Query 032319
Match_columns 143
No_of_seqs 105 out of 1490
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 20:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 3.6E-22 1.2E-26 124.7 11.9 84 29-112 15-98 (99)
2 2dgo_A Cytotoxic granule-assoc 99.9 2E-20 6.8E-25 119.4 15.2 90 27-116 9-98 (115)
3 3s8s_A Histone-lysine N-methyl 99.9 7.1E-21 2.4E-25 120.9 12.3 84 30-113 3-86 (110)
4 1whw_A Hypothetical protein ri 99.9 9.9E-21 3.4E-25 117.7 12.4 88 29-116 4-91 (99)
5 2dnz_A Probable RNA-binding pr 99.9 1.7E-20 5.7E-25 115.8 12.8 87 31-117 3-89 (95)
6 2cq0_A Eukaryotic translation 99.9 1.9E-20 6.5E-25 117.3 13.2 88 29-116 11-98 (103)
7 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1E-20 3.5E-25 118.3 11.8 90 28-117 7-96 (102)
8 2cpz_A CUG triplet repeat RNA- 99.9 2.2E-20 7.6E-25 119.2 13.6 90 27-116 19-108 (115)
9 2dgs_A DAZ-associated protein 99.9 2.4E-20 8.3E-25 116.0 13.2 87 29-116 6-92 (99)
10 2do0_A HnRNP M, heterogeneous 99.9 8.6E-20 3E-24 116.2 15.9 89 29-118 11-99 (114)
11 2do4_A Squamous cell carcinoma 99.9 3.2E-20 1.1E-24 115.7 13.5 89 25-114 9-97 (100)
12 2fy1_A RNA-binding motif prote 99.9 2.2E-20 7.6E-25 119.6 13.1 89 29-118 3-91 (116)
13 2d9p_A Polyadenylate-binding p 99.9 4E-20 1.4E-24 115.8 13.5 88 27-116 9-96 (103)
14 3md1_A Nuclear and cytoplasmic 99.8 2.5E-20 8.6E-25 112.2 11.8 82 33-114 1-82 (83)
15 1x4h_A RNA-binding protein 28; 99.8 4.4E-20 1.5E-24 117.0 13.4 89 27-115 9-103 (111)
16 2cph_A RNA binding motif prote 99.8 3.6E-20 1.2E-24 116.7 12.6 90 27-116 9-100 (107)
17 1x5u_A Splicing factor 3B subu 99.8 4.1E-20 1.4E-24 116.1 12.6 88 27-114 9-96 (105)
18 1p27_B RNA-binding protein 8A; 99.8 1.4E-20 4.8E-25 118.4 10.4 88 27-114 17-104 (106)
19 2dng_A Eukaryotic translation 99.8 7.2E-20 2.5E-24 114.7 13.4 88 27-116 9-96 (103)
20 2dnm_A SRP46 splicing factor; 99.8 1.9E-20 6.6E-25 117.2 10.7 86 29-114 9-94 (103)
21 2lxi_A RNA-binding protein 10; 99.8 3E-21 1E-25 118.7 6.9 82 33-114 1-84 (91)
22 2cpf_A RNA binding motif prote 99.8 3.5E-20 1.2E-24 115.1 11.7 86 31-116 3-91 (98)
23 2e5h_A Zinc finger CCHC-type a 99.8 4.9E-20 1.7E-24 113.5 12.3 84 28-111 11-94 (94)
24 1x5s_A Cold-inducible RNA-bind 99.8 1.8E-20 6.3E-25 117.1 10.3 89 28-116 7-95 (102)
25 1x5t_A Splicing factor 3B subu 99.8 2.9E-20 9.8E-25 114.9 11.0 86 31-116 3-89 (96)
26 2cqc_A Arginine/serine-rich sp 99.8 4.4E-20 1.5E-24 113.8 11.8 85 28-112 10-94 (95)
27 2cqd_A RNA-binding region cont 99.8 1.2E-19 4E-24 116.0 14.2 87 27-114 11-97 (116)
28 2cpe_A RNA-binding protein EWS 99.8 5.9E-20 2E-24 116.8 12.7 90 27-116 9-106 (113)
29 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.5E-20 8.7E-25 113.1 10.4 83 31-113 4-86 (87)
30 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.7E-20 1.6E-24 123.6 12.7 87 29-115 35-121 (156)
31 1wi8_A EIF-4B, eukaryotic tran 99.8 7E-20 2.4E-24 114.9 12.4 87 29-117 11-98 (104)
32 2dnh_A Bruno-like 5, RNA bindi 99.8 1.2E-19 4.1E-24 113.9 13.4 86 30-116 12-100 (105)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.4E-20 1.2E-24 112.1 10.5 82 30-111 4-85 (85)
34 2kxn_B Transformer-2 protein h 99.8 2.9E-20 1E-24 121.2 10.6 89 26-114 39-127 (129)
35 2la6_A RNA-binding protein FUS 99.8 7.4E-20 2.5E-24 113.8 11.9 87 25-111 5-99 (99)
36 2dgp_A Bruno-like 4, RNA bindi 99.8 3.7E-20 1.3E-24 116.5 10.5 90 28-117 8-100 (106)
37 4f25_A Polyadenylate-binding p 99.8 4.8E-20 1.6E-24 117.9 11.1 82 32-115 4-85 (115)
38 3p5t_L Cleavage and polyadenyl 99.8 6.3E-21 2.2E-25 116.9 6.6 80 34-113 2-83 (90)
39 1u6f_A Tcubp1, RNA-binding pro 99.8 1.6E-19 5.3E-24 118.8 13.6 89 28-116 37-125 (139)
40 2dhg_A TRNA selenocysteine ass 99.8 7E-20 2.4E-24 114.8 11.4 87 29-116 5-93 (104)
41 2x1f_A MRNA 3'-END-processing 99.8 6.6E-20 2.3E-24 113.4 11.1 83 32-114 1-83 (96)
42 2cq3_A RNA-binding protein 9; 99.8 3.4E-19 1.2E-23 111.5 14.4 88 27-116 9-96 (103)
43 1oo0_B CG8781-PA, drosophila Y 99.8 4.2E-20 1.4E-24 117.0 10.3 88 27-114 20-107 (110)
44 2jrs_A RNA-binding protein 39; 99.8 9.5E-20 3.2E-24 115.3 11.9 88 27-114 20-107 (108)
45 2dh8_A DAZ-associated protein 99.8 6.1E-20 2.1E-24 115.4 10.8 88 27-115 10-97 (105)
46 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.3E-19 7.8E-24 112.3 13.3 87 28-116 10-96 (103)
47 3ex7_B RNA-binding protein 8A; 99.8 4.3E-20 1.5E-24 119.6 9.9 90 27-116 16-105 (126)
48 2lkz_A RNA-binding protein 5; 99.8 3.2E-20 1.1E-24 114.9 8.9 83 30-112 6-94 (95)
49 2div_A TRNA selenocysteine ass 99.8 7.5E-20 2.6E-24 113.7 10.4 85 29-113 5-94 (99)
50 1x4a_A Splicing factor, argini 99.8 3E-19 1E-23 112.9 13.3 88 24-114 13-100 (109)
51 4a8x_A RNA-binding protein wit 99.8 8.6E-20 2.9E-24 110.9 10.0 84 31-114 2-86 (88)
52 2cqg_A TDP-43, TAR DNA-binding 99.8 6.5E-19 2.2E-23 110.2 14.2 87 27-115 9-95 (103)
53 2khc_A Testis-specific RNP-typ 99.8 9.1E-20 3.1E-24 116.8 10.5 84 28-111 35-118 (118)
54 3s7r_A Heterogeneous nuclear r 99.8 2.7E-19 9.1E-24 108.7 11.7 82 28-110 6-87 (87)
55 2dgv_A HnRNP M, heterogeneous 99.8 1.8E-19 6.1E-24 110.5 10.9 85 29-115 4-88 (92)
56 2cpi_A CCR4-NOT transcription 99.8 2.8E-19 9.4E-24 113.6 11.9 87 28-114 10-102 (111)
57 2cqp_A RNA-binding protein 12; 99.8 1.5E-19 5.1E-24 112.1 10.0 85 29-113 11-95 (98)
58 3ucg_A Polyadenylate-binding p 99.8 2.2E-19 7.6E-24 109.4 10.6 81 32-113 5-85 (89)
59 3ulh_A THO complex subunit 4; 99.8 2.7E-19 9.4E-24 112.6 11.2 84 27-111 23-106 (107)
60 1x4b_A Heterogeneous nuclear r 99.8 1.5E-19 5.1E-24 115.5 10.1 86 30-116 24-109 (116)
61 2rs2_A Musashi-1, RNA-binding 99.8 2.8E-19 9.5E-24 113.3 11.2 88 27-115 19-106 (109)
62 2ywk_A Putative RNA-binding pr 99.8 1.8E-19 6.3E-24 111.1 10.0 83 28-111 11-93 (95)
63 2kt5_A RNA and export factor-b 99.8 5.5E-19 1.9E-23 114.1 12.7 85 29-114 31-115 (124)
64 2dgx_A KIAA0430 protein; RRM d 99.8 2.5E-19 8.6E-24 110.9 10.6 82 30-114 6-91 (96)
65 2fc9_A NCL protein; structure 99.8 7.2E-19 2.5E-23 109.7 12.7 85 28-116 10-94 (101)
66 1p1t_A Cleavage stimulation fa 99.8 5.4E-20 1.8E-24 115.3 7.4 85 30-114 5-89 (104)
67 2m2b_A RNA-binding protein 10; 99.8 7.1E-20 2.4E-24 119.5 8.2 87 27-114 17-109 (131)
68 3ns6_A Eukaryotic translation 99.8 5E-20 1.7E-24 115.0 6.9 83 31-113 4-93 (100)
69 3n9u_C Cleavage and polyadenyl 99.8 1.7E-19 5.8E-24 121.1 9.9 82 32-113 54-137 (156)
70 2kn4_A Immunoglobulin G-bindin 99.8 3.3E-19 1.1E-23 119.5 11.2 87 28-114 65-151 (158)
71 2cq4_A RNA binding motif prote 99.8 2.5E-20 8.7E-25 118.8 5.3 83 31-114 23-105 (114)
72 2dgw_A Probable RNA-binding pr 99.8 1.7E-18 5.9E-23 106.0 12.4 82 29-113 6-87 (91)
73 2fc8_A NCL protein; structure 99.8 2.2E-18 7.5E-23 107.6 13.0 85 29-116 11-95 (102)
74 1x4e_A RNA binding motif, sing 99.8 8.3E-20 2.8E-24 110.5 6.3 82 30-111 2-83 (85)
75 1sjq_A Polypyrimidine tract-bi 99.8 4.4E-19 1.5E-23 111.4 9.5 84 27-116 10-95 (105)
76 2ek1_A RNA-binding protein 12; 99.8 2.4E-19 8.3E-24 110.5 8.1 81 31-111 13-93 (95)
77 2jwn_A Embryonic polyadenylate 99.8 9.4E-19 3.2E-23 113.0 11.2 81 32-113 35-115 (124)
78 2cq1_A PTB-like protein L; RRM 99.8 4.5E-18 1.5E-22 106.4 13.6 83 28-116 10-94 (101)
79 2jvo_A Nucleolar protein 3; nu 99.8 9.6E-19 3.3E-23 110.7 10.6 83 24-114 22-104 (108)
80 2err_A Ataxin-2-binding protei 99.8 8E-19 2.7E-23 111.1 10.2 88 24-113 20-107 (109)
81 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.3E-18 4.5E-23 114.2 11.5 84 27-110 57-140 (140)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.5E-19 3.2E-23 118.4 11.1 89 27-115 66-154 (165)
83 2dis_A Unnamed protein product 99.8 8.6E-19 2.9E-23 110.7 10.2 86 31-116 6-95 (109)
84 1wex_A Hypothetical protein (r 99.8 2.2E-18 7.4E-23 108.4 11.9 85 26-116 8-94 (104)
85 3r27_A HnRNP L, heterogeneous 99.8 9.8E-19 3.4E-23 108.8 10.2 83 26-114 14-98 (100)
86 2dgu_A Heterogeneous nuclear r 99.8 4.4E-18 1.5E-22 106.5 13.2 82 29-118 7-88 (103)
87 2lea_A Serine/arginine-rich sp 99.8 2.7E-19 9.3E-24 117.4 7.9 87 28-114 42-128 (135)
88 2dnq_A RNA-binding protein 4B; 99.8 2.2E-18 7.6E-23 105.3 11.5 80 29-116 4-83 (90)
89 1x4d_A Matrin 3; structural ge 99.8 8.3E-19 2.9E-23 109.8 9.6 80 29-114 11-93 (102)
90 1wez_A HnRNP H', FTP-3, hetero 99.8 1.7E-18 5.8E-23 108.5 10.9 83 29-114 11-93 (102)
91 1x5o_A RNA binding motif, sing 99.8 3.4E-18 1.2E-22 108.8 12.5 85 28-113 20-112 (114)
92 2hvz_A Splicing factor, argini 99.8 1.2E-18 4E-23 108.7 10.1 78 34-116 1-78 (101)
93 2mss_A Protein (musashi1); RNA 99.8 2.8E-19 9.5E-24 105.7 6.8 75 35-110 1-75 (75)
94 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.5E-19 1.2E-23 111.1 7.4 84 28-113 14-98 (100)
95 1wg5_A Heterogeneous nuclear r 99.8 2.4E-18 8.1E-23 108.0 11.3 84 29-114 11-95 (104)
96 1x4c_A Splicing factor, argini 99.8 9E-18 3.1E-22 106.0 14.0 79 29-114 11-94 (108)
97 1s79_A Lupus LA protein; RRM, 99.8 6.8E-19 2.3E-23 110.5 8.6 81 30-112 8-88 (103)
98 2cpy_A RNA-binding protein 12; 99.8 1.6E-19 5.6E-24 115.2 5.8 84 29-114 11-95 (114)
99 1why_A Hypothetical protein ri 99.8 3.4E-18 1.2E-22 105.9 11.3 82 27-114 11-94 (97)
100 2cpx_A Hypothetical protein FL 99.8 4.5E-19 1.5E-23 113.0 7.4 85 28-116 20-108 (115)
101 2dgt_A RNA-binding protein 30; 99.8 6.8E-18 2.3E-22 103.5 12.4 79 29-115 6-84 (92)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.8E-19 1.7E-23 105.1 6.4 76 34-110 1-76 (77)
103 2ki2_A SS-DNA binding protein 99.8 1E-19 3.4E-24 111.3 3.5 80 34-114 2-81 (90)
104 2cpj_A Non-POU domain-containi 99.8 6.6E-18 2.2E-22 104.9 11.8 81 28-114 10-90 (99)
105 2ad9_A Polypyrimidine tract-bi 99.8 4.5E-18 1.5E-22 109.1 11.2 82 29-116 27-110 (119)
106 1x4g_A Nucleolysin TIAR; struc 99.8 4.6E-18 1.6E-22 107.4 11.1 81 29-115 21-101 (109)
107 2db1_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 109.8 10.1 83 29-113 13-98 (118)
108 2wbr_A GW182, gawky, LD47780P; 99.8 3E-18 1E-22 103.7 9.2 76 30-111 4-79 (89)
109 2cpd_A Apobec-1 stimulating pr 99.8 2.5E-17 8.5E-22 102.3 13.3 81 26-114 8-90 (99)
110 2cqh_A IGF-II mRNA-binding pro 99.8 3.9E-18 1.3E-22 104.8 9.5 81 29-116 4-86 (93)
111 3q2s_C Cleavage and polyadenyl 99.8 1.6E-18 5.4E-23 123.1 8.7 81 32-112 67-149 (229)
112 2hgl_A HNRPF protein, heteroge 99.8 3.2E-18 1.1E-22 112.4 9.5 83 29-113 40-125 (136)
113 1fj7_A Nucleolin RBD1, protein 99.8 2.4E-19 8.3E-24 111.8 3.8 85 29-115 13-97 (101)
114 1wel_A RNA-binding protein 12; 99.8 1.5E-18 5E-23 112.2 7.6 84 29-113 21-104 (124)
115 2ytc_A PRE-mRNA-splicing facto 99.8 1E-17 3.5E-22 101.2 10.8 78 28-111 7-85 (85)
116 2nlw_A Eukaryotic translation 99.8 4E-18 1.4E-22 107.2 9.3 82 30-113 12-100 (105)
117 1wf1_A RNA-binding protein RAL 99.8 1.5E-17 5E-22 105.3 11.9 78 29-114 23-101 (110)
118 2qfj_A FBP-interacting repress 99.8 1.1E-17 3.9E-22 116.6 12.3 84 31-114 123-206 (216)
119 3pgw_S U1-70K; protein-RNA com 99.8 2.1E-17 7.1E-22 127.1 14.6 85 30-114 99-183 (437)
120 2a3j_A U1 small nuclear ribonu 99.8 4.5E-18 1.5E-22 110.5 9.2 82 30-114 26-111 (127)
121 2dnp_A RNA-binding protein 14; 99.8 1.4E-17 4.8E-22 101.7 10.9 78 29-114 5-82 (90)
122 2krb_A Eukaryotic translation 99.8 1.3E-18 4.6E-23 104.4 5.9 72 34-107 2-80 (81)
123 2e5g_A U6 snRNA-specific termi 99.8 2.3E-17 8E-22 101.5 11.7 79 30-114 5-83 (94)
124 2la4_A Nuclear and cytoplasmic 99.8 6.9E-18 2.4E-22 105.2 9.4 77 30-112 24-100 (101)
125 3lqv_A PRE-mRNA branch site pr 99.8 1E-17 3.4E-22 106.8 10.2 82 30-114 5-86 (115)
126 3md3_A Nuclear and cytoplasmic 99.8 2.2E-17 7.7E-22 110.4 12.4 84 28-111 82-165 (166)
127 1fjc_A Nucleolin RBD2, protein 99.8 4.9E-18 1.7E-22 104.9 8.4 81 29-114 12-92 (96)
128 2e5j_A Methenyltetrahydrofolat 99.8 1.1E-17 3.7E-22 103.6 10.0 81 29-114 15-95 (97)
129 1nu4_A U1A RNA binding domain; 99.7 4.7E-18 1.6E-22 105.1 8.2 82 30-114 5-90 (97)
130 2xnq_A Nuclear polyadenylated 99.7 2.1E-17 7E-22 102.5 11.0 79 27-113 16-95 (97)
131 2lcw_A RNA-binding protein FUS 99.6 8E-20 2.7E-24 116.8 0.0 87 30-116 4-98 (116)
132 2jvr_A Nucleolar protein 3; RN 99.7 6.1E-18 2.1E-22 107.4 8.6 79 30-112 25-104 (111)
133 4f02_A Polyadenylate-binding p 99.7 1.8E-17 6E-22 116.2 11.6 83 31-113 13-95 (213)
134 2lmi_A GRSF-1, G-rich sequence 99.7 2.4E-18 8.2E-23 108.5 6.4 84 28-113 6-92 (107)
135 1x5p_A Negative elongation fac 99.7 8.5E-17 2.9E-21 99.5 13.3 79 29-115 11-89 (97)
136 1x4f_A Matrin 3; structural ge 99.7 6E-18 2.1E-22 107.5 8.0 81 30-116 22-105 (112)
137 2xs2_A Deleted in azoospermia- 99.7 1.7E-18 6E-23 108.1 5.4 83 30-115 6-88 (102)
138 1fxl_A Paraneoplastic encephal 99.7 3.5E-17 1.2E-21 109.6 11.9 82 32-113 1-82 (167)
139 2dnn_A RNA-binding protein 12; 99.7 1.3E-17 4.5E-22 105.6 9.1 79 32-113 15-93 (109)
140 2kvi_A Nuclear polyadenylated 99.7 9.3E-18 3.2E-22 103.8 8.2 78 29-114 6-84 (96)
141 1iqt_A AUF1, heterogeneous nuc 99.7 1.4E-18 4.8E-23 102.6 4.3 75 35-110 1-75 (75)
142 1b7f_A Protein (SXL-lethal pro 99.7 4E-17 1.4E-21 109.6 11.3 83 32-114 2-84 (168)
143 2f3j_A RNA and export factor b 99.7 1.6E-17 5.4E-22 113.7 9.1 83 30-113 85-167 (177)
144 2i2y_A Fusion protein consists 99.7 3.2E-17 1.1E-21 109.1 9.2 82 27-113 67-148 (150)
145 1l3k_A Heterogeneous nuclear r 99.7 8E-17 2.7E-21 110.7 11.4 89 29-118 100-188 (196)
146 2j8a_A Histone-lysine N-methyl 99.7 3.1E-17 1.1E-21 105.6 8.5 78 34-111 3-94 (136)
147 2yh0_A Splicing factor U2AF 65 99.7 1.2E-16 4.3E-21 109.9 12.0 84 31-114 112-195 (198)
148 1l3k_A Heterogeneous nuclear r 99.7 7.2E-17 2.5E-21 110.9 10.8 87 27-114 7-93 (196)
149 2hgn_A Heterogeneous nuclear r 99.7 6E-18 2E-22 111.5 5.0 84 29-115 42-125 (139)
150 3egn_A RNA-binding protein 40; 99.7 7.4E-17 2.5E-21 106.5 10.2 83 29-114 41-131 (143)
151 2e44_A Insulin-like growth fac 99.7 5.3E-17 1.8E-21 100.2 8.8 80 30-113 12-92 (96)
152 1wg1_A KIAA1579 protein, homol 99.7 1.3E-16 4.4E-21 97.1 10.1 75 32-113 4-78 (88)
153 1whx_A Hypothetical protein ri 99.7 5.3E-17 1.8E-21 103.0 8.5 76 32-113 9-84 (111)
154 3zzy_A Polypyrimidine tract-bi 99.7 2E-16 6.8E-21 102.8 11.3 80 30-114 25-107 (130)
155 2g4b_A Splicing factor U2AF 65 99.7 1.8E-16 6E-21 106.9 11.3 81 30-110 91-171 (172)
156 3beg_B Splicing factor, argini 99.7 6.1E-17 2.1E-21 103.4 8.6 76 31-113 14-94 (115)
157 2dha_A FLJ20171 protein; RRM d 99.7 3.4E-17 1.2E-21 105.8 7.1 81 31-113 21-105 (123)
158 2e5i_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 100.6 12.1 78 31-114 23-103 (124)
159 1sjr_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 107.9 9.5 81 30-114 43-125 (164)
160 2dnl_A Cytoplasmic polyadenyla 99.7 3.2E-16 1.1E-20 99.8 10.9 79 30-111 5-86 (114)
161 2hgm_A HNRPF protein, heteroge 99.7 5.3E-17 1.8E-21 105.2 7.2 81 29-112 38-120 (126)
162 4f02_A Polyadenylate-binding p 99.7 2E-16 6.8E-21 110.8 10.2 80 32-113 102-181 (213)
163 2cq2_A Hypothetical protein LO 99.7 1.2E-16 4.1E-21 101.6 8.1 78 30-113 22-106 (114)
164 3md3_A Nuclear and cytoplasmic 99.7 3.5E-16 1.2E-20 104.6 10.6 80 34-114 1-80 (166)
165 1wf0_A TDP-43, TAR DNA-binding 99.7 1.5E-16 5.2E-21 96.7 7.8 79 31-116 3-81 (88)
166 3d2w_A TAR DNA-binding protein 99.7 3.6E-16 1.2E-20 95.4 9.4 78 28-114 6-85 (89)
167 2cjk_A Nuclear polyadenylated 99.7 9.1E-17 3.1E-21 107.8 7.3 81 32-113 86-166 (167)
168 2diu_A KIAA0430 protein; struc 99.7 7.5E-16 2.6E-20 94.1 10.6 74 32-115 7-86 (96)
169 1b7f_A Protein (SXL-lethal pro 99.7 6E-16 2.1E-20 103.8 11.3 81 30-110 86-168 (168)
170 2qfj_A FBP-interacting repress 99.7 2.6E-16 8.9E-21 109.7 9.5 83 31-113 26-108 (216)
171 3tyt_A Heterogeneous nuclear r 99.7 4.6E-16 1.6E-20 108.6 10.7 77 32-113 3-80 (205)
172 2hzc_A Splicing factor U2AF 65 99.7 3.8E-16 1.3E-20 94.5 7.6 73 30-109 3-86 (87)
173 2bz2_A Negative elongation fac 99.7 1.1E-15 3.8E-20 98.4 10.0 78 29-114 35-112 (121)
174 1fxl_A Paraneoplastic encephal 99.7 1E-15 3.6E-20 102.3 10.2 81 30-110 85-167 (167)
175 3nmr_A Cugbp ELAV-like family 99.6 1.1E-15 3.6E-20 103.1 9.9 82 32-113 2-88 (175)
176 1fje_B Nucleolin RBD12, protei 99.6 1.2E-15 4.1E-20 103.2 9.8 80 29-113 95-174 (175)
177 3pgw_A U1-A; protein-RNA compl 99.6 2.4E-15 8.2E-20 109.0 11.5 83 29-114 5-91 (282)
178 3nmr_A Cugbp ELAV-like family 99.6 2.5E-15 8.7E-20 101.3 9.9 81 29-110 91-174 (175)
179 2cjk_A Nuclear polyadenylated 99.6 1E-15 3.4E-20 102.7 7.9 79 32-112 2-80 (167)
180 2pe8_A Splicing factor 45; RRM 99.6 6.6E-15 2.3E-19 92.5 10.9 82 31-112 6-93 (105)
181 2voo_A Lupus LA protein; RNA-b 99.6 5.5E-15 1.9E-19 102.3 11.2 79 33-113 109-187 (193)
182 2ghp_A U4/U6 snRNA-associated 99.6 2.8E-15 9.5E-20 109.2 9.4 84 29-113 206-291 (292)
183 3smz_A Protein raver-1, ribonu 99.6 8.7E-15 3E-19 106.2 12.0 86 29-115 180-266 (284)
184 3smz_A Protein raver-1, ribonu 99.6 1.1E-14 3.9E-19 105.6 12.5 84 31-114 93-176 (284)
185 3u1l_A PRE-mRNA-splicing facto 99.6 3.1E-15 1.1E-19 106.5 8.6 79 29-113 130-229 (240)
186 2dit_A HIV TAT specific factor 99.6 5.6E-14 1.9E-18 89.1 12.9 82 29-114 11-103 (112)
187 2adc_A Polypyrimidine tract-bi 99.6 6.7E-15 2.3E-19 104.1 8.6 80 29-113 30-110 (229)
188 3pgw_A U1-A; protein-RNA compl 99.6 2E-14 6.9E-19 104.2 11.2 77 30-111 204-281 (282)
189 1qm9_A Polypyrimidine tract-bi 99.6 1.1E-14 3.9E-19 100.3 7.8 77 32-113 2-79 (198)
190 3sde_A Paraspeckle component 1 99.5 2.9E-14 9.8E-19 102.7 9.9 78 29-112 18-95 (261)
191 1fje_B Nucleolin RBD12, protei 99.5 2.2E-15 7.5E-20 101.9 3.6 84 29-114 9-92 (175)
192 2adc_A Polypyrimidine tract-bi 99.5 5E-14 1.7E-18 99.5 10.2 78 31-113 149-228 (229)
193 1qm9_A Polypyrimidine tract-bi 99.5 2.9E-14 1E-18 98.3 8.0 78 31-113 118-197 (198)
194 3sde_A Paraspeckle component 1 99.5 7.9E-14 2.7E-18 100.4 10.5 83 31-114 94-180 (261)
195 2yh0_A Splicing factor U2AF 65 99.5 1.6E-13 5.4E-18 94.3 11.6 76 32-114 3-89 (198)
196 2ghp_A U4/U6 snRNA-associated 99.5 4.4E-14 1.5E-18 102.8 9.0 84 31-115 115-199 (292)
197 2g4b_A Splicing factor U2AF 65 99.5 6.8E-14 2.3E-18 94.1 8.5 75 32-113 3-88 (172)
198 3tyt_A Heterogeneous nuclear r 99.5 3.2E-14 1.1E-18 99.3 6.9 71 31-103 121-193 (205)
199 3v4m_A Splicing factor U2AF 65 99.5 1.3E-13 4.5E-18 86.5 8.4 81 32-112 4-96 (105)
200 1jmt_A Splicing factor U2AF 35 99.5 2.1E-14 7.3E-19 90.0 3.9 72 38-110 20-103 (104)
201 3ue2_A Poly(U)-binding-splicin 99.5 4.2E-13 1.4E-17 85.9 9.3 80 32-111 19-107 (118)
202 3tht_A Alkylated DNA repair pr 99.4 6.9E-13 2.4E-17 98.9 8.8 77 29-111 14-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 9.2E-12 3.1E-16 77.4 12.2 65 43-114 27-91 (100)
204 3s6e_A RNA-binding protein 39; 99.3 1.6E-11 5.4E-16 78.1 9.8 79 30-112 4-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 3E-10 1E-14 72.6 9.1 78 29-112 14-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 7.7E-10 2.6E-14 66.9 7.9 73 32-113 6-86 (91)
207 3dxb_A Thioredoxin N-terminall 98.9 3.4E-09 1.2E-13 74.3 8.2 66 46-111 142-211 (222)
208 2l9w_A U4/U6 snRNA-associated- 98.8 3.1E-08 1.1E-12 61.5 8.9 74 31-110 19-97 (117)
209 1ufw_A Synaptojanin 2; RNP dom 98.8 3.3E-09 1.1E-13 64.4 4.6 72 31-111 13-93 (95)
210 2dhx_A Poly (ADP-ribose) polym 98.1 0.00011 3.9E-09 45.0 10.3 75 30-113 5-84 (104)
211 1wey_A Calcipressin 1; structu 98.0 0.00011 3.6E-09 45.3 8.9 77 32-114 4-85 (104)
212 1whv_A Poly(A)-specific ribonu 97.7 0.00029 9.9E-09 42.8 7.5 58 30-96 13-70 (100)
213 1uw4_A UPF3X; nonsense mediate 97.5 0.0011 3.8E-08 39.9 8.4 69 34-102 2-72 (91)
214 1wwh_A Nucleoporin 35, nucleop 97.4 0.00073 2.5E-08 42.6 7.1 77 27-111 18-95 (119)
215 3ctr_A Poly(A)-specific ribonu 97.2 0.00076 2.6E-08 41.1 5.2 54 34-96 7-60 (101)
216 2l08_A Regulator of nonsense t 96.5 0.019 6.6E-07 34.8 7.6 72 31-102 7-80 (97)
217 2kn4_A Immunoglobulin G-bindin 95.8 0.016 5.4E-07 37.7 4.8 36 62-99 2-37 (158)
218 3pq1_A Poly(A) RNA polymerase; 95.7 0.0064 2.2E-07 47.0 3.1 54 34-93 54-107 (464)
219 3p3d_A Nucleoporin 53; structu 95.7 0.016 5.5E-07 37.1 4.4 76 34-111 8-97 (132)
220 2i2y_A Fusion protein consists 94.2 0.06 2.1E-06 34.7 4.1 41 72-113 10-51 (150)
221 3d45_A Poly(A)-specific ribonu 90.2 1.1 3.7E-05 35.0 7.3 57 32-97 439-495 (507)
222 4e8u_A Putative uncharacterize 59.8 35 0.0012 22.6 7.6 62 33-98 12-85 (172)
223 2g0c_A ATP-dependent RNA helic 51.6 13 0.00044 20.6 2.7 58 45-111 13-75 (76)
224 1xn9_A 30S ribosomal protein S 47.1 44 0.0015 20.0 5.6 48 43-91 28-80 (101)
225 3u5c_Y RP50, 40S ribosomal pro 30.9 1E+02 0.0035 19.5 6.1 46 44-90 34-84 (135)
226 2v94_A RPS24, 30S ribosomal pr 30.1 94 0.0032 18.8 5.3 46 44-90 38-88 (107)
227 1ywx_A 30S ribosomal protein S 29.3 95 0.0032 18.6 5.5 46 44-90 29-79 (102)
228 2ns6_A Mobilization protein A; 27.3 1.4E+02 0.0047 19.8 6.1 52 31-85 68-127 (185)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=3.6e-22 Score=124.70 Aligned_cols=84 Identities=31% Similarity=0.497 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
...+.++|||+|||..+++++|+++|++||.|..+++..++.+|.++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCC
Q 032319 109 PAKS 112 (143)
Q Consensus 109 ~~~~ 112 (143)
+++|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9874
No 2
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=2e-20 Score=119.41 Aligned_cols=90 Identities=38% Similarity=0.553 Sum_probs=83.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.......++|||+|||..+++++|+++|..||.|..+.|..++.++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566788999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++.++...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999866543
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=7.1e-21 Score=120.93 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
..+..+|||+|||+.+++++|+++|++||.|.++.|..+..+++++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 032319 110 AKSR 113 (143)
Q Consensus 110 ~~~~ 113 (143)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8754
No 4
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=9.9e-21 Score=117.73 Aligned_cols=88 Identities=28% Similarity=0.459 Sum_probs=81.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
...+.++|||+|||..+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35677899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 032319 109 PAKSREAR 116 (143)
Q Consensus 109 ~~~~~~~~ 116 (143)
++.++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876543
No 5
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.7e-20 Score=115.82 Aligned_cols=87 Identities=33% Similarity=0.491 Sum_probs=81.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 032319 111 KSREARP 117 (143)
Q Consensus 111 ~~~~~~~ 117 (143)
..+....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8665443
No 6
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-20 Score=117.29 Aligned_cols=88 Identities=32% Similarity=0.468 Sum_probs=82.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|..||.|..+.|..++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45677899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 032319 109 PAKSREAR 116 (143)
Q Consensus 109 ~~~~~~~~ 116 (143)
++.++...
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99865433
No 7
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-20 Score=118.29 Aligned_cols=90 Identities=32% Similarity=0.470 Sum_probs=82.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
....+.++|||+|||..+++++|+++|..||.|..+.|..++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCCCCCCCC
Q 032319 108 DPAKSREARP 117 (143)
Q Consensus 108 ~~~~~~~~~~ 117 (143)
.++.++..+.
T Consensus 87 ~~a~~~~~~~ 96 (102)
T 2cqb_A 87 NLAKPMRIKE 96 (102)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9998765443
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=2.2e-20 Score=119.22 Aligned_cols=90 Identities=31% Similarity=0.412 Sum_probs=82.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.......++|||+|||..+++++|+++|..||.|..+.|..++.++.+++||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33455678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.+++++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999866543
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=116.00 Aligned_cols=87 Identities=26% Similarity=0.481 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|..||.|..+.|..++.++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45677899999999999999999999999999999999998889999999999999999999999 99999999999999
Q ss_pred eCCCCCCC
Q 032319 109 PAKSREAR 116 (143)
Q Consensus 109 ~~~~~~~~ 116 (143)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99866543
No 10
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.6e-20 Score=116.19 Aligned_cols=89 Identities=25% Similarity=0.326 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|..||.|..+.|..+. ++.+++||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 45567899999999999999999999999999999999987 58999999999999999999999999999999999999
Q ss_pred eCCCCCCCCC
Q 032319 109 PAKSREARPP 118 (143)
Q Consensus 109 ~~~~~~~~~~ 118 (143)
++.....+..
T Consensus 90 ~a~~~~~~~~ 99 (114)
T 2do0_A 90 MDERALPKGD 99 (114)
T ss_dssp ECSCCCCCSC
T ss_pred EcccCCCCCC
Confidence 9886544433
No 11
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.2e-20 Score=115.66 Aligned_cols=89 Identities=29% Similarity=0.481 Sum_probs=81.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 032319 25 IRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV 104 (143)
Q Consensus 25 ~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~ 104 (143)
.........++|||+|||..+++++|+++|..||.|..+.+..+. ++.++|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 9 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 9 FRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp CCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred cCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 334456778999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred EEEeeCCCCC
Q 032319 105 IFVDPAKSRE 114 (143)
Q Consensus 105 l~v~~~~~~~ 114 (143)
|+|.++.++.
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999998654
No 12
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=119.63 Aligned_cols=89 Identities=33% Similarity=0.523 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
+.....+|||+|||..+++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred eCCCCCCCCC
Q 032319 109 PAKSREARPP 118 (143)
Q Consensus 109 ~~~~~~~~~~ 118 (143)
+++++.....
T Consensus 82 ~a~~~~~~~~ 91 (116)
T 2fy1_A 82 QAKKPSFQSG 91 (116)
T ss_dssp ECCCSSCSSS
T ss_pred ECCCCCCCCC
Confidence 9987654433
No 13
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4e-20 Score=115.82 Aligned_cols=88 Identities=38% Similarity=0.620 Sum_probs=81.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.....+.++|||+|||..+++++|+++|..||.|..+.|..+ ++.+++||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 345668899999999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++.++..+
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999876544
No 14
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=2.5e-20 Score=112.22 Aligned_cols=82 Identities=35% Similarity=0.537 Sum_probs=77.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKS 112 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~ 112 (143)
+.+|||+|||..+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988899999999999999999999999999999999999999986
Q ss_pred CC
Q 032319 113 RE 114 (143)
Q Consensus 113 ~~ 114 (143)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 15
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-20 Score=116.97 Aligned_cols=89 Identities=28% Similarity=0.421 Sum_probs=82.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC------Ccee
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMN------AKYL 100 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~l 100 (143)
+....+..+|||+|||..+++++|+.+|..||.|..+.|..++.++.++|||||+|.+.++|.+|+..++ +..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3456678899999999999999999999999999999999998889999999999999999999999999 9999
Q ss_pred CCeEEEEeeCCCCCC
Q 032319 101 DGWVIFVDPAKSREA 115 (143)
Q Consensus 101 ~~~~l~v~~~~~~~~ 115 (143)
.|+.|.|.++.++..
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 999999999986543
No 16
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.6e-20 Score=116.67 Aligned_cols=90 Identities=22% Similarity=0.434 Sum_probs=82.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITD-RATGRSKGFGFVSYTSIEEAERAREGM-NAKYLDGWV 104 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~l~~~~ 104 (143)
.......++|||+|||..+++++|+.+|..||.|..+.|..+ ..++.++|||||+|.+.++|.+|+..| ++..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 445677899999999999999999999999999999999988 678999999999999999999999999 999999999
Q ss_pred EEEeeCCCCCCC
Q 032319 105 IFVDPAKSREAR 116 (143)
Q Consensus 105 l~v~~~~~~~~~ 116 (143)
|.|.++.++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-20 Score=116.06 Aligned_cols=88 Identities=30% Similarity=0.425 Sum_probs=82.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
........+|||+|||..+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556778999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
|.++.++.
T Consensus 89 v~~a~~~~ 96 (105)
T 1x5u_A 89 VNKASAHN 96 (105)
T ss_dssp EEETTTTS
T ss_pred EEECCCCC
Confidence 99998654
No 18
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=118.39 Aligned_cols=88 Identities=33% Similarity=0.470 Sum_probs=81.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+......++|||+|||..+++++|+.+|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 34456678999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
|.++.++.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99997653
No 19
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=7.2e-20 Score=114.68 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=80.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.......++|||+|||..+++++|+++|..|| |..+.|..+..++.++|||||+|.+.++|.+|+ .|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34456678999999999999999999999997 999999999989999999999999999999999 7999999999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999865443
No 20
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=117.24 Aligned_cols=86 Identities=23% Similarity=0.336 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||..+++++|+++|..||.|..+.|..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 032319 109 PAKSRE 114 (143)
Q Consensus 109 ~~~~~~ 114 (143)
+++...
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998654
No 21
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=118.65 Aligned_cols=82 Identities=18% Similarity=0.387 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceeCCeEEEEeeC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMN-AKYLDGWVIFVDPA 110 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-~~~l~~~~l~v~~~ 110 (143)
+.+|||+|||..+++++|+++|++|| .|.+++|+.++.++.++|||||+|.+.++|.+|++.++ +..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999875 45799999999999
Q ss_pred CCCC
Q 032319 111 KSRE 114 (143)
Q Consensus 111 ~~~~ 114 (143)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7653
No 22
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=115.05 Aligned_cols=86 Identities=28% Similarity=0.404 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRA---TGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
.+.++|||+|||..+++++|+++|+.||.|..+.+..+.. ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998775 5689999999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032319 108 DPAKSREAR 116 (143)
Q Consensus 108 ~~~~~~~~~ 116 (143)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999865543
No 23
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.9e-20 Score=113.47 Aligned_cols=84 Identities=26% Similarity=0.407 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
....+.++|||+|||..+++++|+++|..||.|..+.+..++.++.+++||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCC
Q 032319 108 DPAK 111 (143)
Q Consensus 108 ~~~~ 111 (143)
++++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 24
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=117.10 Aligned_cols=89 Identities=38% Similarity=0.596 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
....+..+|||+|||..+++++|+++|..||.|..+.+..+..++.+++||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032319 108 DPAKSREAR 116 (143)
Q Consensus 108 ~~~~~~~~~ 116 (143)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999866543
No 25
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=114.94 Aligned_cols=86 Identities=29% Similarity=0.543 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYS-KVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~-~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
...++|||+|||..+++++|+++|+.||.|..+ .+..++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999888899999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 032319 110 AKSREAR 116 (143)
Q Consensus 110 ~~~~~~~ 116 (143)
+.++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9865533
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.4e-20 Score=113.83 Aligned_cols=85 Identities=33% Similarity=0.493 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
....+.++|||+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCCC
Q 032319 108 DPAKS 112 (143)
Q Consensus 108 ~~~~~ 112 (143)
.++++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99863
No 27
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-19 Score=116.02 Aligned_cols=87 Identities=38% Similarity=0.534 Sum_probs=80.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+......++|||+|||..+++++|+++|..||.|..+.|..++.++.+++||||+|.+.++|++|++.+++ .+.++.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 44566789999999999999999999999999999999999988899999999999999999999999998 89999999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
|+++....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997654
No 28
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.9e-20 Score=116.85 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=82.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCee--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLV--------YSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK 98 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 98 (143)
.......++|||+|||..+++++|+++|..||.|. .+.|..++.++.++|||||+|.+.++|.+|+..|++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34567789999999999999999999999999998 6999999888999999999999999999999999999
Q ss_pred eeCCeEEEEeeCCCCCCC
Q 032319 99 YLDGWVIFVDPAKSREAR 116 (143)
Q Consensus 99 ~l~~~~l~v~~~~~~~~~ 116 (143)
.+.|+.|+|.+++++...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999866543
No 29
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=113.15 Aligned_cols=83 Identities=37% Similarity=0.558 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.+..+|||+|||..+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|..|+..|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCC
Q 032319 111 KSR 113 (143)
Q Consensus 111 ~~~ 113 (143)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 30
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=4.7e-20 Score=123.61 Aligned_cols=87 Identities=30% Similarity=0.309 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|+.||.|..|.|..++.++.+++||||+|.+.++|.+|+..|++..|.++.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34577899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032319 109 PAKSREA 115 (143)
Q Consensus 109 ~~~~~~~ 115 (143)
++.+...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9986544
No 31
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7e-20 Score=114.91 Aligned_cols=87 Identities=22% Similarity=0.330 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRAT-GRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
...+..+|||+|||..+++++|+++|..|| |..+.|..+..+ +.++|||||+|.+.++|.+|+ .|++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445678999999999999999999999999 999999999887 899999999999999999999 89999999999999
Q ss_pred eeCCCCCCCC
Q 032319 108 DPAKSREARP 117 (143)
Q Consensus 108 ~~~~~~~~~~ 117 (143)
.++.++....
T Consensus 89 ~~a~~~~~~~ 98 (104)
T 1wi8_A 89 DVADQAQDKD 98 (104)
T ss_dssp EECCCCCCCC
T ss_pred EEccCCCCCC
Confidence 9998765443
No 32
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=1.2e-19 Score=113.94 Aligned_cols=86 Identities=26% Similarity=0.366 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---eEEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG---WVIF 106 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~---~~l~ 106 (143)
....++|||+|||..+++++|+.+|..||.|..+.|..+. ++.++|||||+|.+.++|.+|+..|++..+.+ +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4567999999999999999999999999999999999987 69999999999999999999999999999988 9999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++.++..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876544
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=3.4e-20 Score=112.13 Aligned_cols=82 Identities=35% Similarity=0.517 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
..+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45778999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred CC
Q 032319 110 AK 111 (143)
Q Consensus 110 ~~ 111 (143)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 34
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=2.9e-20 Score=121.19 Aligned_cols=89 Identities=31% Similarity=0.477 Sum_probs=82.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 26 RYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 26 ~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
......+.++|||+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|++|+..|++..+.|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456778899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 032319 106 FVDPAKSRE 114 (143)
Q Consensus 106 ~v~~~~~~~ 114 (143)
+|.++.++.
T Consensus 119 ~V~~a~~~~ 127 (129)
T 2kxn_B 119 RVDFSITKR 127 (129)
T ss_dssp EESCCSSSS
T ss_pred EEEEecCCC
Confidence 999998654
No 35
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=7.4e-20 Score=113.85 Aligned_cols=87 Identities=29% Similarity=0.316 Sum_probs=80.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 032319 25 IRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVY--------SKVITDRATGRSKGFGFVSYTSIEEAERAREGMN 96 (143)
Q Consensus 25 ~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 96 (143)
..+.......+|||+|||..+++++|+++|+.||.|.. +.+..++.+|.++|||||+|.+.++|.+|++.|+
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34456677899999999999999999999999999999 9999998899999999999999999999999999
Q ss_pred CceeCCeEEEEeeCC
Q 032319 97 AKYLDGWVIFVDPAK 111 (143)
Q Consensus 97 ~~~l~~~~l~v~~~~ 111 (143)
+..+.|+.|+|.+++
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999999874
No 36
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.7e-20 Score=116.47 Aligned_cols=90 Identities=28% Similarity=0.410 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL---DGWV 104 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l---~~~~ 104 (143)
.......+|||+|||..+++++|+++|..||.|..+.|..++.++.++|||||+|.+.++|.+|+..|++..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456778999999999999999999999999999999999988899999999999999999999999999987 8899
Q ss_pred EEEeeCCCCCCCC
Q 032319 105 IFVDPAKSREARP 117 (143)
Q Consensus 105 l~v~~~~~~~~~~ 117 (143)
|.|.++.++....
T Consensus 88 l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 88 IQVKPADSESRGG 100 (106)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEECCcccccC
Confidence 9999998765443
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=4.8e-20 Score=117.86 Aligned_cols=82 Identities=37% Similarity=0.620 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
...+|||+|||+.+++++|+++|+.||.|..++|..+. +.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999985 5589999999999999999999999999999999999988
Q ss_pred CCCC
Q 032319 112 SREA 115 (143)
Q Consensus 112 ~~~~ 115 (143)
++..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6543
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=6.3e-21 Score=116.85 Aligned_cols=80 Identities=30% Similarity=0.449 Sum_probs=72.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFG--QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g--~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
.+|||+|||+.+++++|+++|+.|| .|..+.+..++.+|+++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999899999999999999999999999999999999999999997
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 39
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-19 Score=118.81 Aligned_cols=89 Identities=26% Similarity=0.377 Sum_probs=82.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......++|||+|||..+++++|+++|+.||.|..+.|..++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032319 108 DPAKSREAR 116 (143)
Q Consensus 108 ~~~~~~~~~ 116 (143)
.+++++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999866544
No 40
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7e-20 Score=114.82 Aligned_cols=87 Identities=31% Similarity=0.366 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcC-CCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCeEEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAP-FGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKY-LDGWVIF 106 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~-~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-l~~~~l~ 106 (143)
...+..+|||+|||..+++++|+++|.. ||.|..+.|..+. ++.++|||||+|.+.++|.+|+..|++.. +.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4567789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999765543
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=6.6e-20 Score=113.45 Aligned_cols=83 Identities=20% Similarity=0.395 Sum_probs=78.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
+.++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCC
Q 032319 112 SRE 114 (143)
Q Consensus 112 ~~~ 114 (143)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 42
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-19 Score=111.52 Aligned_cols=88 Identities=33% Similarity=0.529 Sum_probs=79.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.......++|||+|||..+++++|+++|..||.|..+.|..+.. .+++||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44567789999999999999999999999999999999998853 3889999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cq3_A 87 VNNATARVMT 96 (103)
T ss_dssp EEECCSSCCC
T ss_pred EEEcccCCCC
Confidence 9999866433
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=4.2e-20 Score=116.99 Aligned_cols=88 Identities=26% Similarity=0.408 Sum_probs=81.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+......++|||+|||..+++++|+.+|+.||.|..+.+..+..++.++|||||+|.+.++|..|+..|++..+.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 33456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
|.++.++.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998654
No 44
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=9.5e-20 Score=115.29 Aligned_cols=88 Identities=32% Similarity=0.526 Sum_probs=81.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+......++|||+|||..+++++|+.+|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
|++++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998653
No 45
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.1e-20 Score=115.35 Aligned_cols=88 Identities=30% Similarity=0.483 Sum_probs=81.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.......++|||+|||..+++++|+++|..||.|..+.|..++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34567789999999999999999999999999999999999988899999999999999999999998 99999999999
Q ss_pred EeeCCCCCC
Q 032319 107 VDPAKSREA 115 (143)
Q Consensus 107 v~~~~~~~~ 115 (143)
|.++.++..
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999986543
No 46
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-19 Score=112.33 Aligned_cols=87 Identities=23% Similarity=0.308 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......++|||+|||..+++++|+++|..||.|..+.|..++. .+++||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3456789999999999999999999999999999999999854 36899999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032319 108 DPAKSREAR 116 (143)
Q Consensus 108 ~~~~~~~~~ 116 (143)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999875543
No 47
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=4.3e-20 Score=119.63 Aligned_cols=90 Identities=32% Similarity=0.457 Sum_probs=83.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+.......+|||+|||..+++++|+.+|..||.|..+.|..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 44556678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++.++..+
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999866544
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=114.94 Aligned_cols=83 Identities=24% Similarity=0.369 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCC--eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQ--LVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK----YLDGW 103 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~--i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~l~~~ 103 (143)
...=.+|||+|||+.+++++|+++|++||. +..+++.+++.+|.++|||||+|.+.++|.+|++.|++. .+.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 344578999999999999999999999995 678999999999999999999999999999999999986 58999
Q ss_pred EEEEeeCCC
Q 032319 104 VIFVDPAKS 112 (143)
Q Consensus 104 ~l~v~~~~~ 112 (143)
+|.|.++++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 49
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=113.71 Aligned_cols=85 Identities=27% Similarity=0.421 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCee-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE---
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLV-YSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV--- 104 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~-~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~--- 104 (143)
.....++|||+|||..+++++|+++|..||.|. .+.+..++.++.++|||||+|.+.++|++|+..|++..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456779999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred -EEEeeCCCC
Q 032319 105 -IFVDPAKSR 113 (143)
Q Consensus 105 -l~v~~~~~~ 113 (143)
|+|.++++.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998754
No 50
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-19 Score=112.94 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 24 SIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 24 ~~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
..........++|||+|||..+++++|+++|..||.|..+.|..+ +.+++||||+|.+.++|.+|++.|++..+.++
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 13 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 334445667789999999999999999999999999999998554 55789999999999999999999999999999
Q ss_pred EEEEeeCCCCC
Q 032319 104 VIFVDPAKSRE 114 (143)
Q Consensus 104 ~l~v~~~~~~~ 114 (143)
.|.|.++++..
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 99999998654
No 51
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=8.6e-20 Score=110.94 Aligned_cols=84 Identities=23% Similarity=0.429 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGR-SKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....+|||+|||..+++++|+++|++||.|..+.+..+..++. ++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999999999877665 899999999999999999999999999999999999
Q ss_pred CCCCC
Q 032319 110 AKSRE 114 (143)
Q Consensus 110 ~~~~~ 114 (143)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87543
No 52
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.5e-19 Score=110.22 Aligned_cols=87 Identities=32% Similarity=0.497 Sum_probs=79.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
........+|||+|||..+++++|+.+|..||.|..+.|..++.++.++|||||+|.+.++|.+|+. +++.+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 4456677899999999999999999999999999999999998889999999999999999999999 47899999999
Q ss_pred EeeCCCCCC
Q 032319 107 VDPAKSREA 115 (143)
Q Consensus 107 v~~~~~~~~ 115 (143)
|.++.++..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987654
No 53
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=9.1e-20 Score=116.81 Aligned_cols=84 Identities=32% Similarity=0.417 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......++|||+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCC
Q 032319 108 DPAK 111 (143)
Q Consensus 108 ~~~~ 111 (143)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 54
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=2.7e-19 Score=108.70 Aligned_cols=82 Identities=34% Similarity=0.566 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 345678899999999999999999999999999999999998899999999999999999999997 5888999999999
Q ss_pred eeC
Q 032319 108 DPA 110 (143)
Q Consensus 108 ~~~ 110 (143)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.82 E-value=1.8e-19 Score=110.51 Aligned_cols=85 Identities=32% Similarity=0.409 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|..||.|..+.+..+ ++.+++||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999874 68899999999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032319 109 PAKSREA 115 (143)
Q Consensus 109 ~~~~~~~ 115 (143)
++++...
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9986543
No 56
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.8e-19 Score=113.59 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH---HhhcCCCCeeEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLK---EAFAPFGQLVYSKVITDRATG---RSKGFGFVSYTSIEEAERAREGMNAKYLD 101 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~---~~f~~~g~i~~~~l~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~l~ 101 (143)
....+..+|||+|||+.+++++|+ ++|.+||.|..+.+..+..++ .++|||||+|.+.++|++|++.|++..+.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345677899999999999999999 999999999999998887644 45699999999999999999999999999
Q ss_pred CeEEEEeeCCCCC
Q 032319 102 GWVIFVDPAKSRE 114 (143)
Q Consensus 102 ~~~l~v~~~~~~~ 114 (143)
|+.|+|.++.++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998664
No 57
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=112.14 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||..+++++|+++|..||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999888888888889999999999999999999999999999999999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98743
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=2.2e-19 Score=109.38 Aligned_cols=81 Identities=20% Similarity=0.428 Sum_probs=76.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
..++|||+|||..+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+ .+++..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3579999999999999999999999999999999999888999999999999999999999 899999999999999987
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 59
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=2.7e-19 Score=112.63 Aligned_cols=84 Identities=31% Similarity=0.356 Sum_probs=78.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+.......+|||+|||..+++++|+++|..||.|..+.|..+. ++.++|||||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3345677899999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred EeeCC
Q 032319 107 VDPAK 111 (143)
Q Consensus 107 v~~~~ 111 (143)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 60
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=115.51 Aligned_cols=86 Identities=35% Similarity=0.563 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....++|||+|||..+++++|+.+|..||.|..+.|..++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34458999999999999999999999999999999999988899999999999999999999997 99999999999999
Q ss_pred CCCCCCC
Q 032319 110 AKSREAR 116 (143)
Q Consensus 110 ~~~~~~~ 116 (143)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9876543
No 61
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=2.8e-19 Score=113.27 Aligned_cols=88 Identities=32% Similarity=0.435 Sum_probs=76.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.......++|||+|||..+++++|+.+|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|+..+ +..+.|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 345667899999999999999999999999999999999999888999999999999999999999975 5899999999
Q ss_pred EeeCCCCCC
Q 032319 107 VDPAKSREA 115 (143)
Q Consensus 107 v~~~~~~~~ 115 (143)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999986543
No 62
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=111.09 Aligned_cols=83 Identities=29% Similarity=0.366 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......++|||+|||..+++++|+++|..||.|..+.+..+.. +.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3456678999999999999999999999999999999999875 889999999999999999999999999999999999
Q ss_pred eeCC
Q 032319 108 DPAK 111 (143)
Q Consensus 108 ~~~~ 111 (143)
.+++
T Consensus 90 ~~a~ 93 (95)
T 2ywk_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 9886
No 63
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=5.5e-19 Score=114.15 Aligned_cols=85 Identities=31% Similarity=0.353 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 032319 109 PAKSRE 114 (143)
Q Consensus 109 ~~~~~~ 114 (143)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997654
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=110.94 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLK----EAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~----~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
.....+|||+|||..+++++|+ ++|++||.|..+.+..++.+ ++||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456799999999999999999 99999999999999988654 7899999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 032319 106 FVDPAKSRE 114 (143)
Q Consensus 106 ~v~~~~~~~ 114 (143)
+|.++++..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997554
No 65
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.2e-19 Score=109.65 Aligned_cols=85 Identities=29% Similarity=0.440 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......++|||+|||..+++++|+++|.+||.| .+..+ .++.++|||||+|.+.++|++|+..|++..+.++.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345678999999999999999999999999976 45555 56889999999999999999999999999999999999
Q ss_pred eeCCCCCCC
Q 032319 108 DPAKSREAR 116 (143)
Q Consensus 108 ~~~~~~~~~ 116 (143)
.++.++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999876433
No 66
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-20 Score=115.28 Aligned_cols=85 Identities=32% Similarity=0.536 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 032319 110 AKSRE 114 (143)
Q Consensus 110 ~~~~~ 114 (143)
+.++.
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 98654
No 67
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=7.1e-20 Score=119.55 Aligned_cols=87 Identities=28% Similarity=0.397 Sum_probs=80.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----ee
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVY--SKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK----YL 100 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~--~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~l 100 (143)
+.......+|||+|||+.+++++|+++|..||.|.. ++|+.++.+|+++|||||+|.+. +|.+|+..|++. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 444567789999999999999999999999999966 99999998999999999999999 999999999999 99
Q ss_pred CCeEEEEeeCCCCC
Q 032319 101 DGWVIFVDPAKSRE 114 (143)
Q Consensus 101 ~~~~l~v~~~~~~~ 114 (143)
.|+.|.|.+++++.
T Consensus 96 ~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 96 DGKTINVEFAKGSK 109 (131)
T ss_dssp GGCCCCCEECCCSC
T ss_pred CCEEEEEEECCCCC
Confidence 99999999998654
No 68
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=5e-20 Score=115.00 Aligned_cols=83 Identities=27% Similarity=0.373 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-e
Q 032319 31 LTSPRLFVSGLSR------LTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG-W 103 (143)
Q Consensus 31 ~~~~~v~v~~l~~------~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~-~ 103 (143)
...++|||+|||. .+++++|+++|++||.|..+.|..++.||+++|||||+|.+.++|.+|+..|++..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4467999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEeeCCCC
Q 032319 104 VIFVDPAKSR 113 (143)
Q Consensus 104 ~l~v~~~~~~ 113 (143)
.|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998643
No 69
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=121.15 Aligned_cols=82 Identities=29% Similarity=0.402 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFG--QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g--~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
...+|||+|||+.+++++|+++|..|| .|..++|..++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 032319 110 AKSR 113 (143)
Q Consensus 110 ~~~~ 113 (143)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 70
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=3.3e-19 Score=119.55 Aligned_cols=87 Identities=28% Similarity=0.387 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
.......+|||+|||..+++++|+.+|+.||.|..+.|..++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34466789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
.++.+..
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9998654
No 71
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-20 Score=118.78 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
...++|||+|||..+++++|+++|..||.|..+.|..++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45589999999999999999999999999999999999888999999999999999999999 89999999999999998
Q ss_pred CCCC
Q 032319 111 KSRE 114 (143)
Q Consensus 111 ~~~~ 114 (143)
.++.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 72
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-18 Score=105.98 Aligned_cols=82 Identities=28% Similarity=0.397 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||..+++++|+++|..| .|..+.|..+ .+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 35667899999999999999999999999 8999999998 679999999999999999999999 99999999999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
++.++
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98755
No 73
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-18 Score=107.58 Aligned_cols=85 Identities=44% Similarity=0.610 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|..|+ .+.++.+..++.+++||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456779999999999999999999999874 67788887789999999999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 032319 109 PAKSREAR 116 (143)
Q Consensus 109 ~~~~~~~~ 116 (143)
+++++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876544
No 74
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.3e-20 Score=110.51 Aligned_cols=82 Identities=29% Similarity=0.487 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
..+.++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.|++..+.++.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999998887765
Q ss_pred CC
Q 032319 110 AK 111 (143)
Q Consensus 110 ~~ 111 (143)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 75
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.4e-19 Score=111.41 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=73.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNA--KYLDGWV 104 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~l~~~~ 104 (143)
..+..+..+|||+|||+.+++++|+++|++||.|..+.|+.+ +|||||+|.+.++|..|++.+++ ..+.|++
T Consensus 10 ~~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 10 HGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp --CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 445678899999999999999999999999999999998764 68999999999999999998864 6899999
Q ss_pred EEEeeCCCCCCC
Q 032319 105 IFVDPAKSREAR 116 (143)
Q Consensus 105 l~v~~~~~~~~~ 116 (143)
|.|.+++.+...
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999865433
No 76
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=2.4e-19 Score=110.52 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
....+|||+|||..+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999988888888888999999999999999999999999999999999999987
Q ss_pred C
Q 032319 111 K 111 (143)
Q Consensus 111 ~ 111 (143)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 77
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=9.4e-19 Score=112.95 Aligned_cols=81 Identities=19% Similarity=0.426 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
..++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|..|+ .|++..+.|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4589999999999999999999999999999999999888999999999999999999999 799999999999999987
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 78
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-18 Score=106.36 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh--CCceeCCeEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM--NAKYLDGWVI 105 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~l~~~~l 105 (143)
....+..+|||+|||+.+++++|+.+|.+||.|..+.+..+ +|||||+|.+.++|..|++.| ++..+.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 34567789999999999999999999999999999988764 689999999999999999977 4678999999
Q ss_pred EEeeCCCCCCC
Q 032319 106 FVDPAKSREAR 116 (143)
Q Consensus 106 ~v~~~~~~~~~ 116 (143)
.|.+++.+...
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999866544
No 79
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=9.6e-19 Score=110.65 Aligned_cols=83 Identities=29% Similarity=0.442 Sum_probs=72.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 24 SIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 24 ~~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
...........+|||+|||..+++++|+.+|+.||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3344556778999999999999999999999999999999886 57999999999999999999999999999
Q ss_pred EEEEeeCCCCC
Q 032319 104 VIFVDPAKSRE 114 (143)
Q Consensus 104 ~l~v~~~~~~~ 114 (143)
.|.|.+++++.
T Consensus 94 ~l~V~~a~~~~ 104 (108)
T 2jvo_A 94 PLEVVYSKLPA 104 (108)
T ss_dssp ECEEESCSCCC
T ss_pred EEEEEEecCCC
Confidence 99999998654
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8e-19 Score=111.13 Aligned_cols=88 Identities=31% Similarity=0.534 Sum_probs=78.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 24 SIRYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 24 ~~~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
+.........++|||+|||..+++++|+++|++||.|..+.+..+. +.++|||||+|.+.++|.+|+..|++..+.|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3334456778999999999999999999999999999999998885 45899999999999999999999999999999
Q ss_pred EEEEeeCCCC
Q 032319 104 VIFVDPAKSR 113 (143)
Q Consensus 104 ~l~v~~~~~~ 113 (143)
.|.|+++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998754
No 81
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=114.21 Aligned_cols=84 Identities=35% Similarity=0.487 Sum_probs=78.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
........+|||+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33456789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EeeC
Q 032319 107 VDPA 110 (143)
Q Consensus 107 v~~~ 110 (143)
|.++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9874
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=9.5e-19 Score=118.36 Aligned_cols=89 Identities=26% Similarity=0.405 Sum_probs=80.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+......++|||+|||..+++++|+.+|..||.|..|.|..++.+|.++|||||+|.+.++|..||..|++..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33455667899999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeeCCCCCC
Q 032319 107 VDPAKSREA 115 (143)
Q Consensus 107 v~~~~~~~~ 115 (143)
|.++.++..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999986543
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.6e-19 Score=110.68 Aligned_cols=86 Identities=27% Similarity=0.345 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQ-LVYSKVI-TDRATGRSKGFGFVSYTSIEEAERAREGMN--AKYLDGWVIF 106 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~-i~~~~l~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~l~~~~l~ 106 (143)
...++|||+|||..+++++|+++|..||. |..+.+. .+..++.++|||||+|.+.++|..|+..|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999988 777788999999999999999999999996 5899999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876543
No 84
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-18 Score=108.36 Aligned_cols=85 Identities=22% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCe
Q 032319 26 RYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK--YLDGW 103 (143)
Q Consensus 26 ~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~l~~~ 103 (143)
++....+..+|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.|++. .+.|+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3445567789999999999999999999999999999988653 679999999999999999988654 59999
Q ss_pred EEEEeeCCCCCCC
Q 032319 104 VIFVDPAKSREAR 116 (143)
Q Consensus 104 ~l~v~~~~~~~~~ 116 (143)
+|.|.+++.+...
T Consensus 82 ~l~V~~a~~~~~~ 94 (104)
T 1wex_A 82 QAFFNYSTSKRIT 94 (104)
T ss_dssp BCEEEECSSSSCC
T ss_pred EEEEEEccCcccc
Confidence 9999999866543
No 85
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=9.8e-19 Score=108.84 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=72.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCe
Q 032319 26 RYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKY--LDGW 103 (143)
Q Consensus 26 ~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--l~~~ 103 (143)
+.....+..+|||+|||+.+++++|+.+|++||.|..+.+++. +|+|||+|.+.++|.+|++.|++.. +.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 3445567889999999999999999999999999999988753 6799999999999999999998874 7899
Q ss_pred EEEEeeCCCCC
Q 032319 104 VIFVDPAKSRE 114 (143)
Q Consensus 104 ~l~v~~~~~~~ 114 (143)
+|.|.+++.+.
T Consensus 88 ~i~V~~S~~k~ 98 (100)
T 3r27_A 88 PAFVNYSTSQK 98 (100)
T ss_dssp EEEEEECSCSC
T ss_pred EEEEEeccccc
Confidence 99999998653
No 86
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=4.4e-18 Score=106.51 Aligned_cols=82 Identities=32% Similarity=0.437 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
...+.++|||+|||..+++++|+++|..||.|..+.+. ++||||+|.+.++|.+|+..|++..+.++.|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567899999999999999999999999999999885 3499999999999999999999999999999999
Q ss_pred eCCCCCCCCC
Q 032319 109 PAKSREARPP 118 (143)
Q Consensus 109 ~~~~~~~~~~ 118 (143)
++.++.....
T Consensus 79 ~a~~~~~~~~ 88 (103)
T 2dgu_A 79 FAKPPDQKRK 88 (103)
T ss_dssp ECCCCCCCCC
T ss_pred EcCCCcccch
Confidence 9987654433
No 87
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=2.7e-19 Score=117.44 Aligned_cols=87 Identities=28% Similarity=0.392 Sum_probs=80.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......++|||+|||..+++++|+++|+.||.|..+.|..++.++.++|||||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
.++++..
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998654
No 88
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-18 Score=105.30 Aligned_cols=80 Identities=25% Similarity=0.461 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|++||.|..+.+. ++||||+|.+.++|.+|+..|++..+.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567899999999999999999999999999999886 4699999999999999999999999999999999
Q ss_pred eCCCCCCC
Q 032319 109 PAKSREAR 116 (143)
Q Consensus 109 ~~~~~~~~ 116 (143)
++.++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99865443
No 89
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.3e-19 Score=109.81 Aligned_cols=80 Identities=15% Similarity=0.202 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc--eeCCeEE
Q 032319 29 STLTSPRLFVSGLSR-LTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK--YLDGWVI 105 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~-~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~l~~~~l 105 (143)
...+..+|||+|||+ .+++++|+.+|.+||.|..+.|+.+ ++||||+|.+.++|..|++.|++. .+.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345678999999999 9999999999999999999998765 469999999999999999988864 5999999
Q ss_pred EEeeCCCCC
Q 032319 106 FVDPAKSRE 114 (143)
Q Consensus 106 ~v~~~~~~~ 114 (143)
.|.+++...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998654
No 90
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=108.46 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||+.+++++|+++|..|| +..+.|+.++ +++++|||||+|.+.++|++|+. +++..+.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 456678999999999999999999999999 5599999997 79999999999999999999995 79999999999999
Q ss_pred eCCCCC
Q 032319 109 PAKSRE 114 (143)
Q Consensus 109 ~~~~~~ 114 (143)
.+....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887544
No 91
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-18 Score=108.78 Aligned_cols=85 Identities=22% Similarity=0.460 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-------
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL------- 100 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l------- 100 (143)
.......+|||+|||..+++++|+.+|..||.|..+.|..+. ++.++|||||+|.+.++|..|+..|++..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345677899999999999999999999999999999999997 899999999999999999999999999998
Q ss_pred -CCeEEEEeeCCCC
Q 032319 101 -DGWVIFVDPAKSR 113 (143)
Q Consensus 101 -~~~~l~v~~~~~~ 113 (143)
.+++|.|.++.+.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999988743
No 92
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=108.68 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=72.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
++|||+|||..+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999998876 5789999999999999999999999999999999999876
Q ss_pred CCC
Q 032319 114 EAR 116 (143)
Q Consensus 114 ~~~ 116 (143)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=2.8e-19 Score=105.73 Aligned_cols=75 Identities=32% Similarity=0.535 Sum_probs=71.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 35 ~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
+|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 8999999999999864
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=111.09 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDR-ATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
......++|||+|||..+++++|+++|+.|| |..+.|..+. .+|+++|||||+|.+.++|.+|+ .|++..+.|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3457779999999999999999999999999 9999999987 58999999999999999999999 7999999999999
Q ss_pred EeeCCCC
Q 032319 107 VDPAKSR 113 (143)
Q Consensus 107 v~~~~~~ 113 (143)
|.++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998754
No 95
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=108.03 Aligned_cols=84 Identities=23% Similarity=0.230 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVY-SKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~-~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......+|||+|||+.+++++|+++|..||.|.. +.|..+ .+++++|||||+|.+.++|++|+.. ++..+.++.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3466789999999999999999999999999987 888887 6799999999999999999999997 999999999999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
..+..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9886543
No 96
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9e-18 Score=106.01 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-----e
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG-----W 103 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~-----~ 103 (143)
......+|||+|||+.+++++|+++|..||.|..+.|..+ +||||+|.+.++|++|++.|++..+.+ +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999998765 699999999999999999999999999 9
Q ss_pred EEEEeeCCCCC
Q 032319 104 VIFVDPAKSRE 114 (143)
Q Consensus 104 ~l~v~~~~~~~ 114 (143)
.|+|.++.++.
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 99999998654
No 97
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=110.50 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.....+|||+|||+.+++++|+.+|++||.|..+.|..+.. +.++|||||+|.+.++|..|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 45568999999999999999999999999999999999977 9999999999999999999999 899999999999997
Q ss_pred CCC
Q 032319 110 AKS 112 (143)
Q Consensus 110 ~~~ 112 (143)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 654
No 98
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-19 Score=115.16 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCe-eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQL-VYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i-~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......+|||+|||+.+++++|+++|..||.| ..+.|+.+. ++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 45667899999999999999999999999999 889999987 899999999999999999999997 999999999999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
.++..+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9988654
No 99
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-18 Score=105.88 Aligned_cols=82 Identities=28% Similarity=0.396 Sum_probs=74.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC--CeE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD--GWV 104 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~--~~~ 104 (143)
.....+.++|||+|||..+++++|+++|+.||.|..+.+..+ ++||||+|.+.++|++|++.|++..+. ++.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 445567789999999999999999999999999999988654 679999999999999999999999999 999
Q ss_pred EEEeeCCCCC
Q 032319 105 IFVDPAKSRE 114 (143)
Q Consensus 105 l~v~~~~~~~ 114 (143)
|+|.+++++.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998653
No 100
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.5e-19 Score=113.02 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=74.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCe----eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQL----VYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i----~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
....+.++|||+|||..+++++|+.+|..||.| ..+.+. ++.++|||||+|.+.++|..|+..|++..+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 344567899999999999999999999999988 444443 688899999999999999999999999999999
Q ss_pred EEEEeeCCCCCCC
Q 032319 104 VIFVDPAKSREAR 116 (143)
Q Consensus 104 ~l~v~~~~~~~~~ 116 (143)
.|.|.++.++..+
T Consensus 96 ~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 96 ILVIEFGKNKKQR 108 (115)
T ss_dssp BCEEEECCCCSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999876544
No 101
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.8e-18 Score=103.52 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|+.||.|..+.+.. +||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 456778999999999999999999999999999998863 399999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032319 109 PAKSREA 115 (143)
Q Consensus 109 ~~~~~~~ 115 (143)
++.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9986543
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-19 Score=105.07 Aligned_cols=76 Identities=34% Similarity=0.502 Sum_probs=72.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999988 9999999999876
No 103
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1e-19 Score=111.26 Aligned_cols=80 Identities=31% Similarity=0.495 Sum_probs=73.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.+ |.+|+..|++..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999888999999999999999 99999999999999999999998754
Q ss_pred C
Q 032319 114 E 114 (143)
Q Consensus 114 ~ 114 (143)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 104
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.6e-18 Score=104.95 Aligned_cols=81 Identities=27% Similarity=0.356 Sum_probs=73.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
....+.++|||+|||..+++++|+++|..||.|..+.+..+ ++||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34566789999999999999999999999999999998754 679999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
.+++++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9998654
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-18 Score=109.14 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNA--KYLDGWVIF 106 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~l~~~~l~ 106 (143)
...+..+|||+|||+.+++++|+++|++||.|..+.|+.+ +|||||+|.+.++|.+|+..+++ ..+.|++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456789999999999999999999999999999998765 68999999999999999998874 579999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.+++.+...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999866544
No 106
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-18 Score=107.44 Aligned_cols=81 Identities=26% Similarity=0.486 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+.+|..||.|..+.+..+ ++||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999998775 6799999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032319 109 PAKSREA 115 (143)
Q Consensus 109 ~~~~~~~ 115 (143)
+++++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9986543
No 107
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=3.2e-18 Score=109.85 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQ---LVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~---i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
.....++|||+|||+.+++++|+++|..||. |..++|..+.. |+++|||||+|.+.++|++|+. +++..|.++.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999998 89999999876 9999999999999999999999 89999999999
Q ss_pred EEeeCCCC
Q 032319 106 FVDPAKSR 113 (143)
Q Consensus 106 ~v~~~~~~ 113 (143)
.|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998754
No 108
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=3e-18 Score=103.66 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
...+..|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.++++|.+|++.||+..+.|+.|+|..
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 34577899999999999999999999999999999855 578999999999999999999999999999999998
Q ss_pred CC
Q 032319 110 AK 111 (143)
Q Consensus 110 ~~ 111 (143)
+.
T Consensus 78 A~ 79 (89)
T 2wbr_A 78 PS 79 (89)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 109
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-17 Score=102.29 Aligned_cols=81 Identities=28% Similarity=0.400 Sum_probs=72.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhcCC--CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 26 RYNSTLTSPRLFVSGLSRLTTDEKLKEAFAPF--GQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 26 ~~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~--g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
+.......++|||+|||..+++++|+.+|..| |.|..+.+. ++||||+|.+.++|.+|+..|++..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34445677899999999999999999999999 899888763 46999999999999999999999999999
Q ss_pred EEEEeeCCCCC
Q 032319 104 VIFVDPAKSRE 114 (143)
Q Consensus 104 ~l~v~~~~~~~ 114 (143)
.|+|.+++++.
T Consensus 80 ~l~v~~a~~~~ 90 (99)
T 2cpd_A 80 PIEVTLAKPVD 90 (99)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCC
Confidence 99999998654
No 110
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=104.77 Aligned_cols=81 Identities=26% Similarity=0.368 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQ-LVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNA-KYLDGWVIF 106 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~-i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~l~~~~l~ 106 (143)
.....++|||+|||..+++++|+++|.+||. +..+.+. +++||||+|.+.++|.+|+..|++ ..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999998 5555552 367999999999999999999999 999999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++.++..+
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999866443
No 111
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=1.6e-18 Score=123.10 Aligned_cols=81 Identities=30% Similarity=0.448 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFG--QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g--~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
...+|||+||++.+++++|+++|..|| .|..|+|+.++.+++++|||||+|.+.++|.+||..|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 032319 110 AKS 112 (143)
Q Consensus 110 ~~~ 112 (143)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 764
No 112
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=3.2e-18 Score=112.41 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=76.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQ---LVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~---i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
......+|||+|||+.+++++|+++|..||. |..+.|..++. |+++|||||+|.+.++|++|+. +++..+.++.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 4566789999999999999999999999998 88999999977 9999999999999999999999 99999999999
Q ss_pred EEeeCCCC
Q 032319 106 FVDPAKSR 113 (143)
Q Consensus 106 ~v~~~~~~ 113 (143)
.|..+..+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99988643
No 113
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-19 Score=111.82 Aligned_cols=85 Identities=26% Similarity=0.345 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||..+++++|+.+|..||.|.. .++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999998877 555665678899999999999999999999 99999999999999
Q ss_pred eCCCCCC
Q 032319 109 PAKSREA 115 (143)
Q Consensus 109 ~~~~~~~ 115 (143)
++.++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9986543
No 114
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=112.22 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||+.+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|.+|+. +++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 45567899999999999999999999999999886666666789999999999999999999999 99999999999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 115
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=101.16 Aligned_cols=78 Identities=24% Similarity=0.385 Sum_probs=71.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGM-NAKYLDGWVIF 106 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~l~~~~l~ 106 (143)
......++|||+|||..+++++|+++|.+||.|..+.+..+ +|||||+|.+.++|..|+..| ++..+.|++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34567789999999999999999999999999999998764 679999999999999999998 99999999999
Q ss_pred EeeCC
Q 032319 107 VDPAK 111 (143)
Q Consensus 107 v~~~~ 111 (143)
|.+++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 116
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=107.18 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 30 TLTSPRLFVSGLSRLT------TDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~------~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
....++|||+|||..+ ++++|+.+|++||.|..+.|. ..+|.++|||||+|.+.++|.+|+..|++..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3446899999999999 789999999999999999887 35789999999999999999999999999999998
Q ss_pred -EEEEeeCCCC
Q 032319 104 -VIFVDPAKSR 113 (143)
Q Consensus 104 -~l~v~~~~~~ 113 (143)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998743
No 117
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=1.5e-17 Score=105.27 Aligned_cols=78 Identities=23% Similarity=0.431 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 29 STLTSPRLFVSGLSRL-TTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~-~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
.....++|||+|||.. +++++|+++|.+||.|..+.+ +++||||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445589999999999 999999999999999999988 4679999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
.+++...
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9997543
No 118
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=1.1e-17 Score=116.61 Aligned_cols=84 Identities=26% Similarity=0.479 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
....+|||+|||..+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45589999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCC
Q 032319 111 KSRE 114 (143)
Q Consensus 111 ~~~~ 114 (143)
.++.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8654
No 119
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=2.1e-17 Score=127.12 Aligned_cols=85 Identities=24% Similarity=0.466 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.....+|||+|||..+++++|+.+|.+||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 032319 110 AKSRE 114 (143)
Q Consensus 110 ~~~~~ 114 (143)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98654
No 120
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=110.50 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLK----EAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~----~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
..+..+|||+|||+.+++++|+ .+|++||.|..|.+.. +++++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4557899999999999999876 6999999999987753 47889999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 032319 106 FVDPAKSRE 114 (143)
Q Consensus 106 ~v~~~~~~~ 114 (143)
+|.+++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998653
No 121
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=101.71 Aligned_cols=78 Identities=23% Similarity=0.352 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+.+|+.||.|..+.+.. +||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356778999999999999999999999999999998863 399999999999999999999999999999999
Q ss_pred eCCCCC
Q 032319 109 PAKSRE 114 (143)
Q Consensus 109 ~~~~~~ 114 (143)
++.+..
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 998653
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=104.35 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=66.6
Q ss_pred CeEEEcCCCCCC------CHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEE
Q 032319 34 PRLFVSGLSRLT------TDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW-VIF 106 (143)
Q Consensus 34 ~~v~v~~l~~~~------~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~-~l~ 106 (143)
++|||+|||..+ ++++|+.+|++||.|..+.+. +.+|.++|||||+|.+.++|.+|+..|++..+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999887 35789999999999999999999999999999998 876
Q ss_pred E
Q 032319 107 V 107 (143)
Q Consensus 107 v 107 (143)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 123
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-17 Score=101.55 Aligned_cols=79 Identities=25% Similarity=0.410 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.....+|||+|||..+++++|+.+|..||.|..| ..++.++. ||||+|.+.++|.+|+. |++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 44544454 99999999999999999 999999999999998
Q ss_pred CCCCC
Q 032319 110 AKSRE 114 (143)
Q Consensus 110 ~~~~~ 114 (143)
+..+.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 76544
No 124
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=6.9e-18 Score=105.16 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....++|||+|||..+++++|+.+|..||.|..+.+.. ++|||||+|.+.++|..|+..|++..+.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 44568999999999999999999999999999998863 478999999999999999999999999999999999
Q ss_pred CCC
Q 032319 110 AKS 112 (143)
Q Consensus 110 ~~~ 112 (143)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=1e-17 Score=106.76 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....++|||+|||..+++++|+.+|+.||.|..+.+..+ +.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999875 55689999999999999999999999999999999999
Q ss_pred CCCCC
Q 032319 110 AKSRE 114 (143)
Q Consensus 110 ~~~~~ 114 (143)
+.++.
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 98543
No 126
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.2e-17 Score=110.44 Aligned_cols=84 Identities=35% Similarity=0.521 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
.......+|||+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 44566789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeCC
Q 032319 108 DPAK 111 (143)
Q Consensus 108 ~~~~ 111 (143)
.+++
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9986
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=104.88 Aligned_cols=81 Identities=22% Similarity=0.326 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||..+++++|+.+|..||.|..+ ..++.++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999987665 2458899999999999999999999999999999999999
Q ss_pred eCCCCC
Q 032319 109 PAKSRE 114 (143)
Q Consensus 109 ~~~~~~ 114 (143)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997654
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=103.64 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||..+++++|+.+|..||.|. +.+..+ .++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345578999999999999999999999999986 555543 568899999999999999999999999999999999
Q ss_pred eCCCCC
Q 032319 109 PAKSRE 114 (143)
Q Consensus 109 ~~~~~~ 114 (143)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998653
No 129
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=4.7e-18 Score=105.06 Aligned_cols=82 Identities=21% Similarity=0.309 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLK----EAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~----~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
..+.++|||+|||..+++++|+ .+|++||.|..+.+.. ++.++|||||+|.+.++|..|+..|++..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998864 36788999999999999999999999999999999
Q ss_pred EEeeCCCCC
Q 032319 106 FVDPAKSRE 114 (143)
Q Consensus 106 ~v~~~~~~~ 114 (143)
+|.++.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998653
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=2.1e-17 Score=102.53 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=70.8
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 27 YNSTLTSPRLFVSGLSR-LTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~-~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
.......++|||+|||. .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566789999999998 99999999999999999999882 6799999999999999999999999999999
Q ss_pred EEeeCCCC
Q 032319 106 FVDPAKSR 113 (143)
Q Consensus 106 ~v~~~~~~ 113 (143)
+|.+++++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998754
No 131
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=8e-20 Score=116.84 Aligned_cols=87 Identities=29% Similarity=0.324 Sum_probs=80.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVY--------SKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD 101 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~ 101 (143)
..+..+|||+|||..+++++|+++|+.||.|.. +.+..++.++.++|||||+|.+.++|.+|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999988 889988888999999999999999999999999999999
Q ss_pred CeEEEEeeCCCCCCC
Q 032319 102 GWVIFVDPAKSREAR 116 (143)
Q Consensus 102 ~~~l~v~~~~~~~~~ 116 (143)
|+.|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999866543
No 132
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=6.1e-18 Score=107.44 Aligned_cols=79 Identities=23% Similarity=0.195 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....+|||+|||+.+++++|+++|+.|| .|..+.+.. +.++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44567999999999999999999999999 899988753 3468999999999999999999999999999999999
Q ss_pred eCCC
Q 032319 109 PAKS 112 (143)
Q Consensus 109 ~~~~ 112 (143)
.+..
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9863
No 133
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=1.8e-17 Score=116.19 Aligned_cols=83 Identities=28% Similarity=0.403 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
.+.++|||+|||..+++++|+++|++||.|.+|+|..++.+++++|||||+|.+.++|..|+..+++..+.|+.+++..+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 032319 111 KSR 113 (143)
Q Consensus 111 ~~~ 113 (143)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 134
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=108.54 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCC---eeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQ---LVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV 104 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~---i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~ 104 (143)
.......+|||+|||+.+++++|+++|..||. |..+.|..+.. |+++|||||+|.+.++|.+|+. +++..+.|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 44567889999999999999999999999987 89999999877 9999999999999999999999 8999999999
Q ss_pred EEEeeCCCC
Q 032319 105 IFVDPAKSR 113 (143)
Q Consensus 105 l~v~~~~~~ 113 (143)
|.|.++..+
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998754
No 135
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.5e-17 Score=99.54 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|+ .+++++|+++|..||.|..+.+. .++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4456789999995 89999999999999999999884 457899999999999999999999999999999999
Q ss_pred eCCCCCC
Q 032319 109 PAKSREA 115 (143)
Q Consensus 109 ~~~~~~~ 115 (143)
++.++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9986543
No 136
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6e-18 Score=107.47 Aligned_cols=81 Identities=15% Similarity=0.207 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEE
Q 032319 30 TLTSPRLFVSGLSRL-TTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNA--KYLDGWVIF 106 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~-~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~l~~~~l~ 106 (143)
..+..+|||+|||+. +++++|+.+|.+||.|..+.|.+ ++|||||+|.+.++|..|++.|++ ..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 556789999999998 99999999999999999999864 368999999999999999998864 569999999
Q ss_pred EeeCCCCCCC
Q 032319 107 VDPAKSREAR 116 (143)
Q Consensus 107 v~~~~~~~~~ 116 (143)
|.++..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999865543
No 137
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=1.7e-18 Score=108.09 Aligned_cols=83 Identities=29% Similarity=0.521 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....++|||+|||..+++++|+.+|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|+. ++..+.|+.|.|..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 89999999999999999999999 88899999999999
Q ss_pred CCCCCC
Q 032319 110 AKSREA 115 (143)
Q Consensus 110 ~~~~~~ 115 (143)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 876543
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=3.5e-17 Score=109.58 Aligned_cols=82 Identities=30% Similarity=0.490 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
+.++|||+|||..+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35799999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
+.
T Consensus 81 ~~ 82 (167)
T 1fxl_A 81 PS 82 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 139
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=105.59 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
...+|||+|||+.+++++|+++|..| .|..+.|+.++. |+++|||||+|.+.++|.+|+ .+++..|.++.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34799999999999999999999999 899999999875 999999999999999999999 589999999999998886
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 140
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.3e-18 Score=103.78 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 29 STLTSPRLFVSGLSR-LTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~-~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
...+.++|||+|||. .+++++|+.+|.+||.|..+.+. +|||||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 346678999999998 99999999999999999999883 579999999999999999999999999999999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
.++.+..
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9997654
No 141
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.4e-18 Score=102.62 Aligned_cols=75 Identities=27% Similarity=0.426 Sum_probs=70.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 35 RLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 35 ~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
+|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999995 889999999998764
No 142
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=4e-17 Score=109.62 Aligned_cols=83 Identities=27% Similarity=0.361 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
+.++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|..|+..+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCC
Q 032319 112 SRE 114 (143)
Q Consensus 112 ~~~ 114 (143)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 143
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-17 Score=113.67 Aligned_cols=83 Identities=31% Similarity=0.371 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....++|||+|||..+++++|+++|..||.|..|.|..+. ++.++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred CCCC
Q 032319 110 AKSR 113 (143)
Q Consensus 110 ~~~~ 113 (143)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8754
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=3.2e-17 Score=109.10 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=75.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
.......++|||+|||+.+++++|+.+|+.||.|..+.+..+ ++|||||+|.+.++|..|+..|++..+.|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344567799999999999999999999999999999999776 478999999999999999999999999999999
Q ss_pred EeeCCCC
Q 032319 107 VDPAKSR 113 (143)
Q Consensus 107 v~~~~~~ 113 (143)
|.++.++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9998754
No 145
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=8e-17 Score=110.72 Aligned_cols=89 Identities=24% Similarity=0.494 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||..+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 344568999999999999999999999999999999999988899999999999999999999986 7999999999999
Q ss_pred eCCCCCCCCC
Q 032319 109 PAKSREARPP 118 (143)
Q Consensus 109 ~~~~~~~~~~ 118 (143)
++.++.....
T Consensus 179 ~a~~k~~~~~ 188 (196)
T 1l3k_A 179 KALSKQEMAS 188 (196)
T ss_dssp ECC-------
T ss_pred ecCChhHhcc
Confidence 9987765433
No 146
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.1e-17 Score=105.64 Aligned_cols=78 Identities=18% Similarity=0.208 Sum_probs=71.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCce
Q 032319 34 PRLFVSGL----SRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTS----IEE----AERARE--GMNAKY 99 (143)
Q Consensus 34 ~~v~v~~l----~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 99 (143)
..|||+|| |+.+++.+|+++|+.||+|.++.+..++.||.++|||||+|.+ ..+ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 322 788888 789999
Q ss_pred eCCeEEEEeeCC
Q 032319 100 LDGWVIFVDPAK 111 (143)
Q Consensus 100 l~~~~l~v~~~~ 111 (143)
|.|+.|+|...+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999865
No 147
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=1.2e-16 Score=109.92 Aligned_cols=84 Identities=31% Similarity=0.533 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
....+|||+|||..+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCC
Q 032319 111 KSRE 114 (143)
Q Consensus 111 ~~~~ 114 (143)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=7.2e-17 Score=110.94 Aligned_cols=87 Identities=39% Similarity=0.580 Sum_probs=78.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
+......++|||+|||..+++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 34556778999999999999999999999999999999999988899999999999999999999986 88999999999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
|.++....
T Consensus 86 v~~~~~~~ 93 (196)
T 1l3k_A 86 PKRAVSRE 93 (196)
T ss_dssp EEECCC--
T ss_pred eecccCcc
Confidence 99987553
No 149
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=6e-18 Score=111.49 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||+.+++++|+++|.+|| +..+.|+.++. ++++|||||+|.+.++|++|+ .+++..+.++.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 456678999999999999999999999999 77999999876 999999999999999999999 689999999999999
Q ss_pred eCCCCCC
Q 032319 109 PAKSREA 115 (143)
Q Consensus 109 ~~~~~~~ 115 (143)
.+..+..
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9876543
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=7.4e-17 Score=106.49 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEE--------EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYS--------KVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL 100 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~--------~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l 100 (143)
...+..+|||+|||+.+++++|+.+|..||.|..+ .+. .++.++|||||+|.+.++|.+|+..||+..+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 35667899999999999999999999999988653 333 2488899999999999999999999999999
Q ss_pred CCeEEEEeeCCCCC
Q 032319 101 DGWVIFVDPAKSRE 114 (143)
Q Consensus 101 ~~~~l~v~~~~~~~ 114 (143)
.|+.|.|.++++..
T Consensus 118 ~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 118 FGKPMVVQFARSAR 131 (143)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999998654
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=100.18 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYS-KVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~-~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
....++|||+|||..+++++|+.+|..||.|..+ .+..++.++ .|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 477765443 39999999999999999999999999999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99865
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=1.3e-16 Score=97.08 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
...+|||+|||..+++++|+++|.+| .|..+.+. +++|||||+|.+.++|.+|++.|++..+.|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 89999884 468999999999999999999999999999999999986
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 153
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=103.04 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
..++|||+|||..+++++|+.+|.+||.|..+.|.. +++||||+|.+.++|..|+..||+..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998754 46799999999999999999999999999999999987
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 154
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=2e-16 Score=102.77 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGF-GFVSYTSIEEAERAREGMNAKYLDG--WVIF 106 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~l~~--~~l~ 106 (143)
......|||+||++.+++++|+++|++||.|.++.+... .+++ |||+|.+.++|..|++.|+|..+.+ +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 445568899999999999999999999999999988764 2567 9999999999999999999999988 9999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
|.+++.+.
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998764
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=1.8e-16 Score=106.91 Aligned_cols=81 Identities=32% Similarity=0.551 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
.....+|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|.+|+..|++..+.|++|.|.+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred C
Q 032319 110 A 110 (143)
Q Consensus 110 ~ 110 (143)
+
T Consensus 171 A 171 (172)
T 2g4b_A 171 A 171 (172)
T ss_dssp C
T ss_pred C
Confidence 6
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=6.1e-17 Score=103.35 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE-----E
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV-----I 105 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~-----l 105 (143)
....+|||+|||+.+++++|+++|.+||.|..+.|..+ |||||+|.+.++|++||+.||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999998654 79999999999999999999999999988 6
Q ss_pred EEeeCCCC
Q 032319 106 FVDPAKSR 113 (143)
Q Consensus 106 ~v~~~~~~ 113 (143)
+|....+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77766543
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=105.78 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCe----eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQL----VYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i----~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
....+|||+|||+.+++++|+++|..||.| ..+.|+.+ .+|+++|||||+|.+.++|.+|++. ++..+.++.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999875 68888888 4799999999999999999999996 99999999999
Q ss_pred EeeCCCC
Q 032319 107 VDPAKSR 113 (143)
Q Consensus 107 v~~~~~~ 113 (143)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9887644
No 158
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=4.3e-16 Score=100.62 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGF-GFVSYTSIEEAERAREGMNAKYLDG--WVIFV 107 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~l~~--~~l~v 107 (143)
.....|||+||++.+++++|+.+|++||.|.++.|... .|| |||+|.+.++|..|++.|+|..|.+ +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33346789999999999999999999999999988652 266 9999999999999999999999987 68999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
.+++++.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9998664
No 159
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=1e-16 Score=107.85 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG--WVIFV 107 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~--~~l~v 107 (143)
.....+|||+||++.+++++|+++|++||+|.++.+.... +++||||+|.+.++|+.|++.|+|..|.+ +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 4445679999999999999999999999999999986542 47899999999999999999999999966 99999
Q ss_pred eeCCCCC
Q 032319 108 DPAKSRE 114 (143)
Q Consensus 108 ~~~~~~~ 114 (143)
.+++++.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998764
No 160
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.2e-16 Score=99.80 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRAT---GRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
....++|||+|||+.+++++|+++|++||.|. +.+..+..+ |+++|||||+|.+.++|++|++.++ .+.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568999999999999999999999999999 778777666 7899999999999999999999883 35666666
Q ss_pred EeeCC
Q 032319 107 VDPAK 111 (143)
Q Consensus 107 v~~~~ 111 (143)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 55443
No 161
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=5.3e-17 Score=105.21 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCee--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLV--YSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~--~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
......+|||+|||+.+++++|+++|+.| .|. .+.|+.++. |+++|||||+|.+.++|++|+.. ++..|.|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34567899999999999999999999999 577 899999876 99999999999999999999995 77899999999
Q ss_pred EeeCCC
Q 032319 107 VDPAKS 112 (143)
Q Consensus 107 v~~~~~ 112 (143)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=2e-16 Score=110.79 Aligned_cols=80 Identities=36% Similarity=0.617 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
...+|||+|||..+++++|+++|+.||.|..++|+.+. +.++|||||+|.+.++|.+|++.||+..|.|++|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999885 5579999999999999999999999999999999999988
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 65
No 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=101.62 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=69.4
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-----CC
Q 032319 30 TLTSPRLFV--SGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL-----DG 102 (143)
Q Consensus 30 ~~~~~~v~v--~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l-----~~ 102 (143)
..++.+||| +||++.+++++|+++|++||.|..+.|.. .+|||||+|.+.++|++|++.||+..+ .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 446788999 77999999999999999999999988753 268999999999999999999999988 68
Q ss_pred eEEEEeeCCCC
Q 032319 103 WVIFVDPAKSR 113 (143)
Q Consensus 103 ~~l~v~~~~~~ 113 (143)
++|.|.++...
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 99999998743
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.5e-16 Score=104.57 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=73.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~ 113 (143)
++|||+|||..+++++|+++|+.||.|..+.+..++. ++++|||||+|.+.++|..|+..+++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999998864 778999999999999999999999999999999999998754
Q ss_pred C
Q 032319 114 E 114 (143)
Q Consensus 114 ~ 114 (143)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 165
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=96.67 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
...++|||+|||..+++++|+.+|+.||.|..+.+..+ ++|||||+|.+.++|++++.. ...+.+++|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45789999999999999999999999999999988754 578999999999999765331 33569999999998
Q ss_pred CCCCCC
Q 032319 111 KSREAR 116 (143)
Q Consensus 111 ~~~~~~ 116 (143)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 866543
No 166
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=3.6e-16 Score=95.44 Aligned_cols=78 Identities=18% Similarity=0.365 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce--eCCeEE
Q 032319 28 NSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKY--LDGWVI 105 (143)
Q Consensus 28 ~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--l~~~~l 105 (143)
....+..+|||+|||+.+++++|+++|++||.|.++.|..+ ++|||||+|.+.++|.+ +++.. +.++.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34667899999999999999999999999999999998764 68999999999999884 44554 569999
Q ss_pred EEeeCCCCC
Q 032319 106 FVDPAKSRE 114 (143)
Q Consensus 106 ~v~~~~~~~ 114 (143)
.|..+.++.
T Consensus 77 ~v~~a~~k~ 85 (89)
T 3d2w_A 77 HISNAEPKH 85 (89)
T ss_dssp EEEECC---
T ss_pred EEEEcCCCC
Confidence 999988654
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=9.1e-17 Score=107.84 Aligned_cols=81 Identities=26% Similarity=0.535 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
...+|||+|||..+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 45689999999999999999999999999999999998889999999999999999999998 89999999999999997
Q ss_pred CC
Q 032319 112 SR 113 (143)
Q Consensus 112 ~~ 113 (143)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.5e-16 Score=94.08 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=65.4
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 32 TSPR-LFVSGLSRLTTDEK----LKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 32 ~~~~-v~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
+..+ |||+|||+.+++++ |+++|+.|| +|.++ ++ |+|||.|.+.++|.+|++.|++..+.|++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3445 99999999999987 558999994 99887 23 899999999999999999999999999999
Q ss_pred EEeeCCCCCC
Q 032319 106 FVDPAKSREA 115 (143)
Q Consensus 106 ~v~~~~~~~~ 115 (143)
+|.+++....
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987654
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=6e-16 Score=103.79 Aligned_cols=81 Identities=32% Similarity=0.578 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG--WVIFV 107 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~--~~l~v 107 (143)
.....+|||+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..+.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4567899999999999999999999999999999999998789999999999999999999999999999977 99999
Q ss_pred eeC
Q 032319 108 DPA 110 (143)
Q Consensus 108 ~~~ 110 (143)
.++
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=2.6e-16 Score=109.65 Aligned_cols=83 Identities=31% Similarity=0.440 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
...++|||+|||..+++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999876
Q ss_pred CCC
Q 032319 111 KSR 113 (143)
Q Consensus 111 ~~~ 113 (143)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=4.6e-16 Score=108.64 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=71.3
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 32 TSPRLFVSGLS-RLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 32 ~~~~v~v~~l~-~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
+.++|||+||| ..+++++|+++|++||.|.+++++.+ ++|||||+|.+.++|..|++.||+..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999765 3689999999999999999999999999999999998
Q ss_pred CCC
Q 032319 111 KSR 113 (143)
Q Consensus 111 ~~~ 113 (143)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=3.8e-16 Score=94.51 Aligned_cols=73 Identities=21% Similarity=0.391 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPF----G-------QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAK 98 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 98 (143)
..+.++|||+|||..+++++|+++|..| | .|..+.+..+ +|||||+|.+.++|.+|+ .|++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3456899999999999999999999999 8 8999888654 689999999999999999 89999
Q ss_pred eeCCeEEEEee
Q 032319 99 YLDGWVIFVDP 109 (143)
Q Consensus 99 ~l~~~~l~v~~ 109 (143)
.+.|+.|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999974
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=1.1e-15 Score=98.38 Aligned_cols=78 Identities=24% Similarity=0.405 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|+ .+++++|+.+|+.||.|..+.+. .++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4466789999995 69999999999999999999885 357899999999999999999999999999999999
Q ss_pred eCCCCC
Q 032319 109 PAKSRE 114 (143)
Q Consensus 109 ~~~~~~ 114 (143)
++.++.
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998654
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=1e-15 Score=102.33 Aligned_cols=81 Identities=33% Similarity=0.620 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE--EEE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV--IFV 107 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~--l~v 107 (143)
.....+|||+|||..+++++|+++|+.||.|..+.+..+..+|.++|+|||+|.+.++|.+|++.|++..+.|+. |.|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345689999999999999999999999999999999999888999999999999999999999999999999964 777
Q ss_pred eeC
Q 032319 108 DPA 110 (143)
Q Consensus 108 ~~~ 110 (143)
.++
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=1.1e-15 Score=103.13 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATG--RSKGFGFVSYTSIEEAERAREGMNAKYLD---GWVIF 106 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~l~---~~~l~ 106 (143)
..++|||+|||..+++++|+++|.+||.|..+.+..+..++ .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998776 89999999999999999999999998765 57777
Q ss_pred EeeCCCC
Q 032319 107 VDPAKSR 113 (143)
Q Consensus 107 v~~~~~~ 113 (143)
+..+...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 7776644
No 176
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=1.2e-15 Score=103.21 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
......+|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34566899999999999999999999999987655 4568899999999999999999999999999999999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
++.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99754
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=2.4e-15 Score=109.04 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLK----EAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV 104 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~----~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~ 104 (143)
+..+.++|||+|||..+++++|+ ++|..||.|..|++.. +++++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45668899999999999999977 8999999999998876 4788999999999999999999999999999999
Q ss_pred EEEeeCCCCC
Q 032319 105 IFVDPAKSRE 114 (143)
Q Consensus 105 l~v~~~~~~~ 114 (143)
|+|.++....
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999987544
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=2.5e-15 Score=101.26 Aligned_cols=81 Identities=23% Similarity=0.408 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---CeEE
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD---GWVI 105 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~---~~~l 105 (143)
......+|||+|||..+++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|.+|+..||+..+. +++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34467899999999999999999999999999999999985 5889999999999999999999999998765 4899
Q ss_pred EEeeC
Q 032319 106 FVDPA 110 (143)
Q Consensus 106 ~v~~~ 110 (143)
.|.++
T Consensus 170 ~V~~a 174 (175)
T 3nmr_A 170 VVKFA 174 (175)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99886
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=1e-15 Score=102.70 Aligned_cols=79 Identities=35% Similarity=0.582 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
+.++|||+|||..+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|..|+.. ++.+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 457999999999999999999999999999999999988899999999999999999999994 578999999888776
Q ss_pred C
Q 032319 112 S 112 (143)
Q Consensus 112 ~ 112 (143)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=6.6e-15 Score=92.49 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHhhcCCCCeeEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 032319 31 LTSPRLFVSGLSR-----LTTDEKLKEAFAPFGQLVYSKVITDRAT-GRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV 104 (143)
Q Consensus 31 ~~~~~v~v~~l~~-----~~~~~~l~~~f~~~g~i~~~~l~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~ 104 (143)
.++++|+|.|+.. .-.+++|+++|++||.|.++.|..++.+ +.++|++||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4577899999963 2367899999999999999999987643 678999999999999999999999999999999
Q ss_pred EEEeeCCC
Q 032319 105 IFVDPAKS 112 (143)
Q Consensus 105 l~v~~~~~ 112 (143)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999874
No 181
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=5.5e-15 Score=102.29 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCC
Q 032319 33 SPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKS 112 (143)
Q Consensus 33 ~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~ 112 (143)
.++|||+|||..+++++|+.+|++||.|..+.|..+. ++.++|||||+|.+.++|..|+..+ +..+.|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999886 4889999999999999999999864 5699999999998764
Q ss_pred C
Q 032319 113 R 113 (143)
Q Consensus 113 ~ 113 (143)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.61 E-value=2.8e-15 Score=109.19 Aligned_cols=84 Identities=24% Similarity=0.346 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 29 STLTSPRLFVSGLSRL-TTDEKLKEAFAPFGQLVYSKVITDRA-TGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~-~~~~~l~~~f~~~g~i~~~~l~~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
......+|||+|||.. +++++|+++|+.||.|..+.+..+.. ||.++|||||+|.+.++|.+|+ .|++..+.|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999988765 5889999999999999999999 9999999999999
Q ss_pred EeeCCCC
Q 032319 107 VDPAKSR 113 (143)
Q Consensus 107 v~~~~~~ 113 (143)
|.++.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999865
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=8.7e-15 Score=106.18 Aligned_cols=86 Identities=22% Similarity=0.260 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 29 STLTSPRLFVSGLSRLT-TDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~-~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
......+|||+|||..+ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44667899999999995 999999999999999999999886 6899999999999999999999999999999999999
Q ss_pred eeCCCCCC
Q 032319 108 DPAKSREA 115 (143)
Q Consensus 108 ~~~~~~~~ 115 (143)
.++.++..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99986543
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=1.1e-14 Score=105.58 Aligned_cols=84 Identities=29% Similarity=0.452 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
....+|||+|||..+++++|+++|..||.|..+.+..+..+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35579999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCCC
Q 032319 111 KSRE 114 (143)
Q Consensus 111 ~~~~ 114 (143)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7654
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=3.1e-15 Score=106.46 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCC---------CHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 032319 29 STLTSPRLFVSGLSRLT---------TDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKY 99 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~---------~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 99 (143)
......+|||+||+..+ ++++|+.+|++||.|..+.|+.. +|||||+|.+.++|+.|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35677899999999998 79999999999999999998753 7899999999999999999999999
Q ss_pred e------------CCeEEEEeeCCCC
Q 032319 100 L------------DGWVIFVDPAKSR 113 (143)
Q Consensus 100 l------------~~~~l~v~~~~~~ 113 (143)
| .|+.|.|.++...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred EeccccccccccCCCCEEEEEEccCC
Confidence 9 8999999999854
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.6e-14 Score=89.06 Aligned_cols=82 Identities=18% Similarity=0.277 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 032319 29 STLTSPRLFVSGLSRLTT-----------DEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNA 97 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~-----------~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 97 (143)
...++++|+|.||..... +++|+++|++||.|..+.| .+. .++|||||+|.+.++|.+|+..||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456788999999955433 5789999999999999966 442 3789999999999999999999999
Q ss_pred ceeCCeEEEEeeCCCCC
Q 032319 98 KYLDGWVIFVDPAKSRE 114 (143)
Q Consensus 98 ~~l~~~~l~v~~~~~~~ 114 (143)
..+.|+.|.|.++.++.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999987654
No 187
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=6.7e-15 Score=104.07 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 032319 29 STLTSPRLFVSGLSR-LTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFV 107 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~-~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v 107 (143)
.....++|||+|||. .+++++|+++|+.||.|..+.+..+. +|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998864 679999999999999999999999999999999
Q ss_pred eeCCCC
Q 032319 108 DPAKSR 113 (143)
Q Consensus 108 ~~~~~~ 113 (143)
.++...
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 998754
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=2e-14 Score=104.15 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEe
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD-GWVIFVD 108 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~-~~~l~v~ 108 (143)
.....+|||+|||..+++++|+++|+.||.|..+++..++ +|||||+|.+.++|.+|+..|++..+. |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4456889999999999999999999999999999998653 579999999999999999999999999 9999999
Q ss_pred eCC
Q 032319 109 PAK 111 (143)
Q Consensus 109 ~~~ 111 (143)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=100.33 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeC
Q 032319 32 TSPRLFVSGLSR-LTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPA 110 (143)
Q Consensus 32 ~~~~v~v~~l~~-~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~ 110 (143)
..++|||+|||. .+++++|+++|+.||.|..+.+..+. +|||||+|.+.++|..|+..|++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 457999999999 99999999999999999999988764 679999999999999999999999999999999998
Q ss_pred CCC
Q 032319 111 KSR 113 (143)
Q Consensus 111 ~~~ 113 (143)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=2.9e-14 Score=102.66 Aligned_cols=78 Identities=26% Similarity=0.355 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+.+|+.||.|..+.+.. ++|||||+|.+.++|..|+..+++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345667999999999999999999999999999998854 36899999999999999999999999999999999
Q ss_pred eCCC
Q 032319 109 PAKS 112 (143)
Q Consensus 109 ~~~~ 112 (143)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=2.2e-15 Score=101.92 Aligned_cols=84 Identities=26% Similarity=0.347 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEe
Q 032319 29 STLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVD 108 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~ 108 (143)
.....++|||+|||..+++++|+++|..||.+..+ ++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 45677899999999999999999999999866542 23333457889999999999999999995 99999999999999
Q ss_pred eCCCCC
Q 032319 109 PAKSRE 114 (143)
Q Consensus 109 ~~~~~~ 114 (143)
++..+.
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 987643
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=5e-14 Score=99.55 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEe
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD-GWVIFVD 108 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~-~~~l~v~ 108 (143)
.+..+|||+|||..+++++|+++|..|| .|..+.+... .+|+|||+|.+.++|.+|+..|++..+. |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4468999999999999999999999999 9999988653 3679999999999999999999999999 9999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
+++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99754
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=2.9e-14 Score=98.27 Aligned_cols=78 Identities=23% Similarity=0.254 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEe
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD-GWVIFVD 108 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~-~~~l~v~ 108 (143)
.+..+|||+|||..+++++|+++|..|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|++..+. |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999998664 2689999999999999999999999999 9999999
Q ss_pred eCCCC
Q 032319 109 PAKSR 113 (143)
Q Consensus 109 ~~~~~ 113 (143)
+++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98754
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=7.9e-14 Score=100.35 Aligned_cols=83 Identities=29% Similarity=0.470 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-ceeC---CeEEE
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNA-KYLD---GWVIF 106 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~l~---~~~l~ 106 (143)
.+..+|||+|||..+++++|+.+|..||.|..+.+..+ .+|.++|||||+|.+.++|.+|+..|++ ..+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 34679999999999999999999999999999999999 5799999999999999999999999954 4444 89999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
|.++....
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99987653
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.52 E-value=1.6e-13 Score=94.25 Aligned_cols=76 Identities=18% Similarity=0.399 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPF----G-------QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL 100 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l 100 (143)
..++|||+|||..+++++|+++|..| | .|..+.+ +.++|||||+|.+.++|.+|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5555555 445789999999999999999 7999999
Q ss_pred CCeEEEEeeCCCCC
Q 032319 101 DGWVIFVDPAKSRE 114 (143)
Q Consensus 101 ~~~~l~v~~~~~~~ 114 (143)
.|+.|.|.++....
T Consensus 76 ~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQ 89 (198)
T ss_dssp TTEEEEEECCCCCC
T ss_pred cCceEEEeCCCCCC
Confidence 99999999887653
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=4.4e-14 Score=102.85 Aligned_cols=84 Identities=18% Similarity=0.309 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEee
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFG-QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDP 109 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g-~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~ 109 (143)
....+|||+|||..+++++|+++|..|| .|..+.+..+.. +.++|||||+|.+.++|..|+..|++..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3678999999999999999999999999 999999988765 78899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 032319 110 AKSREA 115 (143)
Q Consensus 110 ~~~~~~ 115 (143)
+.+...
T Consensus 194 a~~~~~ 199 (292)
T 2ghp_A 194 SNPLEK 199 (292)
T ss_dssp CCCC--
T ss_pred CCCCcc
Confidence 886543
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.51 E-value=6.8e-14 Score=94.11 Aligned_cols=75 Identities=19% Similarity=0.392 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPF----G-------QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYL 100 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l 100 (143)
+.++|||+|||..+++++|+++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 6 66666663 34789999999999999999 7999999
Q ss_pred CCeEEEEeeCCCC
Q 032319 101 DGWVIFVDPAKSR 113 (143)
Q Consensus 101 ~~~~l~v~~~~~~ 113 (143)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987643
No 198
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.51 E-value=3.2e-14 Score=99.28 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCe--eEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQL--VYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i--~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
.+..+|||+|||+.+++++|+++|++||.| ..+++..+. +.++|+|||+|.+.++|.+|+..||+..+.+.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 346789999999999999999999999998 889888764 55669999999999999999999999998886
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=1.3e-13 Score=86.51 Aligned_cols=81 Identities=14% Similarity=0.216 Sum_probs=68.7
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHhhcCCCCeeEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCce
Q 032319 32 TSPRLFVSGL--SRLTT--------DEKLKEAFAPFGQLVYSKVITDRAT--GRSKGFGFVSYTSIEEAERAREGMNAKY 99 (143)
Q Consensus 32 ~~~~v~v~~l--~~~~~--------~~~l~~~f~~~g~i~~~~l~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~ 99 (143)
+++.|.+.|+ |..+. +++|++.|++||.|.++.|.++..+ +.++|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678888887 32332 3589999999999999999887654 3578999999999999999999999999
Q ss_pred eCCeEEEEeeCCC
Q 032319 100 LDGWVIFVDPAKS 112 (143)
Q Consensus 100 l~~~~l~v~~~~~ 112 (143)
+.|+.|.|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998753
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=2.1e-14 Score=90.01 Aligned_cols=72 Identities=21% Similarity=0.394 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHhh------------cCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 38 VSGLSRLTTDEKLKEAF------------APFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 38 v~~l~~~~~~~~l~~~f------------~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
+.+|+..+++++|++.| ++||.|..+.|..+.. +.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777666665 9999999999998754 7889999999999999999999999999999999
Q ss_pred EEeeC
Q 032319 106 FVDPA 110 (143)
Q Consensus 106 ~v~~~ 110 (143)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=4.2e-13 Score=85.87 Aligned_cols=80 Identities=13% Similarity=0.241 Sum_probs=69.1
Q ss_pred CCCeEEEcCCCCC--C---CHHHHHHhhcCCCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 032319 32 TSPRLFVSGLSRL--T---TDEKLKEAFAPFGQLVYSKVITDRA----TGRSKGFGFVSYTSIEEAERAREGMNAKYLDG 102 (143)
Q Consensus 32 ~~~~v~v~~l~~~--~---~~~~l~~~f~~~g~i~~~~l~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~ 102 (143)
+++.|++.|+-.. + -+++|++.|++||.|.++.|..+.. ++.++|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5778888888432 1 3578999999999999999998754 35678999999999999999999999999999
Q ss_pred eEEEEeeCC
Q 032319 103 WVIFVDPAK 111 (143)
Q Consensus 103 ~~l~v~~~~ 111 (143)
+.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=6.9e-13 Score=98.91 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=65.9
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC---Ce
Q 032319 29 STLTSPRLFVSG--LSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD---GW 103 (143)
Q Consensus 29 ~~~~~~~v~v~~--l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~---~~ 103 (143)
...++.+|||+| |++.+++++|+++|++||+|..+.+.. ++|||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 467788999999 578899999999999999999887743 4689999999999999999999999762 34
Q ss_pred --EEEEeeCC
Q 032319 104 --VIFVDPAK 111 (143)
Q Consensus 104 --~l~v~~~~ 111 (143)
.+.+.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57788874
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.2e-12 Score=77.35 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=56.2
Q ss_pred CCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCCCCC
Q 032319 43 RLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAKSRE 114 (143)
Q Consensus 43 ~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~~~~ 114 (143)
..+++++|+.+|++||.|..+.|. +.++|||||+|.+.++|..|+..++ .+.+++|+|.+++.+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCC
Confidence 458999999999999999999887 3578999999999999999999744 4679999999987543
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=1.6e-11 Score=78.06 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCCCCCC----------HHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 032319 30 TLTSPRLFVSGLSRLTT----------DEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKY 99 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~----------~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 99 (143)
..+++.|.+.|+-..-. +++|++.|++||.|.++.+..+. .+|++||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34566787877655332 24789999999999999886653 48999999999999999999999999
Q ss_pred eCCeEEEEeeCCC
Q 032319 100 LDGWVIFVDPAKS 112 (143)
Q Consensus 100 l~~~~l~v~~~~~ 112 (143)
+.|+.|.|.+...
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999864
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3e-10 Score=72.61 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=67.5
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CceeCCeE
Q 032319 29 STLTSPRLFVSGLSRL-TTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTS-IEEAERAREGMN--AKYLDGWV 104 (143)
Q Consensus 29 ~~~~~~~v~v~~l~~~-~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--~~~l~~~~ 104 (143)
.-.....|||+||+.. +++++|+.+|+.||+|..|.+..+.. .|||.|.+ ..+|..|++.++ +..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3467789999999999 99999999999999999999988754 69999999 899999999984 55788888
Q ss_pred EEEeeCCC
Q 032319 105 IFVDPAKS 112 (143)
Q Consensus 105 l~v~~~~~ 112 (143)
+.++....
T Consensus 88 ~~~evL~G 95 (121)
T 1owx_A 88 VTWEVLEG 95 (121)
T ss_dssp EEEEECCH
T ss_pred EEEEECCC
Confidence 88876543
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=7.7e-10 Score=66.86 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=60.0
Q ss_pred CCCeEEEcCCCC----C-CCH---HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 032319 32 TSPRLFVSGLSR----L-TTD---EKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGW 103 (143)
Q Consensus 32 ~~~~v~v~~l~~----~-~~~---~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~ 103 (143)
+..+|+|.-.+. . ..+ .+|...|.+||.|..+++..++ +||+|.+.++|.+|+. |++..+.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 445677766552 2 332 4689999999999999998863 8999999999999999 999999999
Q ss_pred EEEEeeCCCC
Q 032319 104 VIFVDPAKSR 113 (143)
Q Consensus 104 ~l~v~~~~~~ 113 (143)
.|+|..+.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998753
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=3.4e-09 Score=74.26 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=59.2
Q ss_pred CHHHHHHhhcCCCCeeEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 46 TDEKLKEAFAPFGQLVYSKVITDRA----TGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 46 ~~~~l~~~f~~~g~i~~~~l~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
.+++|+..|++||.|..+.+..+.. ++.++|++||+|.+.++|.+|+..|+|..+.|+.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4568999999999999999985543 45889999999999999999999999999999999999875
No 208
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.84 E-value=3.1e-08 Score=61.54 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCC-----CCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPF-----GQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVI 105 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~-----g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l 105 (143)
...++|-+-+||+.++...|+.++..+ |.+..+.+..+. +.|+|+|.+...|.+|...|+|..+.|++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 446788899999999999999999999 999999888874 589999999999999999999999999999
Q ss_pred EEeeC
Q 032319 106 FVDPA 110 (143)
Q Consensus 106 ~v~~~ 110 (143)
++...
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98754
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=3.3e-09 Score=64.42 Aligned_cols=72 Identities=11% Similarity=0.219 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCCCC------CCH---HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 032319 31 LTSPRLFVSGLSRL------TTD---EKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLD 101 (143)
Q Consensus 31 ~~~~~v~v~~l~~~------~~~---~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~ 101 (143)
.+..+|+|.-++.. ..+ .+|.+.|..||.+..+++..++ +||+|.+.++|.+||. |++..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45568888777632 332 4589999999999999998873 9999999999999999 9999999
Q ss_pred CeEEEEeeCC
Q 032319 102 GWVIFVDPAK 111 (143)
Q Consensus 102 ~~~l~v~~~~ 111 (143)
|+.|+|....
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999764
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=0.00011 Score=45.05 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=61.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcC-----CCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAP-----FGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWV 104 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~-----~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~ 104 (143)
.....+|.|.|||..+.++.|.-+|+. -|.|..+.... +-|+|+|.+...|++.+.. ..+.|.+..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 345679999999999999999999985 24777776533 3799999999999999884 478999999
Q ss_pred EEEeeCCCC
Q 032319 105 IFVDPAKSR 113 (143)
Q Consensus 105 l~v~~~~~~ 113 (143)
|.|....+.
T Consensus 76 LsV~P~~~~ 84 (104)
T 2dhx_A 76 LSLRPAPPR 84 (104)
T ss_dssp CEEEECCCC
T ss_pred EEEEcCCCC
Confidence 999875544
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=0.00011 Score=45.32 Aligned_cols=77 Identities=12% Similarity=0.045 Sum_probs=63.1
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 032319 32 TSPRLFVSGLSRLT-TD----EKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIF 106 (143)
Q Consensus 32 ~~~~v~v~~l~~~~-~~----~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~ 106 (143)
-+.+++|.||+..+ .. +.++.+|..|+++.....+..- .-..|.|.+.++|.+|-..||+..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35689999998864 22 4678999999988887665542 2568999999999999999999999999999
Q ss_pred EeeCCCCC
Q 032319 107 VDPAKSRE 114 (143)
Q Consensus 107 v~~~~~~~ 114 (143)
|-++.+..
T Consensus 78 ~YFgq~~~ 85 (104)
T 1wey_A 78 LYFAQTLH 85 (104)
T ss_dssp EECCCCSS
T ss_pred EEecCCCC
Confidence 99998543
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.68 E-value=0.00029 Score=42.79 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=47.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 032319 30 TLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMN 96 (143)
Q Consensus 30 ~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 96 (143)
......+++ .+|..+...+|.++|+.|| ...|+++-+. -|||.|.+.+.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 455566777 9999999999999999998 5556666653 79999999999999998663
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.51 E-value=0.0011 Score=39.88 Aligned_cols=69 Identities=13% Similarity=0.237 Sum_probs=56.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCC--cccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGR--SKGFGFVSYTSIEEAERAREGMNAKYLDG 102 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~l~~ 102 (143)
.+|.|++||+.++++++.+.++...++.....+..+.+.+ .-+-|+|.|.+.+++..-.+.++|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4788999999999999999999988776666666554322 34578999999999999999999997544
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.43 E-value=0.00073 Score=42.62 Aligned_cols=77 Identities=17% Similarity=0.265 Sum_probs=58.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-eEE
Q 032319 27 YNSTLTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDG-WVI 105 (143)
Q Consensus 27 ~~~~~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~-~~l 105 (143)
........-|.|-++|... ...|..+|.+||.|.+.... ....|-.|.|.+..+|++||.. |+..+.+ .-|
T Consensus 18 ~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mI 89 (119)
T 1wwh_A 18 SEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMI 89 (119)
T ss_dssp ---CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEEC
T ss_pred CCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEE
Confidence 3445567788888999875 56688899999999887651 1245999999999999999995 9998874 667
Q ss_pred EEeeCC
Q 032319 106 FVDPAK 111 (143)
Q Consensus 106 ~v~~~~ 111 (143)
-|....
T Consensus 90 GV~p~~ 95 (119)
T 1wwh_A 90 GVKPCI 95 (119)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776653
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.21 E-value=0.00076 Score=41.06 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMN 96 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 96 (143)
..++| ++|..+...+|..+|+.|| ...|.++-+. .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 5566666653 79999999999999998764
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.54 E-value=0.019 Score=34.76 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=51.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 032319 31 LTSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATG--RSKGFGFVSYTSIEEAERAREGMNAKYLDG 102 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~l~~ 102 (143)
-..-+|.|+.||+.++++++.+.++.+-++.....+..+.+. ..-.-|+|.|.+.++...-.+..+|+.+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 345689999999999999988888765444332222222221 123468999999999999999999996544
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.75 E-value=0.016 Score=37.71 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=28.6
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 032319 62 YSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKY 99 (143)
Q Consensus 62 ~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 99 (143)
.++|..+. ++++||+||+|.+.++|++|+..+++..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 34566664 4689999999999999999998877543
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.71 E-value=0.0064 Score=46.97 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=40.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERARE 93 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~ 93 (143)
++|+|. +|..+++.+|.++|++||.|..+.+-.+. ..|++|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 789997 79999999999999999999988765442 3699999999998887755
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.69 E-value=0.016 Score=37.05 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=54.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEee------------cCCCC-CcccEEEEEeCCHHHHHHHHHHhCCce
Q 032319 34 PRLFVSGLSRLTTDEKLKEAFAPFGQLVY-SKVIT------------DRATG-RSKGFGFVSYTSIEEAERAREGMNAKY 99 (143)
Q Consensus 34 ~~v~v~~l~~~~~~~~l~~~f~~~g~i~~-~~l~~------------~~~~~-~~~g~afv~f~~~~~a~~a~~~l~~~~ 99 (143)
..|.|-+.|.... ..+-..|++||.|.+ ..... .+... ....|-.|+|.+..+|.+|+.. ||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 4566778877654 557789999998865 21111 00000 1356999999999999999995 9999
Q ss_pred eCCeEEEEeeCC
Q 032319 100 LDGWVIFVDPAK 111 (143)
Q Consensus 100 l~~~~l~v~~~~ 111 (143)
+.|.-|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999888887765
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.16 E-value=0.06 Score=34.66 Aligned_cols=41 Identities=22% Similarity=0.126 Sum_probs=36.5
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEeeCCCC
Q 032319 72 GRSKGFGFVSYTSIEEAERAREGM-NAKYLDGWVIFVDPAKSR 113 (143)
Q Consensus 72 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~l~~~~l~v~~~~~~ 113 (143)
...+|+++++|.+.++|++|++.+ ++..+.| .+.+..+..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 467899999999999999999999 9999999 9999987653
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.22 E-value=1.1 Score=35.03 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=44.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 032319 32 TSPRLFVSGLSRLTTDEKLKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNA 97 (143)
Q Consensus 32 ~~~~v~v~~l~~~~~~~~l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 97 (143)
+...++++ +|..+...+|.++|+.||. ..+.++.+ ..|||.|.+.+.|..++..+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 34455555 8889999999999999994 44544443 2799999999999999998754
No 222
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=59.79 E-value=35 Score=22.61 Aligned_cols=62 Identities=10% Similarity=0.127 Sum_probs=40.0
Q ss_pred CCeEEEcCCCC---------CCCHHHHHHhh--cCCCCeeEEEEeecCCCCCcccEEEEEeC-CHHHHHHHHHHhCCc
Q 032319 33 SPRLFVSGLSR---------LTTDEKLKEAF--APFGQLVYSKVITDRATGRSKGFGFVSYT-SIEEAERAREGMNAK 98 (143)
Q Consensus 33 ~~~v~v~~l~~---------~~~~~~l~~~f--~~~g~i~~~~l~~~~~~~~~~g~afv~f~-~~~~a~~a~~~l~~~ 98 (143)
+.++.|.|+|. ..+...|++.| ..|..+. +..+... ..+.|+++|.|. +..-...|+. |+.+
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~-fek~ 85 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL-FDKA 85 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH-HHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH-HHHH
Confidence 35667777776 13446788877 8887543 5555553 447899999997 5555555654 3433
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=51.63 E-value=13 Score=20.56 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCHHHHHHhhcC-CC----CeeEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEeeCC
Q 032319 45 TTDEKLKEAFAP-FG----QLVYSKVITDRATGRSKGFGFVSYTSIEEAERAREGMNAKYLDGWVIFVDPAK 111 (143)
Q Consensus 45 ~~~~~l~~~f~~-~g----~i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~l~~~~l~v~~~~ 111 (143)
+...+|..++.. .| .|-.+.+... |+||+... ..+..++..|++..+.|+.+.++.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 444555555553 33 3455665333 78888864 55778888899999999999888764
No 224
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=47.11 E-value=44 Score=20.00 Aligned_cols=48 Identities=17% Similarity=0.397 Sum_probs=29.7
Q ss_pred CCCCHHHHHHhhcC-CC---C-eeEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 032319 43 RLTTDEKLKEAFAP-FG---Q-LVYSKVITDRATGRSKGFGFVSYTSIEEAERA 91 (143)
Q Consensus 43 ~~~~~~~l~~~f~~-~g---~-i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~a 91 (143)
...+..+|++-+.+ |+ + |.-..+.+....|++.|||.| |.+.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 34567777776664 44 2 233356666666778888877 6776665543
No 225
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=30.93 E-value=1e+02 Score=19.49 Aligned_cols=46 Identities=30% Similarity=0.534 Sum_probs=30.7
Q ss_pred CCCHHHHHHhhcC-CC---C-eeEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 032319 44 LTTDEKLKEAFAP-FG---Q-LVYSKVITDRATGRSKGFGFVSYTSIEEAER 90 (143)
Q Consensus 44 ~~~~~~l~~~f~~-~g---~-i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~ 90 (143)
..+..+|++-+.. |+ + |.-..+......|.+.|||.| |.+.+.+..
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 4677888888865 55 2 222355566666778888888 777777654
No 226
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=30.07 E-value=94 Score=18.77 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=29.4
Q ss_pred CCCHHHHHHhhcC-CC---C-eeEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 032319 44 LTTDEKLKEAFAP-FG---Q-LVYSKVITDRATGRSKGFGFVSYTSIEEAER 90 (143)
Q Consensus 44 ~~~~~~l~~~f~~-~g---~-i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~ 90 (143)
..+..+|++-+.. |+ + |.-..+.+..+.|++.|||.| |.+.+.|..
T Consensus 38 tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 38 TPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4567777766654 44 2 223355566666788889987 777777654
No 227
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=29.33 E-value=95 Score=18.58 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCCHHHHHHhhcC-CC---C-eeEEEEeecCCCCCcccEEEEEeCCHHHHHH
Q 032319 44 LTTDEKLKEAFAP-FG---Q-LVYSKVITDRATGRSKGFGFVSYTSIEEAER 90 (143)
Q Consensus 44 ~~~~~~l~~~f~~-~g---~-i~~~~l~~~~~~~~~~g~afv~f~~~~~a~~ 90 (143)
..+..+|++-+.+ |+ + |.-..+......|++.|||.| |.+.+.|.+
T Consensus 29 tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 29 TPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4566777766664 33 2 333356666666788888877 777776654
No 228
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=27.30 E-value=1.4e+02 Score=19.79 Aligned_cols=52 Identities=4% Similarity=-0.215 Sum_probs=36.4
Q ss_pred CCCCeEEEcCCCCCCCHHH--------HHHhhcCCCCeeEEEEeecCCCCCcccEEEEEeCCH
Q 032319 31 LTSPRLFVSGLSRLTTDEK--------LKEAFAPFGQLVYSKVITDRATGRSKGFGFVSYTSI 85 (143)
Q Consensus 31 ~~~~~v~v~~l~~~~~~~~--------l~~~f~~~g~i~~~~l~~~~~~~~~~g~afv~f~~~ 85 (143)
.+..+=++-.||..++.++ +++.|..+|.+..+-|..+. .....+.|.+...
T Consensus 68 a~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~---~~NpHaHim~t~R 127 (185)
T 2ns6_A 68 GRLFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGG---GENPHCHLMISER 127 (185)
T ss_dssp SCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEET---TTEEEEEEEECCB
T ss_pred CeEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCC---CCCceEEEEEeec
Confidence 3344556668999998864 45667778888888888752 2456888888653
Done!