Your job contains 1 sequence.
>032319
MAFASSFRRALSSGSSILKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQL
VYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREARPPPP
PPYPEQQPSEMGFRTNKTVGWSG
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032319
(143 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 349 7.7e-32 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 226 8.3e-19 1
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin... 189 6.9e-15 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 185 1.8e-14 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 183 3.0e-14 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 182 3.8e-14 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 181 4.9e-14 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 178 1.0e-13 1
TAIR|locus:2171539 - symbol:RPS19 "ribosomal protein S19"... 174 2.7e-13 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 174 2.7e-13 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 172 4.4e-13 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 172 4.4e-13 1
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi... 176 6.7e-13 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 170 7.1e-13 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 170 7.1e-13 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 169 2.2e-12 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 167 2.8e-12 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 164 3.1e-12 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 160 8.2e-12 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 160 8.2e-12 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 160 8.2e-12 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 160 8.2e-12 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 8.2e-12 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 8.2e-12 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 8.2e-12 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 8.2e-12 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 8.2e-12 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 8.2e-12 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 8.2e-12 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 160 8.2e-12 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 8.2e-12 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 159 1.0e-11 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 159 1.0e-11 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 159 1.0e-11 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 159 1.0e-11 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 159 1.0e-11 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 1.1e-11 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 158 1.3e-11 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 161 1.5e-11 1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 157 1.7e-11 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 164 1.7e-11 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 160 2.0e-11 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 155 2.8e-11 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 155 2.8e-11 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 155 2.8e-11 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 161 2.8e-11 1
TAIR|locus:2168133 - symbol:AT5G59860 species:3702 "Arabi... 153 4.5e-11 1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 162 5.2e-11 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 152 5.8e-11 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 152 5.8e-11 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 152 5.8e-11 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 152 5.8e-11 1
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus... 162 7.3e-11 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 151 7.4e-11 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 151 7.4e-11 1
TAIR|locus:2164082 - symbol:AT5G53720 species:3702 "Arabi... 151 7.4e-11 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 162 7.4e-11 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 162 7.4e-11 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 162 7.4e-11 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 150 9.4e-11 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 150 9.4e-11 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 150 9.4e-11 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 161 9.4e-11 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 161 9.5e-11 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 161 9.5e-11 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 161 9.5e-11 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 161 9.7e-11 1
UNIPROTKB|G3MYJ0 - symbol:G3MYJ0 "Uncharacterized protein... 160 1.0e-10 1
UNIPROTKB|G3MXT4 - symbol:G3MXT4 "Uncharacterized protein... 160 1.0e-10 1
UNIPROTKB|G3X7M4 - symbol:G3X7M4 "Uncharacterized protein... 160 1.0e-10 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 149 1.2e-10 1
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 160 1.2e-10 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 159 1.3e-10 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 148 1.5e-10 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 148 1.5e-10 1
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi... 148 1.5e-10 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 151 1.7e-10 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 151 1.8e-10 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 147 2.0e-10 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 157 2.4e-10 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 157 2.4e-10 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 157 2.5e-10 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 146 2.5e-10 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 140 3.0e-10 2
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 151 3.7e-10 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 151 3.8e-10 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 139 3.9e-10 2
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 151 3.9e-10 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 151 3.9e-10 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 151 4.0e-10 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 151 4.0e-10 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 151 4.0e-10 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 150 4.0e-10 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 137 4.1e-10 2
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 151 4.1e-10 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 138 4.2e-10 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 154 4.5e-10 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 154 4.5e-10 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 139 4.7e-10 2
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 145 4.7e-10 1
WARNING: Descriptions of 1222 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 74/125 (59%), Positives = 89/125 (71%)
Query: 17 ILKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKG 76
+L S +R STLTSPRLFVSGLSRLTT+EKL++AFA FGQLV ++VITDR +GRSKG
Sbjct: 17 LLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKG 76
Query: 77 FGFVSYTSIEEAERAREGMNAKYLDGWVIFVDXXXXXXXXXXXXXXXXXXXXXEMGFRTN 136
FGFV+Y +IE+AE+A+ MNAK+LDGWVIFVD E GF TN
Sbjct: 77 FGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPLQQEPLRPSS-ESGFTTN 135
Query: 137 KTVGW 141
KT+GW
Sbjct: 136 KTIGW 140
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 42/76 (55%), Positives = 57/76 (75%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFVSGLS+ TT E L+ AFA FG++ +KV+TDR +G SKGFGFV Y ++E++ +
Sbjct: 55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114
Query: 93 EGMNAKYLDGWVIFVD 108
GM+ K+LDGWVIF +
Sbjct: 115 AGMDGKFLDGWVIFAE 130
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 42/90 (46%), Positives = 58/90 (64%)
Query: 18 LKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGF 77
L++ ++ N +LT ++FV GLS T E LKEAF FG++V + V+ DR +G S+GF
Sbjct: 20 LQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGF 79
Query: 78 GFVSYTSIEEAERAREGMNAKYLDGWVIFV 107
GFV+Y SIE A A + M K LDG +I V
Sbjct: 80 GFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 43/89 (48%), Positives = 58/89 (65%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S LGS+RY S+ +LFV GLS T D LK+AF FG++ + VI DR TGRS+GFGF
Sbjct: 25 SMLGSLRYMSS----KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGF 80
Query: 80 VSYTSIEEAERAREGMNAKYLDGWVIFVD 108
VS++ + A A + M+ K L+G I V+
Sbjct: 81 VSFSCEDSANNAIKEMDGKELNGRQIRVN 109
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+L+VSGLS TT++ L++ F FG L++ ++ D+ R KGF F+ Y + EEA +A +G
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 95 MNAKYLDGWVIFVD 108
M+ K+LDG VIFV+
Sbjct: 138 MHGKFLDGRVIFVE 151
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/74 (47%), Positives = 53/74 (71%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TT++ L EAF+ GQ+V ++++ DR + RSKGFGFV++ S +EA++A
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 95 MNAKYLDGWVIFVD 108
N + L+G IFVD
Sbjct: 95 FNGQQLNGRTIFVD 108
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 34/76 (44%), Positives = 55/76 (72%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S +LFVS LS TTD+ L++ F+PFGQ+ +++I D T R KGFGF+++ S ++A +A
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 93 EGMNAKYLDGWVIFVD 108
+ ++ K +DG +IFV+
Sbjct: 66 KSLDGKIVDGRLIFVE 81
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 37/74 (50%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL T D+ L+ AF+ +G ++ SK+ITDR TGRS+GFGFV++ S E +A E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 95 MNAKYLDGWVIFVD 108
MN + LDG I V+
Sbjct: 67 MNGQDLDGRNITVN 80
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/91 (40%), Positives = 60/91 (65%)
Query: 18 LKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGF 77
+ S LGS+RY ST +L++ GLS T + LK+AF+ F + ++V+T++ TGRS+G+
Sbjct: 19 VSSMLGSLRYMST----KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGY 74
Query: 78 GFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108
GFV++ S + A A MN + L+G+ I V+
Sbjct: 75 GFVNFISEDSANSAISAMNGQELNGFNISVN 105
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 41/83 (49%), Positives = 53/83 (63%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S LGS+R ST +LF+ GLS T D L++AFA FG +V +KVI DR TGRS+GFGF
Sbjct: 25 SMLGSLRLMST----KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF 80
Query: 80 VSYTSIEEAERAREGMNAKYLDG 102
V++ A A M+ K L+G
Sbjct: 81 VNFNDEGAATAAISEMDGKELNG 103
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 39/75 (52%), Positives = 51/75 (68%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAER-ARE 93
R FV GL+ T DE L+ F+ FG ++ SK+I DR +GRS+GFGFV++ E+A R A E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD-EKAMRDAIE 65
Query: 94 GMNAKYLDGWVIFVD 108
MN K LDG VI V+
Sbjct: 66 EMNGKELDGRVITVN 80
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 35/74 (47%), Positives = 51/74 (68%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TT++ L+EAF+ +G + VI DR T RS+GFGFV++ + E+A+ A
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG +I VD
Sbjct: 84 MNGKQVDGRMIRVD 97
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 176 (67.0 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 34/74 (45%), Positives = 52/74 (70%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF++GLS T+++ L+ AF FG+LV K+I D+ + RSKG+ F+ YT+ E A A +
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 95 MNAKYLDGWVIFVD 108
MN K ++GW+I VD
Sbjct: 343 MNGKIINGWMIVVD 356
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R++V LS TTD+ L+EAF+ +G +V + V+ DR T RS+GFGFV+Y+S EAE A G
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 95 MNAKYLDG 102
M+ K L+G
Sbjct: 64 MDGKELNG 71
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL+ T D L+ AFA +G ++ SK+I DR TGRS+GFGFV++ + + A EG
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 95 MNAKYLDGWVIFVD 108
MN + LDG I V+
Sbjct: 69 MNGQDLDGRSITVN 82
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 169 (64.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 32/78 (41%), Positives = 55/78 (70%)
Query: 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAER 90
++S +LF+ G++ ++ L+EAF +G++V ++VI DR TGRS+GFGFV++TS E A
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 91 AREGMNAKYLDGWVIFVD 108
A + ++ + L G V+ V+
Sbjct: 97 AIQALDGRDLHGRVVKVN 114
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 167 (63.8 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 37/83 (44%), Positives = 57/83 (68%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S L SIR ++S ++FV G+S T + L+EAF+ +G++V +K+I DR TGRS+GF F
Sbjct: 23 SMLQSIR---CMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAF 79
Query: 80 VSYTSIEEAERAREGMNAKYLDG 102
V++TS EEA A + ++ + L G
Sbjct: 80 VTFTSTEEASNAMQ-LDGQDLHG 101
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 33/74 (44%), Positives = 51/74 (68%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TT++ L++AF+ +G + V +R T RS+GFGFV++ + ++A+ A EG
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 66 MNGKSVDGRTIRVD 79
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ TTD+ L+E F+ +G + + V+ DR T RS+GFGFV + S EA+ A
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 95 MNAKYLDGWVIFVD 108
MN + DG +I VD
Sbjct: 63 MNNQEFDGRIIRVD 76
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GL+ TT+E L++ F+ +GQ+ V+ DR + RS+GFGFV++ + E+A+ A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/76 (43%), Positives = 52/76 (68%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV G+S +T+E L +AF+ +GQ++ VI D+ R KGF +V+++S EEAE+A
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 93 EGMNAKYLDGWVIFVD 108
+NA+ +DG V+ +D
Sbjct: 80 LELNAQLVDGRVVILD 95
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 160 (61.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L+ F+ +GQ+ V+ DR T RS+GFGFV++ + E+A+ A G
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKTVDGRQIRVD 80
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 161 (61.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 196 SKTLFVKGLSEDTTEETLKESFD--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 252
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 253 EAMEDGEIDGNKVTLD 268
Score = 97 (39.2 bits), Expect = 0.00019, P = 0.00019
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S E+A+ A
Sbjct: 110 SKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASFEDAKEAL 165
Query: 93 EGMNAKYLDGWVI 105
N + ++G I
Sbjct: 166 NSCNKREIEGRAI 178
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R F+ GL+ T+D L++AF +G LV +KV+ D+ +GRS+GFGF+++ + + A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 95 MNAKYLDGWVIFVD 108
MN LDG I VD
Sbjct: 68 MNGMDLDGRTITVD 81
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 35/65 (53%), Positives = 45/65 (69%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS ++KL+EAF PFG + +KVI D T +SKG+GFVSY EEAERA E M
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 96 NAKYL 100
N ++L
Sbjct: 197 NGQWL 201
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 160 (61.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/74 (44%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAER 90
L +L V GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 91 AREGMNAKYLDGWVIFVD 108
A MN K +DG I VD
Sbjct: 63 AMMAMNGKSVDGRQIRVD 80
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAER 90
L +L V GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 91 AREGMNAKYLDGWVIFVD 108
A MN K +DG I VD
Sbjct: 63 AMMAMNGKSVDGRQIRVD 80
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/78 (42%), Positives = 50/78 (64%)
Query: 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAER 90
L +L V GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+
Sbjct: 3 LDEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 91 AREGMNAKYLDGWVIFVD 108
A MN K +DG I VD
Sbjct: 63 AMMAMNGKSVDGRQIRVD 80
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 161 (61.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G + ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 225 SKTLFVKGLSEETTEETLKESFD--GS-IRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 281
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 282 EAMEDGEIDGNKVTLD 297
Score = 97 (39.2 bits), Expect = 0.00027, P = 0.00027
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S L+ T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 132 NSTWSGESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASF 187
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 188 EDAKEALNSCNKREIEGRAI 207
>TAIR|locus:2168133 [details] [associations]
symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
KEGG:ath:AT5G59860 Uniprot:F4JXD2
Length = 157
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/70 (44%), Positives = 49/70 (70%)
Query: 39 SGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK 98
SGLS TTD+ L++ FAPF +L I D+ T R KGFGF+++ S ++A++A + +N K
Sbjct: 76 SGLSAYTTDQSLRQLFAPFARL-----IKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Query: 99 YLDGWVIFVD 108
++G +IFV+
Sbjct: 131 IVNGRLIFVE 140
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 162 (62.1 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 428 SKTLFVKGLSEDTTEETLKESFE--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKTAK 484
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 485 EAMEDGEIDGNKVTLD 500
Score = 95 (38.5 bits), Expect = 0.00083, P = 0.00083
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV G+SKG+ F+ + S
Sbjct: 335 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKV-PQNPHGKSKGYAFIEFASF 390
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N ++G I
Sbjct: 391 EDAKEALNSCNKMEIEGRTI 410
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE LKE F+ FG+ + KV+ D G+SKGFGFVSY E+A +A E M
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 164
Query: 96 NAKYLDGWVIFV 107
N K + G +IFV
Sbjct: 165 NGKEISGKIIFV 176
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GL+ T ++ L++ F+ FG + V+ DR T RS+GFGF+++T+ E A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 95 MNAKYLDGWVIFVD 108
MN + LDG I VD
Sbjct: 67 MNGESLDGRQIRVD 80
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 30/74 (40%), Positives = 50/74 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ T ++ L++AF +G++ V+ DR T RS+GFGFV++ ++++A+ A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 66 MNGKSVDGRQIRVD 79
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ T +E L++ F+ +GQ+ V+ DR T RS+GFGFV++ + ++A+ A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 95 MNAKYLDGWVIFVD 108
MN K +DG I VD
Sbjct: 66 MNGKAVDGRQIRVD 79
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 162 (62.1 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 568 SKTLFVKGLSEDTTEETLKESFE--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 624
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 625 EAMEDGEIDGNKVTLD 640
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 35 RLFVSGLSRLTTDEK-LKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93
+LFV GL+ TDE+ L++ F+ FG + V+ DR T RS+GFGF+++T+ E A A
Sbjct: 7 KLFVGGLN-FNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMR 65
Query: 94 GMNAKYLDGWVIFVD 108
MN + LDG I VD
Sbjct: 66 AMNGESLDGRQIRVD 80
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 96 NAKYLDG 102
++L G
Sbjct: 168 GGQWLGG 174
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+++V+GL +T E L F FG++VY+KV+ D AT RSKGFGFV++ +E A RA E
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 95 MNAKYLDG 102
N +DG
Sbjct: 70 PNHT-IDG 76
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 162 (62.1 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 574 SKTLFVKGLSEDTTEETLKESFE--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 630
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 631 EAMEDGEIDGNKVTLD 646
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 162 (62.1 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFE--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 627
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 628 EAMEDGEIDGNKVTLD 643
Score = 96 (38.9 bits), Expect = 0.00087, P = 0.00087
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 478 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQQ-GKSKGYAFIEFASF 533
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N ++G I
Sbjct: 534 EDAKEALNSCNKMEIEGRTI 553
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 162 (62.1 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 575 SKTLFVKGLSEDTTEETLKESFE--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 631
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 632 EAMEDGEIDGNKVTLD 647
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+L+V L+ D L+ FA +G + ++V+ DRATGRS+GFGFV S +EA+ A G
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 95 MNAKYLDGWVIFVD 108
+N K +DG + V+
Sbjct: 64 LNGKEMDGRNLMVN 77
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GL+ T ++ L++ F+ FG + V+ DR T RS+GFGF+++T+ E A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 95 MNAKYLDGWVIFVD 108
MN + LDG I VD
Sbjct: 67 MNGESLDGRQIRVD 80
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GL+ T ++ L++ F+ FG + V+ DR T RS+GFGF+++T+ E A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 95 MNAKYLDGWVIFVD 108
MN + LDG I VD
Sbjct: 67 MNGESLDGRQIRVD 80
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 161 (61.7 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFD--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 627
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 628 EAMEDGEIDGNKVTLD 643
Score = 100 (40.3 bits), Expect = 0.00032, P = 0.00032
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 478 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASF 533
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 534 EDAKEALNSCNKREIEGRAI 553
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 161 (61.7 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 572 SKTLFVKGLSEDTTEETLKESFD--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 628
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 629 EAMEDGEIDGNKVTLD 644
Score = 100 (40.3 bits), Expect = 0.00032, P = 0.00032
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 479 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASF 534
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 535 EDAKEALNSCNKREIEGRAI 554
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 161 (61.7 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 573 SKTLFVKGLSEDTTEETLKESFD--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 629
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 630 EAMEDGEIDGNKVTLD 645
Score = 100 (40.3 bits), Expect = 0.00032, P = 0.00032
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 480 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASF 535
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 536 EDAKEALNSCNKREIEGRAI 555
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 161 (61.7 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 576 SKTLFVKGLSEDTTEETLKESFD--GS-VRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 632
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 633 EAMEDGEIDGNKVTLD 648
Score = 100 (40.3 bits), Expect = 0.00032, P = 0.00032
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 483 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASF 538
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 539 EDAKEALNSCNKREIEGRAI 558
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 161 (61.7 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G + ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 584 SKTLFVKGLSEETTEETLKESFD--GS-IRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 640
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 641 EAMEDGEIDGNKVTLD 656
Score = 97 (39.2 bits), Expect = 0.00069, P = 0.00069
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S L+ T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 491 NSTWSGESKTLVLSNLAYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASF 546
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 547 EDAKEALNSCNKREIEGRAI 566
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G + ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 486 SKTLFVKGLSEDTTEETLKESFD--GS-IRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 542
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 543 EAMEDGEIDGNKVTLD 558
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 393 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASF 448
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 449 EDAKEALNSCNKREIEGRAI 468
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G + ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 491 SKTLFVKGLSEDTTEETLKESFD--GS-IRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 547
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 548 EAMEDGEIDGNKVTLD 563
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 398 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASF 453
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 454 EDAKEALNSCNKREIEGRAI 473
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 160 (61.4 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G + ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 491 SKTLFVKGLSEDTTEETLKESFD--GS-IRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 547
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 548 EAMEDGEIDGNKVTLD 563
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 398 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASF 453
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 454 EDAKEALNSCNKREIEGRAI 473
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GL+ T ++ L++ F+ FG + V+ DR T RS+GFGF+++T+ E A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 95 MNAKYLDGWVIFVD 108
MN + LDG I VD
Sbjct: 67 MNGESLDGRQIRVD 80
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 160 (61.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 36/76 (47%), Positives = 50/76 (65%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F G + ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 581 SKTLFVKGLSEDTTEETLKESFD--GS-IRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 637
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 638 EAMEDGEIDGNKVTLD 653
Score = 99 (39.9 bits), Expect = 0.00042, P = 0.00042
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 488 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATHIKVPQNQ-NGKSKGYAFIEFASF 543
Query: 86 EEAERAREGMNAKYLDGWVI 105
E+A+ A N + ++G I
Sbjct: 544 EDAKEALNSCNKREIEGRAI 563
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 159 (61.0 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 37/92 (40%), Positives = 53/92 (57%)
Query: 18 LKSQLGSIRYN--STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSK 75
LK Q ++R + LFV L EKL+E F PFG + +KV+ D A G+SK
Sbjct: 318 LKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEA-GKSK 376
Query: 76 GFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107
GFGFV +T+ EEA +A MN + ++G ++V
Sbjct: 377 GFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L ++ L + F+ FG+++ KV TD G+SK FGFV Y + E AE A E +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENV 200
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 201 NGMLLNDREVFV 212
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++V + ++E ++ F+PFG++ + D+ G+SKGFGFV++ E A +A E +
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 96 NAKYLDGWVIFV 107
N K ++G I+V
Sbjct: 294 NDKEINGQKIYV 305
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S L+V L+ + L E F+P GQ+ +V D + +S G+ +V+Y E+ E+A
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 93 EGMNAKYLDG 102
E +N ++G
Sbjct: 111 EELNYNPIEG 120
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 34/89 (38%), Positives = 50/89 (56%)
Query: 19 KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
+ + +R T +FV + DEKLKE F +G KVI D A+G+SKGFG
Sbjct: 20 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFG 78
Query: 79 FVSYTSIEEAERAREGMNAKYLDGWVIFV 107
FV Y + E A++A ++ K +DG V++V
Sbjct: 79 FVRYETHEAAQKAVLDLHGKSIDGKVLYV 107
Score = 125 (49.1 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ L DEKLKE F+ FG + +KV+ + G+ KGFG V ++S EEA +A + M
Sbjct: 140 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 197
Query: 96 NAK 98
N +
Sbjct: 198 NGR 200
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 96 NAKYLDG 102
++L G
Sbjct: 120 GGQWLGG 126
>TAIR|locus:2179624 [details] [associations]
symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
Length = 172
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
S+++S LFV G S ++ +LK+ F+ FGQ+ K+I + T +S G+G+V + S E+A
Sbjct: 74 SSISS--LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDA 131
Query: 89 ERAREGMNAKYLDGWVIFV 107
+ A E MN K+ DG I V
Sbjct: 132 QSAVEAMNGKFFDGRFILV 150
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 151 (58.2 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 96 NAKYLDG 102
++L G
Sbjct: 153 GGQWLGG 159
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 151 (58.2 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 96 NAKYLDG 102
++L G
Sbjct: 157 GGQWLGG 163
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 32/74 (43%), Positives = 45/74 (60%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GL+ T ++ L++ F FG + V+ DR T RS+GFGF+++T E A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 95 MNAKYLDGWVIFVD 108
MN + LDG I VD
Sbjct: 67 MNGESLDGRQIRVD 80
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 157 (60.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E L+E+F G + ++++TDR TG SKGFGFV ++S E+A+ A+
Sbjct: 550 SKTLFVRGLSEDTTEETLRESFE--GS-ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 606
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 607 EAMEDGEIDGNKVTLD 622
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 157 (60.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E L+E+F G + ++++TDR TG SKGFGFV ++S E+A+ A+
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFE--GS-ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 609 EAMEDGEIDGNKVTLD 624
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 157 (60.3 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E L+E+F G + ++++TDR TG SKGFGFV ++S E+A+ A+
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFE--GS-ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG + +D
Sbjct: 609 EAMEDGEIDGNKVTLD 624
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GL+ T ++ L++ F+ FG + V+ DR T RS+GFGF+++T+ E A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 95 MNAKYLDGWVIFVD 108
MN + LDG I VD
Sbjct: 67 MNGESLDGRQIRVD 80
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 140 (54.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 24/71 (33%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ FG+++ S+++ D+ TG S+G GF+ + E
Sbjct: 148 SASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVE 207
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 208 AEEAIKGLNGQ 218
Score = 114 (45.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++AE+A +
Sbjct: 70 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 129
Query: 96 N 96
N
Sbjct: 130 N 130
Score = 105 (42.0 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 32 (16.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 377 QVSFKTNKT 385
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 151 (58.2 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 96 NAKYLDG 102
++L G
Sbjct: 157 GGQWLGG 163
Score = 93 (37.8 bits), Expect = 0.00076, P = 0.00076
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ FV + S E A A +
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 258
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 259 NGTTIEGHVV 268
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 151 (58.2 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 96 NAKYLDG 102
++L G
Sbjct: 157 GGQWLGG 163
Score = 93 (37.8 bits), Expect = 0.00077, P = 0.00077
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ F+ ++S E A A +
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSV 258
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 259 NGTTIEGHVV 268
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 139 (54.0 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 147 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIE 206
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 207 AEEAIKGLNGQ 217
Score = 118 (46.6 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
N+ + L V+ L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++
Sbjct: 61 NTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKD 120
Query: 88 AERAREGMN 96
AE+A +N
Sbjct: 121 AEKAINTLN 129
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 32 (16.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 377 QVSFKTNKT 385
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 151 (58.2 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 96 NAKYLDG 102
++L G
Sbjct: 164 GGQWLGG 170
Score = 93 (37.8 bits), Expect = 0.00079, P = 0.00079
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ F+ ++S E A A +
Sbjct: 212 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSV 265
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 266 NGTTIEGHVV 275
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 151 (58.2 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 96 NAKYLDG 102
++L G
Sbjct: 168 GGQWLGG 174
Score = 93 (37.8 bits), Expect = 0.00079, P = 0.00079
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ FV + S E A A +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 269
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 270 NGTTIEGHVV 279
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 151 (58.2 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 96 NAKYLDG 102
++L G
Sbjct: 168 GGQWLGG 174
Score = 93 (37.8 bits), Expect = 0.00080, P = 0.00080
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ FV + S E A A +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 269
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 270 NGTTIEGHVV 279
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 151 (58.2 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 96 NAKYLDG 102
++L G
Sbjct: 168 GGQWLGG 174
Score = 94 (38.1 bits), Expect = 0.00062, P = 0.00062
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ FV ++S E A A +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 269
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 270 NGTTIEGHVV 279
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 151 (58.2 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 96 NAKYLDG 102
++L G
Sbjct: 168 GGQWLGG 174
Score = 93 (37.8 bits), Expect = 0.00080, P = 0.00080
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ FV + S E A A +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 269
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 270 NGTTIEGHVV 279
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 150 (57.9 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93
P +++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A +
Sbjct: 191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 94 GMNAKYLDGWVIFV 107
MN K L+G I+V
Sbjct: 250 EMNGKELNGKQIYV 263
Score = 121 (47.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
L+V L DE+L++AF+PFG + +KV+ + GRSKGFGFV ++S EEA
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
Score = 110 (43.8 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L + ++ L + + FG ++ V+ D G SKG+GFV + + E AERA + M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKM 158
Query: 96 NAKYLDGWVIFV 107
N L+G +FV
Sbjct: 159 NGMLLNGRKVFV 170
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 137 (53.3 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 179 AEEAIKGLNGQ 189
Score = 116 (45.9 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
N+ + L V+ L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 88 AERAREGMN 96
AE+A +N
Sbjct: 93 AEKAINTLN 101
Score = 106 (42.4 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 325 NGYRLGDRVLQV 336
Score = 32 (16.3 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 335 QVSFKTNKT 343
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 151 (58.2 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A + M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 96 NAKYLDG 102
++L G
Sbjct: 168 GGQWLGG 174
Score = 93 (37.8 bits), Expect = 0.00082, P = 0.00082
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ FV + S E A A +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 269
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 270 NGTTIEGHVV 279
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 138 (53.6 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 24/75 (32%), Positives = 49/75 (65%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 131 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 190
Query: 88 AERAREGMNAKYLDG 102
AE A +G+N + G
Sbjct: 191 AEEAIKGLNGQKPSG 205
Score = 108 (43.1 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS + + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 350 NGYRLGDRVLQV 361
Score = 107 (42.7 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T E+ + F G++ K++ D+ TG+S G+GFV+Y ++AE+A +
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 96 N 96
N
Sbjct: 113 N 113
Score = 32 (16.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 360 QVSFKTNKT 368
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE LKE F+ FG+ + KV+ D +G+SKGFGFVSY E+A +A E M
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 96 NAKYLDGWVIFV 107
N K + G VIFV
Sbjct: 252 NGKEISGKVIFV 263
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 354 NGRIVGSKPLYV 365
Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A++A E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 154 (59.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE LKE F+ FG+ + KV+ D +G+SKGFGFVSY E+A +A E M
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 96 NAKYLDGWVIFV 107
N K + G VIFV
Sbjct: 252 NGKEISGKVIFV 263
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 354 NGRIVGSKPLYV 365
Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A++A E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 139 (54.0 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 24/75 (32%), Positives = 49/75 (65%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 168 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIE 227
Query: 88 AERAREGMNAKYLDG 102
AE A +G+N + G
Sbjct: 228 AEEAIKGLNGQKPSG 242
Score = 108 (43.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS + + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 387 NGYRLGDRVLQV 398
Score = 107 (42.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T E+ + F G++ K++ D+ TG+S G+GFV+Y ++AE+A +
Sbjct: 90 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 149
Query: 96 N 96
N
Sbjct: 150 N 150
Score = 32 (16.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 397 QVSFKTNKT 405
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 145 (56.1 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 18 LKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGF 77
L++ SI+ ++T T ++FV GL TTD L++ F FG + + VITDR TG+S+G+
Sbjct: 11 LETMYPSIQKDTTFT--KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGY 68
Query: 78 GFVSYTSIEEAERAREGMNAKYLDG 102
GFV+ AERA + N +DG
Sbjct: 69 GFVTMMDKSAAERACKDPNP-IIDG 92
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 137 (53.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 179 AEEAIKGLNGQ 189
Score = 116 (45.9 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
N+ + L V+ L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 88 AERAREGMN 96
AE+A +N
Sbjct: 93 AEKAINTLN 101
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 32 (16.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 348 QVSFKTNKT 356
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 137 (53.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 179 AEEAIKGLNGQ 189
Score = 109 (43.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
N+ + L + L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 88 AERAREGMN 96
AE+A +N
Sbjct: 93 AEKAINTLN 101
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 32 (16.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 348 QVSFKTNKT 356
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 137 (53.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 179 AEEAIKGLNGQ 189
Score = 109 (43.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
N+ + L + L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 88 AERAREGMN 96
AE+A +N
Sbjct: 93 AEKAINTLN 101
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 338 NGYRLGDRVLQV 349
Score = 32 (16.3 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 348 QVSFKTNKT 356
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 137 (53.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 179 AEEAIKGLNGQ 189
Score = 116 (45.9 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
N+ + L V+ L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 88 AERAREGMN 96
AE+A +N
Sbjct: 93 AEKAINTLN 101
Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 339 NGYRLGDRVLQV 350
Score = 32 (16.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 349 QVSFKTNKT 357
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAK 98
MN K
Sbjct: 67 MNGK 70
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAK 98
MN K
Sbjct: 67 MNGK 70
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 154 (59.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE LKE F+ FG+ + KV+ D +G+SKGFGFVSY E+A +A E M
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 96 NAKYLDGWVIFV 107
N K + G VIFV
Sbjct: 292 NGKEISGKVIFV 303
Score = 138 (53.6 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 393
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 394 NGRIVGSKPLYV 405
Score = 104 (41.7 bits), Expect = 0.00012, P = 0.00012
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A++A E M
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 198
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 199 NGMLLNDRKVFV 210
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 153 (58.9 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE LKE F+ FG+ + KV+ D +G+SKGFGFVSY E+A +A E M
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 96 NAKYLDGWVIFV 107
N K + G VIFV
Sbjct: 252 NGKEITGKVIFV 263
Score = 138 (53.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 354 NGRIVGSKPLYV 365
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A++A E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 152 (58.6 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE LKE F+ FG+ + KV+ D G+SKGFGFVSY E+A +A E M
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 153
Query: 96 NAKYLDGWVIFV 107
N K + G +IFV
Sbjct: 154 NGKEISGKIIFV 165
Score = 138 (53.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 255
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 256 NGRIVGSKPLYV 267
Score = 104 (41.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A++A E M
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 60
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 61 NGMLLNDRKVFV 72
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 149 (57.5 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 30/61 (49%), Positives = 47/61 (77%)
Query: 47 DEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106
DE+LK+ F+ +G+ + KV+TD ++G+SKGFGFVS+ S E A++A E MN + ++G +IF
Sbjct: 203 DERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIF 261
Query: 107 V 107
V
Sbjct: 262 V 262
Score = 118 (46.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L E F+ FG+++ SKV++D G SKG+ FV + + A+RA E M
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEM 157
Query: 96 NAKYLDGWVIFV 107
N K L G +FV
Sbjct: 158 NGKLLKGCKVFV 169
Score = 115 (45.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+L++ L DEKL+ F+ FG + KV+ + G+SKGFG + ++S E+A +A
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 351
Query: 95 MNAKYL 100
MN + L
Sbjct: 352 MNGRIL 357
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 137 (53.3 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 147 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 206
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 207 AEEAIKGLNGQ 217
Score = 116 (45.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
N+ + L V+ L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++
Sbjct: 61 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 120
Query: 88 AERAREGMN 96
AE+A +N
Sbjct: 121 AEKAINTLN 129
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 366 NGYRLGDRVLQV 377
Score = 32 (16.3 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 376 QVSFKTNKT 384
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 137 (53.3 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 148 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 207
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 208 AEEAIKGLNGQ 218
Score = 116 (45.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
N+ + L V+ L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++
Sbjct: 62 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 121
Query: 88 AERAREGMN 96
AE+A +N
Sbjct: 122 AEKAINTLN 130
Score = 106 (42.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 367 NGYRLGDRVLQV 378
Score = 32 (16.3 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 377 QVSFKTNKT 385
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 47 DEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106
DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + MN K L+G I+
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 60
Query: 107 V 107
V
Sbjct: 61 V 61
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
+S S +LF+ GLS ++ LK+AF+ FG++ ++ D+ +GRS+GFGFV + +
Sbjct: 35 SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94
Query: 88 AERAREGMNAKYLDG 102
A A++ M+ K L G
Sbjct: 95 ALSAKDAMDGKGLLG 109
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 152 (58.6 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE LKE F+ FG+ + KV+ D G+SKGFGFVSY E+A +A E M
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 96 NAKYLDGWVIFV 107
N K + G +IFV
Sbjct: 252 NGKEISGKIIFV 263
Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 354 NGRIVGSKPLYV 365
Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A++A E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 137 (53.3 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 159 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 218
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 219 AEEAIKGLNGQ 229
Score = 106 (42.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 379 NGYRLGDRVLQV 390
Score = 32 (16.3 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 389 QVSFKTNKT 397
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 152 (58.6 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 47 DEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106
DE+LKE F+ +G+ + KV+TD TG+SKGFGFVS+ E+A +A E MN K ++G ++F
Sbjct: 204 DERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVF 262
Query: 107 V 107
V
Sbjct: 263 V 263
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 354 NGRIVGSKPLYV 365
Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + + A+RA E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 152 (58.6 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE LKE F+ FG+ + KV+ D G+SKGFGFVSY E+A +A E M
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 96 NAKYLDGWVIFV 107
N K + G +IFV
Sbjct: 252 NGKEISGKIIFV 263
Score = 138 (53.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 354 NGRIVGSKPLYV 365
Score = 104 (41.7 bits), Expect = 0.00011, P = 0.00011
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A++A E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAADKAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 148 (57.2 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 NAKYLDG 102
++L G
Sbjct: 176 GGQWLGG 182
Score = 93 (37.8 bits), Expect = 0.00074, P = 0.00074
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 270
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 271 AHAIVSVNGTTIEGHVV 287
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 148 (57.2 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 NAKYLDG 102
++L G
Sbjct: 176 GGQWLGG 182
Score = 93 (37.8 bits), Expect = 0.00075, P = 0.00075
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 270
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 271 AHAIVSVNGTTIEGHVV 287
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 147 (56.8 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 28 NSTLTS-PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIE 86
N+T T ++FV GL+ T + ++ F FG++V + VITD+ TGRSKG+GFV++ E
Sbjct: 15 NTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAE 74
Query: 87 EAERAREGMNAKYLDG 102
A RA + MN +DG
Sbjct: 75 AAMRACQNMNP-VIDG 89
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 148 (57.2 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 96 NAKYLDG 102
++L G
Sbjct: 159 GGQWLGG 165
Score = 93 (37.8 bits), Expect = 0.00077, P = 0.00077
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 200 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 253
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 254 AHAIVSVNGTTIEGHVV 270
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 149 (57.5 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 30/61 (49%), Positives = 47/61 (77%)
Query: 47 DEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106
DE+LK+ F+ +G+ + KV+TD ++G+SKGFGFVS+ S E A++A E MN + ++G +IF
Sbjct: 261 DERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIF 319
Query: 107 V 107
V
Sbjct: 320 V 320
Score = 118 (46.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L E F+ FG+++ SKV++D G SKG+ FV + + A+RA E M
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEM 215
Query: 96 NAKYLDGWVIFV 107
N K L G +FV
Sbjct: 216 NGKLLKGCKVFV 227
Score = 115 (45.5 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+L++ L DEKL+ F+ FG + KV+ + G+SKGFG + ++S E+A +A
Sbjct: 352 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 409
Query: 95 MNAKYL 100
MN + L
Sbjct: 410 MNGRIL 415
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 148 (57.2 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 96 NAKYLDG 102
++L G
Sbjct: 159 GGQWLGG 165
Score = 93 (37.8 bits), Expect = 0.00078, P = 0.00078
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 200 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 253
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 254 AHAIVSVNGTTIEGHVV 270
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 148 (57.2 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 34/89 (38%), Positives = 50/89 (56%)
Query: 19 KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
+ + +R T +FV + DEKLKE F +G KVI D A+G+SKGFG
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFG 242
Query: 79 FVSYTSIEEAERAREGMNAKYLDGWVIFV 107
FV Y + E A++A ++ K +DG V++V
Sbjct: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ L DEKLKE F+ FG + +KV+ + G+ KGFG V ++S EEA +A + M
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 96 NAK 98
N +
Sbjct: 362 NGR 364
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 147 (56.8 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 30/68 (44%), Positives = 50/68 (73%)
Query: 36 LFVSGLS-RLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+FV LS ++TD+ ++ AFAPFG++ ++V+ D ATG+SKG+GF+S+ + +AE A +
Sbjct: 99 VFVGDLSPEISTDD-VRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQ 157
Query: 95 MNAKYLDG 102
MN ++L G
Sbjct: 158 MNGQWLGG 165
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 20 LGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHA 79
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 80 NGMELDGRRIRVD 92
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 148 (57.2 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 31/68 (45%), Positives = 49/68 (72%)
Query: 36 LFVSGLS-RLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+FV LS +TTD+ ++ AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A +
Sbjct: 98 VFVGDLSPEITTDD-IRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 156
Query: 95 MNAKYLDG 102
M ++L G
Sbjct: 157 MGGQWLGG 164
Score = 94 (38.1 bits), Expect = 0.00062, P = 0.00062
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ FV + S E A A +
Sbjct: 206 VYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFNSHESAAHAIVSV 259
Query: 96 NAKYLDGWVI 105
N L+G ++
Sbjct: 260 NGTSLEGHIV 269
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 148 (57.2 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 96 NAKYLDG 102
++L G
Sbjct: 175 GGQWLGG 181
Score = 93 (37.8 bits), Expect = 0.00081, P = 0.00081
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 216 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 269
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 270 AHAIVSVNGTTIEGHVV 286
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 148 (57.2 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 NAKYLDG 102
++L G
Sbjct: 176 GGQWLGG 182
Score = 93 (37.8 bits), Expect = 0.00081, P = 0.00081
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 270
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 271 AHAIVSVNGTTIEGHVV 287
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 148 (57.2 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 NAKYLDG 102
++L G
Sbjct: 176 GGQWLGG 182
Score = 93 (37.8 bits), Expect = 0.00082, P = 0.00082
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 270
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 271 AHAIVSVNGTTIEGHVV 287
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 148 (57.2 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 NAKYLDG 102
++L G
Sbjct: 176 GGQWLGG 182
Score = 93 (37.8 bits), Expect = 0.00082, P = 0.00082
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 270
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 271 AHAIVSVNGTTIEGHVV 287
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 148 (57.2 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 NAKYLDG 102
++L G
Sbjct: 176 GGQWLGG 182
Score = 93 (37.8 bits), Expect = 0.00082, P = 0.00082
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 270
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 271 AHAIVSVNGTTIEGHVV 287
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 148 (57.2 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 96 NAKYLDG 102
++L G
Sbjct: 176 GGQWLGG 182
Score = 93 (37.8 bits), Expect = 0.00082, P = 0.00082
Identities = 21/77 (27%), Positives = 44/77 (57%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+SP+ ++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A
Sbjct: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESA 270
Query: 89 ERAREGMNAKYLDGWVI 105
A +N ++G V+
Sbjct: 271 AHAIVSVNGTTIEGHVV 287
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 145 (56.1 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++A+ A E
Sbjct: 137 LGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERA 196
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 197 NGMELDGRRIRVD 209
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 143 (55.4 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 84
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 85 NGKELNGKQIYV 96
Score = 128 (50.1 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 186
Query: 96 NAK 98
N +
Sbjct: 187 NGR 189
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 64
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 65 MNARPHKVDGRVV 77
Score = 88 (36.0 bits), Expect = 0.00092, P = 0.00092
Identities = 19/71 (26%), Positives = 40/71 (56%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 84 SREDSRRPGAHLTVKKIFVG---EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 140
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 141 VTFDDHDSVDK 151
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93
P +++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A +
Sbjct: 191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 94 GMNAKYLDGWVIFV 107
MN K L+G I+V
Sbjct: 250 EMNGKELNGKQIYV 263
Score = 133 (51.9 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++AF+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAK 98
N +
Sbjct: 354 NGR 356
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L + ++ L + + FG ++ V+ D G SKG+GFV + + E AERA + M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKM 158
Query: 96 NAKYLDGWVIFV 107
N L+G +FV
Sbjct: 159 NGMLLNGRKVFV 170
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 150 (57.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
LF+ L DE+LK F+ FG + +K++TD G+SKGFGFV YT+ EEA +A M
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEM 424
Query: 96 NAKYLDGWVIFV 107
N + L G ++V
Sbjct: 425 NQRMLAGKPLYV 436
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L ++ L + F+ FG+++ KV D G +KG+GFV + S+E A A E +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHV 228
Query: 96 NAKYLDGWVIFV 107
N L+ ++V
Sbjct: 229 NGMLLNDKKVYV 240
Score = 100 (40.3 bits), Expect = 0.00029, P = 0.00029
Identities = 22/89 (24%), Positives = 50/89 (56%)
Query: 19 KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
+S++ +++ N T +++ L T+++ + F FG++ ++ D+ + +GFG
Sbjct: 250 QSKVEALKANFT----NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFG 304
Query: 79 FVSYTSIEEAERAREGMNAKYLDGWVIFV 107
FV+Y + E A++A + +N K G ++V
Sbjct: 305 FVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 97 (39.2 bits), Expect = 0.00061, P = 0.00061
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
TS L+V L T+ L E F G + +V D T RS G+ +V++ ++E+ E+A
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 92 REGMNAKYLDG 102
+ +N + G
Sbjct: 138 LDELNYTLIKG 148
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 67
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 68 MNARPHKVDGRVV 80
Score = 94 (38.1 bits), Expect = 0.00019, P = 0.00019
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAER 90
++FV + T + L++ F +G+ +++TDR +G+ +GF FV++ + ++
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDK 156
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 24 SIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYT 83
+++ ++T T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+
Sbjct: 3 TVQKDTTFT--KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 84 SIEEAERAREGMNAKYLDG 102
AERA + N +DG
Sbjct: 61 DRAAAERACKDPNP-IIDG 78
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
LF+ GL+ T ++ L++ F+ FG + V+ DR T RS+GF F+++T+ E A A M
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 96 NAKYLDGWVIFVD 108
N K LDG I VD
Sbjct: 68 NGKSLDGRQIRVD 80
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 20 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 79
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 80 NGMELDGRRIRVD 92
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 20 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 79
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 80 NGMELDGRRIRVD 92
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GL+ T ++ L++ F+ FG + V+ D T RS+GFGF+++T+ E A A
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 95 MNAKYLDGWVIFVD 108
N + LDG I VD
Sbjct: 67 TNGESLDGRQIHVD 80
>UNIPROTKB|Q8N7X1 [details] [associations]
symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
Length = 1067
Score = 152 (58.6 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 33/74 (44%), Positives = 47/74 (63%)
Query: 35 RLFVSGLSRLTTDEK-LKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93
+LF+ GL+ L TDEK LK F +G ++ ++ DR T +S+GF FV++ S +A+ A
Sbjct: 9 KLFIGGLN-LKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAAR 67
Query: 94 GMNAKYLDGWVIFV 107
MN KYLDG I V
Sbjct: 68 DMNGKYLDGKAIMV 81
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 132 (51.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
+ ++ L+VSGL + + L+ FA FG+++ S+++ D +G SKG GF+ + E
Sbjct: 124 SESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNE 183
Query: 88 AERAREGMNAKYLDGW 103
AERA + +N K G+
Sbjct: 184 AERAIQELNGKTPKGY 199
Score = 114 (45.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L+ T + L + F PFG + KVI D T + KGFGFV+ T+ +EA A + +
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 335 NGYTLGNRVLQV 346
Score = 71 (30.1 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 72 GRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107
G+S G+GFV+Y E+AE+A +N L VI V
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKV 117
Score = 63 (27.2 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 23 GSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATG 72
GS+ ++ + L V+ L + T E+++ F+ G+L K++ D+ +G
Sbjct: 15 GSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSG 64
Score = 32 (16.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 130 EMGFRTNKT 138
++ F+TNKT
Sbjct: 345 QVSFKTNKT 353
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 139 (54.0 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 90
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 91 MNARPHKVDGRVV 103
Score = 109 (43.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 110 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 169
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 170 VTFDDHDSVDK 180
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ T ++ L+ F +G++V ++ DR T +S+GF FV++ S +A+ A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MNAKYLDGWVIFVD 108
MN K LDG I V+
Sbjct: 69 MNGKSLDGKAIKVE 82
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 140 (54.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG++ + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 146 (56.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LKE F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 83
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 84 NGKELNGKQIYV 95
Score = 128 (50.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 128 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 185
Query: 96 NAK 98
N +
Sbjct: 186 NGR 188
>UNIPROTKB|G4MY51 [details] [associations]
symbol:MGG_01274 "RNA-binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001232 RefSeq:XP_003714189.1 EnsemblFungi:MGG_01274T0
GeneID:2679440 KEGG:mgr:MGG_01274 Uniprot:G4MY51
Length = 412
Score = 145 (56.1 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 31/69 (44%), Positives = 46/69 (66%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T RLFV L+ TTDE L +AF+ + + SKVI D+ T +SKG+GFVS++ ++ +A
Sbjct: 268 THLRLFVGNLAGETTDESLLKAFSRWKSVQKSKVIRDKRTNKSKGYGFVSFSDPDDFFQA 327
Query: 92 REGMNAKYL 100
+ MN KY+
Sbjct: 328 AKEMNGKYI 336
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 141 (54.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 123 LGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHA 182
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 183 NGMELDGRRIRVD 195
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 140 (54.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 33/77 (42%), Positives = 45/77 (58%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T +LFV LS T E L AF G +V ++V+ D TGRS+G+GFV Y+S E E A
Sbjct: 175 TEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETA 234
Query: 92 REGMNAKYLDGWVIFVD 108
E ++ L+G I V+
Sbjct: 235 LESLDGFELEGRAIRVN 251
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 23/71 (32%), Positives = 48/71 (67%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 178
Query: 88 AERAREGMNAK 98
AE A +G+N +
Sbjct: 179 AEEAIKGLNGQ 189
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
N+ + L V+ L + T E+LK F G++ K++ D+ TG+S G+GFV+Y ++
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 88 AERAREGMN 96
AE+A +N
Sbjct: 93 AEKAINTLN 101
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 92 CKDPNPN-IDG 101
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 146 (56.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV LS T+E L + F FG+L ++++T+R TGRS+GFG+V +T+ +A +A
Sbjct: 276 SANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAY 334
Query: 93 EGMNAKYLDGWVIFVD 108
E M +DG I +D
Sbjct: 335 EAMKEHEIDGRKINLD 350
Score = 131 (51.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 32 TSPR---LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
TSP LFV L ++ + E F P G ++ ++ TD +GR KGFG+V Y+S++EA
Sbjct: 379 TSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA 438
Query: 89 ERAREGMNAKYLDGWVIFVD 108
+A + +DG I +D
Sbjct: 439 RKAYNELQGAEIDGRPIRLD 458
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+YT++EE + A
Sbjct: 24 KLFIGGLSFETTDESLRSHFEQWGMLT-DCVVMDPNTKRSRGFGFVTYTTVEEVDAAMNA 82
Query: 95 MNAKYLDGWVI 105
K +DG V+
Sbjct: 83 RPQK-MDGRVV 92
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 99 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 158
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 159 VTFDDHDSVDK 169
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 138 (53.6 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG++ + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 138 (53.6 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG++ + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 137 (53.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 137 (53.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 137 (53.3 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 137 (53.3 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 146 (56.5 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LKE F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 187
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 188 NGKELNGKQIYV 199
Score = 128 (50.1 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 289
Query: 96 NAK 98
N +
Sbjct: 290 NGR 292
Score = 117 (46.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 94
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 95 NGMLLNDRKVFV 106
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 146 (56.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE L+E F+ FG+ + KV+ D +G+SKGFGFVSY E+A +A E M
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 96 NAKYLDGWVIFV 107
N K + G IFV
Sbjct: 181 NGKEMSGKSIFV 192
Score = 138 (53.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 282
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 283 NGRIVGSKPLYV 294
Score = 102 (41.0 bits), Expect = 0.00015, P = 0.00015
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A +A E M
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKM 87
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 88 NGMLLNDRKVFV 99
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 143 (55.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 19 KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
+ + +R T +FV DEKLKE F+ +G KVI D A+G+SKGFG
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFG 242
Query: 79 FVSYTSIEEAERAREGMNAKYLDGWVIFV 107
FV Y + E A++A ++ K ++G V++V
Sbjct: 243 FVRYETHEAAQKAVLDLHGKSINGKVLYV 271
Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ L DEKLKE F+ FG + +KV+ + G+ KGFG V ++S E+A +A + M
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVVCFSSFEDATKAVDEM 361
Query: 96 NAK 98
N +
Sbjct: 362 NGR 364
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 137 (53.3 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG++ + VITDR TG+S+G+GFV+ A+RA
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 140 (54.3 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTD+ L+E F +G L V+ D T RS+GFGFV+Y+ +EE + A
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 95 MNAKYLDGWVI 105
K +DG V+
Sbjct: 70 RPHK-VDGRVV 79
Score = 106 (42.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S++ + LT ++FV G+ T + L+E F +G++ +V+ DR +G+ +GF F
Sbjct: 86 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAF 145
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 146 VTFDDHDTVDK 156
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 138 (53.6 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 23 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 80
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 81 NGRIVGSKPLYV 92
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 146 (56.5 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE L+E F+ FG+ + KV+ D +G+SKGFGFVSY E+A +A E M
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 96 NAKYLDGWVIFV 107
N K + G IFV
Sbjct: 252 NGKEMSGKSIFV 263
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 354 NGRIVGSKPLYV 365
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A +A E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 139 (54.0 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 146 (56.5 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LKE F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 252 NGKELNGKQIYV 263
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAK 98
N +
Sbjct: 354 NGR 356
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 146 (56.5 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LKE F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 252 NGKELNGKQIYV 263
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAK 98
N +
Sbjct: 354 NGR 356
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 138 (53.6 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T R +GFGFV+YT++EE + A
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAA--- 64
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 65 MNARPHKVDGRVV 77
Score = 102 (41.0 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV + T + L+E F +G++ +++TDR +G+ +GF F
Sbjct: 84 SREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVF 143
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 144 VTFDDHDSVDK 154
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 146 (56.5 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE L+E F+ FG+ + KV+ D +G+SKGFGFVSY E+A +A E M
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 96 NAKYLDGWVIFV 107
N K + G IFV
Sbjct: 252 NGKEMSGKSIFV 263
Score = 138 (53.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 354 NGRIVGSKPLYV 365
Score = 102 (41.0 bits), Expect = 0.00018, P = 0.00018
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + E A +A E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQEAANKAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00038, P = 0.00038
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 138 (53.6 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG++ + VITDR TG+S+G+GFV+ AERA
Sbjct: 27 TYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 86
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 87 CKDPNP-IIDG 96
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 144 (55.7 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 33/73 (45%), Positives = 43/73 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
LFV LS D L E F G + ++VITDR +GRSKGFG+V + + EEAE+A
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 96 NAKYLDGWVIFVD 108
++DG I VD
Sbjct: 301 QGAFIDGREIKVD 313
Score = 108 (43.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 23/79 (29%), Positives = 47/79 (59%)
Query: 26 RYNSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYT 83
+Y T++ S LFV L ++ + F+ ++ ++ T++ +GR KGFG+V++
Sbjct: 332 KYGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFN 391
Query: 84 SIEEAERAREGMNAKYLDG 102
S+E+A+ A E +N + ++G
Sbjct: 392 SVEDAKSAFEQLNGQSING 410
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 137 (53.3 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 92 CKDPNPN-IDG 101
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 137 (53.3 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 92 CKDPNPN-IDG 101
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 141 (54.7 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
+TL LFV L L + L + F+ GQLV + + GRSKG+GFVSY S E A
Sbjct: 94 NTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETA 153
Query: 89 ERAREGMNAKYL 100
+ A E MN ++L
Sbjct: 154 DAAIEAMNNQFL 165
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 139 (54.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 181 NGMELDGRRIRVD 193
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 139 (54.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 181 NGMELDGRRIRVD 193
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 139 (54.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 181 NGMELDGRRIRVD 193
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 139 (54.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 178
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 179 NGMELDGRRIRVD 191
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 139 (54.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 181 NGMELDGRRIRVD 193
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 139 (54.0 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G L V+ D+ TGRS+GF FV + I++++ A E
Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 178
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 179 NGMELDGRRIRVD 191
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 140 (54.3 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTD+ L+E F +G L V+ D T RS+GFGFV+Y+ +EE + A
Sbjct: 22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 81
Query: 95 MNAKYLDGWVI 105
K +DG V+
Sbjct: 82 RPHK-VDGRVV 91
Score = 106 (42.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S++ + LT ++FV G+ T + L+E F +G++ +V+ DR +G+ +GF F
Sbjct: 98 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAF 157
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 158 VTFDDHDTVDK 168
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 142 (55.0 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 33/74 (44%), Positives = 47/74 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEA-FAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93
+LF+ GL+ L TDEK EA F +G++V ++ DR T +S+GF FV++ S +A+ A
Sbjct: 9 KLFIGGLN-LETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67
Query: 94 GMNAKYLDGWVIFV 107
MN K LDG I V
Sbjct: 68 DMNGKSLDGKAIKV 81
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 137 (53.3 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 136 (52.9 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 136 (52.9 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 9 TYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 69 CKDPNP-IIDG 78
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 136 (52.9 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ AERA
Sbjct: 32 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 91
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 92 CKDPNP-IIDG 101
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 139 (54.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 141 (54.7 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 19 KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
+ + +R T +FV D+KLKE F+ +G KVI D ++G+SKGFG
Sbjct: 184 EERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFG 242
Query: 79 FVSYTSIEEAERAREGMNAKYLDGWVIFV 107
FV Y + E A++A ++ K +DG V++V
Sbjct: 243 FVRYETHEAAQKAVLDLHGKSIDGKVLYV 271
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ L DEKLKE F+ FG + +KV+ + G+ KGFG + ++S EEA +A + M
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEM 361
Query: 96 NAK 98
N +
Sbjct: 362 NGR 364
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 141 (54.7 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 34/89 (38%), Positives = 49/89 (55%)
Query: 19 KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
+ + +R T +FV DEKLK+ F+ +G KVI D ATG+SKGFG
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRD-ATGKSKGFG 242
Query: 79 FVSYTSIEEAERAREGMNAKYLDGWVIFV 107
FV Y + E A++A ++ K +DG V+ V
Sbjct: 243 FVRYETHEAAQKAVLELHGKSIDGKVLCV 271
Score = 123 (48.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ L DEKLKE F+ FG + +KV+ + G+ KGFG V ++S EEA +A M
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASKAVNEM 361
Query: 96 NAKYLDGWVIFV 107
N + + + V
Sbjct: 362 NGRVVGSKTLHV 373
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 139 (54.0 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 139 (54.0 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 141 (54.7 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ T ++ L+ F +G++V +I DR T +S+GF FV++ S +A+ A
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MNAKYLDGWVIFVD 108
MN K LDG I V+
Sbjct: 69 MNGKSLDGKAIKVE 82
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 137 (53.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 95 (38.5 bits), Expect = 0.00025, P = 0.00025
Identities = 16/65 (24%), Positives = 38/65 (58%)
Query: 26 RYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
R +S + ++FV G+ T + L++ +G++ +++TDR +G+ +GF FV++
Sbjct: 92 REDSHSLTVKIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDY 151
Query: 86 EEAER 90
+ ++
Sbjct: 152 DSVDK 156
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 138 (53.6 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ T ++ L+ F +G++V ++ DR T +S+GF FV++ S +A+ A
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
Query: 95 MNAKYLDGWVIFVD 108
MN K LDG I V+
Sbjct: 71 MNGKSLDGKAIKVE 84
>DICTYBASE|DDB_G0282873 [details] [associations]
symbol:DDB_G0282873 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0282873 GO:GO:0000166
EMBL:AAFI02000047 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG313287
RefSeq:XP_639372.1 ProteinModelPortal:Q54RW5
EnsemblProtists:DDB0233751 GeneID:8623811 KEGG:ddi:DDB_G0282873
InParanoid:Q54RW5 OMA:RDRDDHD Uniprot:Q54RW5
Length = 952
Score = 146 (56.5 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++T SP L++SGL TTD++L+ F FG++V K+ + G+SKG+ FV + IE+
Sbjct: 157 DTTDLSPALYISGLEWWTTDQQLENVFLEFGKIVTLKIFENENNGKSKGYAFVEFEHIEQ 216
Query: 88 AERAREGMNAKYLDG 102
A+ A+ K ++G
Sbjct: 217 AQLAKSKTEKKEING 231
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 138 (53.6 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ T ++ L+ F +G++V ++ DR T +S+GF FV++ S +A+ A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MNAKYLDGWVIFVD 108
MN K LDG I V+
Sbjct: 69 MNGKSLDGKAIKVE 82
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 139 (54.0 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIE 86
+N L S ++ V L T+++ LK F+ FG++ K+I D A RSKG+ F+ +TS +
Sbjct: 34 FNYPLAS-KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
Query: 87 EAERAREGMNAKYLDGWVIFVD 108
+A A E M+ + +G +I++D
Sbjct: 93 DAFLAIETMDRRMYNGRMIYID 114
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
LFV+G+ T+E + + FA FG++ + DR TG KG+ V Y + +EA+ A EG+
Sbjct: 75 LFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGL 134
Query: 96 NAKYLDGWVIFVD 108
N + L G I VD
Sbjct: 135 NGQELMGQPISVD 147
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 135 (52.6 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 64
Query: 95 MNAK 98
MNA+
Sbjct: 65 MNAR 68
Score = 110 (43.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R ++ LT ++FV G+ T + L++ F +G+ +++TDR +G+ +GF F
Sbjct: 84 SREDSQRPDAYLTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAF 143
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 144 VTFDDRDSVDK 154
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 140 (54.3 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 31/71 (43%), Positives = 44/71 (61%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTD+ L+E F +G L V+ D T RS+GFGFV+Y+ +EE + A
Sbjct: 34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 93
Query: 95 MNAKYLDGWVI 105
K +DG V+
Sbjct: 94 RPHK-VDGRVV 103
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S++ + LT ++FV G+ T + L+E F +G++ +V+ DR +G+ +GF F
Sbjct: 110 SREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAF 169
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 170 VTFDDHDTVDK 180
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 143 (55.4 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 206
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 207 NGKELNGKQIYV 218
Score = 128 (50.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 308
Query: 96 NAK 98
N +
Sbjct: 309 NGR 311
Score = 117 (46.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 113
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 114 NGMLLNDRKVFV 125
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 138 (53.6 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ T ++ L+ F +G++V ++ DR T +S+GF FV++ S +A+ A
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 95 MNAKYLDGWVIFVD 108
MN K LDG I V+
Sbjct: 69 MNGKSLDGKAIKVE 82
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 143 (55.4 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 252 NGKELNGKQIYV 263
Score = 117 (46.2 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 104 (41.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++ ++ R
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSYMQRMASVR 350
Score = 99 (39.9 bits), Expect = 0.00033, P = 0.00033
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 143 (55.4 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 219
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 220 NGKELNGKQIYV 231
Score = 128 (50.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 321
Query: 96 NAK 98
N +
Sbjct: 322 NGR 324
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>FB|FBgn0011206 [details] [associations]
symbol:bol "boule" species:7227 "Drosophila melanogaster"
[GO:0007140 "male meiosis" evidence=IMP] [GO:0007283
"spermatogenesis" evidence=IMP;TAS] [GO:0048137 "spermatocyte
division" evidence=IMP] [GO:0003729 "mRNA binding"
evidence=ISS;NAS;IMP] [GO:0008315 "meiotic G2/MI transition"
evidence=IMP;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006417 "regulation of translation"
evidence=IGI] [GO:0045836 "positive regulation of meiosis"
evidence=NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043204 "perikaryon" evidence=IDA] [GO:0007476 "imaginal
disc-derived wing morphogenesis" evidence=IMP] [GO:0046331 "lateral
inhibition" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:AE014296 GO:GO:0006417 GO:GO:0000166
GO:GO:0043204 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0046331
GO:GO:0007140 GO:GO:0007476 eggNOG:NOG260394
GeneTree:ENSGT00530000063480 EMBL:U51858 EMBL:AI063811
EMBL:AY089323 PIR:S68988 RefSeq:NP_523989.1 RefSeq:NP_729456.1
RefSeq:NP_729457.1 RefSeq:NP_729458.1 UniGene:Dm.20499
ProteinModelPortal:Q24207 SMR:Q24207 DIP:DIP-20744N IntAct:Q24207
MINT:MINT-911886 STRING:Q24207 PaxDb:Q24207 PRIDE:Q24207
EnsemblMetazoa:FBtr0076538 EnsemblMetazoa:FBtr0076540 GeneID:39049
KEGG:dme:Dmel_CG4760 UCSC:CG4760-RA CTD:39049 FlyBase:FBgn0011206
InParanoid:Q24207 OMA:NVPTIWP OrthoDB:EOG4S1RQF PhylomeDB:Q24207
ChiTaRS:bol GenomeRNAi:39049 NextBio:811653 Bgee:Q24207
GermOnline:CG4760 GO:GO:0008315 GO:GO:0048137 Uniprot:Q24207
Length = 228
Score = 134 (52.2 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 18 LKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGF 77
L++ L + +Y TL R+FV G+S TT+ L F+ +G + +K+I DRA G SKG+
Sbjct: 18 LETPLAAPKYG-TLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRA-GVSKGY 75
Query: 78 GFVSYTSIEEAER 90
GFV++ + +EA+R
Sbjct: 76 GFVTFETEQEAQR 88
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 36 LFVSGLS-RLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+FV LS +TTD+ ++ AFAPFG++ ++V+ D TG+SKG+GFVS+ + +AE A
Sbjct: 117 VFVGDLSPEITTDD-IRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVH 175
Query: 95 MNAKYLDG 102
M ++L G
Sbjct: 176 MGGQWLGG 183
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 141 (54.7 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS+ ++E LK F FG++ +KVI D T +SKG+GFVS+ + + AE A GM
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 96 NAKYL 100
N K++
Sbjct: 287 NGKWI 291
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 252 NGKELNGKQIYV 263
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAK 98
N +
Sbjct: 354 NGR 356
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 252 NGKELNGKQIYV 263
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAK 98
N +
Sbjct: 354 NGR 356
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 252 NGKELNGKQIYV 263
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAK 98
N +
Sbjct: 354 NGR 356
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 252 NGKELNGKQIYV 263
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAK 98
N +
Sbjct: 354 NGR 356
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 252 NGKELNGKQIYV 263
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAK 98
N +
Sbjct: 354 NGR 356
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00036, P = 0.00036
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 143 (55.4 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 47 DEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106
D++LKE F +G+ + KV+TD TG+S+GFGFVSY E+A +A E MN L+G +F
Sbjct: 205 DQRLKELFDKYGKTLSVKVMTD-PTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVF 263
Query: 107 V 107
V
Sbjct: 264 V 264
Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 354
Query: 96 NAKYLDGWVIFV 107
N + + ++V
Sbjct: 355 NGRIVGSKPLYV 366
Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+ FV + + + A+RA E M
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYAFVHFETQDAADRAIEKM 159
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 160 NGMLLNDRKVFV 171
Score = 96 (38.9 bits), Expect = 0.00075, P = 0.00075
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 96 NAKYLDG 102
N + G
Sbjct: 74 NFDVVKG 80
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 137 (53.3 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V GLS TT+ L+E F+ +G + ++ D+ + RS+GF FV + ++E+A+ A+E
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERA 179
Query: 96 NAKYLDGWVIFVD 108
N LDG I VD
Sbjct: 180 NGMELDGRRIRVD 192
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 143 (55.4 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A + M
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEM 251
Query: 96 NAKYLDGWVIFV 107
N K L+G I+V
Sbjct: 252 NGKELNGKQIYV 263
Score = 128 (50.1 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAK 98
N +
Sbjct: 354 NGR 356
Score = 117 (46.2 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D G SKG+GFV + + E AERA E M
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEKM 158
Query: 96 NAKYLDGWVIFV 107
N L+ +FV
Sbjct: 159 NGMLLNDRKVFV 170
Score = 99 (39.9 bits), Expect = 0.00037, P = 0.00037
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 139 (54.0 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 139 (54.0 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 139 (54.0 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 71
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 72 MNARPHKVDGRVV 84
Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 150
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 151 VTFDDHDSVDK 161
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 135 (52.6 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93
P +++ DE+LK+ F FG + KV+TD + G+SKGFGFVS+ E+A++A +
Sbjct: 191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 94 GMNAK 98
MN K
Sbjct: 250 EMNGK 254
Score = 110 (43.8 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L + ++ L + + FG ++ V+ D G SKG+GFV + + E AERA + M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE-NG-SKGYGFVHFETHEAAERAIKKM 158
Query: 96 NAKYLDGWVIFV 107
N L+G +FV
Sbjct: 159 NGMLLNGRKVFV 170
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 143 (55.4 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 23 GSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSY 82
G R NS T LFV GLS TTD+ LK++F G + +++ TDR TG SKGFGFV +
Sbjct: 547 GGGRGNSGPTKT-LFVKGLSDDTTDQTLKDSFD--GAIA-ARIATDRDTGSSKGFGFVDF 602
Query: 83 TSIEEAERAREGMNAKYLDGWVIFVD 108
+ ++ + A+E M+ +DG + +D
Sbjct: 603 DNEQDCKAAKEAMDDGEIDGNKVTLD 628
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 139 (54.0 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 92
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 93 MNARPHKVDGRVV 105
Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/71 (28%), Positives = 42/71 (59%)
Query: 20 SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGF 79
S+ S R + LT ++FV G+ T + L++ F +G++ +++TDR +G+ +GF F
Sbjct: 112 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 171
Query: 80 VSYTSIEEAER 90
V++ + ++
Sbjct: 172 VTFDDHDSVDK 182
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 138 (53.6 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 24/75 (32%), Positives = 49/75 (65%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 124 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 183
Query: 88 AERAREGMNAKYLDG 102
AE A +G+N + G
Sbjct: 184 AEEAIKGLNGQKPSG 198
Score = 108 (43.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS + + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 330 NGYRLGDRVLQV 341
Score = 107 (42.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T E+ + F G++ K++ D+ TG+S G+GFV+Y ++AE+A +
Sbjct: 46 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 105
Query: 96 N 96
N
Sbjct: 106 N 106
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 142 (55.0 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L TDEKL+E FA FG + KV+ D +G SKG GFV++++ EA R M
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 96 NAKYLDGWVIFV 107
N K + G ++V
Sbjct: 389 NGKMVGGKPLYV 400
Score = 126 (49.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++V LS TTD++LK F +G + + V+ D G+S+ FGFV++ + E+A RA E +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 96 NAKYLDG--WVI 105
N K D W +
Sbjct: 286 NGKKFDDKEWYV 297
Score = 126 (49.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 18 LKSQLGSIRYNSTLTSPR------LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRAT 71
L ++ I Y+S +S R LFV L + ++ L EAF+ G +V KV TD
Sbjct: 112 LNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM- 170
Query: 72 GRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107
G+S+G+GFV + + + A+ A E +N K L+ IFV
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 123 (48.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L TD +L + F Q+V +V D AT S G+G+V+Y++ ++AE+A + +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 96 NAKYLDGWVI 105
N YL+G +I
Sbjct: 108 NYSYLNGKMI 117
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 138 (53.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 24/75 (32%), Positives = 49/75 (65%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185
Query: 88 AERAREGMNAKYLDG 102
AE A +G+N + G
Sbjct: 186 AEEAIKGLNGQKPSG 200
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS + + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 345 NGYRLGDRVLQV 356
Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T E+ + F G++ K++ D+ TG+S G+GFV+Y ++AE+A +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 96 N 96
N
Sbjct: 108 N 108
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 138 (53.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 24/75 (32%), Positives = 49/75 (65%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185
Query: 88 AERAREGMNAKYLDG 102
AE A +G+N + G
Sbjct: 186 AEEAIKGLNGQKPSG 200
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS + + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 345 NGYRLGDRVLQV 356
Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T E+ + F G++ K++ D+ TG+S G+GFV+Y ++AE+A +
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 96 N 96
N
Sbjct: 108 N 108
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 137 (53.3 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
+ T+ L++SGL R T + +++ F PFG ++ S+V+ D+ATG S+G F+ + E
Sbjct: 100 SETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSE 159
Query: 88 AERAREGMN 96
AE A N
Sbjct: 160 AEEAIASFN 168
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T ++L+ F+ G++ +K+I D+ G S G+GFV+Y + ++AERA +
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 96 NAKYLDGWVIFV 107
N L I V
Sbjct: 82 NGLRLQSKTIKV 93
Score = 111 (44.1 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 20 SQLGSIRYNSTLTSPR-LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
S + S+ S+ +S +F+ L + + L + F PFG + KVI D T + KGFG
Sbjct: 229 SSISSVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Query: 79 FVSYTSIEEAERAREGMN 96
FV+ T+ EEA A +N
Sbjct: 289 FVTMTNYEEAAMAIASLN 306
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 138 (53.6 bits), Expect = 9.6e-09, P = 9.6e-09
Identities = 24/75 (32%), Positives = 49/75 (65%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 131 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 190
Query: 88 AERAREGMNAKYLDG 102
AE A +G+N + G
Sbjct: 191 AEEAIKGLNGQKPSG 205
Score = 108 (43.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS + + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 350 NGYRLGDRVLQV 361
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T E+ + F G++ K++ D+ TG+S G+GFV+Y ++AE+A +
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 96 N 96
N
Sbjct: 113 N 113
>UNIPROTKB|E2REM2 [details] [associations]
symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
Length = 207
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GLS TTDE L+ F +G L V+ D T RS+GFGFV+Y ++EE + A
Sbjct: 15 KLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAA--- 70
Query: 95 MNAK--YLDGWVI 105
MNA+ +DG V+
Sbjct: 71 MNARPHKVDGRVV 83
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 138 (53.6 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 24/75 (32%), Positives = 49/75 (65%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 178
Query: 88 AERAREGMNAKYLDG 102
AE A +G+N + G
Sbjct: 179 AEEAIKGLNGQKPSG 193
Score = 108 (43.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS + + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 352 NGYRLGDRVLQV 363
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T E+ + F G++ K++ D+ TG+S G+GFV+Y ++AE+A +
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 N 96
N
Sbjct: 101 N 101
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 138 (53.6 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 24/75 (32%), Positives = 49/75 (65%)
Query: 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEE 87
++++ L+VSGL + T ++L++ F+ +G+++ S+++ D+ TG S+G GF+ + E
Sbjct: 119 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 178
Query: 88 AERAREGMNAKYLDG 102
AE A +G+N + G
Sbjct: 179 AEEAIKGLNGQKPSG 193
Score = 108 (43.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV LS + + L + F PFG + KVI D T + KGFGFV+ T+ +EA A +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 96 NAKYLDGWVIFV 107
N L V+ V
Sbjct: 352 NGYRLGDRVLQV 363
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L V+ L + T E+ + F G++ K++ D+ TG+S G+GFV+Y ++AE+A +
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 96 N 96
N
Sbjct: 101 N 101
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 133 (51.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ A+RA
Sbjct: 30 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRA 89
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 90 CKDPNP-IIDG 99
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 133 (51.9 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
T ++FV GL TTD L++ F FG + + VITDR TG+S+G+GFV+ A+RA
Sbjct: 30 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRA 89
Query: 92 REGMNAKYLDG 102
+ N +DG
Sbjct: 90 CKDPNP-IIDG 99
WARNING: HSPs involving 1072 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 143 107 0.00091 102 3 11 22 0.43 30
29 0.40 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1322
No. of states in DFA: 513 (55 KB)
Total size of DFA: 99 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.37u 0.11s 10.48t Elapsed: 00:00:01
Total cpu time: 10.39u 0.11s 10.50t Elapsed: 00:00:01
Start: Sat May 11 01:20:00 2013 End: Sat May 11 01:20:01 2013
WARNINGS ISSUED: 2