BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032319
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 9/122 (7%)
Query: 1 MAFASSF----RRALSSGSSI-LKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFA 55
MAF + R+ +SS ++ + S LGS+R L S +LF+ GLS T D L++AFA
Sbjct: 1 MAFCNKLGGLLRQNISSNGNVPVTSMLGSLR----LMSTKLFIGGLSWGTDDASLRDAFA 56
Query: 56 PFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREA 115
FG +V +KVI DR TGRS+GFGFV++ A A M+ K L+G I V+PA R +
Sbjct: 57 HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
Query: 116 RP 117
P
Sbjct: 117 AP 118
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 65/104 (62%), Gaps = 7/104 (6%)
Query: 9 RALSSGSSILKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITD 68
RAL + +++L+ L +LT ++FV GLS T E LKEAF FG++V + V+ D
Sbjct: 18 RALQASNAMLQGNL-------SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLD 70
Query: 69 RATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKS 112
R +G S+GFGFV+Y SIE A A + M K LDG +I V PA S
Sbjct: 71 RESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPADS 114
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 56/78 (71%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL+ T +E L++AFA FGQ++ SKVITDR TGRS+GFGFV+++S + A E
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 95 MNAKYLDGWVIFVDPAKS 112
MN K LDG I V+ A+S
Sbjct: 69 MNGKELDGRNITVNQAQS 86
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 9/122 (7%)
Query: 1 MAFASSFRRALSSGSSI-----LKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFA 55
MAF + L G S + S LGS+RY S +LFV GLS T D LK+AF
Sbjct: 1 MAFCNKLSGILRQGVSQSSNGPVTSMLGSLRY----MSSKLFVGGLSWGTDDSSLKQAFT 56
Query: 56 PFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREA 115
FG++ + VI DR TGRS+GFGFVS++ + A A + M+ K L+G I V+ A R +
Sbjct: 57 SFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSS 116
Query: 116 RP 117
P
Sbjct: 117 AP 118
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 54/79 (68%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL T D+ L+ AF+ +G ++ SK+ITDR TGRS+GFGFV++ S E +A E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 95 MNAKYLDGWVIFVDPAKSR 113
MN + LDG I V+ A+SR
Sbjct: 67 MNGQDLDGRNITVNEAQSR 85
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 55/78 (70%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL+ T++E L+ AFA +G+++ SKVITDR TGRS+GFGFV+++S A E
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 95 MNAKYLDGWVIFVDPAKS 112
MN K LDG I V+ A+S
Sbjct: 69 MNGKELDGRNITVNQAQS 86
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 52/78 (66%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL+ T DE L++AF+ FG + SK+I DR TGRS+GFGFV++ + A EG
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 95 MNAKYLDGWVIFVDPAKS 112
MN + LDG I V+ A+S
Sbjct: 67 MNGQELDGRNITVNEAQS 84
>sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana
GN=RPS19 PE=1 SV=2
Length = 212
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 1 MAFASSFRRALSSGSSI-LKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQ 59
MAF + G ++ + S LGS+RY ST +L++ GLS T + LK+AF+ F
Sbjct: 1 MAFCTKLGGHWKQGVNVPVSSMLGSLRYMST----KLYIGGLSPGTDEHSLKDAFSSFNG 56
Query: 60 LVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111
+ ++V+T++ TGRS+G+GFV++ S + A A MN + L+G+ I V+ AK
Sbjct: 57 VTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
Query: 1 MAFASSFRRALSSGSSIL---KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPF 57
MAF S R S SS + S L SIR ++S ++FV G+S T + L+EAF+ +
Sbjct: 1 MAFLSKVGRLFSQTSSHVTASSSMLQSIR---CMSSSKIFVGGISYSTDEFGLREAFSKY 57
Query: 58 GQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110
G++V +K+I DR TGRS+GF FV++TS EEA A + ++ + L G I V+ A
Sbjct: 58 GEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL+ T + L+ AF+ FG+LV SK+I DR TGRS+GFGFV++ + + A EG
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 95 MNAKYLDGWVIFVDPAK 111
MN + LDG I V+ A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL+ T DE L+ F+ FG ++ SK+I DR +GRS+GFGFV++ + A E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 95 MNAKYLDGWVIFVDPAK 111
MN K LDG VI V+ A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 57/84 (67%)
Query: 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAE 89
++S +LF+ G++ ++ L+EAF +G++V ++VI DR TGRS+GFGFV++TS E A
Sbjct: 36 CMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAAS 95
Query: 90 RAREGMNAKYLDGWVIFVDPAKSR 113
A + ++ + L G V+ V+ A R
Sbjct: 96 SAIQALDGRDLHGRVVKVNYANDR 119
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL+ T D L+ AFA +G ++ SK+I DR TGRS+GFGFV++ + + A EG
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 95 MNAKYLDGWVIFVDPAK 111
MN + LDG I V+ A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL+ T D L+ AF+ +G+++ SK+I DR TGRS+GFGFV++ + + A EG
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 95 MNAKYLDGWVIFVDPAK 111
MN + LDG I V+ A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R FV GL+ T D +L+ F+ FG+++ SK+I DR TGRS+GFGFV++ + + A +
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 95 MNAKYLDGWVIFVDPAKS 112
MN K LDG I V+ A+S
Sbjct: 67 MNGKELDGRTITVNEAQS 84
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVDPA-KSREARP 117
MN K +DG I VD A KS + R
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRS 90
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVDPA-KSREARP 117
MN K +DG I VD A KS + R
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRS 90
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAE 89
+ +LFV GLS T ++ L+ F+ +GQ+ V+ DR T RS+GFGFV++ + E+A+
Sbjct: 2 SCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAK 61
Query: 90 RAREGMNAKYLDGWVIFVDPA 110
A GMN K +DG I VD A
Sbjct: 62 DAMAGMNGKTVDGRQIRVDQA 82
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVDPA-KSREARP 117
MN K +DG I VD A KS + R
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRS 90
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVDPA-KSREARP 117
MN K +DG I VD A KS + R
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRS 90
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV GLS T ++ L++ F+ +GQ+ V+ DR T RS+GFGFV++ +I++A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 95 MNAKYLDGWVIFVDPA-KSREARP 117
MN K +DG I VD A KS + R
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRS 90
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 18 LKSQLGSIRYN--STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSK 75
LK Q ++R S LFV L EKL+E F PFG + SKV+ D A G+SK
Sbjct: 333 LKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDA-GKSK 391
Query: 76 GFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREAR 116
GFGFV +++ EEA +A MN + ++G ++V A+ ++ R
Sbjct: 392 GFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVR 432
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 19 KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
+S+L ++ N T ++V + T+++ +E FAPFG++ S + A G+SKGFG
Sbjct: 237 ESKLEEMKANYT----NIYVKNIDLAYTEKEFEELFAPFGKIT-SIYLEKDAEGKSKGFG 291
Query: 79 FVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREAR 116
FV++ E A +A E +N K ++G I+V A+ + R
Sbjct: 292 FVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRER 329
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+F+ L ++ L + F+ FG+++ KV TD G+SK FGFV Y + E A+ A E
Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIES 214
Query: 95 MNAKYLDGWVIFVDPAKSREAR 116
+N L+ ++V S++ R
Sbjct: 215 VNGMLLNDREVYVGKHVSKKDR 236
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
S L+V L+ + L E F+P GQ+ +V D + +S G+ +V+Y +E+ E+A
Sbjct: 65 NSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKA 124
Query: 92 REGMNAKYLDG 102
E +N ++G
Sbjct: 125 IEELNYTPVEG 135
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 18 LKSQLGSIRYN--STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSK 75
LK Q ++R + LFV L EKL+E F PFG + +KV+ D A G+SK
Sbjct: 318 LKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEA-GKSK 376
Query: 76 GFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREAR 116
GFGFV +T+ EEA +A MN + ++G ++V A+ ++ R
Sbjct: 377 GFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVR 417
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++V + ++E ++ F+PFG++ + D+ G+SKGFGFV++ E A +A E +
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N K ++G I+V A+ + R
Sbjct: 294 NDKEINGQKIYVGRAQKKRER 314
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L ++ L + F+ FG+++ KV TD G+SK FGFV Y + E AE A E +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDE-FGQSKCFGFVHYETAEAAEAAIENV 200
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N L+ +FV S++ R
Sbjct: 201 NGMLLNDREVFVGKHISKKDR 221
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
S L+V L+ + L E F+P GQ+ +V D + +S G+ +V+Y E+ E+A
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 92 REGMNAKYLDG 102
E +N ++G
Sbjct: 110 IEELNYNPIEG 120
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 47 DEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106
DE+LK+ F+ +G+ + KV+TD ++G+SKGFGFVS+ S E A++A E MN + ++G +IF
Sbjct: 203 DERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIF 261
Query: 107 VDPAKSREARPPPPPPYPEQQPSE 130
V A+ + R EQ E
Sbjct: 262 VGRAQKKVERQAELKQMFEQLKRE 285
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L E F+ FG+++ SKV++D SKG+ FV + + A+RA E M
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 96 NAKYLDGWVIFVDPAKSREARPPP 119
N K L G +FV K+R+ R
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAE 181
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+L++ L DEKL+ F+ FG + KV+ + G+SKGFG + ++S E+A +A
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 351
Query: 95 MNAKYL 100
MN + L
Sbjct: 352 MNGRIL 357
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
LF+ L DE+LK F+ FG + +K++TD G+SKGFGFV YT+ EEA +A
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDE-QGKSKGFGFVCYTTPEEANKAVTE 423
Query: 95 MNAKYLDGWVIFVDPAKSREAR 116
MN + L G ++V A+ +E R
Sbjct: 424 MNQRMLAGKPLYVALAQRKEVR 445
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+F+ L ++ L + F+ FG+++ KV D G +KG+GFV + S+E A A E
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEH 227
Query: 95 MNAKYLDGWVIFVDPAKSREAR 116
+N L+ ++V SR R
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRER 249
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 19 KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
+S++ +++ N T +++ L T+++ + F FG++ ++ D+ + +GFG
Sbjct: 250 QSKVEALKANFT----NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFG 304
Query: 79 FVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREAR 116
FV+Y + E A++A + +N K G ++V A+ + R
Sbjct: 305 FVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAE 89
+ +LFV GL+ TT+E L++ F+ +GQ+ V+ DR + RS+GFGFV++ + E+A+
Sbjct: 2 SCDEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAK 61
Query: 90 RAREGMNAKYLDGWVIFVDPA 110
A MN K +DG I VD A
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA 82
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 568 SKTLFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 624
Query: 93 EGMNAKYLDGWVIFVDPAKSR 113
E M +DG + +D AK +
Sbjct: 625 EAMEDGEIDGNKVTLDWAKPK 645
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S L +S LS T E L+E F + + KV + G+ KG+ F+ + S E+A+ A
Sbjct: 486 SKTLVLSNLSYSATKETLEEVFE---KATFIKVPQN-PHGKPKGYAFIEFASFEDAKEAL 541
Query: 93 EGMNAKYLDGWVIFVD 108
N ++G I ++
Sbjct: 542 NSCNKMEIEGRTIRLE 557
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 20/108 (18%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L LS T+++LKE F ++ V D G+SKG ++ + S +AE+ E
Sbjct: 397 LLAKNLSFNITEDELKEVFEDAMEIRL--VSQD---GKSKGIAYIEFKSEADAEKNLEEK 451
Query: 96 NAKYLDGWVIFVDPAKSREARPPPPPPYPEQQPSEMGFRTNKTVGWSG 143
+DG + + Y + + RT KT WSG
Sbjct: 452 QGAEIDGRSVSL---------------YYTGEKGQRQERTGKTSTWSG 484
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 571 SKTLFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 627
Query: 93 EGMNAKYLDGWVIFVDPAKSR 113
E M +DG + +D AK +
Sbjct: 628 EAMEDGEIDGNKVTLDWAKPK 648
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 478 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-QGKSKGYAFIEFASF 533
Query: 86 EEAERAREGMNAKYLDGWVIFVDPAKSREARPPPPPPYPEQQPSEMGF 133
E+A+ A N ++G I + E + P P QPS+ F
Sbjct: 534 EDAKEALNSCNKMEIEGRTIRL------ELQGPRGSPNARSQPSKTLF 575
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 8 RRALSSGSSILKSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFA-PFGQLVYSKVI 66
++ ++ + +++ + + + T LF+ L+ + +LK A + PF + + +
Sbjct: 282 KKEMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLA--V 339
Query: 67 TDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREAR 116
D TG ++ FG+V + S E+ E+A E K G I ++ K R+++
Sbjct: 340 VDVRTGTNRKFGYVDFESAEDLEKALELTGLKVF-GNEIKLEKPKGRDSK 388
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 574 SKTLFVKGLSEDTTEETLKESFE---GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 630
Query: 93 EGMNAKYLDGWVIFVDPAKSR 113
E M +DG + +D AK +
Sbjct: 631 EAMEDGEIDGNKVTLDWAKPK 651
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV + G+SKG+ F+ + S
Sbjct: 481 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQN-PHGKSKGYAFIEFASF 536
Query: 86 EEAERAREGMNAKYLDGWVIFVDPAKSREARPPPPPPYPEQQPSEMGF 133
E+A+ A N ++G I + E + P P QPS+ F
Sbjct: 537 EDAKEALNSCNKMEIEGRTIRL------ELQGPRGSPNARSQPSKTLF 578
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L LS T+++LKE F V ++++ GRSKG ++ + S +AE+ E
Sbjct: 399 LLAKNLSFNITEDELKEVFE---DAVEIRLVSQ--DGRSKGIAYIEFKSEADAEKNLEEK 453
Query: 96 NAKYLDGWVI 105
+DG +
Sbjct: 454 QGAEIDGRSV 463
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 573 SKTLFVKGLSEDTTEETLKESF---DGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 629
Query: 93 EGMNAKYLDGWVIFVDPAKSR 113
E M +DG + +D AK +
Sbjct: 630 EAMEDGEIDGNKVTLDWAKPK 650
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 480 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASF 535
Query: 86 EEAERAREGMNAKYLDGWVIFVDPAKSREARPPPPPPYPEQQPSEMGF 133
E+A+ A N + ++G I + E + P P QPS+ F
Sbjct: 536 EDAKEALNSCNKREIEGRAIRL------ELQGPRGSPNARSQPSKTLF 577
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 571 SKTLFVKGLSEDTTEETLKESF---DGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 627
Query: 93 EGMNAKYLDGWVIFVDPAKSR 113
E M +DG + +D AK +
Sbjct: 628 EAMEDGEIDGNKVTLDWAKPK 648
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 478 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASF 533
Query: 86 EEAERAREGMNAKYLDGWVIFVDPAKSREARPPPPPPYPEQQPSEMGF 133
E+A+ A N + ++G I + E + P P QPS+ F
Sbjct: 534 EDAKEALNSCNKREIEGRAIRL------ELQGPRGSPNARSQPSKTLF 575
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E LKE+F V ++++TDR TG SKGFGFV + S E+A+ A+
Sbjct: 572 SKTLFVKGLSEDTTEETLKESF---DGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAK 628
Query: 93 EGMNAKYLDGWVIFVDPAKSR 113
E M +DG + +D AK +
Sbjct: 629 EAMEDGEIDGNKVTLDWAKPK 649
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 28 NSTLT--SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85
NST + S L +S LS T+E L+E F + + KV ++ G+SKG+ F+ + S
Sbjct: 479 NSTWSGESKTLVLSNLSYSATEETLQEVFE---KATFIKVPQNQ-NGKSKGYAFIEFASF 534
Query: 86 EEAERAREGMNAKYLDGWVIFVDPAKSREARPPPPPPYPEQQPSEMGF 133
E+A+ A N + ++G I + E + P P QPS+ F
Sbjct: 535 EDAKEALNSCNKREIEGRAIRL------ELQGPRGSPNARSQPSKTLF 576
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
S +S R++V LS D LKE F+ G +V +KV+ DR +GRS+GFGFV+Y+S +E
Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEV 262
Query: 89 ERAREGMNAKYLDGWVIFVDPAKSR 113
A + +N LDG I V A+ R
Sbjct: 263 NDAIDSLNGIDLDGRSIRVSAAEER 287
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV L L F G + +VI D+ +GRS+GFGFV+ ++ EE E A +
Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148
Query: 95 MNAKYLDGWVIFVD----PAK 111
N +DG I V+ PAK
Sbjct: 149 FNGYEIDGRAIRVNAGPAPAK 169
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A +
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 95 MNAKYLDGWVIFVDPAKSREARPPPPP 121
M ++L G I + A R PP P
Sbjct: 167 MGGQWLGGRQIRTNWA----TRKPPAP 189
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ FV + S E A A +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSV 269
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 270 NGTTIEGHVV 279
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
LFV L DEKLKE FAPFG + +KV+ D TG S+GFGFV +++ EEA +A
Sbjct: 324 LFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDE-TGNSRGFGFVCFSTPEEATKAITEK 382
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N + + G ++V A+ +E R
Sbjct: 383 NQQIVAGKPLYVAIAQRKEVR 403
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S +++ L ++ L E F+ FG ++ KV TD G S+GFGFV + + +A A
Sbjct: 125 SGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAI 183
Query: 93 EGMNAKYLDGWVIFVDPAKSREAR 116
E ++ ++ ++V S++ R
Sbjct: 184 EAVDGMLMNDQEVYVALHVSKKDR 207
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++V + + T+ E+ +E F +G++ S V+ + G+ +GFGFV++ A +A + +
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKIT-SAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDEL 279
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N G ++V A+ + R
Sbjct: 280 NELEFKGQKLYVGRAQKKYER 300
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L ++ L + F+P G + +V D T S G+ +V++ E +A E +
Sbjct: 40 LYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQL 99
Query: 96 NAKYLDG 102
N + G
Sbjct: 100 NYTLIKG 106
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A +
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 95 MNAKYLDGWVIFVDPAKSREARPPPPP 121
M ++L G I + A R PP P
Sbjct: 167 MGGQWLGGRQIRTNWA----TRKPPAP 189
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ T++ +++ F+PFGQ++ +V D KG+ FV ++S E A A +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSV 269
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 270 NGTTIEGHVV 279
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%)
Query: 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEA 88
S +S R++V LS D LKE F+ G +V +KV+ DR +GRS+GFGFV+Y+S +E
Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEV 261
Query: 89 ERAREGMNAKYLDGWVIFVDPAKSREAR 116
A + +N LDG I V A+ R R
Sbjct: 262 NDAIDSLNGVDLDGRSIRVSAAEERPRR 289
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LFV L L F G + +VI D+ TGRS+GFGFV+ ++ EE E A +
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147
Query: 95 MNAKYLDGWVIFVD----PAK 111
N +DG I V+ PAK
Sbjct: 148 FNGYEIDGRAIRVNAGPAPAK 168
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92
S LFV GLS TT+E L+E+F + ++++TDR TG SKGFGFV ++S E+A+ A+
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAK 608
Query: 93 EGMNAKYLDGWVIFVDPAKSR 113
E M +DG + +D AK +
Sbjct: 609 EAMEDGEIDGNKVTLDFAKPK 629
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 19 KSQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFG 78
KSQ S + S L V+ LS ++E L+E F + S + GR KG+
Sbjct: 446 KSQQESQKGGGERESKTLIVNNLSYAASEETLQELF----KKATSIKMPQNNQGRPKGYA 501
Query: 79 FVSYTSIEEAERAREGMNAKYLDGWVIFVD 108
FV + + E+A+ A N ++G I ++
Sbjct: 502 FVEFPTAEDAKEALNSCNNTEIEGRAIRLE 531
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 51/76 (67%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ T ++ L++AF +G++ V+ DR T RS+GFGFV++ ++++A+ A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 95 MNAKYLDGWVIFVDPA 110
MN K +DG I VD A
Sbjct: 66 MNGKSVDGRQIRVDQA 81
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R++V L+ + L+ F+ G++V +KV+ DR +GRS+GFGFV+Y+S EE A E
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 95 MNAKYLDGWVIFVDPAKSREARPP 118
++ L+G I V PA EARPP
Sbjct: 255 LDGVDLNGRAIRVSPA---EARPP 275
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
++FV L L E F G + +VI D+ TGRS+GFGFV+ +S EE E A +
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 95 MNAKYLDGWVIFVDPAKSREARPPPPPPYPEQQPSEMGFRTN 136
N LDG + V+ PPP + S FR N
Sbjct: 148 FNGYELDGRALRVNSG---------PPPEKRENSS---FREN 177
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
R++V L+ + L+ F+ G++V +KV+ DR +GRS+GFGFV+Y+S EE A E
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 95 MNAKYLDGWVIFVDPAKSREARPP 118
++ L+G I V PA EARPP
Sbjct: 249 LDGVDLNGRAIRVSPA---EARPP 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
++FV L L E F G + +VI D+ TGRS+GFGFV+ +S EE E A +
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 95 MNAKYLDGWVIFVDPAKSREARPPP 119
N LDG + V+ PPP
Sbjct: 148 FNGYELDGRALRVNSG------PPP 166
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157
Query: 95 MNAKYLDGWVIFVDPAKSREARPPPPPPYPEQQPSEMGFR 134
M ++L G I + A +PP P E ++ F
Sbjct: 158 MGGQWLGGRQIRTNWATR---KPPAPKSTQENNTKQLRFE 194
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A A +
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 260
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 261 NGTTIEGHVV 270
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ DE LKE F+ FG+ + KV+ D G+SKGFGFVSY E+A +A E M
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N K + G +IFV A+ + R
Sbjct: 252 NGKEISGKIIFVGRAQKKVER 272
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L DEKL++ F+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N + + ++V A+ +E R
Sbjct: 354 NGRIVGSKPLYVALAQRKEER 374
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L + ++ L + F+ FG ++ KV+ D SKG+ FV + + E A++A E M
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N L+ +FV KSR+ R
Sbjct: 159 NGMLLNDRKVFVGRFKSRKER 179
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ +V D T RS G+ +V++ +AERA + M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 96 NAKYLDGWVIFV 107
N + G I +
Sbjct: 73 NFDVIKGKPIRI 84
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+LF+ GL+ T +E L++ F+ +GQ+ V+ DR T RS+GFGFV++ + ++A+ A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 95 MNAKYLDGWVIFVDPA 110
MN K +DG I VD A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
+FV LS T E +K AFAPFG++ ++V+ D ATG+SKG+GFVS+ + +AE A
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 95 MNAKYLDGWVIFVDPAKSREARPPPPP 121
M ++L G I + A R PP P
Sbjct: 175 MGGQWLGGRQIRTNWA----TRKPPAP 197
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++ G++ TD+ +++ F+PFGQ++ +V + KG+ FV +++ E A A +
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 277
Query: 96 NAKYLDGWVI 105
N ++G V+
Sbjct: 278 NGTTIEGHVV 287
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94
RL+V LS D L+ F G++V ++VI DR +GRSKGFGFV+ +S +E ++A
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 95 MNAKYLDGWVIFVDPAKSREARPP 118
+N LDG I V A EARPP
Sbjct: 318 LNGADLDGRQIRVSEA---EARPP 338
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 25 IRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTS 84
+ NS +LFV LS +L + F G + +VI D+ TGRS+GFGFV+ ++
Sbjct: 90 VERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Query: 85 IEEAERAREGMNAKYLDGWVIFVDPAKSREARPPPP 120
E E A + N +G + V+ A PPPP
Sbjct: 150 AAEVEAAAQQFNGYEFEGRPLRVN------AGPPPP 179
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93
P +++ DE+LK+ F FG + KV+TD +G+SKGFGFVS+ E+A++A +
Sbjct: 191 PNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVD 249
Query: 94 GMNAKYLDGWVIFVDPAKSREAR 116
MN K L+G I+V A+ + R
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVER 272
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L DE+L++AF+PFG + +KV+ + GRSKGFGFV ++S EEA +A M
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N + + ++V A+ +E R
Sbjct: 354 NGRIVATKPLYVALAQRKEER 374
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+FV L + ++ L + + FG ++ V+ D SKG+GFV + + E AERA + M
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N L+G +FV KSR+ R
Sbjct: 159 NGMLLNGRKVFVGQFKSRKER 179
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F+P G ++ ++ D T S + +V++ ++AE A + M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 96 NAKYLDG 102
N + G
Sbjct: 73 NFDVIKG 79
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
LFV L EKL+E F PFG + ++V+ D A G+SKGFGFV ++S EEA +A M
Sbjct: 344 LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDA-GKSKGFGFVCFSSPEEATKAITEM 402
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N + + G ++V A+ ++ R
Sbjct: 403 NQRMIQGKPLYVALAQRKDVR 423
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
++V L+ + K +E F PFG + + TD+ G+S+GFGFV++ + E A A + M
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEM 299
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N K +DG ++V A+ + R
Sbjct: 300 NDKEIDGQKLYVGRAQKKRER 320
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L ++ L + F+ FG+++ KV TD G+SK FGFV Y + E AE A E +
Sbjct: 148 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATDE-LGQSKCFGFVHYETAEAAEAAIENV 206
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N L+ +FV S+ R
Sbjct: 207 NGMLLNDREVFVGKHVSKRDR 227
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L+ + L E F+P GQ+ +V D T +S G+ +V++ + RA E +
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 96 NAKYLDG 102
N +DG
Sbjct: 120 NYSLVDG 126
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 18 LKSQLGSIRYN--STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSK 75
LK Q + R S LF+ L EKL+E F PFG + ++V+ D TG+SK
Sbjct: 317 LKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDE-TGKSK 375
Query: 76 GFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREAR 116
GFGFV ++S EEA +A MN + + G ++V A+ ++ R
Sbjct: 376 GFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVR 416
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91
TS L+V L+ + L E F+P GQ+ +V D T +S G+ +V++ E+ E+A
Sbjct: 49 TSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKA 108
Query: 92 REGMNAKYLDG 102
E +N ++G
Sbjct: 109 IEDLNYSLIEG 119
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 46 TDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105
++E+ K+ F +G++ + D G+SKGFGFV++ + E A +A + +N K ++G I
Sbjct: 244 SEEEFKKLFEAYGKITSIYLEKDH-EGKSKGFGFVNFENHESAVKAVDELNDKEINGQKI 302
Query: 106 FVDPAKSREAR 116
+V A+ + R
Sbjct: 303 YVGRAQKKRER 313
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L ++ L + F FG+++ KV TD G SK FGFV Y + E AE A E +
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATDD-MGISKCFGFVHYETAEAAEAAIENV 199
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N L+ ++V S++ R
Sbjct: 200 NGMLLNDREVYVGKHISKKDR 220
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L++ L D+KL+ FAP G + +KV+ D A G+SKGFGFV Y+S EEA +A M
Sbjct: 332 LYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEA-GKSKGFGFVCYSSPEEATKAVTEM 390
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
N + + G ++V A+ ++ R
Sbjct: 391 NHRLVAGKPLYVVLAQRKDVR 411
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+++ L ++ L + F+ FGQ++ K+ TD G S+GFGFV Y S E AE A + +
Sbjct: 136 IYIKNLDPAIDNKALHDTFSAFGQILSCKIATDE-FGNSRGFGFVHYESAESAESAIQHV 194
Query: 96 NAKYLDGWVIFVDP 109
N L+ +FV P
Sbjct: 195 NGMLLNDKKVFVGP 208
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
L+V L T+ L E F P G + +V D T RS G+ +V++ + + RA E +
Sbjct: 48 LYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEEL 107
Query: 96 N 96
N
Sbjct: 108 N 108
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95
+F+ L T+ + +E FG+ S ++ G+ GFGFV Y + A +A +G+
Sbjct: 229 VFIKNLGTEITEAEFEELVNKFGE-TSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGL 287
Query: 96 NAKYLDGWVIFVDPAKSREAR 116
+ G +F AK + R
Sbjct: 288 SETEFKGNKLFAGRAKKKYER 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,579,862
Number of Sequences: 539616
Number of extensions: 2241950
Number of successful extensions: 23394
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 21110
Number of HSP's gapped (non-prelim): 2088
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)