Sbjct: 164 IAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYC 217
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna
Length = 352
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 10 TKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGR 69
T+Y G +P DE L G+GP V+++ + V VD +V R+ +RL V+
Sbjct: 96 TRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYG-VPEPAVDGNVMRVLSRLFLVTDD-- 152
Query: 70 KQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K S+ ++ ++++ + E N L+ G +CTP RP C +C V C
Sbjct: 153 IAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYC 206
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
Abasic Site
pdb|1VRL|A Chain A, Muty Adenine Glycosylase In Complex With Dna And Soaked
Adenine Free Base
Length = 369
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 10 TKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGR 69
T+Y G +P DE L G+GP V+++ + V V+ +V R+ +RL V+
Sbjct: 107 TRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYG-VPEPAVNGNVMRVLSRLFLVTDD-- 163
Query: 70 KQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K S+ ++ ++++ + E N L+ G +CTP RP C +C V C
Sbjct: 164 IAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYC 217
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An
A:oxog Pair
Length = 369
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 10 TKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGR 69
T+Y G +P DE L G+GP V+++ + V V+ +V R+ +RL V+
Sbjct: 107 TRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYG-VPEPAVNGNVMRVLSRLFLVTDD-- 163
Query: 70 KQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
K S+ ++ ++++ + E N L+ G +CTP RP C +C V C
Sbjct: 164 IAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYC 217
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A + + Y G +P + +L LPG+G VM + + + VD + R+ NR
Sbjct: 95 LKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGK-KAAMVDANFVRVINR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
S + + E L +P + N L+ F IC P +P+C C +S
Sbjct: 154 YFGGSYENLNYNHKALWELAETL---VPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMS 210
Query: 121 ELC 123
+LC
Sbjct: 211 KLC 213
>pdb|3N5N|X Chain X, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
pdb|3N5N|Y Chain Y, Crystal Structure Analysis Of The Catalytic Domain And
Interdomain Connector Of Human Muty Homologue
Length = 287
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELL-LLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICN 59
+++ A + + G +P + + L LLPG+G A + ++ + G+ VD +V R+
Sbjct: 108 LQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV-VDGNVARVLC 166
Query: 60 RLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
R+ + + P T QLW ++ V N + G T+CTP RP
Sbjct: 167 RVRAIG--------ADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPL 218
Query: 114 CGMCSVSELC 123
C C V LC
Sbjct: 219 CSQCPVESLC 228
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G P + +E+ LPG+G A ++++ I +D +V R+ R
Sbjct: 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-LDGNVKRVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ + +LW E+ P N ++ G ICT +P+
Sbjct: 148 CYAVSGWPGKKEVAN---------KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPK 198
Query: 114 CGMCSVSELC 123
C +C + C
Sbjct: 199 CSLCPLQNGC 208
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G P + +E+ LPG+G A ++++ I +D +V R+ R
Sbjct: 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-LDGNVQRVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ + +LW E+ P N ++ G ICT +P+
Sbjct: 148 CYAVSGWPGKKEVEN---------KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPK 198
Query: 114 CGMCSVSELC 123
C +C + C
Sbjct: 199 CSLCPLQNGC 208
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G P + +E+ LPG+G A ++++ I +D +V R+ R
Sbjct: 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-LDGNVRRVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ + +LW E+ P N ++ G ICT +P+
Sbjct: 148 CYAVSGWPGKKEVEN---------KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPK 198
Query: 114 CGMCSVSELC 123
C +C + C
Sbjct: 199 CSLCPLQNGC 208
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G P + +E+ LPG+G A ++++ I +D +V R+ R
Sbjct: 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-LDGNVKRVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ + +LW E+ P N ++ G ICT +P+
Sbjct: 148 CYAVSGWPGKKEVEN---------KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPK 198
Query: 114 CGMCSVSELC 123
C +C + C
Sbjct: 199 CSLCPLQNGC 208
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G P + +E+ LPG+G A ++++ I +D +V R+ R
Sbjct: 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-LDGNVKRVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ + +LW E+ P N ++ G ICT +P+
Sbjct: 148 CYAVSGWPGKKEVEN---------KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPK 198
Query: 114 CGMCSVSELC 123
C +C + C
Sbjct: 199 CSLCPLQNGC 208
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G P + +E+ LPG+G A ++++ I +D +V R+ R
Sbjct: 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-LDGNVARVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ + +LW E+ P N ++ G ICT +P+
Sbjct: 148 CYAVSGWPGKKEVEN---------KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPK 198
Query: 114 CGMCSVSELC 123
C +C + C
Sbjct: 199 CSLCPLQNGC 208
>pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
pdb|1MUN|A Chain A, Catalytic Domain Of Muty From Escherichia Coli D138n
Mutant
Length = 225
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G P + +E+ LPG+G A ++++ I ++ +V R+ R
Sbjct: 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-LNGNVKRVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ + +LW E+ P N ++ G ICT +P+
Sbjct: 148 CYAVSGWPGKKEVEN---------KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPK 198
Query: 114 CGMCSVSELC 123
C +C + C
Sbjct: 199 CSLCPLQNGC 208
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G P + +E+ LPG+G A ++++ I +D +V R+ R
Sbjct: 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-LDGNVKRVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ + +LW E+ P N ++ G ICT +P+
Sbjct: 148 CYAVSGWPGKKEVEN---------KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPK 198
Query: 114 CGMCSVSELC 123
+C + C
Sbjct: 199 HSLCPLQNGC 208
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 291 LGNFFRSLWGPYAGWA 306
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 238 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 296
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 297 LGNFFRSLWGPYAGWA 312
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 291 LGNFFRSLWGPYAGWA 306
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 240 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 298
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 299 LGNFFRSLWGPYAGWA 314
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 291 LGNFFRSLWGPYAGWA 306
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 291 LGNFFRSLWGPYAGWA 306
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 237 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 295
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 296 LGNFFRSLWGPYAGWA 311
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 28.9 bits (63), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G ++A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 238 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 296
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 297 LGNFFRSLWGPYAGWA 312
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G ++A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 232 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 291 LGNFFRSLWGPYAGWA 306
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G ++A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 238 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 296
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 297 LGNFFRSLWGPYAGWA 312
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G ++A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 238 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 296
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 297 LGNFFRSLWGPYAGWA 312
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G ++A + + + Q + VD H+ I R + P Q K SP+ +E
Sbjct: 232 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 291 LGNFFRSLWGPYAGWA 306
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
pdb|1M3Q|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Base-Excised
Dna And 8-Aminoguanine
pdb|1M3H|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Product
Oligonucleotide
Length = 317
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + V+ H+ I R + P Q K SP+ +E
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVEVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 291 LGNFFRSLWGPYAGWA 306
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTREV 82
L +LPG+G K+A + + + Q + VD H+ I R + P Q QT +
Sbjct: 238 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPCPQTNKE 296
Query: 83 L-----QLWLPKEEWV 93
L LW P W
Sbjct: 297 LGNFFRSLWGPYAGWA 312
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 42 WNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQT----REVLQLWLPKEEWVPINP 97
+N +QG + + N +GW+ + G++++ + ++ R +W+ + +P+NP
Sbjct: 217 YNRLQGYIEAVQLQELRNSIGWLERLGQRKRITYSQEVLTDFRRQDMIWVLALQ-LPVNP 275
Query: 98 LLV 100
+V
Sbjct: 276 QVV 278
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-oxoguanine Glycosylase
Length = 317
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + V+ H+ I R + P Q K SP+ +E
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVNVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 291 LGNFFRSLWGPYAGWA 306
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTREV 82
L +LPG+G K+A + + + Q + VD H+ I R + P Q QT +
Sbjct: 231 LCILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPCPQTNKE 289
Query: 83 L-----QLWLPKEEWV 93
L LW P W
Sbjct: 290 LGNFFRSLWGPYAGWA 305
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H+IC+ W+ P +Q + E ++ +P E PI L
Sbjct: 17 DYHGHKICDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 61
>pdb|3VDP|A Chain A, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|B Chain B, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|C Chain C, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
pdb|3VDP|D Chain D, Structure And Biochemical Studies Of The Recombination
Mediator Protein Recr In Recfor Pathway
Length = 212
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPK----MAHLVMNVGWNNVQGI 48
++ Y + ++EL LPGIGPK +A ++N+ + V+ +
Sbjct: 14 MSYYSTSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSL 57
>pdb|3DPG|A Chain A, Sgrai With Noncognate Dna Bound
pdb|3DPG|B Chain B, Sgrai With Noncognate Dna Bound
pdb|3DVO|A Chain A, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|B Chain B, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|C Chain C, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|D Chain D, Sgrai With Cognate Dna And Calcium Bound
pdb|3DW9|A Chain A, Sgrai With Cognate Dna And Manganese Bound
pdb|3DW9|B Chain B, Sgrai With Cognate Dna And Manganese Bound
pdb|3MQ6|A Chain A, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|B Chain B, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|C Chain C, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|D Chain D, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|E Chain E, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|F Chain F, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|G Chain G, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|H Chain H, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQY|A Chain A, Sgrai With Cleaved Dna And Magnesium Bound
pdb|3MQY|B Chain B, Sgrai With Cleaved Dna And Magnesium Bound
pdb|3N78|A Chain A, Sgrai Bound To Secondary Site Dna And Mg(Ii)
pdb|3N78|B Chain B, Sgrai Bound To Secondary Site Dna And Mg(Ii)
pdb|3N7B|A Chain A, Sgrai Bound To Secondary Site Dna And Ca(Ii)
pdb|3N7B|B Chain B, Sgrai Bound To Secondary Site Dna And Ca(Ii)
Length = 338
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 62 GWVSQPGRKQKTSSPEQTREVLQLWLPKE-EWVPINPLLVGFGQTICTPIR 111
GW SQP + T SP R+V L LP+ +WV LLV Q + R
Sbjct: 124 GWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWV---SLLVPESQEVIEEFR 171
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H++C+ W+ P +Q + E ++ +P E PI L
Sbjct: 18 DYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 62
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H++C+ W+ P +Q + E ++ +P E PI L
Sbjct: 18 DYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 62
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain,
Y73c/v427c/c255t Mutant
Length = 710
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H++C+ W+ P +Q + E ++ +P E PI L
Sbjct: 18 DYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 62
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H++C+ W+ P +Q + E ++ +P E PI L
Sbjct: 18 DYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 62
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H++C+ W+ P +Q + E ++ +P E PI L
Sbjct: 18 DYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 62
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H++C+ W+ P +Q + E ++ +P E PI L
Sbjct: 18 DYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 62
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H++C+ W+ P +Q + E ++ +P E PI L
Sbjct: 18 DYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 62
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With
Covalently Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A
Covalently Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A
Covalently Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A
Covalently Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A
Covalently Bound Inhibitor Ic-4
Length = 710
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H++C+ W+ P +Q + E ++ +P E PI L
Sbjct: 18 DYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 62
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 27.3 bits (59), Expect = 3.0, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 51 DTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPL 98
D H H++C+ W+ P +Q + E ++ +P E PI L
Sbjct: 18 DYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKIT---VPFLEQCPIRGL 62
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
Length = 317
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ-KTSSPEQTRE 81
L +LPG+G K+A + + + Q + V H+ I R + P Q K SP+ +E
Sbjct: 232 LCILPGVGTKVADCICLMALDKPQAVPVQVHMWHIAQR-DYSWHPTTSQAKGPSPQTNKE 290
Query: 82 V----LQLWLPKEEWV 93
+ LW P W
Sbjct: 291 LGNFFRSLWGPYAGWA 306
>pdb|3VDU|A Chain A, Structure Of Recombination Mediator Protein Recrk21g
Mutant
Length = 212
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGP----KMAHLVMNVGWNNVQGI 48
++ Y + ++EL LPGIGP ++A ++N+ + V+ +
Sbjct: 14 MSYYSTSVAKLIEELSKLPGIGPGTAQRLAFFIINMPLDEVRSL 57
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTREV 82
L +LPG+G ++A + + + Q + VD H+ I R + P Q QT +
Sbjct: 238 LCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQR-DYSWHPTTSQAKGPCPQTNKE 296
Query: 83 L-----QLWLPKEEWV 93
L LW P W
Sbjct: 297 LGNFFRSLWGPYAGWA 312
>pdb|2DUY|A Chain A, Crystal Structure Of Competence Protein Comea-related
Protein From Thermus Thermophilus Hb8
Length = 75
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 18 SSLDELLLLPGIGPKMAHLVMN 39
+SL+EL LPGIGP +A ++
Sbjct: 24 ASLEELXALPGIGPVLARRIVE 45
>pdb|3DEL|B Chain B, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|C Chain C, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|D Chain D, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
pdb|3DEL|F Chain F, The Structure Of Ct381, The Arginine Binding Protein From
The Periplasm Chlamydia Trachomatis
Length = 242
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 17 PSSLDELLLLPGIGPKMAHLVMNVGWNN 44
PS L E+L++P G ++ HLV+ N
Sbjct: 82 PSRLKEILMIPYYGEEIKHLVLVFKGEN 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,101,547
Number of Sequences: 62578
Number of extensions: 151201
Number of successful extensions: 394
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 60
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)