Query 032317
Match_columns 143
No_of_seqs 114 out of 1104
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 20:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fsp_A A/G-specific adenine gl 100.0 2.8E-38 9.6E-43 254.8 12.4 138 1-141 98-237 (369)
2 1orn_A Endonuclease III; DNA r 100.0 3.2E-38 1.1E-42 239.8 11.0 122 1-129 93-214 (226)
3 1kg2_A A/G-specific adenine gl 100.0 4.6E-38 1.6E-42 238.7 11.6 133 1-136 89-223 (225)
4 2abk_A Endonuclease III; DNA-r 100.0 2.8E-37 9.5E-42 232.4 11.8 118 1-126 89-206 (211)
5 3n5n_X A/G-specific adenine DN 100.0 4E-37 1.4E-41 240.6 11.6 125 1-128 108-233 (287)
6 1kea_A Possible G-T mismatches 100.0 1.3E-36 4.5E-41 230.2 12.6 124 1-129 95-219 (221)
7 1pu6_A 3-methyladenine DNA gly 99.9 2.7E-24 9.2E-29 162.3 6.6 96 1-105 97-212 (218)
8 3fhf_A Mjogg, N-glycosylase/DN 99.8 3.9E-21 1.3E-25 144.6 3.0 91 1-109 100-196 (214)
9 3i0w_A 8-oxoguanine-DNA-glycos 99.8 5E-19 1.7E-23 138.5 7.0 97 1-105 184-287 (290)
10 3fhg_A Mjogg, N-glycosylase/DN 99.8 1.1E-19 3.8E-24 136.0 3.0 91 1-108 89-188 (207)
11 3n0u_A Probable N-glycosylase/ 99.8 2.3E-19 8E-24 135.3 4.1 101 2-103 107-213 (219)
12 2h56_A DNA-3-methyladenine gly 99.8 6.4E-19 2.2E-23 134.1 5.5 101 1-106 111-218 (233)
13 4b21_A Probable DNA-3-methylad 99.7 7.7E-18 2.6E-22 128.1 7.5 80 1-89 122-213 (232)
14 2xhi_A N-glycosylase/DNA lyase 99.7 3.1E-17 1.1E-21 131.8 9.6 65 1-65 223-298 (360)
15 3s6i_A DNA-3-methyladenine gly 99.6 6.8E-16 2.3E-20 117.0 10.2 80 1-89 111-202 (228)
16 2yg9_A DNA-3-methyladenine gly 99.6 1.4E-16 4.7E-21 120.6 5.5 83 1-98 119-212 (225)
17 4e9f_A Methyl-CPG-binding doma 99.6 1.9E-16 6.3E-21 114.3 1.9 61 4-64 87-148 (161)
18 1mpg_A ALKA, 3-methyladenine D 99.6 2.8E-15 9.6E-20 116.7 8.6 87 1-99 182-273 (282)
19 2jhn_A ALKA, 3-methyladenine D 99.5 2E-14 6.9E-19 112.6 4.3 74 19-98 208-282 (295)
20 1x2i_A HEF helicase/nuclease; 96.4 0.0027 9.2E-08 38.7 3.5 38 4-41 26-66 (75)
21 1kft_A UVRC, excinuclease ABC 96.3 0.0021 7.3E-08 39.9 2.4 36 4-40 36-75 (78)
22 1z00_A DNA excision repair pro 96.3 0.0034 1.2E-07 39.9 3.3 40 3-42 30-72 (89)
23 2a1j_B DNA excision repair pro 96.2 0.0035 1.2E-07 40.1 3.1 38 4-41 44-84 (91)
24 2ztd_A Holliday junction ATP-d 96.0 0.0038 1.3E-07 46.4 3.0 42 3-44 99-146 (212)
25 1ixr_A Holliday junction DNA h 96.0 0.0054 1.8E-07 44.8 3.6 42 3-44 83-130 (191)
26 2duy_A Competence protein come 95.9 0.0047 1.6E-07 38.0 2.6 23 19-41 25-47 (75)
27 1cuk_A RUVA protein; DNA repai 95.8 0.0058 2E-07 45.1 3.2 39 3-41 84-128 (203)
28 3vdp_A Recombination protein R 95.6 0.0094 3.2E-07 44.1 3.5 28 18-45 23-50 (212)
29 2duy_A Competence protein come 95.4 0.01 3.6E-07 36.4 2.8 35 3-40 38-72 (75)
30 2i5h_A Hypothetical protein AF 95.3 0.0064 2.2E-07 44.7 1.8 44 16-64 127-170 (205)
31 1vdd_A Recombination protein R 95.3 0.013 4.6E-07 43.7 3.5 27 19-45 10-36 (228)
32 2edu_A Kinesin-like protein KI 95.3 0.02 6.8E-07 37.1 3.9 23 19-41 38-60 (98)
33 1s5l_U Photosystem II 12 kDa e 95.1 0.0099 3.4E-07 41.0 2.2 23 18-40 60-82 (134)
34 3arc_U Photosystem II 12 kDa e 94.9 0.0099 3.4E-07 38.8 1.7 24 18-41 23-46 (97)
35 2a1j_A DNA repair endonuclease 94.5 0.027 9.3E-07 33.6 2.8 22 20-41 3-24 (63)
36 2edu_A Kinesin-like protein KI 94.3 0.029 1E-06 36.2 2.8 21 21-41 70-90 (98)
37 1z00_B DNA repair endonuclease 93.6 0.051 1.7E-06 34.4 2.9 23 19-41 16-38 (84)
38 2kp7_A Crossover junction endo 93.0 0.15 5.2E-06 32.4 4.5 23 18-40 55-77 (87)
39 1ixr_A Holliday junction DNA h 93.0 0.063 2.2E-06 39.1 3.0 20 21-40 72-91 (191)
40 2ztd_A Holliday junction ATP-d 92.8 0.071 2.4E-06 39.5 3.0 36 21-58 88-126 (212)
41 2bcq_A DNA polymerase lambda; 92.5 0.17 5.8E-06 39.8 5.0 33 9-42 46-78 (335)
42 2fmp_A DNA polymerase beta; nu 92.5 0.19 6.7E-06 39.4 5.4 33 9-42 46-78 (335)
43 3arc_U Photosystem II 12 kDa e 92.4 0.12 4E-06 33.6 3.3 36 3-41 37-72 (97)
44 3c1y_A DNA integrity scanning 92.2 0.13 4.4E-06 41.3 4.0 37 3-39 326-365 (377)
45 1cuk_A RUVA protein; DNA repai 91.8 0.099 3.4E-06 38.4 2.7 20 21-40 73-92 (203)
46 1z00_A DNA excision repair pro 91.6 0.14 4.8E-06 32.2 3.0 21 20-40 18-38 (89)
47 2ihm_A POL MU, DNA polymerase 91.6 0.22 7.4E-06 39.6 4.7 33 9-42 50-82 (360)
48 4glx_A DNA ligase; inhibitor, 91.5 0.13 4.4E-06 43.6 3.5 50 3-61 523-576 (586)
49 1dgs_A DNA ligase; AMP complex 91.3 0.17 6E-06 43.4 4.1 39 3-41 518-559 (667)
50 1kft_A UVRC, excinuclease ABC 90.7 0.083 2.8E-06 32.5 1.2 22 21-43 24-45 (78)
51 2a1j_B DNA excision repair pro 90.7 0.2 6.8E-06 31.7 3.0 21 20-40 31-51 (91)
52 1s5l_U Photosystem II 12 kDa e 90.4 0.29 9.9E-06 33.6 3.8 36 3-41 74-109 (134)
53 1x2i_A HEF helicase/nuclease; 90.3 0.24 8.1E-06 29.7 3.0 22 21-43 14-35 (75)
54 1jms_A Terminal deoxynucleotid 89.9 0.34 1.2E-05 38.8 4.5 33 9-42 69-101 (381)
55 2w9m_A Polymerase X; SAXS, DNA 88.9 0.19 6.4E-06 42.3 2.3 27 16-42 92-118 (578)
56 2owo_A DNA ligase; protein-DNA 88.9 0.33 1.1E-05 41.7 3.8 39 3-41 523-564 (671)
57 2fmp_A DNA polymerase beta; nu 88.6 0.16 5.4E-06 40.0 1.6 25 17-41 94-118 (335)
58 1vq8_Y 50S ribosomal protein L 88.2 0.092 3.1E-06 39.6 0.0 30 19-48 13-42 (241)
59 2ihm_A POL MU, DNA polymerase 87.6 0.2 6.7E-06 39.8 1.6 25 16-40 97-121 (360)
60 2bcq_A DNA polymerase lambda; 87.1 0.33 1.1E-05 38.1 2.6 20 21-40 96-115 (335)
61 3b0x_A DNA polymerase beta fam 86.7 0.3 1E-05 41.0 2.3 25 16-40 88-112 (575)
62 1jms_A Terminal deoxynucleotid 86.1 0.27 9.1E-06 39.4 1.6 25 16-40 116-140 (381)
63 3sgi_A DNA ligase; HET: DNA AM 83.4 0.22 7.6E-06 42.3 0.0 38 4-41 541-581 (615)
64 3bqs_A Uncharacterized protein 82.1 0.43 1.5E-05 30.6 1.0 43 20-63 3-45 (93)
65 3r8n_M 30S ribosomal protein S 81.3 1.1 3.7E-05 29.9 2.7 30 13-42 5-37 (114)
66 3b0x_A DNA polymerase beta fam 79.3 1.2 4.2E-05 37.2 3.1 36 3-38 104-145 (575)
67 1ci4_A Protein (barrier-TO-aut 79.0 6.8 0.00023 24.8 5.8 53 17-86 14-66 (89)
68 2bgw_A XPF endonuclease; hydro 77.2 1.6 5.4E-05 31.7 2.8 19 22-40 163-181 (219)
69 2nrt_A Uvrabc system protein C 76.6 1.6 5.5E-05 32.4 2.7 23 21-44 168-190 (220)
70 2rhf_A DNA helicase RECQ; HRDC 76.5 1.7 6E-05 26.3 2.5 20 16-35 42-61 (77)
71 3u5c_S 40S ribosomal protein S 76.4 1.6 5.4E-05 30.4 2.5 28 15-42 21-51 (146)
72 2xzm_M RPS18E; ribosome, trans 75.1 2 6.8E-05 30.1 2.7 22 20-41 29-50 (155)
73 3mab_A Uncharacterized protein 74.7 0.97 3.3E-05 29.0 0.9 26 20-45 3-28 (93)
74 3j20_O 30S ribosomal protein S 74.6 1.9 6.4E-05 30.0 2.5 28 15-42 14-44 (148)
75 3iz6_M 40S ribosomal protein S 74.4 2.2 7.5E-05 29.8 2.8 29 14-42 18-49 (152)
76 2kv2_A Bloom syndrome protein; 74.4 2.1 7.1E-05 26.6 2.5 18 16-33 44-61 (85)
77 1z3e_B DNA-directed RNA polyme 74.3 2.3 7.9E-05 25.9 2.6 24 18-41 38-61 (73)
78 1wud_A ATP-dependent DNA helic 73.5 2.2 7.6E-05 26.7 2.4 19 16-34 50-68 (89)
79 2w9m_A Polymerase X; SAXS, DNA 72.8 2.8 9.4E-05 35.1 3.5 34 3-37 108-147 (578)
80 1exn_A 5'-exonuclease, 5'-nucl 71.4 1.8 6.3E-05 33.3 2.0 16 25-40 207-222 (290)
81 2e1f_A Werner syndrome ATP-dep 68.8 3.2 0.00011 26.8 2.5 21 16-36 52-72 (103)
82 2dgz_A Werner syndrome protein 68.4 2.1 7.2E-05 28.3 1.5 17 16-32 59-75 (113)
83 2vqe_M 30S ribosomal protein S 67.9 1.8 6.2E-05 29.3 1.1 29 13-41 6-37 (126)
84 3q8k_A Flap endonuclease 1; he 67.8 2.6 8.8E-05 33.1 2.2 16 25-40 236-251 (341)
85 3gfk_B DNA-directed RNA polyme 67.0 3.9 0.00013 25.3 2.5 24 17-40 44-67 (79)
86 3bzc_A TEX; helix-turn-helix, 66.8 3.7 0.00013 35.9 3.1 24 18-41 505-528 (785)
87 2rrd_A BLM HRDC domain, HRDC d 66.4 3.8 0.00013 26.4 2.4 20 16-35 59-78 (101)
88 3k4g_A DNA-directed RNA polyme 66.0 4.4 0.00015 25.5 2.6 24 18-41 41-64 (86)
89 3c65_A Uvrabc system protein C 65.9 1.3 4.3E-05 33.1 0.0 23 21-44 173-195 (226)
90 1b22_A DNA repair protein RAD5 65.5 3.5 0.00012 27.3 2.2 25 18-42 55-79 (114)
91 1vq8_Y 50S ribosomal protein L 65.3 1.3 4.5E-05 33.2 0.0 24 18-41 45-68 (241)
92 1rxw_A Flap structure-specific 59.9 4.4 0.00015 31.4 2.2 16 25-40 239-254 (336)
93 3ory_A Flap endonuclease 1; hy 58.5 4.7 0.00016 31.9 2.1 16 25-40 255-270 (363)
94 2izo_A FEN1, flap structure-sp 58.4 4.7 0.00016 31.4 2.1 16 25-40 238-253 (346)
95 3psf_A Transcription elongatio 58.2 6 0.0002 35.6 2.9 37 4-41 729-768 (1030)
96 3bzc_A TEX; helix-turn-helix, 57.6 12 0.00042 32.6 4.7 59 4-63 520-589 (785)
97 4gfj_A Topoisomerase V; helix- 57.4 6.3 0.00021 32.5 2.6 21 20-40 467-487 (685)
98 2ziu_A MUS81 protein; helix-ha 57.3 6.4 0.00022 30.0 2.6 20 21-40 237-256 (311)
99 3im1_A Protein SNU246, PRE-mRN 56.7 7.7 0.00026 29.8 3.0 32 3-38 143-174 (328)
100 1coo_A RNA polymerase alpha su 56.6 8.1 0.00028 24.9 2.6 24 18-41 53-76 (98)
101 1a76_A Flap endonuclease-1 pro 56.4 5.5 0.00019 30.8 2.1 16 25-40 229-244 (326)
102 3qe9_Y Exonuclease 1; exonucle 54.7 5.6 0.00019 31.2 2.0 17 24-40 228-244 (352)
103 1b43_A Protein (FEN-1); nuclea 54.7 6 0.0002 30.7 2.1 16 25-40 241-256 (340)
104 1ul1_X Flap endonuclease-1; pr 52.9 6.7 0.00023 31.0 2.2 15 26-40 237-251 (379)
105 3e1s_A Exodeoxyribonuclease V, 51.7 4.5 0.00015 33.8 1.0 36 4-39 23-62 (574)
106 1wcn_A Transcription elongatio 48.1 19 0.00064 21.4 3.2 24 18-41 37-60 (70)
107 1u9l_A Transcription elongatio 47.8 20 0.00067 21.4 3.2 24 18-41 36-59 (70)
108 2q0z_X Protein Pro2281; SEC63, 47.0 11 0.00036 29.2 2.4 33 3-39 147-179 (339)
109 3psi_A Transcription elongatio 45.9 12 0.00041 34.4 2.8 37 4-41 726-765 (1219)
110 4ic1_A Uncharacterized protein 45.8 5.9 0.0002 28.5 0.7 15 111-125 189-203 (206)
111 1jx4_A DNA polymerase IV (fami 38.5 23 0.00079 27.3 3.2 21 23-43 180-200 (352)
112 3bbn_M Ribosomal protein S13; 38.3 2.7 9.2E-05 29.1 -2.0 28 14-41 52-82 (145)
113 2va8_A SSO2462, SKI2-type heli 37.0 28 0.00096 29.2 3.7 29 16-44 652-680 (715)
114 1rq6_A 30S ribosomal protein S 35.2 20 0.00068 21.1 1.7 21 1-21 9-29 (62)
115 4dez_A POL IV 1, DNA polymeras 34.8 22 0.00074 27.5 2.5 20 24-43 181-200 (356)
116 2zix_A Crossover junction endo 34.7 3 0.0001 32.0 -2.5 20 20-39 232-251 (307)
117 1im4_A DBH; DNA polymerase PAL 33.9 22 0.00077 25.7 2.3 20 23-42 186-205 (221)
118 3htm_A Speckle-type POZ protei 33.6 68 0.0023 21.3 4.7 76 7-92 59-137 (172)
119 1dgs_A DNA ligase; AMP complex 33.5 23 0.00079 30.3 2.6 36 3-38 452-492 (667)
120 3bq0_A POL IV, DBH, DNA polyme 33.3 22 0.00076 27.4 2.3 21 23-43 181-201 (354)
121 3psf_A Transcription elongatio 33.3 14 0.00049 33.3 1.3 23 19-41 715-737 (1030)
122 1qz7_B Axin; beta-catenin, pro 32.4 7 0.00024 23.4 -0.6 24 40-63 29-52 (70)
123 3j20_S 30S ribosomal protein S 30.9 22 0.00076 21.2 1.5 19 2-20 10-28 (67)
124 1t57_A Conserved protein MTH16 30.0 33 0.0011 25.0 2.5 50 4-54 118-168 (206)
125 2p6r_A Afuhel308 helicase; pro 29.8 42 0.0014 28.2 3.6 29 16-44 627-655 (702)
126 3psi_A Transcription elongatio 28.0 20 0.00068 33.0 1.3 23 19-41 712-734 (1219)
127 2i5h_A Hypothetical protein AF 27.4 34 0.0012 24.9 2.2 29 3-32 143-173 (205)
128 2zj8_A DNA helicase, putative 26.9 33 0.0011 28.9 2.4 28 16-43 641-668 (720)
129 2pa8_D DNA-directed RNA polyme 25.4 23 0.0008 26.4 1.1 40 27-66 18-67 (265)
130 3osn_A DNA polymerase IOTA; ho 25.1 37 0.0013 27.1 2.3 21 23-43 236-256 (420)
131 4f4y_A POL IV, DNA polymerase 24.8 29 0.00098 27.1 1.6 20 24-43 182-201 (362)
132 3f5b_A Aminoglycoside N(6')ace 23.4 52 0.0018 21.2 2.5 39 27-65 109-152 (182)
133 3gqc_A DNA repair protein REV1 23.4 44 0.0015 27.5 2.5 21 23-43 317-337 (504)
134 4glx_A DNA ligase; inhibitor, 23.3 49 0.0017 27.9 2.7 21 19-39 478-498 (586)
135 4eoz_A Speckle-type POZ protei 23.3 34 0.0012 22.1 1.5 39 7-45 50-88 (145)
136 2owo_A DNA ligase; protein-DNA 22.9 90 0.0031 26.7 4.3 20 19-38 478-497 (671)
137 1o4w_A PIN (PILT N-terminus) d 21.6 24 0.00083 23.5 0.5 24 37-60 14-38 (147)
138 1t94_A Polymerase (DNA directe 20.7 52 0.0018 26.4 2.3 20 23-42 284-303 (459)
139 2vkp_A BTB/POZ domain-containi 20.5 51 0.0018 20.1 1.9 38 7-45 37-74 (109)
140 2aq4_A DNA repair protein REV1 20.4 49 0.0017 26.4 2.1 17 23-39 243-259 (434)
No 1
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=2.8e-38 Score=254.79 Aligned_cols=138 Identities=25% Similarity=0.443 Sum_probs=123.6
Q ss_pred CHHHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCCCCHHHHH
Q 032317 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTR 80 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~~~~~~~~ 80 (143)
|+++|+.|+++|+|++|+++++|++|||||+|||++|++|+|+++ +++||+||.||+.|+|+++.+... ..++++++
T Consensus 98 l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v~Rv~~rl~~~~~~~~~--~~~~~~~~ 174 (369)
T 3fsp_A 98 LHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVP-EPAVDGNVMRVLSRLFLVTDDIAK--PSTRKRFE 174 (369)
T ss_dssp HHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHTTCCSCTTS--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHHCCCC-cccccHHHHHHHHHHcCcccCccc--cchHHHHH
Confidence 578999999999999999999999999999999999999999995 899999999999999988643221 34678899
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHHhccCCCCCCCCCCcCccCcccccC--CCCCCCcccccc
Q 032317 81 EVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKD--SSSPSSKSRKSA 141 (143)
Q Consensus 81 ~~l~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~CpL~~~C~~~~~~--~~~~~~~~~~~~ 141 (143)
+.+++++|.+.|++||++||+||+.+|++++|+|+.|||++.|.++..+ ..+|.+++|++.
T Consensus 175 ~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~PvK~~kk~~ 237 (369)
T 3fsp_A 175 QIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAV 237 (369)
T ss_dssp HHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCC
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHHhcCCCCCCCCCCCChhhhHHHhcCCcccCCccccccCc
Confidence 9999999999999999999999999999999999999999999998765 477887766554
No 2
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=100.00 E-value=3.2e-38 Score=239.85 Aligned_cols=122 Identities=34% Similarity=0.681 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCCCCHHHHH
Q 032317 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTR 80 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~~~~~~~~ 80 (143)
|+++|+.++++|+|++|+++++|++|||||+|||++|++|+|+++ +||||+||.|++.|+|+++. ..++++++
T Consensus 93 l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~g~~-~~~vD~~v~Rv~~rlg~~~~------~~~~~~~~ 165 (226)
T 1orn_A 93 IQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVP-AIAVDTHVERVSKRLGFCRW------DDSVLEVE 165 (226)
T ss_dssp HHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHTSSCT------TCCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHHCCCc-eeeeCHHHHHHHHHhCCCCC------CCCHHHHH
Confidence 578999999999999999999999999999999999999999995 99999999999999998753 36799999
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHHhccCCCCCCCCCCcCccCcccccC
Q 032317 81 EVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKD 129 (143)
Q Consensus 81 ~~l~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~CpL~~~C~~~~~~ 129 (143)
+.+++++|.+.|..+|++||+||+.+|++++|+|+.|||++.|.++.++
T Consensus 166 ~~l~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 214 (226)
T 1orn_A 166 KTLMKIIPKEEWSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKR 214 (226)
T ss_dssp HHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCCCGGGCTTGGGCHHHHHH
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhhhhHhhc
Confidence 9999999999999999999999999999999999999999999987653
No 3
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=100.00 E-value=4.6e-38 Score=238.73 Aligned_cols=133 Identities=24% Similarity=0.379 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCCCCHHHHH
Q 032317 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTR 80 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~~~~~~~~ 80 (143)
|+++|+.++++|+|++|+++++|++|||||+|||++|++|+++++ +++||+||+|++.|+++++.... ...++++++
T Consensus 89 l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v~Rv~~rl~~~~~~~~--~~~~~~~l~ 165 (225)
T 1kg2_A 89 LHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNVKRVLARCYAVSGWPG--KKEVENKLW 165 (225)
T ss_dssp HHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHHHHHHHHHHTCCSCTT--SHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHHHHHHHHHcCCCCCCC--ccchHHHHH
Confidence 578999999999999999999999999999999999999999996 78999999999999987653221 123567788
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHHhccCCCCCCCCCCcCccCcccccCC--CCCCCc
Q 032317 81 EVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKDS--SSPSSK 136 (143)
Q Consensus 81 ~~l~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~CpL~~~C~~~~~~~--~~~~~~ 136 (143)
+.+++++|.+.|..||++||+||+.+|++++|+|+.|||++.|.++..+. .+|.++
T Consensus 166 ~~~~~~~p~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~ 223 (225)
T 1kg2_A 166 SLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWALYPGKK 223 (225)
T ss_dssp HHHHHHCCSTTHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHHTCGGGSSCCC
T ss_pred HHHHHHCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhCHHHHcCCcccCCCCC
Confidence 88889999999999999999999999999999999999999999987653 455544
No 4
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=100.00 E-value=2.8e-37 Score=232.38 Aligned_cols=118 Identities=34% Similarity=0.602 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCCCCHHHHH
Q 032317 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTR 80 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~~~~~~~~ 80 (143)
|+++|+.+++.|+|++|+++++|++|||||+|||++|++|+++++ +||||+||.|++.|+|+.+ ..++++++
T Consensus 89 l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v~Rv~~rlgl~~-------~~~~~~~~ 160 (211)
T 2abk_A 89 IIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWP-TIAVDTHIFRVCNRTQFAP-------GKNVEQVE 160 (211)
T ss_dssp HHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHCSSC-------CSSHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHHCCCC-cCCcCHHHHHHHHHhCCCC-------CCCHHHHH
Confidence 478999999999999999999999999999999999999999986 9999999999999999753 35799999
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHHhccCCCCCCCCCCcCccCccc
Q 032317 81 EVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSA 126 (143)
Q Consensus 81 ~~l~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~CpL~~~C~~~ 126 (143)
+.+++++|.+.|+.+|++||+||+.+|++++|+|+.|||++.|.++
T Consensus 161 ~~~~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~Cpl~~~C~~~ 206 (211)
T 2abk_A 161 EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYK 206 (211)
T ss_dssp HHHHHHSCGGGTTTHHHHHHHHHHHTSCSSSCCGGGCTTGGGCCCT
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHCCCCCCCCCCCCChhhCCCc
Confidence 9999999999999999999999999999999999999999999975
No 5
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=240.55 Aligned_cols=125 Identities=24% Similarity=0.413 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHcCCCCcCcHHHHhc-CCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCCCCHHHH
Q 032317 1 MKKIAPICLTKYDGDIPSSLDELLL-LPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQT 79 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~p~~~~~L~~-lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~~~~~~~ 79 (143)
|+++|++|+++|+|++|+++++|++ |||||+|||++||+|+|+++ +++||+||+||+.|+|+++.+... ....+++
T Consensus 108 L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p-~~~VDt~V~Rv~~Rlg~i~~~~~~--~~~~~~l 184 (287)
T 3n5n_X 108 LQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQA-TGVVDGNVARVLCRVRAIGADPSS--TLVSQQL 184 (287)
T ss_dssp HHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCC-CCCCCHHHHHHHHHHTTCCSCTTS--HHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHhcCCC-CccccHHHHHHHHHhCCCCCCCCh--HHHHHHH
Confidence 5789999999999999999999999 99999999999999999995 899999999999999998642211 1112344
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHHHhccCCCCCCCCCCcCccCccccc
Q 032317 80 REVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFK 128 (143)
Q Consensus 80 ~~~l~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~CpL~~~C~~~~~ 128 (143)
+..+++.+|.+.|++||++||+||+.+|++++|+|+.|||++.|.++.+
T Consensus 185 ~~~a~~~lp~~~~~~~h~~L~~~Gr~iC~~r~P~C~~Cpl~~~C~~~~~ 233 (287)
T 3n5n_X 185 WGLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQR 233 (287)
T ss_dssp HHHHHHHSCSSCHHHHHHHHHHHHHHTSCSSSCCTTSCTTGGGCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhhHHHHh
Confidence 5556788999999999999999999999999999999999999998865
No 6
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=100.00 E-value=1.3e-36 Score=230.20 Aligned_cols=124 Identities=27% Similarity=0.490 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHh-cccCCCCCCCCCCCHHHH
Q 032317 1 MKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRL-GWVSQPGRKQKTSSPEQT 79 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl-~~~~~~~~~~~~~~~~~~ 79 (143)
|+++|+.+++.|+|++|+++++|++|||||+|||++|++|+++++ +||||+||+|++.|+ |+..... ....+++
T Consensus 95 l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~~~~~~-~~~vD~~v~Rv~~rl~gl~~~~~----~~~~~~l 169 (221)
T 1kea_A 95 LKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKK-AAMVDANFVRVINRYFGGSYENL----NYNHKAL 169 (221)
T ss_dssp HHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHTTCCC-CCCCCHHHHHHHHHHHCGGGTTC----CTTSHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHHhcCCC-cceecHHHHHHHHHHhCCCCCCC----cHHHHHH
Confidence 578999999999999999999999999999999999999999995 899999999999999 6654211 1124578
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHHHhccCCCCCCCCCCcCccCcccccC
Q 032317 80 REVLQLWLPKEEWVPINPLLVGFGQTICTPIRPRCGMCSVSELCPSAFKD 129 (143)
Q Consensus 80 ~~~l~~~~p~~~~~~~~~~l~~~G~~~C~~~~P~C~~CpL~~~C~~~~~~ 129 (143)
++.+++++|.+.|.+||++||+||+.+|++++|+|+.|||++.|.++..+
T Consensus 170 ~~~ae~~~P~~~~~~~~~~lv~~G~~~C~~~~P~C~~Cpl~~~C~~~~~~ 219 (221)
T 1kea_A 170 WELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC 219 (221)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHTSCSSSCCGGGCTTTTTCHHHHTC
T ss_pred HHHHHHhCChhhHHHHHHHHHHHHHHHcCCCCCCCCCCCChhhchhhhcC
Confidence 88999999999999999999999999999999999999999999986543
No 7
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.90 E-value=2.7e-24 Score=162.33 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHcCC----CCcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCCCCH
Q 032317 1 MKKIAPICLTKYDG----DIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSP 76 (143)
Q Consensus 1 l~~~a~~i~~~~~g----~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~~~~ 76 (143)
|+++|+.++++|+| ++|+++++|++|||||+|||++|++|+++++ +||||+||.|++.|+|+. ..++
T Consensus 97 L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~-~~~vD~~v~Ri~~rlg~~--------~~~~ 167 (218)
T 1pu6_A 97 LIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKE-VMVVDKYSYLFLKKLGIE--------IEDY 167 (218)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS-CCCCCHHHHHHHHHTTCC--------CCSH
T ss_pred HHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHHCCCC-ccccCHHHHHHHHHcCCC--------CCCH
Confidence 47899999999999 8899999999999999999999999999985 999999999999999876 2578
Q ss_pred HHHHHHHHH----hCC------------CCChhhHHHHHHHHHHH
Q 032317 77 EQTREVLQL----WLP------------KEEWVPINPLLVGFGQT 105 (143)
Q Consensus 77 ~~~~~~l~~----~~p------------~~~~~~~~~~l~~~G~~ 105 (143)
+++++.+++ ++| .+.|.+||..|+.||+.
T Consensus 168 ~~~~~~l~~~~p~~lp~~~~~~~~~~~~~~~~~~~h~liv~~Gk~ 212 (218)
T 1pu6_A 168 DELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQ 212 (218)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCcchhhhcccccchHHHHHHHHHHHHHHhhh
Confidence 999999988 565 34589999999999986
No 8
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.81 E-value=3.9e-21 Score=144.58 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=76.1
Q ss_pred CHHHHH--HHHHHcCC--CCcCcHHHHh-cCCCCcHHHHHHHHHHhcCCCcccc-ccchHHHHHHHhcccCCCCCCCCCC
Q 032317 1 MKKIAP--ICLTKYDG--DIPSSLDELL-LLPGIGPKMAHLVMNVGWNNVQGIC-VDTHVHRICNRLGWVSQPGRKQKTS 74 (143)
Q Consensus 1 l~~~a~--~i~~~~~g--~~p~~~~~L~-~lpGIG~ktA~~Il~~~~~~~~~~p-vD~~v~Rv~~Rl~~~~~~~~~~~~~ 74 (143)
|+++|+ .+.+.|+| ++|+++++|+ +|||||+|||++||+++ +. +++| |||||.|++.|+|+++...
T Consensus 100 I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~-~~~~vVDthv~Ri~~RlG~~~~~~------ 171 (214)
T 3fhf_A 100 IVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV-GY-DDVAIIDRHILRELYENNYIDEIP------ 171 (214)
T ss_dssp HHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TC-CSCCCCCHHHHHHHHHTTSSSSCC------
T ss_pred HHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CC-CCcccCcHHHHHHHHHcCCCCCCC------
Confidence 345666 77888887 7899999999 99999999999999998 55 4677 9999999999999986311
Q ss_pred CHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhccC
Q 032317 75 SPEQTREVLQLWLPKEEWVPINPLLVGFGQTICTP 109 (143)
Q Consensus 75 ~~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~~C~~ 109 (143)
+.+|...|.++|..|+.||+.+|.+
T Consensus 172 ----------k~lt~~~y~e~~~~l~~~g~~~g~~ 196 (214)
T 3fhf_A 172 ----------KTLSRRKYLEIENILRDIGEEVNLK 196 (214)
T ss_dssp ----------SSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------CcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 2355667999999999999999964
No 9
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=99.77 E-value=5e-19 Score=138.53 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHcC-------CCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCC
Q 032317 1 MKKIAPICLTKYD-------GDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKT 73 (143)
Q Consensus 1 l~~~a~~i~~~~~-------g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~ 73 (143)
|+++|+.+.+.+. .+.|+.+++|++|||||+|||++|++|+++++++||||+||+|++.|+++.+ .
T Consensus 184 I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~~~~-------~ 256 (290)
T 3i0w_A 184 LKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLYVAP-------D 256 (290)
T ss_dssp HHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHTSCT-------T
T ss_pred HHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhcCCC-------C
Confidence 4678888887532 3567889999999999999999999999999889999999999999999864 2
Q ss_pred CCHHHHHHHHHHhCCCCChhhHHHHHHHHHHH
Q 032317 74 SSPEQTREVLQLWLPKEEWVPINPLLVGFGQT 105 (143)
Q Consensus 74 ~~~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~ 105 (143)
.+++++++.+.+.+++ ..+..++.|+.+|+.
T Consensus 257 ~~~~~i~~~~~~~~~p-~~~~A~~~Lw~~~R~ 287 (290)
T 3i0w_A 257 VSLKKIRDFGREKFGS-LSGFAQQYLFYYARE 287 (290)
T ss_dssp CCHHHHHHHHHHHHGG-GHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcch-HHHHHHHHHHHhhhh
Confidence 5688999998555542 667888889999986
No 10
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.76 E-value=1.1e-19 Score=136.02 Aligned_cols=91 Identities=15% Similarity=0.247 Sum_probs=70.6
Q ss_pred CHHHHHHH-------HHHcCCCCc-CcHHHHhcCCCCcHHHHHHHHHH-hcCCCccccccchHHHHHHHhcccCCCCCCC
Q 032317 1 MKKIAPIC-------LTKYDGDIP-SSLDELLLLPGIGPKMAHLVMNV-GWNNVQGICVDTHVHRICNRLGWVSQPGRKQ 71 (143)
Q Consensus 1 l~~~a~~i-------~~~~~g~~p-~~~~~L~~lpGIG~ktA~~Il~~-~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~ 71 (143)
|+++|+.+ ++.++|..| +++++|++|||||+|||++||+| ++ . +++|||+||+|++.|+|+++.+.
T Consensus 89 l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~~-~-~~~~vD~~v~Ri~~rlg~~~~~~--- 163 (207)
T 3fhg_A 89 IIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVGY-F-DLAIIDRHIIDFMRRIGAIGETN--- 163 (207)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTTC-C-SSCCCCHHHHHHHHHTTSSCCCC---
T ss_pred HHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhCC-C-CcceecHHHHHHHHHcCCCCccc---
Confidence 35667633 556667778 88999999999999999999999 55 4 68999999999999999986311
Q ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhcc
Q 032317 72 KTSSPEQTREVLQLWLPKEEWVPINPLLVGFGQTICT 108 (143)
Q Consensus 72 ~~~~~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~~C~ 108 (143)
...++...|.++|..+++||+.+|.
T Consensus 164 ------------~k~~~~k~y~~~~~~l~~~~~~~~~ 188 (207)
T 3fhg_A 164 ------------VKQLSKSLYISFENILKSIASNLNM 188 (207)
T ss_dssp ------------CSCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred ------------cccCCHHHHHHHHHHHHHHHHHhCC
Confidence 1123445577888888888888775
No 11
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.76 E-value=2.3e-19 Score=135.34 Aligned_cols=101 Identities=19% Similarity=0.065 Sum_probs=74.7
Q ss_pred HHHHHHH---HHHcCCCCcCcHHHHh-cCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCCCCHH
Q 032317 2 KKIAPIC---LTKYDGDIPSSLDELL-LLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPE 77 (143)
Q Consensus 2 ~~~a~~i---~~~~~g~~p~~~~~L~-~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~~~~~ 77 (143)
.++|+.+ .+.+++++|+++++|+ +|||||+|||++||+| ++..++|||||||.|++.|+|+++....+.+.++|.
T Consensus 107 ~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VDthv~Ri~~rlg~~~~~~k~~t~k~y~ 185 (219)
T 3n0u_A 107 VENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILDKHVLRLMKRHGLIQEIPKGWSKKRYL 185 (219)
T ss_dssp HHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCCHHHHHHHHHTTSCSSCCSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeeecHHHHHHHHHcCCCCcCcCcCCHHHHH
Confidence 4455553 6678899999999999 9999999999999999 676579999999999999999986522222335566
Q ss_pred HHHHHHHHhCC--CCChhhHHHHHHHHH
Q 032317 78 QTREVLQLWLP--KEEWVPINPLLVGFG 103 (143)
Q Consensus 78 ~~~~~l~~~~p--~~~~~~~~~~l~~~G 103 (143)
++++.+.++-. ....+.+...|+...
T Consensus 186 ~ie~~~~~~a~~~g~~~~~ldl~lW~~~ 213 (219)
T 3n0u_A 186 YVEEILRKVAEAFGESPGKFDLYLWYLV 213 (219)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67776665432 133566666666543
No 12
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.75 E-value=6.4e-19 Score=134.06 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHc-CCC-C---c--CcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCC
Q 032317 1 MKKIAPICLTKY-DGD-I---P--SSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKT 73 (143)
Q Consensus 1 l~~~a~~i~~~~-~g~-~---p--~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~ 73 (143)
|+++|+.+++.+ +++ + | +++++|++|||||+|||++|++|+++++++||||+|+.|++.|+++... +.
T Consensus 111 I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~~~~~~~-----~~ 185 (233)
T 2h56_A 111 IRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAKWLYGNG-----EG 185 (233)
T ss_dssp HHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHHHHHSSS-----CS
T ss_pred HHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHHHhccCC-----CC
Confidence 467899988876 443 3 6 7899999999999999999999999997799999999999999887532 13
Q ss_pred CCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHh
Q 032317 74 SSPEQTREVLQLWLPKEEWVPINPLLVGFGQTI 106 (143)
Q Consensus 74 ~~~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~~ 106 (143)
.+++++++.++.+.|...|..++.+.++.+..-
T Consensus 186 ~~~~~~~~~~e~~~P~~~~a~~~lw~~~~~~~~ 218 (233)
T 2h56_A 186 DGKKLLIYHGKAWAPYETVACLYLWKAAGTFAE 218 (233)
T ss_dssp CHHHHHHHHHGGGTTCHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHHhccccccc
Confidence 578899999999999888888888888776543
No 13
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=99.72 E-value=7.7e-18 Score=128.06 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHcCCCCc-----------CcHHHHhcCCCCcHHHHHHHHHHhcCCCccccc-cchHHHHHHHhcccCCCC
Q 032317 1 MKKIAPICLTKYDGDIP-----------SSLDELLLLPGIGPKMAHLVMNVGWNNVQGICV-DTHVHRICNRLGWVSQPG 68 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~p-----------~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pv-D~~v~Rv~~Rl~~~~~~~ 68 (143)
|+++|+.+.+ |.+| +.+++|++|||||+|||++|++|+++++++||| |+||+|++.|++..+.
T Consensus 122 l~~~A~~~~~---g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~-- 196 (232)
T 4b21_A 122 IHIVAEAALN---KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSS-- 196 (232)
T ss_dssp HHHHHHHHHT---TCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSS--
T ss_pred HHHHHHHHHh---CCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCCC--
Confidence 4678888876 5554 578999999999999999999999999889999 9999999999987643
Q ss_pred CCCCCCCHHHHHHHHHHhCCC
Q 032317 69 RKQKTSSPEQTREVLQLWLPK 89 (143)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~p~ 89 (143)
..+++++++..+.+-|-
T Consensus 197 ----~~~~~~~~~~~e~w~P~ 213 (232)
T 4b21_A 197 ----KPQTEEVEKLTKPCKPY 213 (232)
T ss_dssp ----CCCHHHHHHHTGGGTTC
T ss_pred ----CCCHHHHHHHHHHccCH
Confidence 34678888887776663
No 14
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=99.71 E-value=3.1e-17 Score=131.76 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHcCCC--------Cc--CcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHh-cccC
Q 032317 1 MKKIAPICLTKYDGD--------IP--SSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRL-GWVS 65 (143)
Q Consensus 1 l~~~a~~i~~~~~g~--------~p--~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl-~~~~ 65 (143)
|+++|+.+++.|+|+ +| +.+++|++|||||+|||++|++|+++++++||||+||+|++.|+ |+..
T Consensus 223 I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri~~r~~gl~~ 298 (360)
T 2xhi_A 223 VSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHP 298 (360)
T ss_dssp HHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHHHHHHhCccc
Confidence 468999999999886 66 78999999999999999999999999988999999999999996 6653
No 15
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=99.65 E-value=6.8e-16 Score=117.01 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHcCCCCcCc-----------HHHHhcCCCCcHHHHHHHHHHhcCCCcccccc-chHHHHHHHhcccCCCC
Q 032317 1 MKKIAPICLTKYDGDIPSS-----------LDELLLLPGIGPKMAHLVMNVGWNNVQGICVD-THVHRICNRLGWVSQPG 68 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~p~~-----------~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD-~~v~Rv~~Rl~~~~~~~ 68 (143)
|+++|+.+.+ |++|+. +++|++|||||+|||++||+|+++++++|||| .|++|++.|++..+.
T Consensus 111 i~~~A~~~~~---g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~r~~~~~~~~~~-- 185 (228)
T 3s6i_A 111 LKSIAEATIS---GLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRNGYRYLHRLPK-- 185 (228)
T ss_dssp HHHHHHHHHH---TSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSS--
T ss_pred HHHHHHHHHc---CCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHHHHHHHHhCCCC--
Confidence 4678888774 777643 89999999999999999999999998899995 679999999976542
Q ss_pred CCCCCCCHHHHHHHHHHhCCC
Q 032317 69 RKQKTSSPEQTREVLQLWLPK 89 (143)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~p~ 89 (143)
..+++++.+..+.+-|.
T Consensus 186 ----~~~~~~~~~~~e~w~P~ 202 (228)
T 3s6i_A 186 ----IPTKMYVLKHSEICAPF 202 (228)
T ss_dssp ----CCCHHHHHHHHGGGTTC
T ss_pred ----CCCHHHHHHHHHHhCCH
Confidence 35688888888887774
No 16
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.64 E-value=1.4e-16 Score=120.58 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHcCCCC--------cCc--HHHHhcCCCCcHHHHHHHHHHhcCCCccccc-cchHHHHHHHhcccCCCCC
Q 032317 1 MKKIAPICLTKYDGDI--------PSS--LDELLLLPGIGPKMAHLVMNVGWNNVQGICV-DTHVHRICNRLGWVSQPGR 69 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~--------p~~--~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pv-D~~v~Rv~~Rl~~~~~~~~ 69 (143)
|+++|+.+.+ |.+ |.+ +++|++|||||+|||++|++|+++++++||| |+||+|++.|++ + +
T Consensus 119 i~~lA~~~~~---g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~--~-~-- 190 (225)
T 2yg9_A 119 VQAAAAAAVS---GQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLY--P-G-- 190 (225)
T ss_dssp HHHHHHHHHT---TSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHS--T-T--
T ss_pred HHHHHHHHHh---CCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhC--C-H--
Confidence 4678888876 322 544 8999999999999999999999999889999 999999999998 1 1
Q ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHH
Q 032317 70 KQKTSSPEQTREVLQLWLPKEEWVPINPL 98 (143)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~ 98 (143)
+++++.++.+.|...|..+|.+
T Consensus 191 -------~~~~~~~e~~~P~r~~a~~~Lw 212 (225)
T 2yg9_A 191 -------EDWRDVTARWAPYRSLASRYLW 212 (225)
T ss_dssp -------SCHHHHHHHHTTCHHHHHHHHH
T ss_pred -------HHHHHHHHHcCCHHHHHHHHHH
Confidence 1366778888886666665544
No 17
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.59 E-value=1.9e-16 Score=114.31 Aligned_cols=61 Identities=16% Similarity=-0.034 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCC-CccccccchHHHHHHHhccc
Q 032317 4 IAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNN-VQGICVDTHVHRICNRLGWV 64 (143)
Q Consensus 4 ~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~-~~~~pvD~~v~Rv~~Rl~~~ 64 (143)
-|+.|++-++|.+|+++++|++|||||+|||++|++|++|+ ..++|+|+|++|++.++.-.
T Consensus 87 KAk~i~~~a~~~vp~~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl~~~ 148 (161)
T 4e9f_A 87 RAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWEN 148 (161)
T ss_dssp HHHHHHHHHHHHHHSCCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcCCCChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHHHcC
Confidence 57888888999999999999999999999999999999995 35889999999999987543
No 18
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=99.59 E-value=2.8e-15 Score=116.69 Aligned_cols=87 Identities=22% Similarity=0.370 Sum_probs=73.0
Q ss_pred CHHHHHHHHHH-cCCCCcCc----HHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCCCC
Q 032317 1 MKKIAPICLTK-YDGDIPSS----LDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSS 75 (143)
Q Consensus 1 l~~~a~~i~~~-~~g~~p~~----~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~~~ 75 (143)
|+++|+.+.+. ++++.+.+ +++|++|||||+|||++|++|+++++++||||+|+.| .++. ..+
T Consensus 182 i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r--~~l~----------~~~ 249 (282)
T 1mpg_A 182 LIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIK--QRFP----------GMT 249 (282)
T ss_dssp HHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHH--HHST----------TCC
T ss_pred HHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHH--HHhc----------cCC
Confidence 46889999986 78777644 7999999999999999999999999889999999877 5552 357
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHH
Q 032317 76 PEQTREVLQLWLPKEEWVPINPLL 99 (143)
Q Consensus 76 ~~~~~~~l~~~~p~~~~~~~~~~l 99 (143)
++++++.++.+.|...|..+|.+.
T Consensus 250 ~~~~~~~~~~~~P~r~~a~~~lw~ 273 (282)
T 1mpg_A 250 PAQIRRYAERWKPWRSYALLHIWY 273 (282)
T ss_dssp HHHHHHHHGGGTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999988877777777664
No 19
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=99.47 E-value=2e-14 Score=112.57 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=56.9
Q ss_pred cHHHHhcCCCCcHHHHHHHHHHhcCCCcccccc-chHHHHHHHhcccCCCCCCCCCCCHHHHHHHHHHhCCCCChhhHHH
Q 032317 19 SLDELLLLPGIGPKMAHLVMNVGWNNVQGICVD-THVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINP 97 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD-~~v~Rv~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~ 97 (143)
.+++|++|||||+|||++|++|+++ +++|||| .|++|++.|++.... +..+++++++.++.+-|...|..+|.
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g~~~-----~~~~~~~~~~~~e~~~p~r~~a~~~L 281 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRRAVSRLYFNGE-----IQSAEKVREIARERFGRFARDILFYL 281 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHSTTC-----CCCHHHHHHHHHHHTGGGHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHHHHHHHhcCCC-----CCCCHHHHHHHHHhcccHHHHHHHHH
Confidence 4899999999999999999999999 8899995 556669999853321 03568889998888777544544444
Q ss_pred H
Q 032317 98 L 98 (143)
Q Consensus 98 ~ 98 (143)
+
T Consensus 282 w 282 (295)
T 2jhn_A 282 F 282 (295)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.44 E-value=0.0027 Score=38.72 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=27.8
Q ss_pred HHHHHHHHcCC---CCcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 4 IAPICLTKYDG---DIPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 4 ~a~~i~~~~~g---~~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.|+.|++.|++ -+-.+.++|.++||||+++|..|..+.
T Consensus 26 ~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 26 LARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp HHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHH
Confidence 57777888764 112466888888888888888887765
No 21
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.28 E-value=0.0021 Score=39.92 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCCC----cCcHHHHhcCCCCcHHHHHHHHHH
Q 032317 4 IAPICLTKYDGDI----PSSLDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 4 ~a~~i~~~~~g~~----p~~~~~L~~lpGIG~ktA~~Il~~ 40 (143)
.|+.|.+.|+. + ..+.++|.++||||+++|..|..+
T Consensus 36 ~A~~Ll~~fgs-l~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 36 RRQMLLKYMGG-LQGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHHHHHSC-HHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 46677777754 2 235677777888888877777655
No 22
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.26 E-value=0.0034 Score=39.93 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCC---CcCcHHHHhcCCCCcHHHHHHHHHHhc
Q 032317 3 KIAPICLTKYDGD---IPSSLDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 3 ~~a~~i~~~~~g~---~p~~~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
+.|+.|.+.||+- +..+.++|.++||||+++|..|..+.-
T Consensus 30 ~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 30 TDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3577777777641 124667888888888888888877763
No 23
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.18 E-value=0.0035 Score=40.12 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCC---CcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 4 IAPICLTKYDGD---IPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 4 ~a~~i~~~~~g~---~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.|+.|.+.||+- +..+.++|.++||||+++|..|..+.
T Consensus 44 ~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 44 DSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHH
Confidence 466667776541 12456777777777777777776665
No 24
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.03 E-value=0.0038 Score=46.39 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCC------CCcCcHHHHhcCCCCcHHHHHHHHHHhcCC
Q 032317 3 KIAPICLTKYDG------DIPSSLDELLLLPGIGPKMAHLVMNVGWNN 44 (143)
Q Consensus 3 ~~a~~i~~~~~g------~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~ 44 (143)
++|..|++.|+- .+-+|.+.|.++||||+|||.-|..-.-++
T Consensus 99 k~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 99 RLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 467788888775 235688999999999999999998777655
No 25
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=95.99 E-value=0.0054 Score=44.83 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCC------CCcCcHHHHhcCCCCcHHHHHHHHHHhcCC
Q 032317 3 KIAPICLTKYDG------DIPSSLDELLLLPGIGPKMAHLVMNVGWNN 44 (143)
Q Consensus 3 ~~a~~i~~~~~g------~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~ 44 (143)
+.|..|++.|+. ..-.+.++|.++||||+|||.-|....-++
T Consensus 83 k~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 83 KVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 467788888876 235688999999999999999998766443
No 26
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=95.91 E-value=0.0047 Score=38.02 Aligned_cols=23 Identities=48% Similarity=0.836 Sum_probs=20.5
Q ss_pred cHHHHhcCCCCcHHHHHHHHHHh
Q 032317 19 SLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
+.++|.++||||+++|..|+.+-
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR 47 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc
Confidence 56889999999999999999863
No 27
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=95.82 E-value=0.0058 Score=45.06 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCC------CCcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 3 KIAPICLTKYDG------DIPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 3 ~~a~~i~~~~~g------~~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
+.|..|.+.|+. ..-.+.++|.++||||+|||.-|....
T Consensus 84 k~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 84 KLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 457778887775 235688999999999999999998765
No 28
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=95.57 E-value=0.0094 Score=44.15 Aligned_cols=28 Identities=39% Similarity=0.464 Sum_probs=23.9
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHhcCCC
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVGWNNV 45 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~~~~~ 45 (143)
+..++|.+|||||+|||.-++.+.+.++
T Consensus 23 ~LI~~l~~LPGIG~KsA~RlA~hLL~~~ 50 (212)
T 3vdp_A 23 KLIEELSKLPGIGPKTAQRLAFFIINMP 50 (212)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 3457888999999999999999988764
No 29
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=95.42 E-value=0.01 Score=36.41 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHH
Q 032317 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 3 ~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~ 40 (143)
+.|+.|++.+ --.+.++|.++||||+++++.|.-|
T Consensus 38 ~~A~~Il~~r---~~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 38 VLARRIVEGR---PYARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp HHHHHHHHTC---CCSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred HHHHHHHHHc---ccCCHHHHHhCCCCCHHHHHHHHHh
Confidence 4678888866 2378899999999999999988543
No 30
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=95.32 E-value=0.0064 Score=44.74 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=30.9
Q ss_pred CcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhccc
Q 032317 16 IPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWV 64 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~ 64 (143)
+-.+.++|..|||||+++|.+|+.+=-.. .| +.+.-+..|+.++
T Consensus 127 ITA~~~eL~~LpGIG~k~A~~IIeyRe~G--~F---~s~eDL~~RV~GI 170 (205)
T 2i5h_A 127 ITTRMHQLELLPGVGKKMMWAIIEERKKR--PF---ESFEDIAQRVKGI 170 (205)
T ss_dssp BCSSSBGGGGSTTCCHHHHHHHHHHHHHS--CC---CSHHHHHHHSTTC
T ss_pred ccCCHHHHhcCCCcCHHHHHHHHHHHhcC--CC---CCHHHHHHhcCCC
Confidence 34577899999999999999999985321 23 3344555666554
No 31
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=95.26 E-value=0.013 Score=43.73 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=23.5
Q ss_pred cHHHHhcCCCCcHHHHHHHHHHhcCCC
Q 032317 19 SLDELLLLPGIGPKMAHLVMNVGWNNV 45 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il~~~~~~~ 45 (143)
..++|.+|||||+|||.-++.+.+.++
T Consensus 10 LI~~l~~LPGIG~KSA~RlA~hLL~~~ 36 (228)
T 1vdd_A 10 LIRELSRLPGIGPKSAQRLAFHLFEQP 36 (228)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHSSSC
T ss_pred HHHHHhHCCCCCHHHHHHHHHHHHcCC
Confidence 457899999999999999998888764
No 32
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=95.25 E-value=0.02 Score=37.06 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=19.1
Q ss_pred cHHHHhcCCCCcHHHHHHHHHHh
Q 032317 19 SLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
+.++|.++||||+++|..|+.+-
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHH
Confidence 46788889999999999888874
No 33
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=95.12 E-value=0.0099 Score=40.99 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=20.4
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHH
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~ 40 (143)
.+.++|.+||||||+.|..|...
T Consensus 60 A~~~eL~~LpGiGp~~A~~II~~ 82 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIVKN 82 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHHT
T ss_pred cCHHHHHHCCCCCHHHHHHHHHc
Confidence 45689999999999999999954
No 34
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=94.92 E-value=0.0099 Score=38.83 Aligned_cols=24 Identities=17% Similarity=0.472 Sum_probs=21.2
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.+.++|.+|||||+++|..|...+
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~~G 46 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVKNA 46 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHHHC
T ss_pred CCHHHHhHCCCCCHHHHHHHHHcC
Confidence 467899999999999999999943
No 35
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.52 E-value=0.027 Score=33.62 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.7
Q ss_pred HHHHhcCCCCcHHHHHHHHHHh
Q 032317 20 LDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 20 ~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
...|.++||||++++..+|..-
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~F 24 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHV 24 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHc
Confidence 3678999999999999998753
No 36
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=94.28 E-value=0.029 Score=36.25 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=16.4
Q ss_pred HHHhcCCCCcHHHHHHHHHHh
Q 032317 21 DELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~~ 41 (143)
++|.++||||++++..|...+
T Consensus 70 edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 70 EDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp GGGGGSTTCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHCc
Confidence 568888888888888876654
No 37
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=93.60 E-value=0.051 Score=34.43 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.4
Q ss_pred cHHHHhcCCCCcHHHHHHHHHHh
Q 032317 19 SLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
....|.++||||++.+..+|..-
T Consensus 16 ~~s~L~~IpGIG~kr~~~LL~~F 38 (84)
T 1z00_B 16 PQDFLLKMPGVNAKNCRSLMHHV 38 (84)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHc
Confidence 34778999999999999998753
No 38
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=93.04 E-value=0.15 Score=32.41 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.8
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHH
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~ 40 (143)
.+.+++..|+|||+++|.-|--+
T Consensus 55 ~s~~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 55 RSGKEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp CSHHHHHTCTTTCHHHHHHHHHH
T ss_pred CCHHHHHHhhcccHHHHHHHHHH
Confidence 56799999999999999987654
No 39
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=93.00 E-value=0.063 Score=39.08 Aligned_cols=20 Identities=35% Similarity=0.693 Sum_probs=18.2
Q ss_pred HHHhcCCCCcHHHHHHHHHH
Q 032317 21 DELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~ 40 (143)
..|.++|||||++|-+|+..
T Consensus 72 ~~L~~v~GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 72 ELLLSVSGVGPKVALALLSA 91 (191)
T ss_dssp HHHHSSSCCCHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHHh
Confidence 56889999999999999986
No 40
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=92.76 E-value=0.071 Score=39.47 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=25.3
Q ss_pred HHHhcCCCCcHHHHHHHHHHhcCCCccc---cccchHHHHH
Q 032317 21 DELLLLPGIGPKMAHLVMNVGWNNVQGI---CVDTHVHRIC 58 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~~~~~~~~~---pvD~~v~Rv~ 58 (143)
..|.+++||||++|-.|+..- +. +.+ +++.++.++.
T Consensus 88 ~~L~sv~GIGpk~A~~Ils~~-~~-~~l~~aI~~~d~~~L~ 126 (212)
T 2ztd_A 88 LTLLSVSGVGPRLAMAALAVH-DA-PALRQVLADGNVAALT 126 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHS-CH-HHHHHHHHTTCHHHHH
T ss_pred HHhcCcCCcCHHHHHHHHHhC-CH-HHHHHHHHhCCHHHHh
Confidence 558899999999999999853 32 233 4566665543
No 41
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=92.51 E-value=0.17 Score=39.83 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=24.7
Q ss_pred HHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhc
Q 032317 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 9 ~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
++.+.-++ .+.++|.+|||||+++|..|.-+.-
T Consensus 46 l~~l~~~i-~~~~~l~~lpGIG~~~A~kI~E~l~ 78 (335)
T 2bcq_A 46 LKSFHKPV-TSYQEACSIPGIGKRMAEKIIEILE 78 (335)
T ss_dssp HHSCCSCC-CCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCccc-cCHHHHhcCCCccHHHHHHHHHHHH
Confidence 34444444 4567799999999999999988853
No 42
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=92.47 E-value=0.19 Score=39.45 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=25.2
Q ss_pred HHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhc
Q 032317 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 9 ~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
++.+..++ .+.++|.+|||||++||..|.-+.-
T Consensus 46 l~~l~~~i-~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 46 IAKYPHKI-KSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHCSSCC-CCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCccc-cCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34444444 4567899999999999999998853
No 43
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=92.36 E-value=0.12 Score=33.64 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 3 ~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
..|+.|++ + |.+ .++++|++++|||+++.+-+.-+.
T Consensus 37 ~~A~~IV~-~-GpF-~s~edL~~V~Gig~~~~e~l~~~l 72 (97)
T 3arc_U 37 TLAKLIVK-N-APY-ESVEDVLNIPGLTERQKQILRENL 72 (97)
T ss_dssp HHHHHHHH-H-CCC-SSGGGGGGCTTCCHHHHHHHHHTG
T ss_pred HHHHHHHH-c-CCC-CCHHHHHhccCCCHHHHHHHHHHh
Confidence 46888888 3 433 789999999999999999887654
No 44
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=92.23 E-value=0.13 Score=41.26 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCC---CCcCcHHHHhcCCCCcHHHHHHHHH
Q 032317 3 KIAPICLTKYDG---DIPSSLDELLLLPGIGPKMAHLVMN 39 (143)
Q Consensus 3 ~~a~~i~~~~~g---~~p~~~~~L~~lpGIG~ktA~~Il~ 39 (143)
..|+.|+++||. -+-.+.++|.+..|||+++|..|--
T Consensus 326 ~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 326 SIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp HHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 468889999976 3457889999999999999998853
No 45
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=91.75 E-value=0.099 Score=38.36 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=18.1
Q ss_pred HHHhcCCCCcHHHHHHHHHH
Q 032317 21 DELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~ 40 (143)
..|.+++||||++|-+||..
T Consensus 73 ~~L~~V~GIGpk~A~~iL~~ 92 (203)
T 1cuk_A 73 KELIKTNGVGPKLALAILSG 92 (203)
T ss_dssp HHHHHSSSCCHHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHhh
Confidence 46889999999999999985
No 46
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=91.64 E-value=0.14 Score=32.19 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=18.6
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q 032317 20 LDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 20 ~~~L~~lpGIG~ktA~~Il~~ 40 (143)
..+|..+||||+++|..++..
T Consensus 18 ~~~L~~IpgIG~~~A~~Ll~~ 38 (89)
T 1z00_A 18 TECLTTVKSVNKTDSQTLLTT 38 (89)
T ss_dssp HHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHH
Confidence 467889999999999999875
No 47
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=91.55 E-value=0.22 Score=39.57 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=25.1
Q ss_pred HHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhc
Q 032317 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 9 ~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
++.+..++ .+.++|.+|||||+++|+.|.-+.-
T Consensus 50 l~~l~~~i-~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 50 LKSLPCPV-ASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp HHHCSSCC-CSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred HHhCCccc-CCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44555545 3456799999999999999998854
No 48
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=91.53 E-value=0.13 Score=43.56 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCC----cCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHh
Q 032317 3 KIAPICLTKYDGDI----PSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRL 61 (143)
Q Consensus 3 ~~a~~i~~~~~g~~----p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl 61 (143)
..|+.|.+.|+. + -.+.++|.+++|||+.+|..|..|-- |-+.+.++.+|
T Consensus 523 ~~a~~La~~f~s-l~~l~~a~~e~l~~i~giG~~~A~si~~ff~--------~~~n~~~i~~L 576 (586)
T 4glx_A 523 ATAAGLAAYFGT-LEALEAASIEELQKVPDVGIVVASHVHNFFA--------EESNRNVISEL 576 (586)
T ss_dssp HHHHHHHHHHCS-HHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH--------SHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHccCHHHHhcCCCccHHHHHHHHHHHc--------CHHHHHHHHHH
Confidence 467888888863 3 35679999999999999999998852 23455566665
No 49
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=91.32 E-value=0.17 Score=43.37 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCC---CCcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 3 KIAPICLTKYDG---DIPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 3 ~~a~~i~~~~~g---~~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
..|+.|.+.|+. -.-.+.++|.+++|||+++|+.|..|-
T Consensus 518 ~~Ak~La~~Fgsl~~l~~As~eeL~~I~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 518 VLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETL 559 (667)
T ss_dssp HHHHHHHHTTSBHHHHTTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhCCHHHHHhccCcCHHHHHHHHHHH
Confidence 367888888865 235678999999999999999998885
No 50
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=90.73 E-value=0.083 Score=32.48 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=18.7
Q ss_pred HHHhcCCCCcHHHHHHHHHHhcC
Q 032317 21 DELLLLPGIGPKMAHLVMNVGWN 43 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~~~~ 43 (143)
.+|..+||||+++|..++.. |+
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~-fg 45 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKY-MG 45 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHH-HS
T ss_pred HHHhcCCCCCHHHHHHHHHH-cC
Confidence 56889999999999999876 44
No 51
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=90.69 E-value=0.2 Score=31.69 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=18.1
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q 032317 20 LDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 20 ~~~L~~lpGIG~ktA~~Il~~ 40 (143)
..+|..+||||+++|..++..
T Consensus 31 ~~~L~~IpgIG~~~A~~Ll~~ 51 (91)
T 2a1j_B 31 TECLTTVKSVNKTDSQTLLTT 51 (91)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHH
Confidence 366889999999999999875
No 52
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=90.42 E-value=0.29 Score=33.62 Aligned_cols=36 Identities=14% Similarity=0.358 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 3 ~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
..|+.|+++ |-+ .+.|+|+.++|||+++-+.+--+-
T Consensus 74 ~~A~~II~~--GpF-~svedL~~V~GIg~k~~e~l~~~~ 109 (134)
T 1s5l_U 74 TLAKLIVKN--APY-ESVEDVLNIPGLTERQKQILRENL 109 (134)
T ss_dssp HHHHHHHHT--CCC-SSGGGGGGCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCC-CCHHHHHhCCCCCHHHHHHHHHhh
Confidence 457778853 433 788999999999999988876654
No 53
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=90.30 E-value=0.24 Score=29.69 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=18.6
Q ss_pred HHHhcCCCCcHHHHHHHHHHhcC
Q 032317 21 DELLLLPGIGPKMAHLVMNVGWN 43 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~~~~ 43 (143)
.+|..+||||+++|..++.. |+
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~-fg 35 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKH-FG 35 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HC
T ss_pred HHHcCCCCCCHHHHHHHHHH-cC
Confidence 56889999999999999884 44
No 54
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=89.91 E-value=0.34 Score=38.76 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=24.9
Q ss_pred HHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhc
Q 032317 9 LTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 9 ~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
++.+..++ .+.++|.+|||||++||+.|.-+.-
T Consensus 69 l~~l~~~i-~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 69 LKSLPFPI-TSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp HHTCSSCC-CSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhCCccc-cCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44555544 3456799999999999999988864
No 55
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=88.94 E-value=0.19 Score=42.30 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.2
Q ss_pred CcCcHHHHhcCCCCcHHHHHHHHHHhc
Q 032317 16 IPSSLDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
.+....+|+++|||||+||..|+.-++
T Consensus 92 ~~~~~~~L~~v~GVGpk~A~~i~~~G~ 118 (578)
T 2w9m_A 92 LPPGLLDLLGVRGLGPKKIRSLWLAGI 118 (578)
T ss_dssp SCHHHHHHTTSTTCCHHHHHHHHHTTC
T ss_pred hHHHHHHHhCCCCcCHHHHHHHHHcCC
Confidence 467788999999999999999998644
No 56
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=88.91 E-value=0.33 Score=41.72 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCC---CCcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 3 KIAPICLTKYDG---DIPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 3 ~~a~~i~~~~~g---~~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
..|+.|.+.|+. -.-.+.++|.++||||+++|..|..|-
T Consensus 523 ~~Ak~La~~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 523 ATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp HHHHHHHHHHCSHHHHHTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhCCHHHHhhcCCCCHHHHHHHHHHH
Confidence 367888888865 123577999999999999999998875
No 57
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=88.64 E-value=0.16 Score=39.98 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=21.2
Q ss_pred cCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 17 PSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 17 p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
|..+.+|+++||||++||..+-.-+
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~G 118 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDEG 118 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHcC
Confidence 6778999999999999999885443
No 58
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=88.24 E-value=0.092 Score=39.60 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=0.0
Q ss_pred cHHHHhcCCCCcHHHHHHHHHHhcCCCccc
Q 032317 19 SLDELLLLPGIGPKMAHLVMNVGWNNVQGI 48 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~ 48 (143)
+...|.++||||+++|..++..+|+..+.+
T Consensus 13 ~~~~L~~IpGIGpk~a~~Ll~~gf~sve~L 42 (241)
T 1vq8_Y 13 EYTELTDISGVGPSKAESLREAGFESVEDV 42 (241)
T ss_dssp ------------------------------
T ss_pred chhHHhcCCCCCHHHHHHHHHcCCCCHHHH
Confidence 346788999999999999998766544333
No 59
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=87.58 E-value=0.2 Score=39.82 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=20.2
Q ss_pred CcCcHHHHhcCCCCcHHHHHHHHHH
Q 032317 16 IPSSLDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~~Il~~ 40 (143)
+|..+.+|+++||||++||..+-.-
T Consensus 97 ~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 97 RYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred chHHHHHHhCCCCCCHHHHHHHHHc
Confidence 4556678999999999999988443
No 60
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=87.09 E-value=0.33 Score=38.11 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.0
Q ss_pred HHHhcCCCCcHHHHHHHHHH
Q 032317 21 DELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~ 40 (143)
+.|.++||||++||..+-.-
T Consensus 96 ~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 96 ELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHT
T ss_pred HHHhcCCCcCHHHHHHHHHc
Confidence 44579999999999988543
No 61
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=86.72 E-value=0.3 Score=40.96 Aligned_cols=25 Identities=36% Similarity=0.749 Sum_probs=22.1
Q ss_pred CcCcHHHHhcCCCCcHHHHHHHHHH
Q 032317 16 IPSSLDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~~Il~~ 40 (143)
.|.....|++++||||+||..|+..
T Consensus 88 ~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 88 VPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp SCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred hHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 4667889999999999999999885
No 62
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=86.07 E-value=0.27 Score=39.40 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=20.5
Q ss_pred CcCcHHHHhcCCCCcHHHHHHHHHH
Q 032317 16 IPSSLDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~~Il~~ 40 (143)
+|..+.+|+++||||++||..+-.-
T Consensus 116 ~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 116 RYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred chhHHHHHHccCCCCHHHHHHHHHc
Confidence 4566778999999999999988544
No 63
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=83.42 E-value=0.22 Score=42.32 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHcCC---CCcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 4 IAPICLTKYDG---DIPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 4 ~a~~i~~~~~g---~~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.|+.|.+.|+. -.-.+.++|.++||||+++|..|..|-
T Consensus 541 ~ak~La~~Fgsle~L~~As~eeL~~I~GIG~~~A~sI~~ff 581 (615)
T 3sgi_A 541 AARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 581 (615)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 46667777753 123466899999999999999998875
No 64
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=82.15 E-value=0.43 Score=30.65 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=31.5
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcc
Q 032317 20 LDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGW 63 (143)
Q Consensus 20 ~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~ 63 (143)
+.+|..||+||++++......+....+.+ -+.....+..|+--
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L-~~~Ga~~ay~rL~~ 45 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVEL-KDVGSKEAFLRIWE 45 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHH-HHHHHHHHHHHHHT
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHH-HhCCHHHHHHHHHH
Confidence 46789999999999999998888764333 55555566666543
No 65
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=81.26 E-value=1.1 Score=29.91 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=23.7
Q ss_pred CCCCcCc---HHHHhcCCCCcHHHHHHHHHHhc
Q 032317 13 DGDIPSS---LDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 13 ~g~~p~~---~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
|-++|.+ .-.|..+.|||+.+|..|+.-+-
T Consensus 5 g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 5 GINIPDHKHAVIALTSIYGVGKTRSKAILAAAG 37 (114)
T ss_dssp SSCCCCSSCHHHHGGGSTTCCHHHHHHHHHHTT
T ss_pred CccCCCCCEeHhhHhhhcCcCHHHHHHHHHHcC
Confidence 3456654 36788999999999999998873
No 66
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=79.30 E-value=1.2 Score=37.20 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=23.8
Q ss_pred HHHHHHHHHcCCCCcCcH------HHHhcCCCCcHHHHHHHH
Q 032317 3 KIAPICLTKYDGDIPSSL------DELLLLPGIGPKMAHLVM 38 (143)
Q Consensus 3 ~~a~~i~~~~~g~~p~~~------~~L~~lpGIG~ktA~~Il 38 (143)
+.|..|.+..|..-++++ +.|.++||||+|||.-|+
T Consensus 104 k~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~ 145 (575)
T 3b0x_A 104 KTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIR 145 (575)
T ss_dssp HHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHH
Confidence 345555555444444333 347889999999999984
No 67
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=79.00 E-value=6.8 Score=24.83 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=36.0
Q ss_pred cCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchHHHHHHHhcccCCCCCCCCCCCHHHHHHHHHHh
Q 032317 17 PSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLW 86 (143)
Q Consensus 17 p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v~Rv~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~ 86 (143)
|-.-+.+..+||||+..+.-...-+|++ ..-++..+... ..+.+..++++...
T Consensus 14 PmgeK~V~evpGIG~~~~~~L~~~Gf~k---------Ay~lLGqFL~l--------~kd~~~F~~WLk~~ 66 (89)
T 1ci4_A 14 PMGEKPVGSLAGIGEVLGKKLEERGFDK---------AYVVLGQFLVL--------KKDEDLFREWLKDT 66 (89)
T ss_dssp CCTTCCGGGSTTCCHHHHHHHHHTTCCS---------HHHHHHHHHHT--------TTCHHHHHHHHHHH
T ss_pred CCCCCCcccCCCcCHHHHHHHHHcCccH---------HHHHHHHHHHc--------CCCHHHHHHHHHHH
Confidence 3334668889999999999888866654 34456665554 24566777777664
No 68
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=77.17 E-value=1.6 Score=31.73 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.1
Q ss_pred HHhcCCCCcHHHHHHHHHH
Q 032317 22 ELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 22 ~L~~lpGIG~ktA~~Il~~ 40 (143)
.|..+||||+++|..++..
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~ 181 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILER 181 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH
Confidence 4778999999999999986
No 69
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=76.63 E-value=1.6 Score=32.35 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=18.9
Q ss_pred HHHhcCCCCcHHHHHHHHHHhcCC
Q 032317 21 DELLLLPGIGPKMAHLVMNVGWNN 44 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~~~~~ 44 (143)
..|..+||||+++|..++.. |+.
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~-FgS 190 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEH-FGS 190 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HCS
T ss_pred ccccCCCCcCHHHHHHHHHH-cCC
Confidence 46788999999999998885 453
No 70
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=76.52 E-value=1.7 Score=26.30 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=17.4
Q ss_pred CcCcHHHHhcCCCCcHHHHH
Q 032317 16 IPSSLDELLLLPGIGPKMAH 35 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~ 35 (143)
.|.+.++|.+++|||+.-.+
T Consensus 42 ~P~t~~eL~~i~Gvg~~k~~ 61 (77)
T 2rhf_A 42 QPRTLAELAEVPGLGEKRIE 61 (77)
T ss_dssp CCCSHHHHTTSTTTCHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHH
Confidence 69999999999999986554
No 71
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=76.44 E-value=1.6 Score=30.36 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCcCc---HHHHhcCCCCcHHHHHHHHHHhc
Q 032317 15 DIPSS---LDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 15 ~~p~~---~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
++|.+ .-.|..+.|||+.+|..|+.-+-
T Consensus 21 ~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~g 51 (146)
T 3u5c_S 21 NVDGNIKIVYALTTIKGVGRRYSNLVCKKAD 51 (146)
T ss_dssp CBCSSSCTTTTGGGSTTCCHHHHHHHHHHHT
T ss_pred cCCCCcchHhhHhhhcCCCHHHHHHHHHHcC
Confidence 45544 35688999999999999998874
No 72
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=75.11 E-value=2 Score=30.14 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.8
Q ss_pred HHHHhcCCCCcHHHHHHHHHHh
Q 032317 20 LDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 20 ~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.-.|..+.|||+.+|..|+.-+
T Consensus 29 ~~aLt~I~GIG~~~A~~I~~~~ 50 (155)
T 2xzm_M 29 PIALTGIRGIGRRFAYIICKVL 50 (155)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHT
T ss_pred EEeeecccccCHHHHHHHHHHc
Confidence 4678999999999999999887
No 73
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=74.68 E-value=0.97 Score=28.99 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.1
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhcCCC
Q 032317 20 LDELLLLPGIGPKMAHLVMNVGWNNV 45 (143)
Q Consensus 20 ~~~L~~lpGIG~ktA~~Il~~~~~~~ 45 (143)
+.+|..||+||+.++......+....
T Consensus 3 m~~L~dLPNig~~~e~~L~~~GI~t~ 28 (93)
T 3mab_A 3 LANLSELPNIGKVLEQDLIKAGIKTP 28 (93)
T ss_dssp CCCGGGSTTCCHHHHHHHHHTTCCSH
T ss_pred HHHHhhCCCCCHHHHHHHHHcCCCCH
Confidence 45789999999999999988887654
No 74
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.56 E-value=1.9 Score=30.03 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=22.7
Q ss_pred CCcCc---HHHHhcCCCCcHHHHHHHHHHhc
Q 032317 15 DIPSS---LDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 15 ~~p~~---~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
++|.+ .-.|..+.|||+.+|..|+.-+-
T Consensus 14 ~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~g 44 (148)
T 3j20_O 14 DLDGNKQLRWALTAIKGIGINFATMVCRVAG 44 (148)
T ss_dssp CEECSSCHHHHHHHSTTCCHHHHHHHHHHHT
T ss_pred cCCCCCEehhhhhhccCcCHHHHHHHHHHhC
Confidence 45543 36788999999999999998874
No 75
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=74.41 E-value=2.2 Score=29.82 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCCcCc---HHHHhcCCCCcHHHHHHHHHHhc
Q 032317 14 GDIPSS---LDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 14 g~~p~~---~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
-++|.+ .-.|..+.|||+.+|..|+.-+-
T Consensus 18 ~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~g 49 (152)
T 3iz6_M 18 TNVDGKQKIMFALTSIKGVGRRFSNIVCKKAD 49 (152)
T ss_dssp TCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred CcCCCCcEeHhhhhhccCcCHHHHHHHHHHcC
Confidence 356654 46789999999999999998874
No 76
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=74.36 E-value=2.1 Score=26.57 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=16.0
Q ss_pred CcCcHHHHhcCCCCcHHH
Q 032317 16 IPSSLDELLLLPGIGPKM 33 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~kt 33 (143)
.|.+.++|..++|||+.-
T Consensus 44 ~P~t~~eL~~i~Gvg~~k 61 (85)
T 2kv2_A 44 LSSDPEVLLQIDGVTEDK 61 (85)
T ss_dssp CCSCHHHHHTSSSCCHHH
T ss_pred CCCCHHHHhhCCCCCHHH
Confidence 699999999999999753
No 77
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=74.27 E-value=2.3 Score=25.92 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=19.7
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.+.++|++++|+|+++.+-|....
T Consensus 38 ~s~~dLlki~n~G~kSl~EI~~~L 61 (73)
T 1z3e_B 38 KTEEDMMKVRNLGRKSLEEVKAKL 61 (73)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHcCCCCHHHHHHHHHHH
Confidence 467999999999999988776543
No 78
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=73.49 E-value=2.2 Score=26.70 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=16.6
Q ss_pred CcCcHHHHhcCCCCcHHHH
Q 032317 16 IPSSLDELLLLPGIGPKMA 34 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA 34 (143)
.|.+.++|..++|||+.-.
T Consensus 50 ~P~t~~eL~~i~Gvg~~k~ 68 (89)
T 1wud_A 50 MPITASEMLSVNGVGMRKL 68 (89)
T ss_dssp CCCSHHHHHTSTTCCHHHH
T ss_pred CCCCHHHHhhCCCCCHHHH
Confidence 6999999999999998544
No 79
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=72.77 E-value=2.8 Score=35.15 Aligned_cols=34 Identities=29% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCCCcCcHH------HHhcCCCCcHHHHHHH
Q 032317 3 KIAPICLTKYDGDIPSSLD------ELLLLPGIGPKMAHLV 37 (143)
Q Consensus 3 ~~a~~i~~~~~g~~p~~~~------~L~~lpGIG~ktA~~I 37 (143)
+.|+.|.+. |-.-++++. .|.++||||+|||.-|
T Consensus 108 k~A~~i~~~-G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 108 KKIRSLWLA-GIDSLERLREAAESGELAGLKGFGAKSAATI 147 (578)
T ss_dssp HHHHHHHHT-TCCSHHHHHHHHHHTTTTTSTTCCHHHHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHhhCccccCCCCCHHHHHHH
Confidence 356666665 322233322 3566999999999998
No 80
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=71.36 E-value=1.8 Score=33.27 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.4
Q ss_pred cCCCCcHHHHHHHHHH
Q 032317 25 LLPGIGPKMAHLVMNV 40 (143)
Q Consensus 25 ~lpGIG~ktA~~Il~~ 40 (143)
.+||||+|||.-++.-
T Consensus 207 GVpGIG~KTA~kLL~~ 222 (290)
T 1exn_A 207 GVEGIGAKRGYNIIRE 222 (290)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCcCCHhHHHHHHHH
Confidence 4899999999887763
No 81
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=68.82 E-value=3.2 Score=26.83 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=18.0
Q ss_pred CcCcHHHHhcCCCCcHHHHHH
Q 032317 16 IPSSLDELLLLPGIGPKMAHL 36 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~~ 36 (143)
.|.+.++|..++|||+.-..-
T Consensus 52 ~P~t~~eL~~I~Gvg~~K~~~ 72 (103)
T 2e1f_A 52 RPTTVENVKRIDGVSEGKAAM 72 (103)
T ss_dssp CCCSHHHHTTSTTCCHHHHHH
T ss_pred CCCCHHHHhcCCCCCHHHHHH
Confidence 699999999999999865553
No 82
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=68.43 E-value=2.1 Score=28.29 Aligned_cols=17 Identities=12% Similarity=0.427 Sum_probs=15.3
Q ss_pred CcCcHHHHhcCCCCcHH
Q 032317 16 IPSSLDELLLLPGIGPK 32 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~k 32 (143)
.|.+.++|..++|||+.
T Consensus 59 ~P~t~~eL~~I~Gvg~~ 75 (113)
T 2dgz_A 59 RPTTVENVKRIDGVSEG 75 (113)
T ss_dssp CCCSHHHHHHSSSCCTT
T ss_pred CCCCHHHHHhCCCCCHH
Confidence 68999999999999963
No 83
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=67.89 E-value=1.8 Score=29.29 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=23.0
Q ss_pred CCCCcCc---HHHHhcCCCCcHHHHHHHHHHh
Q 032317 13 DGDIPSS---LDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 13 ~g~~p~~---~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
|-++|.+ .-.|..+.|||+.+|..|+.-+
T Consensus 6 g~~i~~~k~v~~aLt~I~GIG~~~A~~I~~~~ 37 (126)
T 2vqe_M 6 GVEIPRNKRVDVALTYIYGIGKARAKEALEKT 37 (126)
T ss_dssp TTCCCCSSBHHHHHTTSSSCCSHHHHHHTTTT
T ss_pred CccCCCCcEeeeehhccccccHHHHHHHHHHc
Confidence 3466754 3578999999999999998765
No 84
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=67.80 E-value=2.6 Score=33.07 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.2
Q ss_pred cCCCCcHHHHHHHHHH
Q 032317 25 LLPGIGPKMAHLVMNV 40 (143)
Q Consensus 25 ~lpGIG~ktA~~Il~~ 40 (143)
.+||||+|||--++.-
T Consensus 236 gipGiG~KtA~kll~~ 251 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQK 251 (341)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHH
Confidence 4899999999877753
No 85
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=66.99 E-value=3.9 Score=25.33 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=20.0
Q ss_pred cCcHHHHhcCCCCcHHHHHHHHHH
Q 032317 17 PSSLDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 17 p~~~~~L~~lpGIG~ktA~~Il~~ 40 (143)
-.+.++|++++|+|+++.+-|...
T Consensus 44 ~~se~dLlki~n~G~kSl~EI~~~ 67 (79)
T 3gfk_B 44 NKTEEDMMKVRNLGRKSLEEVKAK 67 (79)
T ss_dssp TCCHHHHTTSTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHcCCCCHhHHHHHHHH
Confidence 356799999999999999887643
No 86
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=66.80 E-value=3.7 Score=35.91 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.3
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.+.++|..+||||+..|..|+.+-
T Consensus 505 As~~~L~~v~GiG~~~A~~Iv~yR 528 (785)
T 3bzc_A 505 ASAALLARISGLNSTLAQNIVAHR 528 (785)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhhcCCCCHHHHHHHHHHH
Confidence 467889999999999999999883
No 87
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=66.42 E-value=3.8 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.0
Q ss_pred CcCcHHHHhcCCCCcHHHHH
Q 032317 16 IPSSLDELLLLPGIGPKMAH 35 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~ 35 (143)
.|.+.++|..++|||+.-..
T Consensus 59 ~P~t~~eL~~I~Gvg~~k~~ 78 (101)
T 2rrd_A 59 LSSDPEVLLQIDGVTEDKLE 78 (101)
T ss_dssp CCCCHHHHHTSTTCCHHHHH
T ss_pred CCCCHHHHhhCCCCCHHHHH
Confidence 69999999999999976443
No 88
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=66.00 E-value=4.4 Score=25.54 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.5
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.+.++|++++|+|+++.+-|....
T Consensus 41 ~se~dLlki~n~G~KSl~EI~~~L 64 (86)
T 3k4g_A 41 RTEVELLXTPNLGXXSLTEIXDVL 64 (86)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhhccccCcccHHHHHHHH
Confidence 467899999999999999887654
No 89
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=65.91 E-value=1.3 Score=33.05 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=0.0
Q ss_pred HHHhcCCCCcHHHHHHHHHHhcCC
Q 032317 21 DELLLLPGIGPKMAHLVMNVGWNN 44 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~~~~~ 44 (143)
..|..+||||+++|..++.. |+.
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~-FGS 195 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNY-FGS 195 (226)
T ss_dssp ------------------------
T ss_pred ccccccCCCCHHHHHHHHHH-hCC
Confidence 56788999999999999886 443
No 90
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=65.50 E-value=3.5 Score=27.28 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.6
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHhc
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~~ 42 (143)
.++++|..++|||+-+|+-|+..+-
T Consensus 55 a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 55 APKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp SBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred CCHHHHHHccCCCHHHHHHHHHHHH
Confidence 5689999999999999999999884
No 91
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=65.30 E-value=1.3 Score=33.22 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=0.0
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.+.++|.++||||++||.-|....
T Consensus 45 a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 45 ADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp ------------------------
T ss_pred CCHHHHHhccCCCHHHHHHHHHHH
Confidence 456788899999999999996654
No 92
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=59.94 E-value=4.4 Score=31.43 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.6
Q ss_pred cCCCCcHHHHHHHHHH
Q 032317 25 LLPGIGPKMAHLVMNV 40 (143)
Q Consensus 25 ~lpGIG~ktA~~Il~~ 40 (143)
.+||||+|||--++.-
T Consensus 239 Gv~GiG~KtA~kLl~~ 254 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKT 254 (336)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 5999999999887763
No 93
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=58.50 E-value=4.7 Score=31.87 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.0
Q ss_pred cCCCCcHHHHHHHHHH
Q 032317 25 LLPGIGPKMAHLVMNV 40 (143)
Q Consensus 25 ~lpGIG~ktA~~Il~~ 40 (143)
.+||||+|||--++.-
T Consensus 255 GVpGIG~KtA~kLl~~ 270 (363)
T 3ory_A 255 GFEGIGPKKALQLVKA 270 (363)
T ss_dssp CSTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 6889999999988874
No 94
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=58.36 E-value=4.7 Score=31.44 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.8
Q ss_pred cCCCCcHHHHHHHHHH
Q 032317 25 LLPGIGPKMAHLVMNV 40 (143)
Q Consensus 25 ~lpGIG~ktA~~Il~~ 40 (143)
.+||||+|||--++.-
T Consensus 238 Gv~GIG~KtA~kLi~~ 253 (346)
T 2izo_A 238 GIRGIGPERALKIIKK 253 (346)
T ss_dssp CSTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 6899999999888774
No 95
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=58.19 E-value=6 Score=35.64 Aligned_cols=37 Identities=8% Similarity=-0.155 Sum_probs=25.1
Q ss_pred HHHHHHHHc---CCCCcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 4 IAPICLTKY---DGDIPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 4 ~a~~i~~~~---~g~~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.|+.|++.. +| -..++++|++.+|||++|-.-...|.
T Consensus 729 kA~~Iv~~r~~~~G-~f~sr~~L~~v~~iG~k~fe~~agfl 768 (1030)
T 3psf_A 729 KAIDFLQSLQRLNE-PLLARQQLITHNILHKTIFMNSAGFL 768 (1030)
T ss_dssp HHHHHHHHHHHTCS-CCCCTTHHHHTTSSCHHHHHHHTTTE
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHhcCCccHHHHHhccCeE
Confidence 456666543 45 44778888888888888876665554
No 96
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=57.64 E-value=12 Score=32.62 Aligned_cols=59 Identities=19% Similarity=0.105 Sum_probs=40.3
Q ss_pred HHHHHHHH--cCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccc---------hHHHHHHHhcc
Q 032317 4 IAPICLTK--YDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDT---------HVHRICNRLGW 63 (143)
Q Consensus 4 ~a~~i~~~--~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~---------~v~Rv~~Rl~~ 63 (143)
.|+.|++. -+|. ..++++|.+++|||+++-.-+..|..-..-..|.|. -+.+++..+|.
T Consensus 520 ~A~~Iv~yR~~~G~-f~sr~~L~~V~giG~k~~ekl~~FL~i~G~~~pLD~t~VHPEsY~~a~kil~~~g~ 589 (785)
T 3bzc_A 520 LAQNIVAHRDANGA-FRTRDELKKVSRLGEKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTER 589 (785)
T ss_dssp HHHHHHHHHHHHCC-CSSGGGGGGSTTCCHHHHHHHGGGEECTTSSCGGGGSSCCGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHhcCCCCHHHHHHhhheEEECCcccccccCcCCHHHHHHHHHHHHHcCC
Confidence 46666653 1243 478999999999999999998888743322346664 24577777653
No 97
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=57.37 E-value=6.3 Score=32.45 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=17.1
Q ss_pred HHHHhcCCCCcHHHHHHHHHH
Q 032317 20 LDELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 20 ~~~L~~lpGIG~ktA~~Il~~ 40 (143)
...|.++|||||.+|..+|-.
T Consensus 467 eamLtAIaGIGp~tAeRLLEk 487 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKK 487 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHH
Confidence 366888999999999987753
No 98
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=57.26 E-value=6.4 Score=30.05 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.7
Q ss_pred HHHhcCCCCcHHHHHHHHHH
Q 032317 21 DELLLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 21 ~~L~~lpGIG~ktA~~Il~~ 40 (143)
.-|+++|||++..|.+|+.-
T Consensus 237 ~mL~~IpGVs~~~A~~I~~~ 256 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLEH 256 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH
Confidence 56889999999999999864
No 99
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=56.68 E-value=7.7 Score=29.83 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHH
Q 032317 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVM 38 (143)
Q Consensus 3 ~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il 38 (143)
++++.|.. |.++++ ..|.+|||||+.++..+-
T Consensus 143 ~L~q~i~q---~~w~~~-~pL~Qlp~i~~~~~~~l~ 174 (328)
T 3im1_A 143 DLAQMLIQ---GVWDVD-NPLRQIPHFNNKILEKCK 174 (328)
T ss_dssp HHHHHHHH---TSCTTS-CGGGGSTTCCHHHHHHHH
T ss_pred HHHHHHHh---hcCCCC-CceeCCCCCCHHHHHHHH
Confidence 45555554 445544 469999999999998754
No 100
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=56.56 E-value=8.1 Score=24.90 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.1
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.+.++|++++|+|+++.+-|.-..
T Consensus 53 ~se~dLlki~n~G~KSl~EI~~~L 76 (98)
T 1coo_A 53 RTEVELLKTPNLGKKSLTEIKDVL 76 (98)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhcCCCCHHHHHHHHHHH
Confidence 466999999999999998876554
No 101
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=56.36 E-value=5.5 Score=30.75 Aligned_cols=16 Identities=31% Similarity=0.247 Sum_probs=14.1
Q ss_pred cCCCCcHHHHHHHHHH
Q 032317 25 LLPGIGPKMAHLVMNV 40 (143)
Q Consensus 25 ~lpGIG~ktA~~Il~~ 40 (143)
.+||||+|||--++.-
T Consensus 229 GvpGiG~ktA~kli~~ 244 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS 244 (326)
T ss_dssp TTTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc
Confidence 6899999999888876
No 102
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=54.74 E-value=5.6 Score=31.25 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.3
Q ss_pred hcCCCCcHHHHHHHHHH
Q 032317 24 LLLPGIGPKMAHLVMNV 40 (143)
Q Consensus 24 ~~lpGIG~ktA~~Il~~ 40 (143)
-.+||||+|||--++.-
T Consensus 228 pgv~GiG~ktA~kli~~ 244 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRL 244 (352)
T ss_dssp CCCTTCCHHHHHHHHHH
T ss_pred CCCCCeeHHHHHHHHHH
Confidence 36999999999888764
No 103
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=54.67 E-value=6 Score=30.73 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.8
Q ss_pred cCCCCcHHHHHHHHHH
Q 032317 25 LLPGIGPKMAHLVMNV 40 (143)
Q Consensus 25 ~lpGIG~ktA~~Il~~ 40 (143)
.+||||+|||--++.-
T Consensus 241 gv~GiG~ktA~kli~~ 256 (340)
T 1b43_A 241 GIKGIGLKKALEIVRH 256 (340)
T ss_dssp CSTTCCHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHH
Confidence 6899999999888763
No 104
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=52.92 E-value=6.7 Score=31.03 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.9
Q ss_pred CCCCcHHHHHHHHHH
Q 032317 26 LPGIGPKMAHLVMNV 40 (143)
Q Consensus 26 lpGIG~ktA~~Il~~ 40 (143)
+||||++||--++.-
T Consensus 237 IpGIG~KtA~kLl~~ 251 (379)
T 1ul1_X 237 IRGIGPKRAVDLIQK 251 (379)
T ss_dssp CTTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 899999999887763
No 105
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=51.69 E-value=4.5 Score=33.81 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCCc----CcHHHHhcCCCCcHHHHHHHHH
Q 032317 4 IAPICLTKYDGDIP----SSLDELLLLPGIGPKMAHLVMN 39 (143)
Q Consensus 4 ~a~~i~~~~~g~~p----~~~~~L~~lpGIG~ktA~~Il~ 39 (143)
.|..|.+.||.+.- ++.=.|..++|||.+|||.|..
T Consensus 23 ~a~~i~~~yg~~~~~~i~~nPy~l~~i~gigf~~aD~ia~ 62 (574)
T 3e1s_A 23 QAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLWQ 62 (574)
T ss_dssp ---------------------CGGGTSSSCCHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCcCCCCHHHHHHHHH
Confidence 46667778876432 2222357899999999999875
No 106
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=48.11 E-value=19 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.0
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.+.++|..++||+...|+.|..-+
T Consensus 37 ~~~~eL~~i~gise~kA~~ii~aA 60 (70)
T 1wcn_A 37 QGIDDLADIEGLTDEKAGALIMAA 60 (70)
T ss_dssp SCHHHHHTSSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHccCCCHHHHHHHHHHH
Confidence 367889999999999998888766
No 107
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=47.81 E-value=20 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.1
Q ss_pred CcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 18 SSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 18 ~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.++++|..++||..-+|+-|..-+
T Consensus 36 ~~~~eL~~I~G~dE~~a~~l~~~A 59 (70)
T 1u9l_A 36 VPMKELLEIEGLDEPTVEALRERA 59 (70)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHhhccCCCHHHHHHHHHHH
Confidence 367999999999999999988766
No 108
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=46.99 E-value=11 Score=29.21 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHH
Q 032317 3 KIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMN 39 (143)
Q Consensus 3 ~~a~~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~ 39 (143)
++++.|.. |.++++ ..|.+|||||+.++..+-.
T Consensus 147 ~L~q~i~q---~~w~~~-~pL~Qlp~i~~~~~~~l~~ 179 (339)
T 2q0z_X 147 ELAQMVTQ---AMWSKD-SYLKQLPHFTSEHIKRCTD 179 (339)
T ss_dssp HHHHHHHH---TCCTTS-CGGGGSTTCCHHHHHHHHH
T ss_pred HHHHHHHH---hcCCCC-CceecCCCCCHHHHHHHHh
Confidence 45555554 334443 4799999999999887643
No 109
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=45.86 E-value=12 Score=34.36 Aligned_cols=37 Identities=8% Similarity=-0.155 Sum_probs=24.3
Q ss_pred HHHHHHHHc---CCCCcCcHHHHhcCCCCcHHHHHHHHHHh
Q 032317 4 IAPICLTKY---DGDIPSSLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 4 ~a~~i~~~~---~g~~p~~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
.|+.|++.. +| -..++++|+..+|||++|-.-...|.
T Consensus 726 kA~~Iv~~r~~~~G-~f~sr~~L~~v~~iG~k~fe~~agfl 765 (1219)
T 3psi_A 726 KAIDFLQSLQRLNE-PLLARQQLITHNILHKTIFMNSAGFL 765 (1219)
T ss_dssp HHHHHHHHHHHHCS-CCCCTTHHHHTTCSCHHHHHHHGGGE
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHhhCCCccHHHHHhccccE
Confidence 456665533 45 34778888888888888766655554
No 110
>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}
Probab=45.81 E-value=5.9 Score=28.47 Aligned_cols=15 Identities=33% Similarity=0.866 Sum_probs=13.5
Q ss_pred CCCCCCCCcCccCcc
Q 032317 111 RPRCGMCSVSELCPS 125 (143)
Q Consensus 111 ~P~C~~CpL~~~C~~ 125 (143)
++.|..|++.+.|+.
T Consensus 189 ~~~C~~Cs~~~~C~~ 203 (206)
T 4ic1_A 189 NWECKYCIFSVICPA 203 (206)
T ss_dssp TTSGGGCTTGGGCTT
T ss_pred CCCCCCCCCCCcCCC
Confidence 578999999999985
No 111
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=38.48 E-value=23 Score=27.29 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=16.8
Q ss_pred HhcCCCCcHHHHHHHHHHhcC
Q 032317 23 LLLLPGIGPKMAHLVMNVGWN 43 (143)
Q Consensus 23 L~~lpGIG~ktA~~Il~~~~~ 43 (143)
+..|||||++|+...-.++..
T Consensus 180 v~~l~GiG~~~~~~L~~~Gi~ 200 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKLGIN 200 (352)
T ss_dssp GGGSTTCCHHHHHHHHTTTCC
T ss_pred CCcccccCHHHHHHHHHcCCc
Confidence 556999999999987766654
No 112
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=38.31 E-value=2.7 Score=29.14 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCcCcH---HHHhcCCCCcHHHHHHHHHHh
Q 032317 14 GDIPSSL---DELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 14 g~~p~~~---~~L~~lpGIG~ktA~~Il~~~ 41 (143)
-++|.+. -.|..+.|||+.+|..|+.-+
T Consensus 52 vdlp~~K~v~~aLt~IyGIG~~~A~~I~~~~ 82 (145)
T 3bbn_M 52 VEIPNHKRVEYSLQYIHGIGRSRSRQILLDL 82 (145)
T ss_dssp SCCCCSSBTTTGGGGSTTCCSSTTTGGGTTT
T ss_pred cccCCCCEEEEeeeeecCccHHHHHHHHHHc
Confidence 3667543 578899999999999998654
No 113
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=37.03 E-value=28 Score=29.23 Aligned_cols=29 Identities=38% Similarity=0.557 Sum_probs=23.5
Q ss_pred CcCcHHHHhcCCCCcHHHHHHHHHHhcCC
Q 032317 16 IPSSLDELLLLPGIGPKMAHLVMNVGWNN 44 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~~Il~~~~~~ 44 (143)
++.+.-.|.+|||||+..|..+-..++..
T Consensus 652 v~~e~~~L~qlp~i~~~rar~L~~~g~~s 680 (715)
T 2va8_A 652 IKEELLELVQISGVGRKRARLLYNNGIKE 680 (715)
T ss_dssp CCGGGHHHHTSTTCCHHHHHHHHHTTCCS
T ss_pred CChhhcchhhCCCCCHHHHHHHHHcCCCC
Confidence 56677889999999999999887666543
No 114
>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1
Probab=35.20 E-value=20 Score=21.09 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHcCCCCcCcHH
Q 032317 1 MKKIAPICLTKYDGDIPSSLD 21 (143)
Q Consensus 1 l~~~a~~i~~~~~g~~p~~~~ 21 (143)
+.++|+.|+|+|-..+-.|.+
T Consensus 9 iK~~a~~liekY~~~~t~DF~ 29 (62)
T 1rq6_A 9 VKRIAKEMIETHPGKFTDDFD 29 (62)
T ss_dssp HHHHHHHHHTTSCCCCCCCHH
T ss_pred HHHHHHHHHHHhHhHhcCCHH
Confidence 357899999998887766653
No 115
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=34.85 E-value=22 Score=27.51 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.4
Q ss_pred hcCCCCcHHHHHHHHHHhcC
Q 032317 24 LLLPGIGPKMAHLVMNVGWN 43 (143)
Q Consensus 24 ~~lpGIG~ktA~~Il~~~~~ 43 (143)
..+||||++|+.-.-.++..
T Consensus 181 ~~l~GiG~~~~~~L~~~GI~ 200 (356)
T 4dez_A 181 DALWGVGPKTTKKLAAMGIT 200 (356)
T ss_dssp GGSTTCCHHHHHHHHHTTCC
T ss_pred HHHcCCchhHHHHHHHcCCC
Confidence 45999999999988777654
No 116
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=34.75 E-value=3 Score=32.01 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=17.1
Q ss_pred HHHHhcCCCCcHHHHHHHHH
Q 032317 20 LDELLLLPGIGPKMAHLVMN 39 (143)
Q Consensus 20 ~~~L~~lpGIG~ktA~~Il~ 39 (143)
.+.|+++||||+++|.+|+.
T Consensus 232 ~~~L~~I~GVs~~~A~~I~~ 251 (307)
T 2zix_A 232 ARQLMQVRGVSGEKAAALVD 251 (307)
T ss_dssp HHTTTCSTTCCSTTTTTSSS
T ss_pred HHHHHhccCCCHHHHHHHHH
Confidence 36799999999999998864
No 117
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=33.86 E-value=22 Score=25.72 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=15.6
Q ss_pred HhcCCCCcHHHHHHHHHHhc
Q 032317 23 LLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 23 L~~lpGIG~ktA~~Il~~~~ 42 (143)
+..|||||++|+.....++.
T Consensus 186 v~~l~giG~~~~~~L~~~Gi 205 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELGI 205 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTTC
T ss_pred cccccCCCHHHHHHHHHcCC
Confidence 45699999999988766554
No 118
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=33.65 E-value=68 Score=21.25 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=44.7
Q ss_pred HHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchH---HHHHHHhcccCCCCCCCCCCCHHHHHHHH
Q 032317 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHV---HRICNRLGWVSQPGRKQKTSSPEQTREVL 83 (143)
Q Consensus 7 ~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v---~Rv~~Rl~~~~~~~~~~~~~~~~~~~~~l 83 (143)
+..+-|.+.+.+....-..++++-+.+-..++.|.|... ...-+.++ ..++.+++... -.+..++.+
T Consensus 59 ~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~-~~~~~~~~~~ll~~A~~~~~~~---------l~~~c~~~l 128 (172)
T 3htm_A 59 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK-APNLDKMADDLLAAADKYALER---------LKVMCEDAL 128 (172)
T ss_dssp HHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSC-CTTGGGTHHHHHHHHHHTTCHH---------HHHHHHHHH
T ss_pred HHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCC-CCCcHHHHHHHHHHHHHhCcHH---------HHHHHHHHH
Confidence 344445555655556677899999999999999999753 22233333 44444544321 123445555
Q ss_pred HHhCCCCCh
Q 032317 84 QLWLPKEEW 92 (143)
Q Consensus 84 ~~~~p~~~~ 92 (143)
.+.+..++.
T Consensus 129 ~~~l~~~n~ 137 (172)
T 3htm_A 129 CSNLSVENA 137 (172)
T ss_dssp HHTCCTTTH
T ss_pred HHhCCHHHH
Confidence 555554443
No 119
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=33.49 E-value=23 Score=30.32 Aligned_cols=36 Identities=25% Similarity=0.156 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCCCcC-----cHHHHhcCCCCcHHHHHHHH
Q 032317 3 KIAPICLTKYDGDIPS-----SLDELLLLPGIGPKMAHLVM 38 (143)
Q Consensus 3 ~~a~~i~~~~~g~~p~-----~~~~L~~lpGIG~ktA~~Il 38 (143)
+.++.|++..+-.-+. +.+.|..++|+|.|+|.-|+
T Consensus 452 k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl 492 (667)
T 1dgs_A 452 KLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLL 492 (667)
T ss_dssp HHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHH
Confidence 4566777765432222 24788899999999998877
No 120
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=33.27 E-value=22 Score=27.43 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=16.4
Q ss_pred HhcCCCCcHHHHHHHHHHhcC
Q 032317 23 LLLLPGIGPKMAHLVMNVGWN 43 (143)
Q Consensus 23 L~~lpGIG~ktA~~Il~~~~~ 43 (143)
+..|||||++|+...-.++..
T Consensus 181 v~~l~GiG~~~~~~L~~~Gi~ 201 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELGIQ 201 (354)
T ss_dssp STTSTTCCHHHHHHHTTTTCC
T ss_pred cccccCcCHHHHHHHHHcCCc
Confidence 456999999999987766654
No 121
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=33.26 E-value=14 Score=33.26 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=19.4
Q ss_pred cHHHHhcCCCCcHHHHHHHHHHh
Q 032317 19 SLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
+...|..++||||..|.+|+.+-
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r 737 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSL 737 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 35667789999999999999875
No 122
>1qz7_B Axin; beta-catenin, protein-protein complex, cell adhesion; 2.20A {Xenopus laevis}
Probab=32.42 E-value=7 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=17.0
Q ss_pred HhcCCCccccccchHHHHHHHhcc
Q 032317 40 VGWNNVQGICVDTHVHRICNRLGW 63 (143)
Q Consensus 40 ~~~~~~~~~pvD~~v~Rv~~Rl~~ 63 (143)
-+..+++--++|-||.||+.-=|-
T Consensus 29 d~~EedPesILDeHvsRV~ktPGc 52 (70)
T 1qz7_B 29 DAHEENPESILDEHVQRVMKTPGC 52 (70)
T ss_pred cccccChHHHHHHHHHHHHhCcCC
Confidence 344444445699999999987764
No 123
>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.89 E-value=22 Score=21.19 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCCCcCcH
Q 032317 2 KKIAPICLTKYDGDIPSSL 20 (143)
Q Consensus 2 ~~~a~~i~~~~~g~~p~~~ 20 (143)
.++|+.|+|+|-..+-+|.
T Consensus 10 Kr~a~~liekY~~~~t~DF 28 (67)
T 3j20_S 10 KRVARELVNKYPNEFTTDF 28 (67)
T ss_dssp HHHHHHHHHHSGGGCCSCH
T ss_pred HHHHHHHHHHhhhhhcccH
Confidence 5788889998877666655
No 124
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=29.98 E-value=33 Score=24.99 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCCc-CcHHHHhcCCCCcHHHHHHHHHHhcCCCccccccchH
Q 032317 4 IAPICLTKYDGDIP-SSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHV 54 (143)
Q Consensus 4 ~a~~i~~~~~g~~p-~~~~~L~~lpGIG~ktA~~Il~~~~~~~~~~pvD~~v 54 (143)
+-+-|.++|||--| +...+-+++=|-|-|+|==|.++|.+.- .+|+|..|
T Consensus 118 ~eR~is~kfGG~~p~eiiA~tLR~fgqG~KV~vEi~lMAaDAG-lIp~geeV 168 (206)
T 1t57_A 118 VGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIAIMAADAG-LIPVDEEV 168 (206)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-SSCSSSCE
T ss_pred hhHHHHHhcCCCCHHHHHHHHHHHhCCCceEEEEEeeeeecCC-CCCCCCeE
Confidence 34667889999776 4577777899999999999999998763 56666543
No 125
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=29.81 E-value=42 Score=28.16 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=22.1
Q ss_pred CcCcHHHHhcCCCCcHHHHHHHHHHhcCC
Q 032317 16 IPSSLDELLLLPGIGPKMAHLVMNVGWNN 44 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~~Il~~~~~~ 44 (143)
++.+.-.|+++||||+.+|..+-.-++..
T Consensus 627 v~~~~~~L~qlp~v~~~~ar~l~~~g~~s 655 (702)
T 2p6r_A 627 VKEELLELVRIRHIGRVRARKLYNAGIRN 655 (702)
T ss_dssp CCGGGHHHHTSTTCCHHHHHHHHTTTCCS
T ss_pred CCcchHhhhcCCCCCHHHHHHHHHcCCCC
Confidence 45556789999999999998876555543
No 126
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=27.96 E-value=20 Score=32.96 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=19.4
Q ss_pred cHHHHhcCCCCcHHHHHHHHHHh
Q 032317 19 SLDELLLLPGIGPKMAHLVMNVG 41 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il~~~ 41 (143)
+...|..++|||+..|.+|+.+-
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r 734 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSL 734 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHH
Confidence 35667789999999999998775
No 127
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=27.41 E-value=34 Score=24.91 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=19.1
Q ss_pred HHHHHHHHHc-CCCCcCcHHHHhc-CCCCcHH
Q 032317 3 KIAPICLTKY-DGDIPSSLDELLL-LPGIGPK 32 (143)
Q Consensus 3 ~~a~~i~~~~-~g~~p~~~~~L~~-lpGIG~k 32 (143)
+.|+.|++.- .|. ..+.++|.. ++|||+.
T Consensus 143 k~A~~IIeyRe~G~-F~s~eDL~~RV~GIg~~ 173 (205)
T 2i5h_A 143 KMMWAIIEERKKRP-FESFEDIAQRVKGIQRP 173 (205)
T ss_dssp HHHHHHHHHHHHSC-CCSHHHHHHHSTTCCCH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHhcCCCCcc
Confidence 4577777632 243 378899976 9995544
No 128
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=26.93 E-value=33 Score=28.90 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=21.6
Q ss_pred CcCcHHHHhcCCCCcHHHHHHHHHHhcC
Q 032317 16 IPSSLDELLLLPGIGPKMAHLVMNVGWN 43 (143)
Q Consensus 16 ~p~~~~~L~~lpGIG~ktA~~Il~~~~~ 43 (143)
++.+.-.|++|||||..+|..+...++.
T Consensus 641 v~~e~~~L~qlp~v~~~rar~L~~~G~~ 668 (720)
T 2zj8_A 641 IREELIPLMQLPLVGRRRARALYNSGFR 668 (720)
T ss_dssp CCGGGGGGTTSTTCCHHHHHHHHTTTCC
T ss_pred CCccchhhhhCCCCCHHHHHHHHHcCCC
Confidence 3444568999999999999998765554
No 129
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=25.36 E-value=23 Score=26.38 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHHHhcCCCccccccc-hHHH---------HHHHhcccCC
Q 032317 27 PGIGPKMAHLVMNVGWNNVQGICVDT-HVHR---------ICNRLGWVSQ 66 (143)
Q Consensus 27 pGIG~ktA~~Il~~~~~~~~~~pvD~-~v~R---------v~~Rl~~~~~ 66 (143)
.|+|.-.|+++-...+..-+.++||. .+.- ++.|||.++.
T Consensus 18 ~g~~~t~~NalRRills~vp~~AI~~V~i~~Ntsvl~DE~v~Hr~~~Ip~ 67 (265)
T 2pa8_D 18 EGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPF 67 (265)
T ss_dssp ESSCHHHHHHHHHHHHHSCCEEEEEEEEEEEECSSSCHHHHHHHHTTSCB
T ss_pred eCCCHHHHHHHHHHHHHcCccceEEEEEEEeCCCccccHHHHHhhcCCcC
Confidence 39999999999988888777877765 6666 8999998874
No 130
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=25.14 E-value=37 Score=27.11 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=16.6
Q ss_pred HhcCCCCcHHHHHHHHHHhcC
Q 032317 23 LLLLPGIGPKMAHLVMNVGWN 43 (143)
Q Consensus 23 L~~lpGIG~ktA~~Il~~~~~ 43 (143)
+.+|||||++|+..+-.++..
T Consensus 236 v~~l~GIG~~t~~~L~~lGI~ 256 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEALGIN 256 (420)
T ss_dssp GGGSTTCCHHHHHHHHHTTCC
T ss_pred HHHccCCCHHHHHHHHHhCCC
Confidence 446789999999998776653
No 131
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=24.79 E-value=29 Score=27.06 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.6
Q ss_pred hcCCCCcHHHHHHHHHHhcC
Q 032317 24 LLLPGIGPKMAHLVMNVGWN 43 (143)
Q Consensus 24 ~~lpGIG~ktA~~Il~~~~~ 43 (143)
..+||||++|+.....++..
T Consensus 182 ~~l~GiG~~~~~~L~~~GI~ 201 (362)
T 4f4y_A 182 DEIPGIGSVLARRLNELGIQ 201 (362)
T ss_dssp TTSTTCCSTTHHHHHHTTCC
T ss_pred hhccCCCHHHHHHHHHcCCC
Confidence 35899999999998887754
No 132
>3f5b_A Aminoglycoside N(6')acetyltransferase; APC60744, legionella pneumophila subsp. pneumophila, structural genomics, PSI-2; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=23.41 E-value=52 Score=21.18 Aligned_cols=39 Identities=10% Similarity=0.297 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHHHHhcCCCccccccc-----hHHHHHHHhcccC
Q 032317 27 PGIGPKMAHLVMNVGWNNVQGICVDT-----HVHRICNRLGWVS 65 (143)
Q Consensus 27 pGIG~ktA~~Il~~~~~~~~~~pvD~-----~v~Rv~~Rl~~~~ 65 (143)
.|||......++.+++.....+-+++ ...++..++|+..
T Consensus 109 ~Gig~~ll~~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~ 152 (182)
T 3f5b_A 109 KGLSVQMIHEFILSQFSDTKIVLINPEISNERAVHVYKKAGFEI 152 (182)
T ss_dssp HHHHHHHHHHHHHHHCTTCSEEEECCBTTCHHHHHHHHHHTCEE
T ss_pred CchHHHHHHHHHHHhhCCCCEEEEecCcCCHHHHHHHHHCCCEE
Confidence 49999999999988865333344443 3588999999863
No 133
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=23.35 E-value=44 Score=27.46 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=16.9
Q ss_pred HhcCCCCcHHHHHHHHHHhcC
Q 032317 23 LLLLPGIGPKMAHLVMNVGWN 43 (143)
Q Consensus 23 L~~lpGIG~ktA~~Il~~~~~ 43 (143)
+..|||||++|+.-...++..
T Consensus 317 V~~l~GIG~~t~~kL~~lGI~ 337 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASLGIK 337 (504)
T ss_dssp GGGSTTCCHHHHHHHHHTTCC
T ss_pred hhHhhCcCHHHHHHHHHcCCC
Confidence 346899999999988777654
No 134
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=23.28 E-value=49 Score=27.87 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.1
Q ss_pred cHHHHhcCCCCcHHHHHHHHH
Q 032317 19 SLDELLLLPGIGPKMAHLVMN 39 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il~ 39 (143)
+.+.|.+|+|+|.|+|+-++.
T Consensus 478 ~~~~L~~l~g~geKsa~nL~~ 498 (586)
T 4glx_A 478 TAGKLTGLERMGPKSAQNVVN 498 (586)
T ss_dssp CHHHHHTSTTCCHHHHHHHHH
T ss_pred CHHHHhcccCccHHHHHHHHH
Confidence 458999999999999988764
No 135
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=23.27 E-value=34 Score=22.12 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=28.1
Q ss_pred HHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCC
Q 032317 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNV 45 (143)
Q Consensus 7 ~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~ 45 (143)
...+-|.+.+.+....-..++++.+.+-..++.|.|...
T Consensus 50 ~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~ 88 (145)
T 4eoz_A 50 VFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK 88 (145)
T ss_dssp HHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCc
Confidence 333444455544455667899999999999999999763
No 136
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=22.92 E-value=90 Score=26.72 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=16.8
Q ss_pred cHHHHhcCCCCcHHHHHHHH
Q 032317 19 SLDELLLLPGIGPKMAHLVM 38 (143)
Q Consensus 19 ~~~~L~~lpGIG~ktA~~Il 38 (143)
+.+.|..++|.|.|+|.-++
T Consensus 478 ~~~~L~~l~gfG~Ksa~nLl 497 (671)
T 2owo_A 478 TAGKLTGLERMGPKSAQNVV 497 (671)
T ss_dssp CHHHHHTSTTCCHHHHHHHH
T ss_pred CHHHhhcccccchhHHHHHH
Confidence 34788899999999998887
No 137
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=21.60 E-value=24 Score=23.49 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=11.2
Q ss_pred HHHHhcCCCcc-ccccchHHHHHHH
Q 032317 37 VMNVGWNNVQG-ICVDTHVHRICNR 60 (143)
Q Consensus 37 Il~~~~~~~~~-~pvD~~v~Rv~~R 60 (143)
=..|+|.++-- +.+||||.--+.+
T Consensus 14 ~~~~~~~~pmk~vvLDTNvli~~~~ 38 (147)
T 1o4w_A 14 EADRGRNNKVRCAVVDTNVLMYVYL 38 (147)
T ss_dssp --------CCEEEEECHHHHHHHHH
T ss_pred hhhhccCCCCCEEEEEhhHHHHHHH
Confidence 35788877544 7899999765543
No 138
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=20.71 E-value=52 Score=26.42 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=15.5
Q ss_pred HhcCCCCcHHHHHHHHHHhc
Q 032317 23 LLLLPGIGPKMAHLVMNVGW 42 (143)
Q Consensus 23 L~~lpGIG~ktA~~Il~~~~ 42 (143)
+.+|||||++|+..+-.++.
T Consensus 284 v~~l~GiG~~~~~~L~~lGI 303 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALGI 303 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTTC
T ss_pred HHhcCCcCHHHHHHHHHcCC
Confidence 45699999999988765544
No 139
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=20.49 E-value=51 Score=20.14 Aligned_cols=38 Identities=11% Similarity=0.331 Sum_probs=24.4
Q ss_pred HHHHHcCCCCcCcHHHHhcCCCCcHHHHHHHHHHhcCCC
Q 032317 7 ICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNV 45 (143)
Q Consensus 7 ~i~~~~~g~~p~~~~~L~~lpGIG~ktA~~Il~~~~~~~ 45 (143)
....-|.|.+.+.. .-..++++.+.+-..++.|.|...
T Consensus 37 ~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~ 74 (109)
T 2vkp_A 37 VFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDE 74 (109)
T ss_dssp HHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCC
Confidence 34444555554443 556789999999999999999863
No 140
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=20.36 E-value=49 Score=26.37 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.6
Q ss_pred HhcCCCCcHHHHHHHHH
Q 032317 23 LLLLPGIGPKMAHLVMN 39 (143)
Q Consensus 23 L~~lpGIG~ktA~~Il~ 39 (143)
+..|||||++|+.-+..
T Consensus 243 v~~l~GiG~~~~~~L~~ 259 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLES 259 (434)
T ss_dssp GGGSTTCCHHHHHHHHH
T ss_pred cccccCcCHHHHHHHHH
Confidence 45699999999998887
Done!