BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032317
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KID2|NTHL1_BOVIN Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1
Length = 305
Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I +YDGDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 182 IKQTSAILQQRYDGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 241
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C PIRPRC C
Sbjct: 242 LRWT-----KKATKSPEETRRALEEWLPRELWSEINGLLVGFGQQTCLPIRPRCQACLNR 296
Query: 121 ELCPSA 126
LCP+A
Sbjct: 297 ALCPAA 302
>sp|P78549|NTHL1_HUMAN Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2
Length = 312
Score = 148 bits (374), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 83/126 (65%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ + I Y GDIP+S+ EL+ LPG+GPKMAHL M V W V GI VDTHVHRI NR
Sbjct: 189 IKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVDTHVHRIANR 248
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T SPE+TR L+ WLP+E W IN LLVGFGQ C P+ PRC C
Sbjct: 249 LRWT-----KKATKSPEETRAALEEWLPRELWHEINGLLVGFGQQTCLPVHPRCHACLNQ 303
Query: 121 ELCPSA 126
LCP+A
Sbjct: 304 ALCPAA 309
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans
GN=nth-1 PE=1 SV=2
Length = 298
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 7/126 (5%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K A I + GDIP SLD L LPG+GPKMA+LVM + W GI VDTHVHRI NR
Sbjct: 127 LQKTAKILKDDFSGDIPDSLDGLCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNR 186
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
LGW+ KTS+PE+T++ L++ LPK EW PIN LLVGFGQ C P+RP+CG C
Sbjct: 187 LGWI-------KTSTPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPKCGTCLCR 239
Query: 121 ELCPSA 126
CPS+
Sbjct: 240 FTCPSS 245
>sp|Q09907|NTH1_SCHPO Endonuclease III homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nth1 PE=1 SV=1
Length = 355
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 9/141 (6%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A I K+ GDIP ++++L+ LPG+GPKM +L M++ WN GI VD HVHRICN
Sbjct: 111 LKQMARILSEKFQGDIPDTVEDLMTLPGVGPKMGYLCMSIAWNKTVGIGVDVHVHRICNL 170
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W + T + EQTR LQ WLPKE W +N LVGFGQTIC P RC MC++S
Sbjct: 171 LHWCN-------TKTEEQTRAALQSWLPKELWFELNHTLVGFGQTICLPRGRRCDMCTLS 223
Query: 121 E--LCPSAFKDSSSPSSKSRK 139
LCPSAFK+ S + RK
Sbjct: 224 SKGLCPSAFKEKSGITITKRK 244
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1
Length = 300
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 85/126 (67%), Gaps = 5/126 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ I +Y+GDIP+S+ EL+ LPG+GPKMAHL M V W + GI VDTHVHRI NR
Sbjct: 177 IKQTTAILQQRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIAVDTHVHRIANR 236
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
L W K+ T +PE+TR+ L+ WLP+ W +N LLVGFGQ IC P+ PRC C
Sbjct: 237 LRWT-----KKMTKTPEETRKNLEEWLPRVLWSEVNGLLVGFGQQICLPVHPRCQACLNK 291
Query: 121 ELCPSA 126
LCP+A
Sbjct: 292 ALCPAA 297
>sp|Q08214|NTG2_YEAST DNA base excision repair N-glycosylase 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NTG2 PE=1
SV=1
Length = 380
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K+ A + + +D DIP ++ +L LPG+GPKM +L + GW + GICVD HVHR+C
Sbjct: 217 IKRTAQLLVDNFDSDIPYDIEGILSLPGVGPKMGYLTLQKGWGLIAGICVDVHVHRLCKM 276
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
WV K + E TR+ LQ+WLP W IN +LVGFGQ IC RC +C +
Sbjct: 277 WNWVDPI----KCKTAEHTRKELQVWLPHSLWYEINTVLVGFGQLICMARGKRCDLCLAN 332
Query: 121 ELCPSAFKDSSSPSSKSRKSAQK 143
++C +A + SSK + K
Sbjct: 333 DVC-NARNEKLIESSKFHQLEDK 354
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=NTH1 PE=1 SV=1
Length = 238
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 10/127 (7%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+KKIA I K +P + +L+ LPGIG KMA L M+ N GI VDTHVHRI NR
Sbjct: 121 LKKIAEILREK---GLPREMKDLISLPGIGNKMALLYMSHACNRTVGISVDTHVHRISNR 177
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+G V +T E TR L+ +P++EW IN +LVGFGQTIC RPRC C +
Sbjct: 178 IGLV-------RTRDVESTRRELERVVPRKEWKTINNILVGFGQTICVAKRPRCEECCIR 230
Query: 121 ELCPSAF 127
CPS+
Sbjct: 231 GRCPSSL 237
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=nth PE=3 SV=1
Length = 213
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 76/121 (62%), Gaps = 8/121 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
+I+ I + KY G +P SL+ELL LPG+G K A++V+ VG+ + VDTHVHRI NRLG
Sbjct: 84 EISRILVEKYGGRVPDSLEELLKLPGVGRKTANIVLWVGFKK-PALAVDTHVHRISNRLG 142
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
WV KT +PE+T E L+ LP++ W PIN +V FG+ IC P P C C +
Sbjct: 143 WV-------KTRTPEETEEALKKLLPEDLWGPINGSMVEFGRRICKPQNPLCEECFLKNH 195
Query: 123 C 123
C
Sbjct: 196 C 196
>sp|P31378|NTG1_YEAST Mitochondrial DNA base excision repair N-glycosylase 1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NTG1 PE=1 SV=1
Length = 399
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ D+P++++ELL LPG+GPKMA+L + W ++GICVD HV R+ WV
Sbjct: 218 ILQDQFSSDVPATINELLGLPGVGPKMAYLTLQKAWGKIEGICVDVHVDRLTKLWKWVD- 276
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTIC 107
QK +P+QTR LQ WLPK W IN LLVGFGQ I
Sbjct: 277 ---AQKCKTPDQTRTQLQNWLPKGLWTEINGLLVGFGQIIT 314
>sp|Q58030|Y613_METJA Putative endonuclease MJ0613 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0613 PE=3 SV=2
Length = 344
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 72/115 (62%), Gaps = 11/115 (9%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71
Y+G +P SL+ELL LPG+G K A+LV+ + +N GICVDTHVHRICNR V
Sbjct: 97 YNGKVPDSLEELLKLPGVGRKTANLVITLAFNK-DGICVDTHVHRICNRWEIVD------ 149
Query: 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC--SVSELCP 124
T +PE+T L+ LPK+ W IN LLV FG+ IC+ + +C C + E CP
Sbjct: 150 -TETPEETEFELRKKLPKKYWKVINNLLVVFGREICSS-KSKCDKCFKEIKEKCP 202
>sp|P73715|END3_SYNY3 Endonuclease III OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=nth PE=3 SV=1
Length = 219
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++DG++P ++ELL LPG+ K A++V+ + + G+ VDTHV R+ RLG
Sbjct: 108 EFDGEVPQRMEELLTLPGVARKTANVVLAHAFGILAGVTVDTHVKRLSQRLGLT------ 161
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126
K + P + L +P+ +W + ++ G+ +C +P CG C ++ LCPSA
Sbjct: 162 -KATDPIRIERDLMKLIPQPDWENFSIHIIYHGRAVCAARKPLCGECQLAHLCPSA 216
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth
PE=3 SV=1
Length = 219
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
++K++ + + Y G++P DEL+ LPG+G K A++V++V + V I VDTHV R+ R
Sbjct: 90 IQKLSKMIIEDYGGEVPRDRDELVKLPGVGRKTANVVVSVAF-GVPAIAVDTHVERVSKR 148
Query: 61 LG---WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMC 117
LG W S + + L +PKE+W + L+ FG+ C PRC C
Sbjct: 149 LGICRW---------KDSVLEVEKTLMRKVPKEDWSVTHHRLIFFGRYHCKAQSPRCAEC 199
Query: 118 SVSELC 123
+ LC
Sbjct: 200 PLLSLC 205
>sp|P46303|UVEN_MICLC Ultraviolet N-glycosylase/AP lyase OS=Micrococcus luteus (strain
ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB
9278 / NCTC 2665 / VKM Ac-2230) GN=pdg PE=1 SV=2
Length = 279
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 11/126 (8%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ--PG 68
++DG++P+ L++L+ LPG+G K A +V+ + GI VDTH R+ RLG+ + PG
Sbjct: 114 RHDGEVPARLEDLVALPGVGRKTAFVVLGNAFGQ-PGITVDTHFGRLARRLGFTDETDPG 172
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128
+ + + R V P +W ++ L+ G+ +C RP CG C ++ CPS
Sbjct: 173 KGRA----RRGRPVP----PARDWTMLSHRLIFHGRRVCHARRPACGRCPIARWCPSYAA 224
Query: 129 DSSSPS 134
+ P
Sbjct: 225 GETDPE 230
>sp|Q89AW4|END3_BUCBP Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nth PE=3 SV=1
Length = 215
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 10/126 (7%)
Query: 6 PICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVS 65
I L +Y G +P++ ++L LPG+G K A++++NV + + I VDTHV R+CNR+G+
Sbjct: 99 EILLKRYGGKVPNNREDLESLPGVGRKTANVILNVIFKK-KTIAVDTHVFRLCNRIGFA- 156
Query: 66 QPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
+ T+ +++L + +P++ + + + G+ ICT P+C C +S LC
Sbjct: 157 -----KGTTVLTVEKKLLNI-VPEKFKLNFHAWFIMHGRYICTSRVPKCSKCIISSLCE- 209
Query: 126 AFKDSS 131
FKD +
Sbjct: 210 -FKDKN 214
>sp|P63540|END3_MYCTU Endonuclease III OS=Mycobacterium tuberculosis GN=nth PE=3 SV=1
Length = 245
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P+++D+L+ LPG+G K A++++ + + GI VDTH R+ R W +
Sbjct: 110 RFGGEVPATMDKLVTLPGVGRKTANVILGNAFG-IPGITVDTHFGRLVRRWRWTT----- 163
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
P + + + + ++EW ++ ++ G+ +C RP CG+C +++ CPS
Sbjct: 164 --AEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPS 216
>sp|P63541|END3_MYCBO Endonuclease III OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=nth PE=3 SV=1
Length = 245
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
++ G++P+++D+L+ LPG+G K A++++ + + GI VDTH R+ R W +
Sbjct: 110 RFGGEVPATMDKLVTLPGVGRKTANVILGNAFG-IPGITVDTHFGRLVRRWRWTT----- 163
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
P + + + + ++EW ++ ++ G+ +C RP CG+C +++ CPS
Sbjct: 164 --AEDPVKVEQAVGELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPS 216
>sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1
Length = 211
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMN--VGWNNVQGICVDTHVHRICNR 60
K I L +++G++P L LPG+G K A++V+N GW I VDTH+ R+CNR
Sbjct: 91 KTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGW---PTIAVDTHIFRVCNR 147
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+ PG+ + EQ E L +P E V + L+ G+ C +PRCG C +
Sbjct: 148 TQFA--PGK-----NVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIE 200
Query: 121 ELC 123
+LC
Sbjct: 201 DLC 203
>sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nth PE=3 SV=1
Length = 211
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMN--VGWNNVQGICVDTHVHRICNR 60
K I L +++G++P L LPG+G K A++V+N GW I VDTH+ R+CNR
Sbjct: 91 KTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGW---PTIAVDTHIFRVCNR 147
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
+ PG+ + EQ E L +P E V + L+ G+ C +PRCG C +
Sbjct: 148 TQFA--PGK-----NVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIE 200
Query: 121 ELC 123
+LC
Sbjct: 201 DLC 203
>sp|Q9CB92|END3_MYCLE Endonuclease III OS=Mycobacterium leprae (strain TN) GN=nth PE=3
SV=2
Length = 245
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 68/123 (55%), Gaps = 8/123 (6%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
++ + ++DG++PS++ +L LPG+G K A++++ + + GI VDTH R+ R
Sbjct: 102 RLGQALVERFDGEVPSTMVDLFTLPGVGRKTANVILGNAF-GIPGITVDTHFGRLVRRWR 160
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSEL 122
W ++ P + + + +++W ++ ++ G+ +C +P CG+C +++
Sbjct: 161 WTAE-------EDPVKVEHAVGELIERDQWTLLSHRVIFHGRRVCHARKPACGVCVLAKD 213
Query: 123 CPS 125
CPS
Sbjct: 214 CPS 216
>sp|Q8KA16|END3_BUCAP Endonuclease III OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=nth PE=3 SV=1
Length = 209
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 5 APICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW- 63
A + TKY+ +PS+ EL LPG+G K A++++NV +N I VDTHV R+ NR G+
Sbjct: 93 AYLIKTKYNNKVPSNRTELESLPGVGRKTANIILNVLFNK-NTIAVDTHVFRVANRTGFA 151
Query: 64 ----VSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSV 119
V + +K P ++ + W V G+ +CT + +C C +
Sbjct: 152 KGKNVIEVEKKMIKIVPSIFKKYVHFW------------FVLHGRYVCTARQLKCKTCFI 199
Query: 120 SELC 123
+LC
Sbjct: 200 EKLC 203
>sp|P57219|END3_BUCAI Endonuclease III OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nth PE=3 SV=1
Length = 210
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I LTKY+ +P++ EL LPG+G K A++++N+ + + I VDTHV R+CNR +
Sbjct: 95 IILTKYNSIVPNNRIELESLPGVGRKTANIILNILFKK-KTIAVDTHVFRVCNRTNF--A 151
Query: 67 PGRKQKTSSPEQTREVLQLW-LPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
G+ K + + V ++ L W ++ G+ ICT + +C +C + +LC
Sbjct: 152 KGKNVKIVEEKLIKVVPSIFKLNFHSWFILH------GRYICTARKIKCNICLIFKLC 203
>sp|P44319|END3_HAEIN Endonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nth PE=3 SV=1
Length = 211
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ K++G++P + + L L G+G K A++V+N + + I VDTH+ R+CNR + +
Sbjct: 97 IEKHNGEVPENREALEALAGVGRKTANVVLNTAFGH-PTIAVDTHIFRVCNRTNFAAG-- 153
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ E L +P E V ++ L+ G+ C +PRCG C + +LC
Sbjct: 154 -----KDVVKVEEKLLKVVPNEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLC 203
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=nth PE=3 SV=1
Length = 213
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ Y +P+ EL+ LPG+G K A++V+N + + + VDTHV R+ R+G
Sbjct: 95 ILISNYQSSVPNDFKELIKLPGVGRKTANVVLNCLF-GMPTMAVDTHVFRVAKRIGLA-- 151
Query: 67 PGRKQKTSSPEQT-REVLQLWLPKEEWVP-INPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ +SPE +E+LQ+ E+W+ + L+ G+ IC +P C +C + E C
Sbjct: 152 -----RGNSPEIVEKELLQII--NEKWLTHAHHWLILHGRYICKARKPDCDICPIKEYC 203
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=nth PE=3 SV=1
Length = 210
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 20/127 (15%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I ++ Y +P+ L+ LPG+G K A++V+N + + + VDTHV R+ NR+G
Sbjct: 95 ILISNYQASVPNDFKALIKLPGVGRKTANVVLNCLF-GMPTMAVDTHVFRVANRIGLA-- 151
Query: 67 PGRKQKTSSPEQTR-EVLQL----WLPK-EEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
K +PE E+LQ+ WL W L+ G+ IC +P C +C +
Sbjct: 152 -----KGDTPEIVENELLQIIDTKWLTHAHHW------LILHGRYICKARKPDCDICPIK 200
Query: 121 ELCPSAF 127
E C F
Sbjct: 201 EYCDYYF 207
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth
PE=3 SV=1
Length = 212
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 10/127 (7%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + Y IP++ EL+ LPG+G K A++V+N + + + VDTHV R+ R+G
Sbjct: 95 ILIKNYQTSIPNNFKELVKLPGVGRKTANVVLNCLF-AMPTMAVDTHVFRVSKRIGLA-- 151
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVPI-NPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
K T++ + +E+LQ+ E+W+ + L+ G+ IC +P C +C + E C
Sbjct: 152 ---KGNTAAIVE-KELLQII--DEKWLTYAHHWLILHGRYICKARKPGCNICPIKEYCEY 205
Query: 126 AFKDSSS 132
SS
Sbjct: 206 YINTFSS 212
>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=nth PE=3 SV=1
Length = 212
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Query: 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
I + Y IP+ EL+ LPG+G K A++V+N + + + VDTHV R+ R+G
Sbjct: 95 ILIKNYQASIPNDFKELVKLPGVGRKTANVVLNCLF-AMPTMAVDTHVFRVSKRIGL--- 150
Query: 67 PGRKQKTSSPEQTREVLQLWLPKEEWVP-INPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
+ T E +E+LQ + E+W+ + LV G+ IC +P C +C + E C
Sbjct: 151 -AKGNTTVIVE--KELLQ--IIDEKWLTHAHHWLVLHGRYICKARKPSCRICHIKEYCEY 205
Query: 126 AFKDSSS 132
+S
Sbjct: 206 YINTFAS 212
>sp|O83754|END3_TREPA Endonuclease III OS=Treponema pallidum (strain Nichols) GN=nth PE=3
SV=1
Length = 211
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPG 68
+ ++ +P L LPG+G K A++V+N+G+ + I VDTH+ R R+G S G
Sbjct: 100 IERFAAQVPCDAHALESLPGVGHKTANVVLNMGF-GIPTIAVDTHILRTAPRIGLSS--G 156
Query: 69 RKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
R +P L + P+E + + ++ G+ CT RPRC C + +LC
Sbjct: 157 R-----TPRAVERDLLVVTPREFRMHAHHWILLHGRYTCTARRPRCTECCLRDLC 206
>sp|A0R567|MUTY_MYCS2 A/G-specific adenine glycosylase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=mutY PE=3 SV=1
Length = 293
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ + A + ++YD +P +D LL LPGIG A V + + VDT+V R+ R
Sbjct: 87 LHECAVVIASEYDDVVPRDVDTLLTLPGIGAYTARAVACFAYQASVPV-VDTNVRRVVTR 145
Query: 61 LGWVSQPGRKQKTSSPEQTREV--LQLWLPKEEWVP-INPLLVGFGQTICTPIRPRCGMC 117
+P TR++ + LP + P + L+ G T+CT PRCG+C
Sbjct: 146 -------AVHGAADAPASTRDLDMVAALLPPDTTAPTFSAALMELGATVCTARSPRCGIC 198
Query: 118 SVSE 121
+S
Sbjct: 199 PLSH 202
>sp|P29588|GTMR_METTF G/T mismatches repair enzyme OS=Methanobacterium thermoformicicum
PE=1 SV=1
Length = 221
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+K++A + + Y G +P + +L LPG+G VM + + + VD + R+ NR
Sbjct: 95 LKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGK-KAAMVDANFVRVINR 153
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVS 120
S + + E L +P + N L+ F IC P +P+C C +S
Sbjct: 154 YFGGSYENLNYNHKALWELAETL---VPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMS 210
Query: 121 ELC 123
+LC
Sbjct: 211 KLC 213
>sp|Q10159|MYH1_SCHPO A/G-specific adenine DNA glycosylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=myh1 PE=1 SV=1
Length = 461
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 14 GDIPSSLDELLL-LPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQK 72
+IP + DE +PG+GP A V+++ W GI VD +V R+ +R + K K
Sbjct: 135 SEIPRTGDEWAKGIPGVGPYTAGAVLSIAWKQPTGI-VDGNVIRVLSRALAIHSDCSKGK 193
Query: 73 TSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPRCGMCSVSELCPS 125
++ +W E V N L+ G CTP PRC +C +SE+C +
Sbjct: 194 ANA--------LIWKLANELVDPVRPGDFNQALMELGAITCTPQSPRCSVCPISEICKA 244
>sp|Q89A45|MUTY_BUCBP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mutY PE=3 SV=1
Length = 351
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 17/135 (12%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A I K++G P+S E++ LPGIG A +++ G+ N+ +D ++ R+ R
Sbjct: 89 IYKTAKILKQKFNGIFPNSYAEIIKLPGIGKSTAGAILSFGF-NLYSCILDGNIKRVLIR 147
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPI------NPLLVGFGQTICTPIRPRC 114
++ + + LW E PI N L+ G IC P+C
Sbjct: 148 YYSININNKYIEK----------LLWKTIESITPIYHTNKFNQALIDIGALICLKSNPKC 197
Query: 115 GMCSVSELCPSAFKD 129
+C + C S +
Sbjct: 198 NICPLKSTCKSYLNN 212
>sp|Q9UIF7|MUTYH_HUMAN A/G-specific adenine DNA glycosylase OS=Homo sapiens GN=MUTYH PE=1
SV=1
Length = 546
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELL-LLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICN 59
+++ A + + G +P + + L LLPG+G A + ++ + G+ VD +V R+
Sbjct: 183 LQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV-VDGNVARVLC 241
Query: 60 RLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
R+ + + P T QLW ++ V N + G T+CTP RP
Sbjct: 242 RVRAIG--------ADPSSTLVSQQLWGLAQQLVDPARPGDFNQAAMELGATVCTPQRPL 293
Query: 114 CGMCSVSELC 123
C C V LC
Sbjct: 294 CSQCPVESLC 303
>sp|Q05869|MUTY_SALTY A/G-specific adenine glycosylase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=mutY PE=3 SV=1
Length = 350
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G+ P + E+ LPG+G A ++++ I +D +V R+ R
Sbjct: 89 LHKAAQQVATLHGGEFPQTFAEIAALPGVGRSTAGAILSLALGKHYPI-LDGNVKRVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ ++ LW E+ P N ++ G +CT +P+
Sbjct: 148 CYAVSGWPGKKEVENT---------LWTLSEQVTPARGVERFNQAMMDLGAMVCTRSKPK 198
Query: 114 CGMCSVSELCPSAFKDSSS--PSSKSRKS 140
C +C + C +A +S S P K +++
Sbjct: 199 CTLCPLQNGCIAAAHESWSRYPGKKPKQT 227
>sp|Q99P21|MUTYH_MOUSE A/G-specific adenine DNA glycosylase OS=Mus musculus GN=Mutyh PE=2
SV=2
Length = 515
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 14 GDIPSSLDELL-LLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQK 72
G +P + + L LLPG+G A + ++ ++ V G+ VD +V R+ R+ +
Sbjct: 170 GHMPRTAETLQQLLPGVGRYTAGAIASIAFDQVTGV-VDGNVLRVLCRVRAIG------- 221
Query: 73 TSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPRCGMCSVSELC 123
+ P T LW ++ V N + G T+CTP RP C C V LC
Sbjct: 222 -ADPTSTLVSHHLWNLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSHCPVQSLC 277
>sp|O31584|YFHQ_BACSU Probable A/G-specific adenine glycosylase YfhQ OS=Bacillus subtilis
(strain 168) GN=yfhQ PE=2 SV=1
Length = 369
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 11 KYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRK 70
+Y G +P + L G+GP V+++ +N VD +V R+ +R+ + K
Sbjct: 108 EYGGIVPPDEKDFGGLKGVGPYTKGAVLSIAYNKPIP-AVDGNVMRVMSRILSIWDDIAK 166
Query: 71 QKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS 130
KT + + ++ ++ KE+ N L+ G ICTP P C +C V + C SAF++
Sbjct: 167 PKTRTI--FEDAIRAFISKEKPSEFNQGLMELGALICTPKSPSCLLCPVQQHC-SAFEEG 223
Query: 131 SS 132
+
Sbjct: 224 TE 225
>sp|P17802|MUTY_ECOLI A/G-specific adenine glycosylase OS=Escherichia coli (strain K12)
GN=mutY PE=1 SV=1
Length = 350
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A T + G P + +E+ LPG+G A ++++ I +D +V R+ R
Sbjct: 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPI-LDGNVKRVLAR 147
Query: 61 LGWVSQ-PGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
VS PG+K+ + +LW E+ P N ++ G ICT +P+
Sbjct: 148 CYAVSGWPGKKEVEN---------KLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPK 198
Query: 114 CGMCSVSELCPSAFKDS 130
C +C + C +A +S
Sbjct: 199 CSLCPLQNGCIAAANNS 215
>sp|P57617|MUTY_BUCAI A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mutY PE=3 SV=1
Length = 350
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 15/127 (11%)
Query: 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLG 62
K A I KY G P ++ LPGIG A ++++ N I +D +V RI R
Sbjct: 91 KSAQIIKKKYKGIFPDQFSNIIQLPGIGRSTAGAILSLSLNFFYPI-LDGNVKRILVRYY 149
Query: 63 WVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPI------NPLLVGFGQTICTPIRPRCGM 116
+S + +K +LW E PI N ++ G +IC I+P+C +
Sbjct: 150 GISGLLKDKKIEK--------KLWNIIESITPIHNTGKFNQGMMDIGASICISIKPKCTI 201
Query: 117 CSVSELC 123
C + + C
Sbjct: 202 CPLKKEC 208
>sp|Q8R5G2|MUTYH_RAT A/G-specific adenine DNA glycosylase OS=Rattus norvegicus GN=Mutyh
PE=2 SV=1
Length = 516
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 16/130 (12%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELL-LLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICN 59
+++ A + + G +P + + L LLPG+G A + ++ ++ V G+ VD +V R+
Sbjct: 157 LQEGARKVVEELGGHVPRTAETLQQLLPGVGRYTAGAIASIAFDQVTGV-VDGNVIRVLC 215
Query: 60 RLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPR 113
R+ + + P + LW ++ V N + G T+CTP RP
Sbjct: 216 RVRAIG--------ADPTSSFVSHHLWDLAQQLVDPARPGDFNQAAMELGATVCTPQRPL 267
Query: 114 CGMCSVSELC 123
C C V LC
Sbjct: 268 CNHCPVQSLC 277
>sp|Q8K926|MUTY_BUCAP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=mutY PE=3 SV=1
Length = 347
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K I ++ P+ +L+ LPGIG A ++++ + I ++ +V RI R
Sbjct: 89 IYKTVKIIKEEFQEKFPTGFSDLIKLPGIGRSTAGAILSLSLDYFFPI-LEGNVKRILMR 147
Query: 61 ----LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGM 116
+G+V++ +QK +++L P N ++ G ICTP P+C +
Sbjct: 148 YYGIIGYVTEKKIEQKLWY------LIELITPIHNTGSFNQGIMDIGALICTPKNPKCNL 201
Query: 117 CSVSELCPSAFKDSS 131
C + + C A+K+ +
Sbjct: 202 CPLIQKC-IAYKEKN 215
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2
Length = 1044
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV------SQPGRKQKTSSP 76
LL + GIG K A V +G + VDT+V RI RLG V + Q P
Sbjct: 584 LLEIEGIGLKSAECVRLLGLKH-HAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYP 642
Query: 77 EQTREVLQLW-----LPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
LW LP+E ++ ++ FG+ CT P C C + C
Sbjct: 643 SMDSIQKYLWPRLCKLPQETLYELHYQMITFGKVFCTKTIPNCNACPMKSEC 694
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2
Length = 1332
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 15 DIP--SSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVS-QPGRKQ 71
D+P + + LL + G+G K V + + + VDT+V RI RLGWV QP +
Sbjct: 866 DVPPDKAKEYLLSINGLGLKSVECVRLLSLHQI-AFPVDTNVGRIAVRLGWVPLQPLPDE 924
Query: 72 KTSSPEQTREVLQ-----LW-----LPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE 121
+ VL+ LW L ++ ++ ++ FG+ CT ++P C C +
Sbjct: 925 LQMHLLELYPVLESVQKYLWPRLCKLDQKTLYELHYHMITFGKVFCTKVKPNCNACPMKA 984
Query: 122 LC 123
C
Sbjct: 985 EC 986
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1
SV=2
Length = 1987
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 21 DELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVS-QPGRKQKTSSPEQT 79
D LL + G+G K V + +N+ VDT+V RI R+GWV QP + +
Sbjct: 1533 DYLLSIRGLGLKSVECVRLLTLHNL-AFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLEL 1591
Query: 80 REVLQ-----LW-----LPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELC 123
VL+ LW L + ++ L+ FG+ CT RP C C + C
Sbjct: 1592 YPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRPNCNACPMRGEC 1645
>sp|P44320|MUTY_HAEIN A/G-specific adenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mutY PE=3 SV=1
Length = 378
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Query: 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR 60
+ K A +++G+ P++ +++ L G+G A +++ N I +D +V R+ R
Sbjct: 94 LHKAAQKVRDEFNGNFPTNFEQVWALSGVGRSTAGAILSSVLNQPYPI-LDGNVKRVLAR 152
Query: 61 LGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVP------INPLLVGFGQTICTPIRPRC 114
V ++K + +LW E+ P N ++ G +C +P+C
Sbjct: 153 YFAVEGWSGEKKVEN--------RLWALTEQVTPTTRVADFNQAMMDIGAMVCMRTKPKC 204
Query: 115 GMCSVSELCPSAFKDSS 131
+C ++ C A+K+++
Sbjct: 205 DLCPLNIDC-LAYKNTN 220
>sp|O27397|OGG1_METTH Probable N-glycosylase/DNA lyase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1342 PE=3 SV=1
Length = 312
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 9 LTKYDG-DIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQP 67
+ + DG D + + LL L G+GPK+A ++ G+ + VD + RI N + P
Sbjct: 211 IRRIDGMDYDDARELLLELSGVGPKVADCILLYGFRKTEAFPVDVWIRRIMNHI----HP 266
Query: 68 GRKQKTSS 75
GR S
Sbjct: 267 GRNFNDRS 274
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
Length = 1393
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 15 DIP--SSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVS-QPGRKQ 71
D+P + + LL G+G K V + +++ VDT+V RI RLGWV QP +
Sbjct: 934 DVPPDKAKEYLLSFNGLGLKSVECVRLLTLHHL-AFPVDTNVGRIAVRLGWVPLQPLPES 992
Query: 72 KTSSPEQTREVLQ-----LW-----LPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSE 121
+ +L+ LW L ++ ++ ++ FG+ CT +P C C +
Sbjct: 993 LQLHLLEMYPMLESIQKYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMKG 1052
Query: 122 LC---PSAF 127
C SAF
Sbjct: 1053 ECRHFASAF 1061
>sp|Q9V3I8|OGG1_DROME N-glycosylase/DNA lyase OS=Drosophila melanogaster GN=Ogg1 PE=2
SV=2
Length = 343
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 21 DELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKT 73
+EL LLPGIG K+A + + +++ + VD H++RI G+K T
Sbjct: 239 EELTLLPGIGYKVADCICLMSMGHLESVPVDIHIYRIAQNYYLPHLTGQKNVT 291
>sp|Q47TY2|RECR_THEFY Recombination protein RecR OS=Thermobifida fusca (strain YX)
GN=recR PE=3 SV=1
Length = 199
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 12 YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQ 66
Y+G + + +DEL LPG+GPK A + ++ + D VHR+ N L V +
Sbjct: 2 YEGAVQNLIDELGRLPGVGPKSAQ---RIAFHLLAAETAD--VHRLVNALVAVKE 51
>sp|O70249|OGG1_RAT N-glycosylase/DNA lyase OS=Rattus norvegicus GN=Ogg1 PE=2 SV=1
Length = 345
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR-LGWVSQPGRKQ-KTSSPEQTR 80
L LPG+G K+A + + + Q + VD HV +I +R GW QP Q K SP +
Sbjct: 240 LCTLPGVGTKVADCICLMALDKPQAVPVDIHVWQIAHRDYGW--QPKTSQTKGPSPLANK 297
Query: 81 EV----LQLWLPKEEWV 93
E+ LW P W
Sbjct: 298 ELGNFFRNLWGPYAGWA 314
>sp|B3PMK3|RUVA_MYCA5 Holliday junction ATP-dependent DNA helicase RuvA OS=Mycoplasma
arthritidis (strain 158L3-1) GN=ruvA PE=3 SV=1
Length = 203
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 20 LDELLLLPGIGPKMAHLVMNVGWNNV 45
++L+ + G+GPK A ++N+GW NV
Sbjct: 69 FEDLIEIQGLGPKTAISILNIGWENV 94
>sp|O08760|OGG1_MOUSE N-glycosylase/DNA lyase OS=Mus musculus GN=Ogg1 PE=2 SV=2
Length = 345
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 23 LLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNR-LGWVSQPGRKQ-KTSSPEQTR 80
L LPG+G K+A + + + Q + VD HV +I +R GW P Q K SP +
Sbjct: 240 LCTLPGVGAKVADCICLMALDKPQAVPVDVHVWQIAHRDYGW--HPKTSQAKGPSPLANK 297
Query: 81 EV----LQLWLPKEEWV 93
E+ LW P W
Sbjct: 298 ELGNFFRNLWGPYAGWA 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,592,237
Number of Sequences: 539616
Number of extensions: 2208352
Number of successful extensions: 5200
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5052
Number of HSP's gapped (non-prelim): 96
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)