Query 032319
Match_columns 143
No_of_seqs 105 out of 1490
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 12:32:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 7.8E-20 1.7E-24 122.1 16.7 113 2-114 2-115 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.2E-17 9.2E-22 123.0 12.9 84 31-114 267-350 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.4E-17 1.4E-21 122.0 11.2 83 32-114 2-84 (352)
4 PF00076 RRM_1: RNA recognitio 99.7 1.2E-16 2.7E-21 93.5 9.5 70 36-106 1-70 (70)
5 TIGR01659 sex-lethal sex-letha 99.7 1E-16 2.3E-21 120.6 11.4 85 28-112 102-186 (346)
6 KOG0121 Nuclear cap-binding pr 99.7 1.7E-16 3.7E-21 101.4 6.8 83 30-112 33-115 (153)
7 KOG0149 Predicted RNA-binding 99.7 6E-16 1.3E-20 108.1 9.1 81 31-112 10-90 (247)
8 TIGR01659 sex-lethal sex-letha 99.7 4.5E-15 9.7E-20 111.8 14.0 83 31-113 191-275 (346)
9 KOG0122 Translation initiation 99.6 1.6E-15 3.4E-20 106.5 9.7 84 30-113 186-269 (270)
10 PF14259 RRM_6: RNA recognitio 99.6 4.7E-15 1E-19 87.2 9.9 70 36-106 1-70 (70)
11 PLN03120 nucleic acid binding 99.6 7.6E-15 1.7E-19 105.2 11.6 77 33-113 4-80 (260)
12 TIGR01645 half-pint poly-U bin 99.6 1E-14 2.2E-19 115.9 12.6 82 32-113 203-284 (612)
13 KOG0113 U1 small nuclear ribon 99.6 9E-15 1.9E-19 105.3 10.7 84 30-113 98-181 (335)
14 KOG0107 Alternative splicing f 99.6 1E-14 2.2E-19 97.9 10.1 80 31-115 8-87 (195)
15 KOG0125 Ataxin 2-binding prote 99.6 4.1E-15 9E-20 108.3 8.6 83 29-113 92-174 (376)
16 TIGR01645 half-pint poly-U bin 99.6 5.8E-15 1.2E-19 117.3 10.0 83 29-111 103-185 (612)
17 KOG0111 Cyclophilin-type pepti 99.6 3.1E-15 6.7E-20 103.9 5.5 95 30-124 7-101 (298)
18 TIGR01628 PABP-1234 polyadenyl 99.6 2.7E-14 5.9E-19 113.9 10.9 77 35-111 2-78 (562)
19 KOG0145 RNA-binding protein EL 99.6 4.3E-14 9.3E-19 100.5 10.4 87 29-115 37-123 (360)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.6 6.7E-14 1.4E-18 110.4 12.3 83 31-113 293-375 (509)
21 PLN03121 nucleic acid binding 99.5 6E-14 1.3E-18 99.3 10.1 78 31-112 3-80 (243)
22 TIGR01622 SF-CC1 splicing fact 99.5 6.2E-14 1.3E-18 109.3 11.1 79 33-111 186-264 (457)
23 smart00362 RRM_2 RNA recogniti 99.5 1E-13 2.2E-18 80.5 9.4 72 35-108 1-72 (72)
24 KOG0126 Predicted RNA-binding 99.5 1.7E-15 3.7E-20 102.2 1.5 84 29-112 31-114 (219)
25 TIGR01628 PABP-1234 polyadenyl 99.5 7.4E-14 1.6E-18 111.5 11.0 84 30-114 282-365 (562)
26 TIGR01622 SF-CC1 splicing fact 99.5 1.4E-13 3.1E-18 107.2 11.2 83 30-113 86-168 (457)
27 PLN03213 repressor of silencin 99.5 8.7E-14 1.9E-18 106.5 9.4 80 30-113 7-88 (759)
28 TIGR01648 hnRNP-R-Q heterogene 99.5 1.2E-13 2.6E-18 109.5 9.9 80 30-110 55-135 (578)
29 smart00360 RRM RNA recognition 99.5 2.1E-13 4.5E-18 78.9 8.5 71 38-108 1-71 (71)
30 KOG0148 Apoptosis-promoting RN 99.5 4E-13 8.7E-18 95.9 10.8 82 27-114 158-239 (321)
31 KOG4207 Predicted splicing fac 99.5 1.8E-13 3.9E-18 94.3 8.6 82 30-111 10-91 (256)
32 KOG0130 RNA-binding protein RB 99.5 1.3E-13 2.8E-18 89.2 7.1 87 27-113 66-152 (170)
33 KOG0131 Splicing factor 3b, su 99.5 6.3E-14 1.4E-18 94.7 5.8 82 30-111 6-87 (203)
34 KOG0148 Apoptosis-promoting RN 99.5 1.8E-13 3.9E-18 97.6 8.1 83 32-114 61-143 (321)
35 KOG0144 RNA-binding protein CU 99.5 1.8E-13 3.8E-18 103.0 8.2 90 27-116 28-120 (510)
36 KOG0117 Heterogeneous nuclear 99.5 4E-13 8.7E-18 101.4 9.2 84 30-113 80-164 (506)
37 TIGR01648 hnRNP-R-Q heterogene 99.5 2E-12 4.3E-17 102.7 13.3 76 31-114 231-308 (578)
38 KOG0114 Predicted RNA-binding 99.5 7.4E-13 1.6E-17 81.9 8.5 82 29-113 14-95 (124)
39 KOG0108 mRNA cleavage and poly 99.5 3.6E-13 7.8E-18 103.5 8.7 81 34-114 19-99 (435)
40 COG0724 RNA-binding proteins ( 99.5 8E-13 1.7E-17 95.0 10.1 79 33-111 115-193 (306)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.7E-12 8.1E-17 100.1 14.0 78 31-113 273-351 (481)
42 KOG0144 RNA-binding protein CU 99.4 1.6E-13 3.5E-18 103.2 5.5 86 31-117 122-210 (510)
43 cd00590 RRM RRM (RNA recogniti 99.4 3.2E-12 6.8E-17 74.6 10.0 74 35-109 1-74 (74)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.3E-12 4.9E-17 101.3 10.9 77 32-114 1-79 (481)
45 KOG0117 Heterogeneous nuclear 99.4 1.3E-12 2.8E-17 98.8 8.7 103 4-114 221-332 (506)
46 KOG0105 Alternative splicing f 99.4 3.3E-12 7.2E-17 86.8 8.9 80 31-113 4-83 (241)
47 KOG0127 Nucleolar protein fibr 99.4 3.1E-12 6.7E-17 98.8 9.8 88 27-114 286-379 (678)
48 KOG0124 Polypyrimidine tract-b 99.4 5.6E-13 1.2E-17 98.8 4.7 77 33-109 113-189 (544)
49 KOG4212 RNA-binding protein hn 99.4 6.8E-12 1.5E-16 94.9 10.1 86 26-112 37-123 (608)
50 KOG0127 Nucleolar protein fibr 99.4 4E-12 8.7E-17 98.3 8.6 87 30-117 114-200 (678)
51 PF13893 RRM_5: RNA recognitio 99.3 1.1E-11 2.5E-16 69.6 8.1 56 50-110 1-56 (56)
52 KOG0145 RNA-binding protein EL 99.3 2.3E-11 5E-16 86.7 10.8 87 27-113 272-358 (360)
53 smart00361 RRM_1 RNA recogniti 99.3 1.3E-11 2.8E-16 72.7 7.9 62 47-108 2-70 (70)
54 KOG0109 RNA-binding protein LA 99.3 2.8E-12 6E-17 92.5 5.7 72 34-113 3-74 (346)
55 KOG0415 Predicted peptidyl pro 99.3 1.3E-11 2.9E-16 91.2 7.0 91 23-113 229-319 (479)
56 KOG4208 Nucleolar RNA-binding 99.3 2.2E-11 4.7E-16 83.9 7.5 84 30-113 46-130 (214)
57 KOG0131 Splicing factor 3b, su 99.3 1.4E-11 3.1E-16 83.4 6.5 93 25-117 88-181 (203)
58 KOG0146 RNA-binding protein ET 99.2 1.5E-11 3.2E-16 88.0 5.8 89 28-116 280-368 (371)
59 TIGR01642 U2AF_lg U2 snRNP aux 99.2 3.2E-10 7E-15 89.5 11.6 77 28-111 170-258 (509)
60 KOG0147 Transcriptional coacti 99.2 5E-11 1.1E-15 92.1 6.6 78 36-113 281-358 (549)
61 KOG4206 Spliceosomal protein s 99.2 1.5E-10 3.3E-15 80.8 7.8 80 32-114 8-91 (221)
62 KOG0123 Polyadenylate-binding 99.2 3E-10 6.6E-15 86.4 9.7 78 36-116 79-156 (369)
63 KOG0146 RNA-binding protein ET 99.1 1E-10 2.2E-15 83.7 6.4 83 32-115 18-103 (371)
64 KOG4661 Hsp27-ERE-TATA-binding 99.1 2.8E-10 6.1E-15 88.8 8.7 83 31-113 403-485 (940)
65 KOG0153 Predicted RNA-binding 99.1 5.4E-10 1.2E-14 82.4 9.7 82 25-112 220-302 (377)
66 KOG0116 RasGAP SH3 binding pro 99.1 9.1E-10 2E-14 84.5 10.9 85 31-116 286-370 (419)
67 KOG0109 RNA-binding protein LA 99.1 4.7E-10 1E-14 81.1 7.3 78 30-115 75-152 (346)
68 KOG4205 RNA-binding protein mu 99.0 3.3E-10 7.1E-15 83.9 5.5 84 32-116 5-88 (311)
69 KOG4205 RNA-binding protein mu 99.0 1.8E-09 3.8E-14 80.1 8.4 87 31-118 95-181 (311)
70 KOG0124 Polypyrimidine tract-b 99.0 1.2E-09 2.6E-14 81.3 7.1 110 4-113 172-290 (544)
71 KOG0132 RNA polymerase II C-te 99.0 1.5E-09 3.3E-14 87.1 7.6 78 33-116 421-498 (894)
72 KOG0123 Polyadenylate-binding 99.0 4.2E-09 9.2E-14 80.2 8.5 74 34-113 2-75 (369)
73 KOG0110 RNA-binding protein (R 98.9 1.1E-09 2.4E-14 87.0 4.3 81 33-113 613-693 (725)
74 KOG4212 RNA-binding protein hn 98.9 4.4E-09 9.5E-14 79.9 6.8 78 27-109 530-607 (608)
75 KOG4209 Splicing factor RNPS1, 98.9 1.4E-08 3.1E-13 72.7 8.5 85 28-113 96-180 (231)
76 KOG0533 RRM motif-containing p 98.9 1.7E-08 3.6E-13 72.4 8.8 83 30-113 80-162 (243)
77 KOG0110 RNA-binding protein (R 98.8 2.5E-08 5.4E-13 79.5 9.0 78 34-111 516-596 (725)
78 KOG0151 Predicted splicing reg 98.8 6.2E-08 1.3E-12 77.4 10.4 84 29-112 170-256 (877)
79 KOG1457 RNA binding protein (c 98.8 1.9E-07 4.2E-12 65.6 11.3 85 29-113 30-118 (284)
80 KOG0226 RNA-binding proteins [ 98.7 2.7E-08 5.9E-13 70.9 4.9 86 28-113 185-270 (290)
81 KOG0106 Alternative splicing f 98.7 3.4E-08 7.4E-13 69.5 5.2 72 34-113 2-73 (216)
82 KOG4660 Protein Mei2, essentia 98.7 1.9E-08 4.1E-13 78.2 3.4 72 30-106 72-143 (549)
83 KOG4211 Splicing factor hnRNP- 98.6 3.6E-07 7.8E-12 70.4 9.4 84 29-116 6-89 (510)
84 PF04059 RRM_2: RNA recognitio 98.6 7.5E-07 1.6E-11 55.4 9.0 79 34-112 2-86 (97)
85 KOG1548 Transcription elongati 98.5 4.6E-07 1E-11 67.2 7.9 83 30-113 131-221 (382)
86 KOG4454 RNA binding protein (R 98.5 7.5E-08 1.6E-12 67.4 1.8 80 30-111 6-85 (267)
87 KOG1190 Polypyrimidine tract-b 98.4 1.5E-06 3.3E-11 65.8 8.3 76 33-113 297-373 (492)
88 KOG0120 Splicing factor U2AF, 98.3 8.8E-07 1.9E-11 69.3 4.7 86 27-112 283-368 (500)
89 PF11608 Limkain-b1: Limkain b 98.3 7.5E-06 1.6E-10 49.1 7.5 70 34-113 3-77 (90)
90 COG5175 MOT2 Transcriptional r 98.3 3.7E-06 8E-11 62.5 7.4 85 29-113 110-203 (480)
91 KOG4849 mRNA cleavage factor I 98.2 1.2E-06 2.5E-11 65.3 3.4 83 29-111 76-160 (498)
92 KOG4211 Splicing factor hnRNP- 98.2 9.2E-06 2E-10 62.9 7.8 80 31-111 101-180 (510)
93 KOG1995 Conserved Zn-finger pr 98.1 9.5E-06 2.1E-10 60.5 6.0 85 30-114 63-155 (351)
94 KOG1457 RNA binding protein (c 98.0 6.1E-06 1.3E-10 58.1 3.7 65 33-101 210-274 (284)
95 KOG0147 Transcriptional coacti 98.0 4.1E-06 8.9E-11 65.5 2.1 84 29-113 175-258 (549)
96 KOG4206 Spliceosomal protein s 98.0 6.8E-05 1.5E-09 52.8 7.9 77 30-111 143-220 (221)
97 KOG4210 Nuclear localization s 97.9 1E-05 2.2E-10 59.9 3.9 83 30-113 181-264 (285)
98 PF08777 RRM_3: RNA binding mo 97.9 4.1E-05 8.9E-10 48.4 6.0 58 34-97 2-59 (105)
99 KOG4307 RNA binding protein RB 97.9 7.4E-05 1.6E-09 60.4 7.5 74 35-109 869-943 (944)
100 KOG0129 Predicted RNA-binding 97.8 7.3E-05 1.6E-09 58.3 6.8 68 27-94 364-432 (520)
101 KOG0106 Alternative splicing f 97.8 2.2E-05 4.7E-10 55.5 3.2 74 30-111 96-169 (216)
102 KOG1190 Polypyrimidine tract-b 97.6 0.00019 4.2E-09 54.7 6.6 77 31-112 412-490 (492)
103 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00021 4.6E-09 39.5 4.9 52 34-92 2-53 (53)
104 KOG1456 Heterogeneous nuclear 97.6 0.0027 5.8E-08 48.2 11.5 82 27-113 281-363 (494)
105 KOG3152 TBP-binding protein, a 97.5 6.8E-05 1.5E-09 53.8 2.1 73 32-104 73-157 (278)
106 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.001 2.2E-08 41.7 6.6 77 32-110 5-89 (100)
107 KOG1456 Heterogeneous nuclear 97.4 0.006 1.3E-07 46.4 11.4 71 39-114 128-200 (494)
108 KOG2314 Translation initiation 97.3 0.0013 2.9E-08 52.2 7.5 78 31-109 56-140 (698)
109 KOG0120 Splicing factor U2AF, 97.3 0.0015 3.2E-08 51.7 7.5 63 49-111 425-490 (500)
110 KOG1365 RNA-binding protein Fu 97.2 0.00065 1.4E-08 51.6 5.0 82 31-113 278-362 (508)
111 KOG0105 Alternative splicing f 97.1 0.0029 6.3E-08 43.7 6.8 66 28-100 110-175 (241)
112 KOG0129 Predicted RNA-binding 97.1 0.0034 7.5E-08 49.3 7.9 67 29-96 255-327 (520)
113 KOG1855 Predicted RNA-binding 97.0 0.0023 5E-08 49.3 5.9 71 27-97 225-308 (484)
114 PF10309 DUF2414: Protein of u 97.0 0.0069 1.5E-07 34.4 6.5 57 31-95 3-62 (62)
115 KOG1548 Transcription elongati 96.9 0.0068 1.5E-07 45.5 7.6 83 26-112 258-351 (382)
116 KOG2416 Acinus (induces apopto 96.8 0.0015 3.2E-08 52.2 4.0 78 29-112 440-521 (718)
117 KOG0112 Large RNA-binding prot 96.7 0.0038 8.2E-08 52.0 5.6 78 29-112 451-530 (975)
118 KOG4676 Splicing factor, argin 96.7 0.0029 6.3E-08 48.3 4.5 75 34-109 8-85 (479)
119 KOG2068 MOT2 transcription fac 96.6 0.0008 1.7E-08 50.2 1.2 84 30-113 74-163 (327)
120 PF08952 DUF1866: Domain of un 96.6 0.013 2.8E-07 39.0 6.7 55 49-112 52-106 (146)
121 KOG1996 mRNA splicing factor [ 96.6 0.0095 2.1E-07 44.0 6.6 64 48-111 301-365 (378)
122 KOG0128 RNA-binding protein SA 96.6 0.0019 4.2E-08 53.4 3.3 80 32-112 735-814 (881)
123 PF08675 RNA_bind: RNA binding 96.6 0.027 5.9E-07 33.9 7.2 59 30-97 6-64 (87)
124 KOG2202 U2 snRNP splicing fact 96.5 0.0014 3E-08 47.2 1.6 64 49-113 84-148 (260)
125 KOG4307 RNA binding protein RB 96.5 0.004 8.7E-08 50.7 4.4 86 26-112 427-513 (944)
126 KOG1365 RNA-binding protein Fu 96.4 0.0086 1.9E-07 45.7 5.5 76 34-111 162-241 (508)
127 KOG2193 IGF-II mRNA-binding pr 96.1 0.0057 1.2E-07 47.2 3.1 76 34-115 2-78 (584)
128 KOG0128 RNA-binding protein SA 95.6 0.00074 1.6E-08 55.7 -3.7 78 32-109 666-743 (881)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.035 7.7E-07 38.3 4.7 83 31-113 5-98 (176)
130 KOG0112 Large RNA-binding prot 95.2 0.0064 1.4E-07 50.8 0.5 82 29-111 368-449 (975)
131 PF07576 BRAP2: BRCA1-associat 95.2 0.46 1E-05 30.2 9.2 67 34-102 14-81 (110)
132 PF11767 SET_assoc: Histone ly 94.9 0.32 7E-06 28.0 6.9 55 44-107 11-65 (66)
133 KOG2135 Proteins containing th 94.7 0.047 1E-06 42.8 3.8 76 31-113 370-446 (526)
134 KOG2591 c-Mpl binding protein, 94.6 0.079 1.7E-06 42.4 5.0 74 29-109 171-248 (684)
135 PF04847 Calcipressin: Calcipr 94.6 0.16 3.6E-06 35.3 6.1 62 46-113 8-71 (184)
136 KOG0115 RNA-binding protein p5 94.5 0.047 1E-06 39.6 3.4 62 34-96 32-93 (275)
137 KOG4285 Mitotic phosphoprotein 94.3 0.21 4.5E-06 37.2 6.2 67 36-110 200-267 (350)
138 PF15023 DUF4523: Protein of u 94.0 0.44 9.5E-06 31.8 6.7 72 30-109 83-158 (166)
139 KOG4574 RNA-binding protein (c 93.6 0.09 2E-06 44.1 3.7 77 34-116 299-377 (1007)
140 KOG4660 Protein Mei2, essentia 92.0 0.48 1E-05 38.0 5.6 56 58-113 414-473 (549)
141 KOG0804 Cytoplasmic Zn-finger 91.1 1.1 2.5E-05 35.2 6.7 68 33-102 74-142 (493)
142 PF03880 DbpA: DbpA RNA bindin 90.8 1.6 3.6E-05 25.4 5.9 58 44-110 12-74 (74)
143 KOG4410 5-formyltetrahydrofola 89.0 2.2 4.8E-05 31.8 6.5 51 30-85 327-377 (396)
144 KOG2253 U1 snRNP complex, subu 88.7 0.41 8.8E-06 39.2 2.8 76 25-109 32-107 (668)
145 KOG4483 Uncharacterized conser 88.0 2.8 6.2E-05 32.7 6.7 64 24-94 382-446 (528)
146 KOG2193 IGF-II mRNA-binding pr 87.3 0.039 8.4E-07 42.8 -3.5 78 31-112 78-156 (584)
147 KOG4210 Nuclear localization s 86.3 0.47 1E-05 35.3 1.7 77 32-108 87-163 (285)
148 smart00596 PRE_C2HC PRE_C2HC d 77.7 4.9 0.00011 23.3 3.4 63 48-113 2-65 (69)
149 KOG2318 Uncharacterized conser 74.6 26 0.00056 28.9 7.7 82 30-111 171-306 (650)
150 PF07530 PRE_C2HC: Associated 73.1 9.8 0.00021 21.9 4.0 63 48-113 2-65 (68)
151 PF15513 DUF4651: Domain of un 71.4 9 0.00019 21.7 3.4 21 48-68 9-29 (62)
152 PF03468 XS: XS domain; Inter 70.3 13 0.00028 23.8 4.5 61 34-98 9-79 (116)
153 PF10567 Nab6_mRNP_bdg: RNA-re 69.6 12 0.00027 28.0 4.7 85 27-111 9-106 (309)
154 KOG4019 Calcineurin-mediated s 54.5 12 0.00026 26.0 2.3 74 33-112 10-89 (193)
155 KOG4676 Splicing factor, argin 54.2 1.6 3.5E-05 33.9 -2.2 63 34-101 152-214 (479)
156 KOG4454 RNA binding protein (R 52.4 6.1 0.00013 28.5 0.6 67 34-101 81-151 (267)
157 COG0724 RNA-binding proteins ( 46.1 46 0.00099 23.2 4.3 43 27-69 219-261 (306)
158 PF02714 DUF221: Domain of unk 45.9 38 0.00081 25.3 4.0 32 78-111 1-32 (325)
159 PF07292 NID: Nmi/IFP 35 domai 42.9 18 0.00038 22.1 1.5 27 29-55 48-74 (88)
160 PF09707 Cas_Cas2CT1978: CRISP 40.8 76 0.0016 19.2 4.0 50 31-83 23-72 (86)
161 KOG2295 C2H2 Zn-finger protein 37.5 4.8 0.0001 32.7 -2.0 73 31-103 229-301 (648)
162 PRK11634 ATP-dependent RNA hel 35.2 2.7E+02 0.0058 23.4 7.6 59 44-111 498-561 (629)
163 PRK11558 putative ssRNA endonu 31.6 92 0.002 19.4 3.4 51 31-84 25-75 (97)
164 KOG4365 Uncharacterized conser 31.0 11 0.00023 30.0 -1.0 76 36-112 6-81 (572)
165 KOG2891 Surface glycoprotein [ 27.3 91 0.002 23.5 3.3 50 31-80 147-213 (445)
166 KOG4008 rRNA processing protei 26.6 57 0.0012 23.8 2.1 33 28-60 35-67 (261)
167 PRK11901 hypothetical protein; 26.1 1.8E+02 0.004 22.3 4.8 64 30-98 242-307 (327)
168 PRK14548 50S ribosomal protein 25.9 1.6E+02 0.0034 17.7 5.0 55 36-93 23-79 (84)
169 PF01282 Ribosomal_S24e: Ribos 23.6 1.7E+02 0.0038 17.4 4.8 45 45-90 13-62 (84)
170 PF11823 DUF3343: Protein of u 22.1 1.5E+02 0.0033 16.8 3.1 24 77-100 3-26 (73)
171 TIGR03636 L23_arch archaeal ri 21.2 1.9E+02 0.0042 17.0 5.0 55 36-93 16-72 (77)
172 KOG4213 RNA-binding protein La 21.1 2.5E+02 0.0055 19.7 4.3 49 45-94 118-169 (205)
173 PF13046 DUF3906: Protein of u 21.1 1.5E+02 0.0032 16.9 2.7 31 48-80 33-63 (64)
174 TIGR01873 cas_CT1978 CRISPR-as 21.0 2E+02 0.0044 17.4 3.5 51 31-84 23-74 (87)
175 PF03389 MobA_MobL: MobA/MobL 20.5 3.2E+02 0.007 19.4 5.2 51 33-86 67-125 (216)
176 COG0030 KsgA Dimethyladenosine 20.2 2E+02 0.0043 21.3 3.9 28 33-60 95-122 (259)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=7.8e-20 Score=122.06 Aligned_cols=113 Identities=41% Similarity=0.569 Sum_probs=92.9
Q ss_pred hhhhHHHHHhccCccccc-cccCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEE
Q 032319 2 AFASSFRRALSSGSSILK-SQLGSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFV 80 (143)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv 80 (143)
++--++...+.+...+.. ..-+...........+|||+|||+.+++++|+++|.+||.|..+.++.+..++++++||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV 81 (144)
T PLN03134 2 AFCNKLGGLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81 (144)
T ss_pred chhhhhhhhhcccccCCCCCccccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEE
Confidence 344444554555544442 3333344444677789999999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCCC
Q 032319 81 SYTSIEEAERAREGMNAKYLDGWVIFVDPAKSRE 114 (143)
Q Consensus 81 ~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~~ 114 (143)
+|.+.++|+.|++.|++..|.++.|+|.++..+.
T Consensus 82 ~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 82 NFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCC
Confidence 9999999999999999999999999999987554
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=4.2e-17 Score=123.02 Aligned_cols=84 Identities=33% Similarity=0.426 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.....|||+|||+.+++++|+++|++||.|..++|+.+..++.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 33457999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032319 111 KSRE 114 (143)
Q Consensus 111 ~~~~ 114 (143)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 8654
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=6.4e-17 Score=122.04 Aligned_cols=83 Identities=31% Similarity=0.522 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
+..+|||+|||..+++++|+++|..||+|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q 032319 112 SRE 114 (143)
Q Consensus 112 ~~~ 114 (143)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=1.2e-16 Score=93.53 Aligned_cols=70 Identities=39% Similarity=0.672 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 36 v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
|||+|||..+++++|+++|..||.+..+.+..+ .++..+++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 5688999999999999999999999999999999885
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=1e-16 Score=120.64 Aligned_cols=85 Identities=25% Similarity=0.365 Sum_probs=80.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......++|||++||..+++++|+++|..||.|.+|+|+.+..++++++||||+|.++++|.+|+..|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCC
Q 032319 108 DPAKS 112 (143)
Q Consensus 108 ~~~~~ 112 (143)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98864
No 6
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.7e-16 Score=101.44 Aligned_cols=83 Identities=30% Similarity=0.325 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
...+++|||+||++.++|++|.++|+.+|+|..+.|-.++.+...+|||||+|.+.++|+.|++.+++..|..++|.+.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 032319 110 AKS 112 (143)
Q Consensus 110 ~~~ 112 (143)
...
T Consensus 113 D~G 115 (153)
T KOG0121|consen 113 DAG 115 (153)
T ss_pred ccc
Confidence 764
No 7
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=6e-16 Score=108.12 Aligned_cols=81 Identities=40% Similarity=0.602 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
-.-.+||||+|++.+..+.|+++|++||+|++..++.++.+|+++||+||+|.|.++|.+|++. .+..|+||+..+..+
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3456999999999999999999999999999999999999999999999999999999999994 667899999888876
Q ss_pred CC
Q 032319 111 KS 112 (143)
Q Consensus 111 ~~ 112 (143)
.-
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 53
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=4.5e-15 Score=111.85 Aligned_cols=83 Identities=30% Similarity=0.548 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEe
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG--WVIFVD 108 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~--~~l~v~ 108 (143)
....+|||+|||..+++++|+++|.+||.|..++|+.++.++++++||||+|.+.++|++||+.|++..+.+ ++|.|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999998899999999999999999999999999998866 688888
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
++...
T Consensus 271 ~a~~~ 275 (346)
T TIGR01659 271 LAEEH 275 (346)
T ss_pred ECCcc
Confidence 87754
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.6e-15 Score=106.54 Aligned_cols=84 Identities=31% Similarity=0.470 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.....+|-|.||+.++++++|+++|.+||.|..+.|.+++.||.++|||||.|.++++|.+||..|+|+-+.+-.|+|++
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 032319 110 AKSR 113 (143)
Q Consensus 110 ~~~~ 113 (143)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9864
No 10
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=4.7e-15 Score=87.16 Aligned_cols=70 Identities=37% Similarity=0.655 Sum_probs=64.4
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 36 v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
|||+|||..+++++|+++|..+|.|..+.+..++. +..+++|||+|.+.++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999998999999874
No 11
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=7.6e-15 Score=105.21 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=71.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKS 112 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~ 112 (143)
.++|||+|||+.+++++|+++|+.||+|.++.|..+.. .+|||||+|.++++|..|+. |++..|.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999988753 46899999999999999996 999999999999999874
Q ss_pred C
Q 032319 113 R 113 (143)
Q Consensus 113 ~ 113 (143)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.61 E-value=1e-14 Score=115.89 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=78.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
...+|||+||+..+++++|+++|+.||.|..++|.++..+++++|||||+|.+.++|..|+..+|+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998889999999999999999999999999999999999999888
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 54
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=9e-15 Score=105.34 Aligned_cols=84 Identities=29% Similarity=0.521 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.++-+||||+-|++.++|..|+..|..||.|..|.|+.++.||+++|||||+|+.+.+...|.+..++.+|.++.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 47778999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 032319 110 AKSR 113 (143)
Q Consensus 110 ~~~~ 113 (143)
-+..
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 7654
No 14
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1e-14 Score=97.90 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.-.++|||+||+..+++.+|...|..||.+..++|...+ .|||||+|++..+|..|+..|++..|+|..|.|+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 346899999999999999999999999999999987763 689999999999999999999999999999999998
Q ss_pred CCCCC
Q 032319 111 KSREA 115 (143)
Q Consensus 111 ~~~~~ 115 (143)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86543
No 15
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=4.1e-15 Score=108.28 Aligned_cols=83 Identities=34% Similarity=0.515 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
..+...+|||+|||+.+.+-||+.+|.+||+|.+++|+.+. -.++||+||+|++.++|.+|-.+||+..+.||+|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 44566899999999999999999999999999999998874 3489999999999999999999999999999999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
.+..+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 98765
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=5.8e-15 Score=117.33 Aligned_cols=83 Identities=34% Similarity=0.488 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+||++.+++++|+++|..||.|.++.+..++.+++++|||||+|.+.++|..|+..||+..+.|+.|+|.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCC
Q 032319 109 PAK 111 (143)
Q Consensus 109 ~~~ 111 (143)
...
T Consensus 183 rp~ 185 (612)
T TIGR01645 183 RPS 185 (612)
T ss_pred ccc
Confidence 543
No 17
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.1e-15 Score=103.90 Aligned_cols=95 Identities=31% Similarity=0.467 Sum_probs=87.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....++||||+|...+++..|...|.+||.|..+.+..+..+++++||+||+|...++|.+||..++...|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCC
Q 032319 110 AKSREARPPPPPPYP 124 (143)
Q Consensus 110 ~~~~~~~~~~~~~~~ 124 (143)
+++..-+.+...|-+
T Consensus 87 AkP~kikegsqkPvW 101 (298)
T KOG0111|consen 87 AKPEKIKEGSQKPVW 101 (298)
T ss_pred cCCccccCCCCCCcc
Confidence 998876666655555
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=2.7e-14 Score=113.95 Aligned_cols=77 Identities=38% Similarity=0.548 Sum_probs=74.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 35 ~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
+|||+|||..+++++|+++|..||.|.+|+|+++..+++++|||||+|.+.++|++|+..+++..+.|+.|+|.++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999875
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=4.3e-14 Score=100.47 Aligned_cols=87 Identities=29% Similarity=0.466 Sum_probs=81.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.......+.|--||..+++++++.+|...|+|++|++++++.+|.+.||+||.|-++.+|++|+..|||..|..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032319 109 PAKSREA 115 (143)
Q Consensus 109 ~~~~~~~ 115 (143)
++++...
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9997653
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.56 E-value=6.7e-14 Score=110.37 Aligned_cols=83 Identities=27% Similarity=0.389 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
....+|||+|||..+++++|+++|..||.|..+.|+.+..+|.++|||||+|.+.+.|..|+..|++..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44579999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCC
Q 032319 111 KSR 113 (143)
Q Consensus 111 ~~~ 113 (143)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 643
No 21
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.55 E-value=6e-14 Score=99.29 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
....+|||+||++.+++++|+++|+.||+|.+|.|.++. ...++|||+|.++..++.|+. |+|..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 346899999999999999999999999999999999884 445799999999999999996 8999999999999986
Q ss_pred CC
Q 032319 111 KS 112 (143)
Q Consensus 111 ~~ 112 (143)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 63
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.55 E-value=6.2e-14 Score=109.29 Aligned_cols=79 Identities=39% Similarity=0.570 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
..+|||+|||..+++++|+.+|..||.|..+.+..+..+|.++|||||+|.+.++|..|+..|++..+.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999998888999999999999999999999999999999999999976
No 23
>smart00362 RRM_2 RNA recognition motif.
Probab=99.54 E-value=1e-13 Score=80.55 Aligned_cols=72 Identities=43% Similarity=0.656 Sum_probs=66.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 35 ~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
+|||+|||..+++++|+++|..||.+..+.+..+. +.+.++|||+|.+.+.|..|+..+++..+.++++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988875 6788999999999999999999999999999988763
No 24
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.7e-15 Score=102.25 Aligned_cols=84 Identities=27% Similarity=0.455 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
....+.-|||||||+..++.+|..+|++||+|..+-|++++.||+++||||+.|++..+.--|+..|||..|.|+.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 34667799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eCCC
Q 032319 109 PAKS 112 (143)
Q Consensus 109 ~~~~ 112 (143)
....
T Consensus 111 Hv~~ 114 (219)
T KOG0126|consen 111 HVSN 114 (219)
T ss_pred eccc
Confidence 7653
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=7.4e-14 Score=111.47 Aligned_cols=84 Identities=38% Similarity=0.631 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.....+|||+||+..+++++|+++|+.||.|.++++..+ .++.++|||||+|.+.++|.+|+..+|+..+.|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 445678999999999999999999999999999999998 5799999999999999999999999999999999999999
Q ss_pred CCCCC
Q 032319 110 AKSRE 114 (143)
Q Consensus 110 ~~~~~ 114 (143)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 88653
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=1.4e-13 Score=107.22 Aligned_cols=83 Identities=25% Similarity=0.403 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.....+|||+|||..+++++|+++|..||.|..+.|+.++.+++++|||||+|.+.++|.+|+. |++..+.|++|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3456799999999999999999999999999999999999899999999999999999999997 899999999999988
Q ss_pred CCCC
Q 032319 110 AKSR 113 (143)
Q Consensus 110 ~~~~ 113 (143)
....
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 6543
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=8.7e-14 Score=106.48 Aligned_cols=80 Identities=19% Similarity=0.337 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI--EEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~l~~~~l~v 107 (143)
.....+||||||++.+++++|+.+|..||.|..+.|++. +| +|||||+|... .++.+||..|++..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345689999999999999999999999999999999844 56 89999999976 7899999999999999999999
Q ss_pred eeCCCC
Q 032319 108 DPAKSR 113 (143)
Q Consensus 108 ~~~~~~ 113 (143)
..+++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999864
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=1.2e-13 Score=109.54 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEe
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD-GWVIFVD 108 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~-~~~l~v~ 108 (143)
....++|||+|||.++++++|+++|++||.|.+++|+.+ .+++++|||||+|.+.++|..||+.|++..+. ++.|.|+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 456789999999999999999999999999999999999 78999999999999999999999999998874 6666666
Q ss_pred eC
Q 032319 109 PA 110 (143)
Q Consensus 109 ~~ 110 (143)
.+
T Consensus 134 ~S 135 (578)
T TIGR01648 134 IS 135 (578)
T ss_pred cc
Confidence 54
No 29
>smart00360 RRM RNA recognition motif.
Probab=99.51 E-value=2.1e-13 Score=78.93 Aligned_cols=71 Identities=42% Similarity=0.688 Sum_probs=66.0
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 38 VSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 38 v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
|+|||..+++++|+.+|..||.+..+.+..++.++.++++|||+|.+.++|..|+..+++..+.++.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999887778899999999999999999999999999999988773
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4e-13 Score=95.87 Aligned_cols=82 Identities=23% Similarity=0.447 Sum_probs=75.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+.+....++||||||+..+++++|++.|+.||.|.++++..+ +||+||.|.+.+.|..||..+|+..+.|..++
T Consensus 158 NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~Vk 231 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVR 231 (321)
T ss_pred ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEE
Confidence 345677799999999999999999999999999999999887 56999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
+.+.+...
T Consensus 232 CsWGKe~~ 239 (321)
T KOG0148|consen 232 CSWGKEGD 239 (321)
T ss_pred EeccccCC
Confidence 99998654
No 31
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.49 E-value=1.8e-13 Score=94.30 Aligned_cols=82 Identities=29% Similarity=0.432 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
..--..|-|.||.+-++.++|+.+|++||.|-+|.|.++..|+.++|||||-|.+..+|+.|+++|++.+|.|+.|.|..
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CC
Q 032319 110 AK 111 (143)
Q Consensus 110 ~~ 111 (143)
++
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 76
No 32
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=89.15 Aligned_cols=87 Identities=28% Similarity=0.444 Sum_probs=81.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+.-....+.|||.++....++++|.+.|..||+|..+.|..++.||..+|||+|+|++..+|++|+..+|+..|.+..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 44556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCC
Q 032319 107 VDPAKSR 113 (143)
Q Consensus 107 v~~~~~~ 113 (143)
|.++..+
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9988754
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.48 E-value=6.3e-14 Score=94.67 Aligned_cols=82 Identities=29% Similarity=0.415 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
..+..+|||+||+..++++.|.++|-+.|.|..+.+..++.++..+||||++|.++++|.-|++.|+...|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999998899999999998
Q ss_pred CC
Q 032319 110 AK 111 (143)
Q Consensus 110 ~~ 111 (143)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.8e-13 Score=97.62 Aligned_cols=83 Identities=43% Similarity=0.647 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
+..-|||+.|...++-++|++.|.+||+|.+++++++..|++++||+||.|-+.++|+.||..++|..|++|.|+-.++.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 032319 112 SRE 114 (143)
Q Consensus 112 ~~~ 114 (143)
.+.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 665
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.8e-13 Score=103.00 Aligned_cols=90 Identities=30% Similarity=0.498 Sum_probs=80.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCC--e
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKY-LDG--W 103 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-l~~--~ 103 (143)
++.+.+.-++||+-||..++|.+|+.+|++||.|.+|-|.+|+.++.++|||||.|.+.++|.+|+.+||+.. |.| +
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 4455777899999999999999999999999999999999999999999999999999999999999999884 544 7
Q ss_pred EEEEeeCCCCCCC
Q 032319 104 VIFVDPAKSREAR 116 (143)
Q Consensus 104 ~l~v~~~~~~~~~ 116 (143)
+|.|+++....++
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 8999998865544
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4e-13 Score=101.41 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-CCeEEEEe
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL-DGWVIFVD 108 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l-~~~~l~v~ 108 (143)
....+.||||.||.++.|++|.-+|++.|+|-+++|+.++.+|.++|||||+|.+.++|+.|++.||++.| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 46779999999999999999999999999999999999999999999999999999999999999999975 67888888
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
.+...
T Consensus 160 ~Svan 164 (506)
T KOG0117|consen 160 VSVAN 164 (506)
T ss_pred Eeeec
Confidence 76543
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.46 E-value=2e-12 Score=102.70 Aligned_cols=76 Identities=32% Similarity=0.457 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCC--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPF--GQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~--g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
....+|||+||+..+++++|+++|+.| |.|..+++.. +||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 9999987653 499999999999999999999999999999999
Q ss_pred eCCCCC
Q 032319 109 PAKSRE 114 (143)
Q Consensus 109 ~~~~~~ 114 (143)
++++..
T Consensus 303 ~Akp~~ 308 (578)
T TIGR01648 303 LAKPVD 308 (578)
T ss_pred EccCCC
Confidence 998754
No 38
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=7.4e-13 Score=81.95 Aligned_cols=82 Identities=18% Similarity=0.319 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....+.+||.|||+.++.++.-++|..||.|..++|-..+. .+|-|||.|++..+|.+|+++|.+.-+.++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 456678999999999999999999999999999999977644 57899999999999999999999999999999998
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
+-.+.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 87643
No 39
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.45 E-value=3.6e-13 Score=103.46 Aligned_cols=81 Identities=32% Similarity=0.554 Sum_probs=78.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
+.|||||+|+.+++++|..+|+..|.|..++++.|+.+|+.+||+|++|.+.+++..|++.|++..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred C
Q 032319 114 E 114 (143)
Q Consensus 114 ~ 114 (143)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=8e-13 Score=95.01 Aligned_cols=79 Identities=41% Similarity=0.639 Sum_probs=76.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
..+|||+|||..+++++|.++|..||.+..+.+..++.++.++|+|||+|.+++++..|+..+++..+.|++|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999998889999999999999999999999999999999999999965
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.44 E-value=3.7e-12 Score=100.12 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 31 LTSPRLFVSGLSR-LTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 31 ~~~~~v~v~~l~~-~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.+..+|||+||+. .+++++|+++|+.||.|..++++.++ +|+|||+|.+.++|..|+..||+..|.|++|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4668999999998 69999999999999999999998863 58999999999999999999999999999999999
Q ss_pred CCCC
Q 032319 110 AKSR 113 (143)
Q Consensus 110 ~~~~ 113 (143)
++.+
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 42
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.6e-13 Score=103.21 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-eeCC--eEEEE
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK-YLDG--WVIFV 107 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-~l~~--~~l~v 107 (143)
...+++||+.|+..++|++++++|++||.|++|.|+++.+ +.++|||||.|...+.|..||+.||+. ++.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 3468999999999999999999999999999999999965 999999999999999999999999998 4655 67999
Q ss_pred eeCCCCCCCC
Q 032319 108 DPAKSREARP 117 (143)
Q Consensus 108 ~~~~~~~~~~ 117 (143)
+++.+++.+.
T Consensus 201 kFADtqkdk~ 210 (510)
T KOG0144|consen 201 KFADTQKDKD 210 (510)
T ss_pred EecccCCCch
Confidence 9999876543
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.43 E-value=3.2e-12 Score=74.55 Aligned_cols=74 Identities=39% Similarity=0.642 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 35 ~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
+|+|++||..+++++|+.+|..+|.+..+.+..+..+ ...++|||+|.+.++|..|++.+++..+.++.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999887643 6788999999999999999999999999999998863
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=2.3e-12 Score=101.32 Aligned_cols=77 Identities=26% Similarity=0.394 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEee
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM--NAKYLDGWVIFVDP 109 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~l~~~~l~v~~ 109 (143)
++++|||+|||..+++++|+++|++||.|..+.++.+ +++|||+|.+.++|.+|+..+ ++..+.|++|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3678999999999999999999999999999988754 469999999999999999864 67889999999999
Q ss_pred CCCCC
Q 032319 110 AKSRE 114 (143)
Q Consensus 110 ~~~~~ 114 (143)
+..+.
T Consensus 75 s~~~~ 79 (481)
T TIGR01649 75 STSQE 79 (481)
T ss_pred cCCcc
Confidence 87543
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=1.3e-12 Score=98.76 Aligned_cols=103 Identities=32% Similarity=0.354 Sum_probs=83.1
Q ss_pred hhHHHHHhccCcccccc------ccC---CCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCc
Q 032319 4 ASSFRRALSSGSSILKS------QLG---SIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRS 74 (143)
Q Consensus 4 ~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~ 74 (143)
|+..+|++..++-.+-. +.. ..+.+.-.....+||.||+..+|++.|+++|..||+|..++.+++
T Consensus 221 Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------ 294 (506)
T KOG0117|consen 221 AAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------ 294 (506)
T ss_pred HHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc------
Confidence 45566666666554432 221 222223455578999999999999999999999999999987766
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCCC
Q 032319 75 KGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSRE 114 (143)
Q Consensus 75 ~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~~ 114 (143)
||||.|.+.++|.+|++.++++.|.|..|.|..+++..
T Consensus 295 --YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 295 --YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred --eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 99999999999999999999999999999999999754
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=3.3e-12 Score=86.78 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
...++|||+|||..+.+.+|+++|-+||.|..|.|.... ...+||||+|++..+|+.||..-++..+.+++|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 346899999999999999999999999999999886553 24679999999999999999988999999999999998
Q ss_pred CCC
Q 032319 111 KSR 113 (143)
Q Consensus 111 ~~~ 113 (143)
+.-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 753
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=3.1e-12 Score=98.85 Aligned_cols=88 Identities=33% Similarity=0.518 Sum_probs=78.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-----CC-cee
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM-----NA-KYL 100 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-----~~-~~l 100 (143)
+.+.....+|||.|||+.+++++|..+|++||.|.+..|+.++.|+.++|.|||.|.+...++.||... .+ ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 344566689999999999999999999999999999999999999999999999999999999999875 23 478
Q ss_pred CCeEEEEeeCCCCC
Q 032319 101 DGWVIFVDPAKSRE 114 (143)
Q Consensus 101 ~~~~l~v~~~~~~~ 114 (143)
.|+.|+|..+..+.
T Consensus 366 ~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRK 379 (678)
T ss_pred eccEEeeeeccchH
Confidence 99999999987653
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=5.6e-13 Score=98.80 Aligned_cols=77 Identities=36% Similarity=0.533 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
-++||||.+.+.+.++.|+..|..||.|.++.+.|+..|++++|||||+|+-.+.|+-|++.+|+.+++|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999973
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.36 E-value=6.8e-12 Score=94.89 Aligned_cols=86 Identities=19% Similarity=0.346 Sum_probs=77.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhc-CCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 032319 26 RYNSTLTSPRLFVSGLSRLTTDEKLKEAFA-PFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV 104 (143)
Q Consensus 26 ~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~-~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~ 104 (143)
-.+.....+.+||.|||+.+.|.+|+++|. +.|+|+.|.|+.+. .|+++|||.|+|++++.+++|++.|+.+.+.++.
T Consensus 37 ~gn~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~ 115 (608)
T KOG4212|consen 37 GGNVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRE 115 (608)
T ss_pred CCCcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCce
Confidence 344556667799999999999999999997 58999999999985 5999999999999999999999999999999999
Q ss_pred EEEeeCCC
Q 032319 105 IFVDPAKS 112 (143)
Q Consensus 105 l~v~~~~~ 112 (143)
|.|+....
T Consensus 116 l~vKEd~d 123 (608)
T KOG4212|consen 116 LVVKEDHD 123 (608)
T ss_pred EEEeccCc
Confidence 99998764
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=4e-12 Score=98.25 Aligned_cols=87 Identities=29% Similarity=0.429 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
..+.+.+.|.|||+.+...+|+.+|+.||.+.++.|.+..+ |+.+|||||+|....+|..|++.+|++.|.|++|-|.|
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 44588999999999999999999999999999999997765 77779999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 032319 110 AKSREARP 117 (143)
Q Consensus 110 ~~~~~~~~ 117 (143)
+-.+....
T Consensus 193 AV~Kd~ye 200 (678)
T KOG0127|consen 193 AVDKDTYE 200 (678)
T ss_pred eccccccc
Confidence 98765443
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.35 E-value=1.1e-11 Score=69.65 Aligned_cols=56 Identities=32% Similarity=0.618 Sum_probs=50.2
Q ss_pred HHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 50 LKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 50 l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
|+++|++||+|..+.+.... .++|||+|.+.++|..|+..||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987663 579999999999999999999999999999999875
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.3e-11 Score=86.74 Aligned_cols=87 Identities=32% Similarity=0.403 Sum_probs=81.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+......+.|||=||..++++..|.++|.+||.|..+++.++..|.+.+||+||...+-++|..||..|||..++++.+.
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 44566689999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EeeCCCC
Q 032319 107 VDPAKSR 113 (143)
Q Consensus 107 v~~~~~~ 113 (143)
|.+...+
T Consensus 352 VsFKtnk 358 (360)
T KOG0145|consen 352 VSFKTNK 358 (360)
T ss_pred EEEecCC
Confidence 9987654
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.33 E-value=1.3e-11 Score=72.66 Aligned_cols=62 Identities=24% Similarity=0.507 Sum_probs=54.5
Q ss_pred HHHHHHhhc----CCCCeeEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 47 DEKLKEAFA----PFGQLVYSK-VITDRAT--GRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 47 ~~~l~~~f~----~~g~i~~~~-l~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
+++|+++|+ +||.+.++. +..++.+ +.++|++||.|.+.++|..|+..||+..+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467888888 999999985 6666656 8899999999999999999999999999999998763
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=2.8e-12 Score=92.45 Aligned_cols=72 Identities=28% Similarity=0.536 Sum_probs=68.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
.++||+|||..+++.+|+.+|++||+|.+|.|+.+ |+||..++...++.||..|++.+|.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47899999999999999999999999999999776 9999999999999999999999999999999998876
No 55
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-11 Score=91.18 Aligned_cols=91 Identities=33% Similarity=0.441 Sum_probs=83.8
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 032319 23 GSIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG 102 (143)
Q Consensus 23 ~~~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~ 102 (143)
..++.....+...+||..|.+-++.++|.-+|+.||.|..|.+.++..||.+..||||+|.+.+++++|.=.+++..|.+
T Consensus 229 DlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 229 DLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred CCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 44455566788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCCC
Q 032319 103 WVIFVDPAKSR 113 (143)
Q Consensus 103 ~~l~v~~~~~~ 113 (143)
++|+|.++.+-
T Consensus 309 rRIHVDFSQSV 319 (479)
T KOG0415|consen 309 RRIHVDFSQSV 319 (479)
T ss_pred ceEEeehhhhh
Confidence 99999987753
No 56
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.27 E-value=2.2e-11 Score=83.95 Aligned_cols=84 Identities=23% Similarity=0.310 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCC-CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPF-GQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~-g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|+..+|..+.+..+..+|.++ |.+..+++.+++.||+++|||||+|++++.|+.|.+.+|++.+.++.|.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4455678999999999999999999987 688889999999999999999999999999999999999999999999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87654
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.27 E-value=1.4e-11 Score=83.38 Aligned_cols=93 Identities=31% Similarity=0.515 Sum_probs=82.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 25 IRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVY-SKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 25 ~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~-~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
.+......+..+||+||.+.+++..|.+.|+.||.+.. -+++++..||+.++|+||.|.+.+.+.+|+..+++..++++
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr 167 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNR 167 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCC
Confidence 44445566689999999999999999999999997754 58899999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCCCCC
Q 032319 104 VIFVDPAKSREARP 117 (143)
Q Consensus 104 ~l~v~~~~~~~~~~ 117 (143)
++.|.++..+..+.
T Consensus 168 ~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 168 PITVSYAFKKDTKG 181 (203)
T ss_pred ceEEEEEEecCCCc
Confidence 99999998665443
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.5e-11 Score=88.01 Aligned_cols=89 Identities=33% Similarity=0.451 Sum_probs=83.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
..-.+.+.+||=-||..+++.+|..+|-.||.|.+.++.-++.|..+++|+||.|.+..+++.||..+||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032319 108 DPAKSREAR 116 (143)
Q Consensus 108 ~~~~~~~~~ 116 (143)
...+++...
T Consensus 360 QLKRPkdan 368 (371)
T KOG0146|consen 360 QLKRPKDAN 368 (371)
T ss_pred hhcCccccC
Confidence 999877654
No 59
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=3.2e-10 Score=89.55 Aligned_cols=77 Identities=18% Similarity=0.365 Sum_probs=62.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCC------------CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPF------------GQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~------------g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 95 (143)
.......+|||+|||..+++++|+++|..+ +.|..+.+ ++.++||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 345567899999999999999999999864 23333333 3457899999999999999995 9
Q ss_pred CCceeCCeEEEEeeCC
Q 032319 96 NAKYLDGWVIFVDPAK 111 (143)
Q Consensus 96 ~~~~l~~~~l~v~~~~ 111 (143)
++..+.|..|+|....
T Consensus 243 ~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPH 258 (509)
T ss_pred CCeEeeCceeEecCcc
Confidence 9999999999997554
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.18 E-value=5e-11 Score=92.13 Aligned_cols=78 Identities=37% Similarity=0.626 Sum_probs=74.4
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 36 v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
+||+||.+++++++|+.+|.+||.|..+.+..+..||.++||+||+|.+.+.|..|++.||+..|-|+.|+|.....+
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 999999999999999999999999999999999889999999999999999999999999999999999999987644
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.17 E-value=1.5e-10 Score=80.82 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----hhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 32 TSPRLFVSGLSRLTTDEKLKE----AFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~----~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
+..++||.||+..+..++|+. +|++||+|.+|.... +.+.+|-|||.|.+.+.|-.|++.|+|..+.|..+++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999887 999999999987654 3778999999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
.|++.+.
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9998764
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=3e-10 Score=86.38 Aligned_cols=78 Identities=36% Similarity=0.623 Sum_probs=72.2
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCCCC
Q 032319 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSREA 115 (143)
Q Consensus 36 v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~~~ 115 (143)
|||.||+..++...|.++|+.||.|.+|++..+.. | ++|| ||+|.++++|.+|+..+||..+.+..|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999864 5 8999 9999999999999999999999999999988776544
Q ss_pred C
Q 032319 116 R 116 (143)
Q Consensus 116 ~ 116 (143)
+
T Consensus 156 r 156 (369)
T KOG0123|consen 156 R 156 (369)
T ss_pred h
Confidence 3
No 63
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1e-10 Score=83.73 Aligned_cols=83 Identities=27% Similarity=0.493 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCC--eEEEEe
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKY-LDG--WVIFVD 108 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-l~~--~~l~v~ 108 (143)
+.+++|||.|...-+|++++.+|..||.|.+|.+++..+ |.++||+||.|.+..+|+.||..||+.. +-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 668999999999999999999999999999999999865 9999999999999999999999999983 444 568888
Q ss_pred eCCCCCC
Q 032319 109 PAKSREA 115 (143)
Q Consensus 109 ~~~~~~~ 115 (143)
++...++
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 8876543
No 64
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.13 E-value=2.8e-10 Score=88.85 Aligned_cols=83 Identities=33% Similarity=0.510 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.-.+.+||.+|...+...+|+.+|++||+|.-.+++++..+...+||+||+..+.++|.+||..||...|.|+-|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 44579999999999999999999999999999999999888888999999999999999999999999999999999988
Q ss_pred CCC
Q 032319 111 KSR 113 (143)
Q Consensus 111 ~~~ 113 (143)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 754
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=5.4e-10 Score=82.38 Aligned_cols=82 Identities=21% Similarity=0.446 Sum_probs=72.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-eeCCe
Q 032319 25 IRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK-YLDGW 103 (143)
Q Consensus 25 ~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-~l~~~ 103 (143)
..+-.+....++||++|...+++.+|+++|-+||+|..+.++.. +++|||+|.+...|+.|...+-+. .|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 44556677789999999999999999999999999999998776 459999999999999998866555 68999
Q ss_pred EEEEeeCCC
Q 032319 104 VIFVDPAKS 112 (143)
Q Consensus 104 ~l~v~~~~~ 112 (143)
+|+|.++++
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999998
No 66
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.12 E-value=9.1e-10 Score=84.47 Aligned_cols=85 Identities=21% Similarity=0.340 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.....|||.|||.+++.++|+++|..||.|....|......++..+|+||+|.+.+.++.++.+ +...++++++.|+..
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 4445699999999999999999999999999987777653355559999999999999999996 677899999999998
Q ss_pred CCCCCC
Q 032319 111 KSREAR 116 (143)
Q Consensus 111 ~~~~~~ 116 (143)
+.....
T Consensus 365 ~~~~~g 370 (419)
T KOG0116|consen 365 RPGFRG 370 (419)
T ss_pred cccccc
Confidence 875433
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.08 E-value=4.7e-10 Score=81.09 Aligned_cols=78 Identities=24% Similarity=0.472 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
...+.+++|+||.+.++..+|+..|.+||.+.+|.|+.+ |+||.|.-.++|..|++.|++..+.|.+++|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 456789999999999999999999999999999999776 999999999999999999999999999999999
Q ss_pred CCCCCC
Q 032319 110 AKSREA 115 (143)
Q Consensus 110 ~~~~~~ 115 (143)
+.++..
T Consensus 147 stsrlr 152 (346)
T KOG0109|consen 147 STSRLR 152 (346)
T ss_pred eccccc
Confidence 876643
No 68
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.05 E-value=3.3e-10 Score=83.95 Aligned_cols=84 Identities=39% Similarity=0.623 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
...++||++|++.++++.|++.|.+||++.+|.+++++.++.+++|+||+|.+.+...+++. ...+.|.++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 77899999999999999999999999999999999999999999999999998888888877 36788999999999888
Q ss_pred CCCCC
Q 032319 112 SREAR 116 (143)
Q Consensus 112 ~~~~~ 116 (143)
+....
T Consensus 84 ~r~~~ 88 (311)
T KOG4205|consen 84 SREDQ 88 (311)
T ss_pred Ccccc
Confidence 76543
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=1.8e-09 Score=80.11 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.....|||++||..+++++++++|.+||.|..+.++.+..++..++|+||.|.+++.+..++. ..-+.|.++.+.|..+
T Consensus 95 ~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 95 LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRA 173 (311)
T ss_pred cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeec
Confidence 356799999999999999999999999999999999999999999999999999999999887 4778999999999999
Q ss_pred CCCCCCCC
Q 032319 111 KSREARPP 118 (143)
Q Consensus 111 ~~~~~~~~ 118 (143)
.++....+
T Consensus 174 ~pk~~~~~ 181 (311)
T KOG4205|consen 174 IPKEVMQS 181 (311)
T ss_pred cchhhccc
Confidence 98765443
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=1.2e-09 Score=81.35 Aligned_cols=110 Identities=18% Similarity=0.336 Sum_probs=88.5
Q ss_pred hhHHHHHhccCccccccccCCCC---------CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCc
Q 032319 4 ASSFRRALSSGSSILKSQLGSIR---------YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRS 74 (143)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~ 74 (143)
.+++...+..++++-.+.+...- ..+...-.+|||..+..+.++++|+..|+.||+|.+|.+-+....+.+
T Consensus 172 lEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 172 LEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred HHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 34455555556655443332111 223455689999999999999999999999999999999999888899
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 75 KGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 75 ~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
+||+|++|.+..+...|+..+|-..|+|.-++|..+...
T Consensus 252 kGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 252 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred cceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 999999999999999999999989999999999877643
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=1.5e-09 Score=87.08 Aligned_cols=78 Identities=22% Similarity=0.376 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKS 112 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~ 112 (143)
++|||||.|+..+++.+|..+|+.||+|.+|.+... ++||||......+|++|+..|.++.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 379999999999999999999999999999988654 67999999999999999999999999999999999986
Q ss_pred CCCC
Q 032319 113 REAR 116 (143)
Q Consensus 113 ~~~~ 116 (143)
+-.+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 6444
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.2e-09 Score=80.19 Aligned_cols=74 Identities=30% Similarity=0.427 Sum_probs=68.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
..+||| +.+++..|.+.|+.+|.+.+++++++. | +.|||||.|.+..+|++||..+|...+.|+++++.++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368888 889999999999999999999999997 5 9999999999999999999999999999999999998643
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=1.1e-09 Score=87.03 Aligned_cols=81 Identities=26% Similarity=0.461 Sum_probs=75.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKS 112 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~ 112 (143)
...|+|.|||+..+-.+++.+|..||++.+++|......+.++|||||+|-+..+|.+|+++|...-|.|++|.++|+..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 57999999999999999999999999999999988866678899999999999999999999998889999999999986
Q ss_pred C
Q 032319 113 R 113 (143)
Q Consensus 113 ~ 113 (143)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 4
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.90 E-value=4.4e-09 Score=79.95 Aligned_cols=78 Identities=31% Similarity=0.436 Sum_probs=70.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.......++|+|.|||+.+||..|++-|..||.+....|+.. |++++ .|.|.++++|+.|+..+++..|.++.|+
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 345677889999999999999999999999999998888554 66776 8999999999999999999999999999
Q ss_pred Eee
Q 032319 107 VDP 109 (143)
Q Consensus 107 v~~ 109 (143)
|.+
T Consensus 605 V~y 607 (608)
T KOG4212|consen 605 VTY 607 (608)
T ss_pred eee
Confidence 987
No 75
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.88 E-value=1.4e-08 Score=72.65 Aligned_cols=85 Identities=25% Similarity=0.401 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
........+||+|+.+.++.+++...|..||.+..+.+..++.++..++|+||+|.+.+..+.++. |++..+.++.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 456778999999999999999999999999999999999999988899999999999999999999 8999999999999
Q ss_pred eeCCCC
Q 032319 108 DPAKSR 113 (143)
Q Consensus 108 ~~~~~~ 113 (143)
.+.+..
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 987754
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.88 E-value=1.7e-08 Score=72.42 Aligned_cols=83 Identities=37% Similarity=0.424 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
+....+|+|.|||..+.+++|+++|..||.+..+.+..+. .|.+.|.|-|.|...++|.+|++.+++..+.|+.+++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445789999999999999999999999988888777774 599999999999999999999999999999999999987
Q ss_pred CCCC
Q 032319 110 AKSR 113 (143)
Q Consensus 110 ~~~~ 113 (143)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6644
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=2.5e-08 Score=79.52 Aligned_cols=78 Identities=28% Similarity=0.442 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATG---RSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.++||.||++.++.+.+...|...|.|..+.|...+.-. .+.||+||+|.+.++|+.|++.|+++.|.|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999998887765421 24599999999999999999999999999999999999
Q ss_pred C
Q 032319 111 K 111 (143)
Q Consensus 111 ~ 111 (143)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 8
No 78
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.80 E-value=6.2e-08 Score=77.44 Aligned_cols=84 Identities=23% Similarity=0.371 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRA---TGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
-...+..+||+||+..+++++|...|..||.+..++|++.+. ....+.|+||.|-+..++++|++.|++..+.++.+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 356778999999999999999999999999999999998753 23455699999999999999999999999999999
Q ss_pred EEeeCCC
Q 032319 106 FVDPAKS 112 (143)
Q Consensus 106 ~v~~~~~ 112 (143)
++.+++.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9999864
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.79 E-value=1.9e-07 Score=65.56 Aligned_cols=85 Identities=24% Similarity=0.249 Sum_probs=65.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEee-cCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVIT-DRATGRSKGFGFVSYTSIEEAERAREGMNAKYL---DGWV 104 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~-~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l---~~~~ 104 (143)
+....+++||.+||.++.-.+|..+|..|.--+.+.|.. .+..+..+.++|++|.+...|.+|+..|||..+ .+..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 445679999999999999999999999886443332222 212233457999999999999999999999965 4677
Q ss_pred EEEeeCCCC
Q 032319 105 IFVDPAKSR 113 (143)
Q Consensus 105 l~v~~~~~~ 113 (143)
|+++.+++-
T Consensus 110 LhiElAKSN 118 (284)
T KOG1457|consen 110 LHIELAKSN 118 (284)
T ss_pred eEeeehhcC
Confidence 888888753
No 80
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.69 E-value=2.7e-08 Score=70.85 Aligned_cols=86 Identities=33% Similarity=0.488 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
+-.....+||+|.|...++++.|-..|.+|-....-++++++.||+++||+||.|.+.+++..|++.+++..++.++|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 34556689999999999999999999999877777788999999999999999999999999999999999999999988
Q ss_pred eeCCCC
Q 032319 108 DPAKSR 113 (143)
Q Consensus 108 ~~~~~~ 113 (143)
+.+.-+
T Consensus 265 RkS~wk 270 (290)
T KOG0226|consen 265 RKSEWK 270 (290)
T ss_pred hhhhHH
Confidence 765533
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=3.4e-08 Score=69.49 Aligned_cols=72 Identities=24% Similarity=0.516 Sum_probs=65.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
..+||++||+.+.+.+|..+|..||++..+.+. .+|+||+|.+..+|..|+..|++..|.+..+.|++++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 468999999999999999999999999988773 348899999999999999999999999999999998854
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=1.9e-08 Score=78.23 Aligned_cols=72 Identities=24% Similarity=0.428 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.....+|+|-|||..++.++|+.+|+.||+|..++.... ..+.+||+|.|..+|++|++.|++..+.+++++
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 566789999999999999999999999999999776554 468999999999999999999999999999888
No 83
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.62 E-value=3.6e-07 Score=70.41 Aligned_cols=84 Identities=24% Similarity=0.301 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.......|-+.+||+++|+++|++||+.++ |..+.+.+. +|+..|-|||+|.++++++.|++. +...+..+-|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 445667888999999999999999999987 877666554 699999999999999999999994 8788999999999
Q ss_pred eCCCCCCC
Q 032319 109 PAKSREAR 116 (143)
Q Consensus 109 ~~~~~~~~ 116 (143)
.+..++..
T Consensus 82 ~~~~~e~d 89 (510)
T KOG4211|consen 82 TAGGAEAD 89 (510)
T ss_pred ccCCcccc
Confidence 98776543
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.61 E-value=7.5e-07 Score=55.38 Aligned_cols=79 Identities=20% Similarity=0.217 Sum_probs=66.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcC--CCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAP--FGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD----GWVIFV 107 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~--~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~----~~~l~v 107 (143)
++|.|.|||...+.++|.+++.. .|....+-+..+..++-+.|||||.|.+.+.+..-.+..+|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999888875 356666778888888889999999999999999999999999765 456677
Q ss_pred eeCCC
Q 032319 108 DPAKS 112 (143)
Q Consensus 108 ~~~~~ 112 (143)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77653
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.55 E-value=4.6e-07 Score=67.17 Aligned_cols=83 Identities=25% Similarity=0.321 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLV--------YSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD 101 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~ 101 (143)
......|||.|||..+|.+++..+|++||-|. .|+|-++.. |+-+|=|++.|...++..-|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45566799999999999999999999999663 367777754 899999999999999999999999999999
Q ss_pred CeEEEEeeCCCC
Q 032319 102 GWVIFVDPAKSR 113 (143)
Q Consensus 102 ~~~l~v~~~~~~ 113 (143)
|+.|+|+.++=.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999998744
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=7.5e-08 Score=67.36 Aligned_cols=80 Identities=16% Similarity=0.126 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.....+|||+|+...++++.|.++|.+-|.|.++.|...++ ++.+ ||||.|.++....-|+..+|+..+.+..+.+..
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 45567999999999999999999999999999998877765 5555 999999999999999999999999998888876
Q ss_pred CC
Q 032319 110 AK 111 (143)
Q Consensus 110 ~~ 111 (143)
-.
T Consensus 84 r~ 85 (267)
T KOG4454|consen 84 RC 85 (267)
T ss_pred cc
Confidence 44
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.43 E-value=1.5e-06 Score=65.83 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 33 SPRLFVSGLSRL-TTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 33 ~~~v~v~~l~~~-~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
...+-|.||... ++.+.|..+|+.||+|.+++|+.++. --|+|.|.|...|+-|+..|+++.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 567888888776 99999999999999999999999863 369999999999999999999999999999999988
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
-+
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=8.8e-07 Score=69.31 Aligned_cols=86 Identities=30% Similarity=0.482 Sum_probs=79.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+........+||++||...++.++++++..||.+....++.+..+|.+++|||-+|.+......|+..|||..+++..+.
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 44566778999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeeCCC
Q 032319 107 VDPAKS 112 (143)
Q Consensus 107 v~~~~~ 112 (143)
|..+..
T Consensus 363 vq~A~~ 368 (500)
T KOG0120|consen 363 VQRAIV 368 (500)
T ss_pred eehhhc
Confidence 998764
No 89
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.30 E-value=7.5e-06 Score=49.15 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=47.2
Q ss_pred CeEEEcCCCCCCCHHHH----HHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 34 PRLFVSGLSRLTTDEKL----KEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l----~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
..++|.|||...+...| +.++.-+| +|..+. .+.|+|.|.+.+.|.+|.+.+++-.+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46899999999888765 45555665 665541 3589999999999999999999999999999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98643
No 90
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.29 E-value=3.7e-06 Score=62.48 Aligned_cols=85 Identities=20% Similarity=0.356 Sum_probs=68.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHH----H--HHhhcCCCCeeEEEEeecCCCCC-cc--cEEEEEeCCHHHHHHHHHHhCCce
Q 032319 29 STLTSPRLFVSGLSRLTTDEK----L--KEAFAPFGQLVYSKVITDRATGR-SK--GFGFVSYTSIEEAERAREGMNAKY 99 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~----l--~~~f~~~g~i~~~~l~~~~~~~~-~~--g~afv~f~~~~~a~~a~~~l~~~~ 99 (143)
-..+..-+||-+|+..+..++ | .++|.+||+|..+.+.....+-. .. -..||+|...++|.+||..+++..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 456778899999999876654 2 68999999999988766542211 11 234999999999999999999999
Q ss_pred eCCeEEEEeeCCCC
Q 032319 100 LDGWVIFVDPAKSR 113 (143)
Q Consensus 100 l~~~~l~v~~~~~~ 113 (143)
++|+.|+..|...+
T Consensus 190 ~DGr~lkatYGTTK 203 (480)
T COG5175 190 LDGRVLKATYGTTK 203 (480)
T ss_pred ccCceEeeecCchH
Confidence 99999999998765
No 91
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.21 E-value=1.2e-06 Score=65.33 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFG--QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g--~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.......+|||||-+++++++|.+.+...| ++.++++..++.+|.++|||+|...+....++.++.|..+.|.|..-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 345556899999999999999999988766 778889999998999999999999999999999999999999887655
Q ss_pred EeeCC
Q 032319 107 VDPAK 111 (143)
Q Consensus 107 v~~~~ 111 (143)
|-...
T Consensus 156 V~~~N 160 (498)
T KOG4849|consen 156 VLSYN 160 (498)
T ss_pred eeccc
Confidence 55443
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.19 E-value=9.2e-06 Score=62.87 Aligned_cols=80 Identities=24% Similarity=0.219 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.....|-+.+||+.+++++|.+||+..--+....++.....+++.|-|||.|++.+.|++|+.. |...|..+-|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4567899999999999999999999875333322233334578999999999999999999986 777788888888766
Q ss_pred C
Q 032319 111 K 111 (143)
Q Consensus 111 ~ 111 (143)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 5
No 93
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.09 E-value=9.5e-06 Score=60.55 Aligned_cols=85 Identities=28% Similarity=0.296 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLV--------YSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD 101 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~ 101 (143)
.....+|||.+||..+++++|..+|.+++.|. .+.|-+++.|++.++-|.|.|.+...|++|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 56667999999999999999999999998763 2556677789999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCC
Q 032319 102 GWVIFVDPAKSRE 114 (143)
Q Consensus 102 ~~~l~v~~~~~~~ 114 (143)
+..|+|..+..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998887554
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.02 E-value=6.1e-06 Score=58.15 Aligned_cols=65 Identities=20% Similarity=0.357 Sum_probs=53.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD 101 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~ 101 (143)
-.++||.||..+++++.|+.+|..|.....++|... ...+.||++|++.+.|..|+..|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 368999999999999999999999876655555433 23468999999999999999999987653
No 95
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.95 E-value=4.1e-06 Score=65.45 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.+....++|+.-+...++..+|.+||+.+|+|..+.++.++.++.++|.+||+|.+......||. |.|..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 34555789999999899999999999999999999999999999999999999999999999996 89999999999998
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
.....
T Consensus 254 ~sEae 258 (549)
T KOG0147|consen 254 LSEAE 258 (549)
T ss_pred ccHHH
Confidence 76643
No 96
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.95 E-value=6.8e-05 Score=52.83 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEe
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD-GWVIFVD 108 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~-~~~l~v~ 108 (143)
..+...+++.|||..++.+.+..+|.+|.....++++... .+.|||+|.+...+..|...+++..+. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 5566789999999999999999999999888888887763 569999999999999999999998776 7888887
Q ss_pred eCC
Q 032319 109 PAK 111 (143)
Q Consensus 109 ~~~ 111 (143)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 764
No 97
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.94 E-value=1e-05 Score=59.85 Aligned_cols=83 Identities=25% Similarity=0.424 Sum_probs=74.4
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 30 TLTSPRLF-VSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 30 ~~~~~~v~-v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++| ++++++.+++++|+.+|..+|.|..+++.....++...++++|.|.+...+..++.. +...+.++++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34455666 999999999999999999999999999999999999999999999999999999887 7888999999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
+....
T Consensus 260 ~~~~~ 264 (285)
T KOG4210|consen 260 EDEPR 264 (285)
T ss_pred cCCCC
Confidence 88754
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.93 E-value=4.1e-05 Score=48.42 Aligned_cols=58 Identities=33% Similarity=0.503 Sum_probs=38.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNA 97 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 97 (143)
..|+|.+++..++.++|+..|..||.|..|.+.... ..|+|.|.+.+.|+.|+..+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHh
Confidence 467888899999999999999999999999886653 3899999999999999986643
No 99
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.86 E-value=7.4e-05 Score=60.36 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=63.9
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCe-eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 35 RLFVSGLSRLTTDEKLKEAFAPFGQL-VYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 35 ~v~v~~l~~~~~~~~l~~~f~~~g~i-~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.|-+.|+|+.++-++|.+||..|-.+ -+|.+-.+ +.|...|-|.|-|++.++|.+|...|++..|.++.+.+..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 77788999999999999999999744 34444444 5699999999999999999999999999999999998864
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=7.3e-05 Score=58.32 Aligned_cols=68 Identities=26% Similarity=0.347 Sum_probs=61.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhc-CCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFA-PFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~-~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 94 (143)
....++.+|||||+||..++.++|..+|. -||.|+.+-|-++..-+..+|-+-|+|.+..+..+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 33567789999999999999999999999 599999999999987899999999999999999999874
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.78 E-value=2.2e-05 Score=55.48 Aligned_cols=74 Identities=34% Similarity=0.520 Sum_probs=63.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....+.+.|.+++..+.+.+|...|..+|++....+ ..+++||.|+...++..|+..|++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 455678999999999999999999999998744333 345899999999999999999999999999999954
Q ss_pred CC
Q 032319 110 AK 111 (143)
Q Consensus 110 ~~ 111 (143)
.-
T Consensus 168 ~~ 169 (216)
T KOG0106|consen 168 NS 169 (216)
T ss_pred cC
Confidence 43
No 102
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.64 E-value=0.00019 Score=54.73 Aligned_cols=77 Identities=25% Similarity=0.254 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCe-eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEe
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQL-VYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW-VIFVD 108 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i-~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~-~l~v~ 108 (143)
.+..++++.|+|..+++++++.+|..-|.. ...++ -++.+.++++.+++.++|-.|+..++++.++.. .++|+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf-----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF-----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee-----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEE
Confidence 556799999999999999999999986644 44443 244566999999999999999999999988664 89999
Q ss_pred eCCC
Q 032319 109 PAKS 112 (143)
Q Consensus 109 ~~~~ 112 (143)
++++
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 8875
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.61 E-value=0.00021 Score=39.48 Aligned_cols=52 Identities=33% Similarity=0.462 Sum_probs=40.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAR 92 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~ 92 (143)
+.|-|.+.+....+. +..+|..||+|..+.+.. ...+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 456788888766544 556888999999987742 2459999999999999984
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.56 E-value=0.0027 Score=48.25 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=71.3
Q ss_pred CCCCCCCCeEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 27 YNSTLTSPRLFVSGLSRL-TTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~-~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
+....+.+.+.|-+|... ++.+.|.++|-.||.|+.++++..+ .|-|.|+..+..+.++|+..|++..+-|.+|
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 345567788899999987 6667799999999999999998875 4689999999999999999999999999999
Q ss_pred EEeeCCCC
Q 032319 106 FVDPAKSR 113 (143)
Q Consensus 106 ~v~~~~~~ 113 (143)
.|+.++-.
T Consensus 356 ~v~~SkQ~ 363 (494)
T KOG1456|consen 356 NVCVSKQN 363 (494)
T ss_pred EEeecccc
Confidence 99988743
No 105
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.47 E-value=6.8e-05 Score=53.80 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=61.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCC--------CCcc----cEEEEEeCCHHHHHHHHHHhCCce
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRAT--------GRSK----GFGFVSYTSIEEAERAREGMNAKY 99 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~--------~~~~----g~afv~f~~~~~a~~a~~~l~~~~ 99 (143)
....||+++||+.+...-|+++|+.||+|-.+.|.....+ |.+. .-++|+|.+-..|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999998888776554 2222 246889999999999999999999
Q ss_pred eCCeE
Q 032319 100 LDGWV 104 (143)
Q Consensus 100 l~~~~ 104 (143)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 106
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.42 E-value=0.001 Score=41.67 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=49.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEE-EeecC------CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSK-VITDR------ATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV 104 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~-l~~~~------~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~ 104 (143)
....|.|-+.|.. ....+..+|++||.|.+.. +.... .......|-.|.|.+..+|.+||.. ||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3455778888887 4567889999999987653 10000 0012345999999999999999995 999998754
Q ss_pred -EEEeeC
Q 032319 105 -IFVDPA 110 (143)
Q Consensus 105 -l~v~~~ 110 (143)
+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 445555
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.37 E-value=0.006 Score=46.39 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=59.7
Q ss_pred cCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEeeCCCCC
Q 032319 39 SGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG--WVIFVDPAKSRE 114 (143)
Q Consensus 39 ~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~--~~l~v~~~~~~~ 114 (143)
-|--+.++.+.|..+....|+|..+.|.... .--|.|+|++.+.|++|-..|||..|.. +.|+|+++++.+
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 3555568888999999999999999887762 3479999999999999999999998755 679999999764
No 108
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0013 Score=52.20 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=61.9
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-CCe
Q 032319 31 LTSPRLFVSGLSRLTTD------EKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL-DGW 103 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~------~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l-~~~ 103 (143)
.....|+|.|+|.--.. ..|..+|+++|++..+.+..+.. |..+||.|++|.+...|+.|++.|||+.| .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44468889999874322 23678899999999998887765 55999999999999999999999999976 456
Q ss_pred EEEEee
Q 032319 104 VIFVDP 109 (143)
Q Consensus 104 ~l~v~~ 109 (143)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 665554
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.0015 Score=51.66 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=52.7
Q ss_pred HHHHhhcCCCCeeEEEEeecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 49 KLKEAFAPFGQLVYSKVITDR---ATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 49 ~l~~~f~~~g~i~~~~l~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
+++.-+++||.|..|.+.+.. ......|-.||+|.+.+++++|+..|.|.++.++.+...|..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 466777889999999888772 123456678999999999999999999999999999998865
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.23 E-value=0.00065 Score=51.60 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-CeeE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFG-QLVY--SKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g-~i~~--~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
...-.|-+++||+..+.++|..||..|. .|.. +.++.+. .|...|-|||++.+.+.|..|....+++....+-|.|
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 3366899999999999999999999886 3333 5566653 4889999999999999999999999998888999998
Q ss_pred eeCCCC
Q 032319 108 DPAKSR 113 (143)
Q Consensus 108 ~~~~~~ 113 (143)
..+...
T Consensus 357 fp~S~e 362 (508)
T KOG1365|consen 357 FPCSVE 362 (508)
T ss_pred eeccHH
Confidence 877643
No 111
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.11 E-value=0.0029 Score=43.69 Aligned_cols=66 Identities=26% Similarity=0.387 Sum_probs=57.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL 100 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l 100 (143)
.+..+...|.|.+||...++.+|+++...-|+++...+.++ +.+.|+|...++.+-|+..|....+
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 34556679999999999999999999999999998887666 3789999999999999999987754
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0034 Score=49.27 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=49.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC---CCCCccc---EEEEEeCCHHHHHHHHHHhC
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDR---ATGRSKG---FGFVSYTSIEEAERAREGMN 96 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~---~~~~~~g---~afv~f~~~~~a~~a~~~l~ 96 (143)
...-.+.||||+||+.++|+.|...|..||.+. +.+.... .-...+| |+|+.|+++......+.++.
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 345568999999999999999999999999542 2222111 1122455 99999999999888887654
No 113
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.98 E-value=0.0023 Score=49.26 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=58.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeec---CCC--CC--------cccEEEEEeCCHHHHHHHHH
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITD---RAT--GR--------SKGFGFVSYTSIEEAERARE 93 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~---~~~--~~--------~~g~afv~f~~~~~a~~a~~ 93 (143)
+..+.+.++|.+.|||.+-.-+-|.++|+.+|.|..|+|+.. ... +. .+-+|+|+|...+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 445678999999999999777889999999999999999876 221 11 24589999999999999998
Q ss_pred HhCC
Q 032319 94 GMNA 97 (143)
Q Consensus 94 ~l~~ 97 (143)
.++.
T Consensus 305 ~~~~ 308 (484)
T KOG1855|consen 305 LLNP 308 (484)
T ss_pred hhch
Confidence 7743
No 114
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.97 E-value=0.0069 Score=34.45 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=44.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCC---CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPF---GQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM 95 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~---g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 95 (143)
.+...|+|.++.. ++-++|+.+|..| .....+.+.-+. -|-|.|.+...|.+|+..|
T Consensus 3 ~rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4567899999976 5557789999887 135677777664 5788899999999998764
No 115
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.89 E-value=0.0068 Score=45.54 Aligned_cols=83 Identities=19% Similarity=0.273 Sum_probs=62.8
Q ss_pred CCCCCCCCCeEEEcCCCCC----CC-------HHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 032319 26 RYNSTLTSPRLFVSGLSRL----TT-------DEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94 (143)
Q Consensus 26 ~~~~~~~~~~v~v~~l~~~----~~-------~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 94 (143)
++.-....++|.+.|+-.. .+ .++|++-..+||.|..+.+.-.. +.|.+-|.|.+.++|..||..
T Consensus 258 ~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~ 333 (382)
T KOG1548|consen 258 DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQT 333 (382)
T ss_pred ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHH
Confidence 3444556678888876431 22 13456667789999998775433 467999999999999999999
Q ss_pred hCCceeCCeEEEEeeCCC
Q 032319 95 MNAKYLDGWVIFVDPAKS 112 (143)
Q Consensus 95 l~~~~l~~~~l~v~~~~~ 112 (143)
|+|..+.|+.|.......
T Consensus 334 m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 334 MDGRWFDGRQLTASIWDG 351 (382)
T ss_pred hcCeeecceEEEEEEeCC
Confidence 999999999999887553
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.83 E-value=0.0015 Score=52.16 Aligned_cols=78 Identities=26% Similarity=0.267 Sum_probs=63.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcC-CCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAP-FGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL---DGWV 104 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~-~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l---~~~~ 104 (143)
-...+..|||.||-.-+|.-+|+.++.. +|.|...+| .+-+..|||.|.+.++|.....+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 4566789999999999999999999995 667777644 33466899999999999999999999954 4567
Q ss_pred EEEeeCCC
Q 032319 105 IFVDPAKS 112 (143)
Q Consensus 105 l~v~~~~~ 112 (143)
|-+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 77777654
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.71 E-value=0.0038 Score=52.03 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=67.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG--WVIF 106 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~--~~l~ 106 (143)
....+..+|++++..++....|...|..||.|..|.+-.. ..|++|.|++...++.|++.+.+..+++ +++.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4566789999999999999999999999999988776332 4599999999999999999999998877 6677
Q ss_pred EeeCCC
Q 032319 107 VDPAKS 112 (143)
Q Consensus 107 v~~~~~ 112 (143)
|.++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 777764
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.70 E-value=0.0029 Score=48.26 Aligned_cols=75 Identities=12% Similarity=0.224 Sum_probs=58.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRAT---GRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
..|.|.||.+.++.++++.+|.-.|+|.++.|...... ....-.|||.|.+...+..|.. |-+..+-++.|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 38999999999999999999999999999988764321 2234589999999999988877 566665565555543
No 119
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.64 E-value=0.0008 Score=50.16 Aligned_cols=84 Identities=18% Similarity=0.293 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHH---HHhhcCCCCeeEEEEeecCC--C-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 30 TLTSPRLFVSGLSRLTTDEKL---KEAFAPFGQLVYSKVITDRA--T-GRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l---~~~f~~~g~i~~~~l~~~~~--~-~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
......+||-+|+.....+.+ ...|.+||.|..+.+..+.. . -....-++|+|...++|..||...++..+.++
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 456678899999988665544 56788999999998877551 1 12233479999999999999999999999999
Q ss_pred EEEEeeCCCC
Q 032319 104 VIFVDPAKSR 113 (143)
Q Consensus 104 ~l~v~~~~~~ 113 (143)
.++.++...+
T Consensus 154 ~lka~~gttk 163 (327)
T KOG2068|consen 154 ALKASLGTTK 163 (327)
T ss_pred hhHHhhCCCc
Confidence 8888877654
No 120
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.63 E-value=0.013 Score=39.00 Aligned_cols=55 Identities=18% Similarity=0.344 Sum_probs=43.9
Q ss_pred HHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q 032319 49 KLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKS 112 (143)
Q Consensus 49 ~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~ 112 (143)
+|.+.|..||.+.-+++..+ .-+|+|.+-..|-+|+. +++..++|+.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 56778888998877776554 46999999999999999 799999999999998764
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.63 E-value=0.0095 Score=43.97 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=51.6
Q ss_pred HHHHHhhcCCCCeeEEEEeecCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 48 EKLKEAFAPFGQLVYSKVITDRATGRS-KGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 48 ~~l~~~f~~~g~i~~~~l~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
++++....+||+|..|.|......... .---||+|+..++|.+|+..|||..++|+.+..++..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 357888899999998887776432222 2356999999999999999999999999999888754
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.61 E-value=0.0019 Score=53.36 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
....++|.|.|+..|.+.++.++...|.+....++..+ .|+.+|.|+|.|.++.++.+++...+...+....+.|..+.
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 35789999999999999999999999999888877775 49999999999999999999988777666666666666644
Q ss_pred C
Q 032319 112 S 112 (143)
Q Consensus 112 ~ 112 (143)
+
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 3
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.58 E-value=0.027 Score=33.93 Aligned_cols=59 Identities=17% Similarity=0.313 Sum_probs=42.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNA 97 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 97 (143)
+.+....||+ +|..+...+|.++|+.||.|. +.++.+. -|||.....+.+..++..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3455667776 999999999999999999753 3333332 799999999999999988764
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.51 E-value=0.0014 Score=47.23 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=50.4
Q ss_pred HHHHhhc-CCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 49 KLKEAFA-PFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 49 ~l~~~f~-~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
++...|. +||+|..+.+..+.. --..|=++|.|..+++|++|+..||+..+.|++|......-+
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 3444455 799998886655432 334567899999999999999999999999999999887644
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.50 E-value=0.004 Score=50.75 Aligned_cols=86 Identities=15% Similarity=0.024 Sum_probs=69.3
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 032319 26 RYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVY-SKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV 104 (143)
Q Consensus 26 ~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~-~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~ 104 (143)
.+.....+..|||..||..+++..+.++|.....|++ |.|... .+++..+.|||.|..++++..|...-+.+.++.+.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ 505 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRI 505 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceE
Confidence 3455667789999999999999999999998766777 444444 56888999999999988888887766777788899
Q ss_pred EEEeeCCC
Q 032319 105 IFVDPAKS 112 (143)
Q Consensus 105 l~v~~~~~ 112 (143)
|+|.....
T Consensus 506 irv~si~~ 513 (944)
T KOG4307|consen 506 IRVDSIAD 513 (944)
T ss_pred EEeechhh
Confidence 99986543
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.42 E-value=0.0086 Score=45.72 Aligned_cols=76 Identities=22% Similarity=0.202 Sum_probs=56.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcC-C---CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAP-F---GQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~-~---g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
-.|-.++||+++++.++..||.. + |....+.++... .|+..|-||+.|..+++|+.|+.+ |...++-+-|.+..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 34556799999999999999973 2 234555555553 488999999999999999999986 66666666555554
Q ss_pred CC
Q 032319 110 AK 111 (143)
Q Consensus 110 ~~ 111 (143)
+.
T Consensus 240 ST 241 (508)
T KOG1365|consen 240 ST 241 (508)
T ss_pred Hh
Confidence 43
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.09 E-value=0.0057 Score=47.23 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=58.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEeeCCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK-YLDGWVIFVDPAKS 112 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-~l~~~~l~v~~~~~ 112 (143)
..+|++||.+..+..+|..+|..---...-.++. ..||+||++.+..-|.+|++.++++ .+.|.++.+....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997531111111222 1369999999999999999999988 59999999998876
Q ss_pred CCC
Q 032319 113 REA 115 (143)
Q Consensus 113 ~~~ 115 (143)
+..
T Consensus 76 kkq 78 (584)
T KOG2193|consen 76 KKQ 78 (584)
T ss_pred HHH
Confidence 643
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.57 E-value=0.00074 Score=55.71 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
...++|++||+..+.+.+|...|..+|.+..+.+......+..+|.|++.|.....+.+|+...+...++...+-|+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g 743 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISG 743 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeC
Confidence 346889999999999999999999999777666655556688999999999999999999987666666555444443
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.45 E-value=0.035 Score=38.31 Aligned_cols=83 Identities=12% Similarity=0.180 Sum_probs=50.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcC-CCCe---eEEE--EeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAP-FGQL---VYSK--VITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG-- 102 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~-~g~i---~~~~--l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~-- 102 (143)
.....|.|+.||+.++++++...+.. ++.- ..+. ............-|||.|.+.+++..-...++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44568999999999999998887776 6544 3333 22222222345578999999999999999999986543
Q ss_pred ---eEEEEeeCCCC
Q 032319 103 ---WVIFVDPAKSR 113 (143)
Q Consensus 103 ---~~l~v~~~~~~ 113 (143)
.+..|+++.-+
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 44566666543
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.19 E-value=0.0064 Score=50.77 Aligned_cols=82 Identities=15% Similarity=0.204 Sum_probs=69.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
....+.++|++||+..+++.+|+..|..+|.+.++.|-+... +.-.-++||.|.+-..+..|.-.+.+..|....+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 456678999999999999999999999999999998877643 4445599999999888888888888888888777777
Q ss_pred eCC
Q 032319 109 PAK 111 (143)
Q Consensus 109 ~~~ 111 (143)
+..
T Consensus 447 lG~ 449 (975)
T KOG0112|consen 447 LGQ 449 (975)
T ss_pred ccc
Confidence 774
No 131
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.17 E-value=0.46 Score=30.24 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=47.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG 102 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~ 102 (143)
..+.+...|..+..++|..+.+.+- .|..++|.++. ..++-.+++.|.+...|..-...+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344444555566666766656554 67788888873 3466788999999999999999999995443
No 132
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.93 E-value=0.32 Score=28.01 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=42.5
Q ss_pred CCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 44 LTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 44 ~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
.++-.+++..+..|+ +..+. .++ + .=||.|.+..+|++|....++..+-+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 367789999999987 44443 332 2 4589999999999999999998887777654
No 133
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.66 E-value=0.047 Score=42.81 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=59.4
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 31 LTSPRLFVSGLSRL-TTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 31 ~~~~~v~v~~l~~~-~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
...+.+-+...++. -+.++|...|.+||.|..|.+-.. .--|.|+|.+..+|..|.. .++..|.++.|+|.+
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEE
Confidence 34445555556665 456789999999999999876443 3478999999999988877 588999999999999
Q ss_pred CCCC
Q 032319 110 AKSR 113 (143)
Q Consensus 110 ~~~~ 113 (143)
-.+.
T Consensus 443 hnps 446 (526)
T KOG2135|consen 443 HNPS 446 (526)
T ss_pred ecCC
Confidence 7763
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.62 E-value=0.079 Score=42.45 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=56.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcC--CCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCeE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAP--FGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK--YLDGWV 104 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~--~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~l~~~~ 104 (143)
.....+.|.++-||..+..++++.+|.. +-++..|.+-.+. -=||+|++..+|+.|.+.|... .+.|++
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3455678889999999999999999985 6677788775542 2489999999999999877543 466666
Q ss_pred EEEee
Q 032319 105 IFVDP 109 (143)
Q Consensus 105 l~v~~ 109 (143)
|..++
T Consensus 244 ImARI 248 (684)
T KOG2591|consen 244 IMARI 248 (684)
T ss_pred hhhhh
Confidence 55443
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.58 E-value=0.16 Score=35.28 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=45.1
Q ss_pred CHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEeeCCCC
Q 032319 46 TDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMN--AKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 46 ~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~l~~~~l~v~~~~~~ 113 (143)
....|+.+|..++.+..+..+.. .+-..|.|.+.+.|..|...|+ +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34678999999998888776654 3468899999999999999999 88999999999988543
No 136
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.54 E-value=0.047 Score=39.57 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=53.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMN 96 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 96 (143)
..|||.||...++.+.+...|+.||.|..-.+..+ ..++..+-++|.|.....+..|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999977655555 347888899999999999999998763
No 137
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.27 E-value=0.21 Score=37.24 Aligned_cols=67 Identities=24% Similarity=0.285 Sum_probs=47.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE-EEEeeC
Q 032319 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV-IFVDPA 110 (143)
Q Consensus 36 v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~-l~v~~~ 110 (143)
|-|-++|..- ...|..+|.+||.|.+.... .+..|-+|.|....+|++||.. ++..|.+.. |-|..+
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 3344666643 24578899999998776442 3345999999999999999995 888877643 445443
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.98 E-value=0.44 Score=31.80 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=49.7
Q ss_pred CCCCCeEEEcCCCCCCCH----HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 30 TLTSPRLFVSGLSRLTTD----EKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~----~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
+.+-.+|.|.=|..++.. ..+...++.||.|.++.++- +.-|.|.|.|..+|=.|+.+.+. ...|.-+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 445568888765555322 34556677899999987643 34799999999999999998765 3344445
Q ss_pred EEee
Q 032319 106 FVDP 109 (143)
Q Consensus 106 ~v~~ 109 (143)
.+.+
T Consensus 155 qCsW 158 (166)
T PF15023_consen 155 QCSW 158 (166)
T ss_pred Eeec
Confidence 5444
No 139
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.57 E-value=0.09 Score=44.07 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=63.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEeeCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKY--LDGWVIFVDPAK 111 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--l~~~~l~v~~~~ 111 (143)
.+.++.|.+-..+...|..++..||.+...+.+++. ..|.|.|...+.|-.|+++|+|+. +.|-+.+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 344555666677888899999999999999888874 389999999999999999999995 677889999988
Q ss_pred CCCCC
Q 032319 112 SREAR 116 (143)
Q Consensus 112 ~~~~~ 116 (143)
.....
T Consensus 373 ~~~~~ 377 (1007)
T KOG4574|consen 373 TLPMY 377 (1007)
T ss_pred ccccc
Confidence 65433
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.02 E-value=0.48 Score=37.97 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=42.3
Q ss_pred CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee----CCeEEEEeeCCCC
Q 032319 58 GQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL----DGWVIFVDPAKSR 113 (143)
Q Consensus 58 g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l----~~~~l~v~~~~~~ 113 (143)
|.-..+.+..+..+..+.|||||.|.+...+....++.||+.+ ......+.|++-+
T Consensus 414 gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 414 GTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred CccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 3334456666766777899999999999999999999999843 3355677777654
No 141
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.13 E-value=1.1 Score=35.18 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG 102 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~ 102 (143)
...|.|-.+|..++-.+|..|...+- .|..++++++. -.++=..+|.|.+.++|..-...+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999998764 78999999963 2234467999999999999999999996544
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.82 E-value=1.6 Score=25.41 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=33.4
Q ss_pred CCCHHHHHHhhcCCC-----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 44 LTTDEKLKEAFAPFG-----QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 44 ~~~~~~l~~~f~~~g-----~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.++..+|..++..-+ .|-.+.+... |+||+... +.+..++..|++..+.|++++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 466677777776543 4556666444 89998864 5788899999999999999999864
No 143
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.03 E-value=2.2 Score=31.77 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=38.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCH
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~ 85 (143)
..-..-|+++||+..+.-.+|+..+.+.+. ..+.|.+. .+.+-||+.|.+.
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCC-CceeEeee----cCCcceeEecCCc
Confidence 344567999999999999999999998763 23344443 3567899999664
No 144
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.69 E-value=0.41 Score=39.17 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=60.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 032319 25 IRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV 104 (143)
Q Consensus 25 ~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~ 104 (143)
+.........+|||+|+...+..+.++.++..+|.|..++. -.|+|-.|........|+..|....+.+..
T Consensus 32 p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr---------~~fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 32 PVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR---------DKFGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred ccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh---------hhhcccchhhHHHHHHHHHHhcccCCCcch
Confidence 33445567789999999999999999999999997765543 228899999999999999988877787777
Q ss_pred EEEee
Q 032319 105 IFVDP 109 (143)
Q Consensus 105 l~v~~ 109 (143)
+.+..
T Consensus 103 l~~~~ 107 (668)
T KOG2253|consen 103 LIENV 107 (668)
T ss_pred hhccc
Confidence 66554
No 145
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.02 E-value=2.8 Score=32.65 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 032319 24 SIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREG 94 (143)
Q Consensus 24 ~~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 94 (143)
.....+..-.+.|-|-++|.....++|...|..|+ ....|+++-+. .+|..|.+...|..|+-.
T Consensus 382 ~~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 382 PPLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred CCCCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 33344556778899999999988899999999886 45666666654 799999999999999874
No 146
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.29 E-value=0.039 Score=42.82 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEee-cCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVIT-DRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~-~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
...+.+-|.|+|...-++.+..++..||.+..|..+. +.. .-..-|+|...+.++.|++.|++..+.+..+++.|
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 3456789999999999999999999999988875422 221 12334678889999999999999999999999998
Q ss_pred CCC
Q 032319 110 AKS 112 (143)
Q Consensus 110 ~~~ 112 (143)
-.-
T Consensus 154 iPd 156 (584)
T KOG2193|consen 154 IPD 156 (584)
T ss_pred Cch
Confidence 764
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=86.31 E-value=0.47 Score=35.35 Aligned_cols=77 Identities=23% Similarity=0.107 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
...++|++++...+.+.....++..+|......+........+++++++.|...+.+..|+.....+.+.+..+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 46789999999999888888888888877666655555668899999999999999999998644445555444333
No 148
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=77.71 E-value=4.9 Score=23.33 Aligned_cols=63 Identities=19% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 48 EKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 48 ~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
++|++.|...| ++..+.-+...++......-+|+.....+... .|+=..|++.++.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 35677787777 67777777776666666677887765443333 34556789999999877644
No 149
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.57 E-value=26 Score=28.89 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=61.5
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhcCC----CCeeEEEEeecC----------CCCC---------------------
Q 032319 30 TLTSPRLFVSGLSRL-TTDEKLKEAFAPF----GQLVYSKVITDR----------ATGR--------------------- 73 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~-~~~~~l~~~f~~~----g~i~~~~l~~~~----------~~~~--------------------- 73 (143)
...+.+|-|.|+.|. +...+|..+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 466789999999998 8888999888865 578887765421 1222
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEeeCC
Q 032319 74 ----------------SKGFGFVSYTSIEEAERAREGMNAKYLDG--WVIFVDPAK 111 (143)
Q Consensus 74 ----------------~~g~afv~f~~~~~a~~a~~~l~~~~l~~--~~l~v~~~~ 111 (143)
..=||.|+|.+...|......++|..+.. ..+.+++..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 11289999999999999999999997654 556666654
No 150
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=73.11 E-value=9.8 Score=21.91 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=41.9
Q ss_pred HHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 48 EKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 48 ~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
++|.+.|...| .+..+.-+....++.....-||+.....+... .++=..|++..+.|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 35666777666 67777666665556667778888765444333 34456788999999887644
No 151
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=71.39 E-value=9 Score=21.74 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=16.5
Q ss_pred HHHHHhhcCCCCeeEEEEeec
Q 032319 48 EKLKEAFAPFGQLVYSKVITD 68 (143)
Q Consensus 48 ~~l~~~f~~~g~i~~~~l~~~ 68 (143)
.+|+.+|+..|+|.-+-+...
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 468999999999877665443
No 152
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.35 E-value=13 Score=23.82 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=32.3
Q ss_pred CeEEEcCCCCC---------CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeC-CHHHHHHHHHHhCCc
Q 032319 34 PRLFVSGLSRL---------TTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYT-SIEEAERAREGMNAK 98 (143)
Q Consensus 34 ~~v~v~~l~~~---------~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~-~~~~a~~a~~~l~~~ 98 (143)
.++.|-|++.. .+.+.|++.|+.|..+ +++.+.+. ..+.|+++|.|. +..-...|+. |+.+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~-l~~~ 79 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR-LEKH 79 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEET--TEEEEEEEEE--SSHHHHHHHHH-HHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCC--CCCcEEEEEEECCChHHHHHHHH-HHHH
Confidence 45556666432 3456789999988755 45555554 457899999996 5555666655 4444
No 153
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=69.61 E-value=12 Score=27.98 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=59.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC-------CCCCcccEEEEEeCCHHHHHH----HHHHh
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDR-------ATGRSKGFGFVSYTSIEEAER----AREGM 95 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~-------~~~~~~g~afv~f~~~~~a~~----a~~~l 95 (143)
-+++..++.+.+.|+...++-..+..-|..||.|+++.+..+. ...+......+.|-+.+.+-. .+.+|
T Consensus 9 GdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 9 GDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 4567888899999999989888888889999999999988875 122344567777876665433 22223
Q ss_pred CCc--eeCCeEEEEeeCC
Q 032319 96 NAK--YLDGWVIFVDPAK 111 (143)
Q Consensus 96 ~~~--~l~~~~l~v~~~~ 111 (143)
... .+....+.+.+..
T Consensus 89 sEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHhcCCcceeEEEEE
Confidence 222 4666677776654
No 154
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=54.53 E-value=12 Score=26.03 Aligned_cols=74 Identities=9% Similarity=0.090 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCCCCHH-----HHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 032319 33 SPRLFVSGLSRLTTDE-----KLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW-VIF 106 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~-----~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~-~l~ 106 (143)
..++.+..++..+..+ ....+|.+|.+...+.+++. .+..-|.|.+...|..|...++...+.+. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3445666666653322 34667777776655555443 34667899999999999999999999888 666
Q ss_pred EeeCCC
Q 032319 107 VDPAKS 112 (143)
Q Consensus 107 v~~~~~ 112 (143)
.-++..
T Consensus 84 ~yfaQ~ 89 (193)
T KOG4019|consen 84 LYFAQP 89 (193)
T ss_pred EEEccC
Confidence 666654
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=54.16 E-value=1.6 Score=33.86 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=48.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD 101 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~ 101 (143)
.+++|++|+..+...++.++|..+|++....+-. +....+|-+.|........|+. .++..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6799999999999999999999999876655433 3345577799988888777777 3665544
No 156
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=52.40 E-value=6.1 Score=28.45 Aligned_cols=67 Identities=28% Similarity=0.362 Sum_probs=50.6
Q ss_pred CeEEEcC----CCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 032319 34 PRLFVSG----LSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD 101 (143)
Q Consensus 34 ~~v~v~~----l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~ 101 (143)
.++..|+ |...++++.+...|+.-+.+..+++.++.+ |.++.+.++++.-......++...++..+-
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 4556666 777788888888888888888888888765 788889999887776667777765555433
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=46.06 E-value=46 Score=23.15 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=35.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDR 69 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~ 69 (143)
.........+++.+++..+....+...|..+|.+....+....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 3445677899999999999999999999999988666665554
No 158
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.92 E-value=38 Score=25.34 Aligned_cols=32 Identities=28% Similarity=0.244 Sum_probs=22.3
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 78 GFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 78 afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
|||+|.+..+|+.|.+.+.... ...+.+..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 6999999999999998654433 2334555443
No 159
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.87 E-value=18 Score=22.07 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=22.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhc
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFA 55 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~ 55 (143)
.....++|-|.|||....++.|++.+.
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 456778999999999999998876554
No 160
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=40.81 E-value=76 Score=19.23 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=31.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYT 83 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~ 83 (143)
....-|||++++..+.+.....+....++-.-+ +.... ....||+|-++.
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~~--~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWSD--NNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEcc--CCCCCEEEEEeC
Confidence 445679999999988877655555554433333 33332 226788888774
No 161
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=37.51 E-value=4.8 Score=32.73 Aligned_cols=73 Identities=11% Similarity=0.002 Sum_probs=50.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
-..+++++.|++++++-++|..++..+.-+..+.+.....-.+..-+.+|+|.--.....|+-+|++..+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4567899999999999999999999876555555544333233445678888755556666666777655443
No 162
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=35.16 E-value=2.7e+02 Score=23.41 Aligned_cols=59 Identities=7% Similarity=-0.060 Sum_probs=41.9
Q ss_pred CCCHHHHHHhhcCCC-----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 44 LTTDEKLKEAFAPFG-----QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 44 ~~~~~~l~~~f~~~g-----~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
.++...|-.++..-+ .|-.+.|..+ |.||+.. ...+...+..|++..+.|+.+.|+.+.
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcC-hhhHHHHHHHhccccccCCceEEEECC
Confidence 356666666665433 2334555443 8899885 466788889999999999999999875
No 163
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=31.61 E-value=92 Score=19.37 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=30.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTS 84 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~ 84 (143)
....-|||++++..+.+..-..+-+.+++-. +.+.... .+..||+|-++.+
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~-avmv~~~--~~eqG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGN-VVMAWAT--NTESGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-EEEEEcC--CCCCCcEEEecCC
Confidence 3456799999888887664444444454433 3333322 2345899988765
No 164
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.96 E-value=11 Score=30.03 Aligned_cols=76 Identities=3% Similarity=-0.222 Sum_probs=53.3
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q 032319 36 LFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKS 112 (143)
Q Consensus 36 v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~ 112 (143)
.++..+|-.+++.++.-.|..||-|..+.+.+....+.....+|++... ..+..+|..+--..+.+..+++..+..
T Consensus 6 ~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 6 KSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3556677788889999999999988888777766556667788887654 445566655555566666666666553
No 165
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.26 E-value=91 Score=23.47 Aligned_cols=50 Identities=18% Similarity=0.436 Sum_probs=32.6
Q ss_pred CCCCeEEEcCCCCC------------CCHHHHHHhhcCCCCeeEEEEeec-----CCCCCcccEEEE
Q 032319 31 LTSPRLFVSGLSRL------------TTDEKLKEAFAPFGQLVYSKVITD-----RATGRSKGFGFV 80 (143)
Q Consensus 31 ~~~~~v~v~~l~~~------------~~~~~l~~~f~~~g~i~~~~l~~~-----~~~~~~~g~afv 80 (143)
..+-+||+.+||.. .++.-|+..|..||.|..+.|... ..+|+..|..|-
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~ 213 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFH 213 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceee
Confidence 44568888888753 345679999999999877665432 234555444433
No 166
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.57 E-value=57 Score=23.82 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=27.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCe
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQL 60 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i 60 (143)
.......++|+-|+|..++++.|+.+.+.+|-+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhh
Confidence 345667789999999999999999999988744
No 167
>PRK11901 hypothetical protein; Reviewed
Probab=26.11 E-value=1.8e+02 Score=22.28 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=38.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEE--EeCCHHHHHHHHHHhCCc
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFV--SYTSIEEAERAREGMNAK 98 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv--~f~~~~~a~~a~~~l~~~ 98 (143)
.....+|-+..+ ..++.|..|....+ +..+.+......| ..+|..| .|.+.++|..|+..|...
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnG-kpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDG-KPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECC-ceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 344456666554 45667777777654 3334333332223 2445544 688999999999987643
No 168
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.86 E-value=1.6e+02 Score=17.72 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCHHHHHHhhcC-CC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 032319 36 LFVSGLSRLTTDEKLKEAFAP-FG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93 (143)
Q Consensus 36 v~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~ 93 (143)
.|+--++...+..+|+..++. || ++..+..+.... ...=|+|.+.....|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 444457888899999999987 77 666765544432 23358999987777766544
No 169
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=23.60 E-value=1.7e+02 Score=17.43 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=25.8
Q ss_pred CCHHHHHHhhcC-CC----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 032319 45 TTDEKLKEAFAP-FG----QLVYSKVITDRATGRSKGFGFVSYTSIEEAER 90 (143)
Q Consensus 45 ~~~~~l~~~f~~-~g----~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~ 90 (143)
.+..+|++-+.. ++ .|.-..+......+.+.|+|.| |.+.+.+.+
T Consensus 13 psr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 13 PSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp --HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 455666666653 33 2333356666566677788877 677666544
No 170
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.06 E-value=1.5e+02 Score=16.80 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=19.6
Q ss_pred EEEEEeCCHHHHHHHHHHhCCcee
Q 032319 77 FGFVSYTSIEEAERAREGMNAKYL 100 (143)
Q Consensus 77 ~afv~f~~~~~a~~a~~~l~~~~l 100 (143)
+.++.|.+...|.++-+.|...-+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 678999999999999887766544
No 171
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.20 E-value=1.9e+02 Score=17.02 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=37.2
Q ss_pred EEEcCCCCCCCHHHHHHhhcC-CC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 032319 36 LFVSGLSRLTTDEKLKEAFAP-FG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93 (143)
Q Consensus 36 v~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~ 93 (143)
.|+-.++...+..+|+..++. |+ ++..+..+..+. .-.=|||.+..-..|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 455567888999999998886 66 666665444431 23358999977666665433
No 172
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=21.08 E-value=2.5e+02 Score=19.74 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=35.0
Q ss_pred CCHHHHHHhhcCC-CCeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHH
Q 032319 45 TTDEKLKEAFAPF-GQLVYSKVITDRATG--RSKGFGFVSYTSIEEAERAREG 94 (143)
Q Consensus 45 ~~~~~l~~~f~~~-g~i~~~~l~~~~~~~--~~~g~afv~f~~~~~a~~a~~~ 94 (143)
.++++|..+...- |++..+.+-... .+ ..+|--||+|...+.|.++++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 5667776666643 577777665543 24 5678889999999999987764
No 173
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=21.08 E-value=1.5e+02 Score=16.93 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=21.1
Q ss_pred HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEE
Q 032319 48 EKLKEAFAPFGQLVYSKVITDRATGRSKGFGFV 80 (143)
Q Consensus 48 ~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv 80 (143)
..|..+|-+..+|.++.|...+.-. +|-+||
T Consensus 33 ~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 33 VELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 4577788777789999888876433 344444
No 174
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=20.97 E-value=2e+02 Score=17.45 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=28.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcC-CCCeeEEEEeecCCCCCcccEEEEEeCC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAP-FGQLVYSKVITDRATGRSKGFGFVSYTS 84 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~-~g~i~~~~l~~~~~~~~~~g~afv~f~~ 84 (143)
....-|||++++..+.+..-..+-+. .++- .+.+.... .+..||.|-++.+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~~--~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWSS--NTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEeC--CCCCCcEEEecCC
Confidence 34567999999888876643333333 2332 23333332 3345688887654
No 175
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=20.53 E-value=3.2e+02 Score=19.38 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=29.2
Q ss_pred CCeEEEcCCCCCCCHHH--------HHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHH
Q 032319 33 SPRLFVSGLSRLTTDEK--------LKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIE 86 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~--------l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~ 86 (143)
...=++-.||..++.++ ++.+|..+|.+..+-|..+. .....+.|.|.+..
T Consensus 67 ~are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~---~~NpHaHim~t~R~ 125 (216)
T PF03389_consen 67 LAREFEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDG---PRNPHAHIMFTTRP 125 (216)
T ss_dssp -EEEEEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEET---TTEEEEEEEE--B-
T ss_pred EeeeeeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCC---CCCCEEEEEeecCc
Confidence 34556678999988864 45556677888888888752 25568888886543
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.24 E-value=2e+02 Score=21.29 Aligned_cols=28 Identities=14% Similarity=0.025 Sum_probs=22.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCe
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQL 60 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i 60 (143)
.....|+|||++++-..+..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 4567799999999999888888764433
Done!