Query 032322
Match_columns 143
No_of_seqs 94 out of 96
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 20:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p2u_A HOST-nuclease inhibitor 36.2 98 0.0034 23.3 6.3 41 93-133 39-79 (171)
2 3sjd_D Golgi to ER traffic pro 24.0 93 0.0032 20.0 3.6 37 79-125 10-46 (46)
3 3e21_A HFAF1, FAS-associated f 7.8 1.4E+02 0.0047 18.4 1.0 13 80-92 1-13 (45)
4 2xzr_A Immunoglobulin-binding 7.5 7E+02 0.024 18.3 4.9 26 80-105 30-59 (114)
5 2zuo_A MVP, major vault protei 7.1 1.1E+03 0.037 22.8 7.1 64 78-141 684-754 (861)
6 3myu_A High affinity transport 6.9 2.2E+02 0.0074 24.6 2.1 14 93-106 162-175 (344)
7 2p2u_A HOST-nuclease inhibitor 6.9 7.1E+02 0.024 18.4 4.8 48 84-141 18-65 (171)
8 2kw3_C Regulatory factor X-ass 6.5 1.7E+02 0.0058 19.7 1.0 25 78-102 7-31 (62)
9 1pei_A PEPC22; transferase, nu 6.4 1.2E+02 0.0042 17.3 0.2 14 94-107 4-17 (26)
10 1nwd_B GAD, glutamate decarbox 6.0 3.1E+02 0.011 15.7 1.8 12 93-104 8-19 (28)
No 1
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=36.22 E-value=98 Score=23.27 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhhHhHHHhhhhhhhhH
Q 032322 93 KEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASL 133 (143)
Q Consensus 93 ~EKR~s~IkAWEE~EKaK~~nra~k~~s~I~aWEn~kKAk~ 133 (143)
.......|+.|...+-..+.|+...-...|+.|=...+..+
T Consensus 39 ~n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~r~el 79 (171)
T 2p2u_A 39 MNEAIDAAKARASQKSAPLLARRKELEDGVATFATLNKTEM 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Confidence 34556778999999999999999999999999987776554
No 2
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=24.01 E-value=93 Score=19.96 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=20.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhHhHHHh
Q 032322 79 SGSHDRDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAW 125 (143)
Q Consensus 79 ~gs~drD~~Larve~EKR~s~IkAWEE~EKaK~~nra~k~~s~I~aW 125 (143)
-||--++.--+|+-.|+|.+-|++= .+.-.|.+|+.|
T Consensus 10 ~~~~lsa~EkaRLrRERR~aKi~~G----------~assRLNkItg~ 46 (46)
T 3sjd_D 10 MGSELTEAEKRRLLRERRQKKFSNG----------GASSRLNKITGW 46 (46)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHH----------THHHHHHHHC--
T ss_pred ccccccHHHHHHHHHHHHHHHHHcc----------chHHHHHHHhcC
Confidence 3565667777888888888754421 145557778877
No 3
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=7.80 E-value=1.4e+02 Score=18.40 Aligned_cols=13 Identities=46% Similarity=0.802 Sum_probs=8.4
Q ss_pred CchhHHHHHHHHH
Q 032322 80 GSHDRDVALAEVE 92 (143)
Q Consensus 80 gs~drD~~Larve 92 (143)
||.|||.+|+..-
T Consensus 1 ~~~d~de~ia~F~ 13 (45)
T 3e21_A 1 GSMDREMILADFQ 13 (45)
T ss_dssp --CCHHHHHHHHH
T ss_pred CcccHHHHHHHHH
Confidence 6788888887653
No 4
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=7.48 E-value=7e+02 Score=18.33 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=12.3
Q ss_pred CchhHHHHHHHHHHH---HHHH-HHHHHHH
Q 032322 80 GSHDRDVALAEVEKE---KRES-FIKAWEE 105 (143)
Q Consensus 80 gs~drD~~Larve~E---KR~s-~IkAWEE 105 (143)
|++||-+..-+-.-+ ++++ +-.+|.+
T Consensus 30 g~~d~ri~~NtqaI~~NS~aiaanTr~lQq 59 (114)
T 2xzr_A 30 GAIDGRVTRNTQSIEKNSKAIAANTRTLQQ 59 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhhHHHHHhchHHHHHhHHHHHH
Confidence 555554444333333 2332 5567776
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=7.07 E-value=1.1e+03 Score=22.77 Aligned_cols=64 Identities=27% Similarity=0.340 Sum_probs=41.2
Q ss_pred CCCchhHHHHHHHHHHHH-HHHHH------HHHHHhhhhhHHHHHHHhhHhHHHhhhhhhhhHHHHhhhhh
Q 032322 78 ISGSHDRDVALAEVEKEK-RESFI------KAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIE 141 (143)
Q Consensus 78 ~~gs~drD~~Larve~EK-R~s~I------kAWEE~EKaK~~nra~k~~s~I~aWEn~kKAk~EAelkKiE 141 (143)
..|-++|-.++.+++.|+ |..|+ .|=|-+-.+|+++++.-+-+.|.+--+-..|++.|+-.+||
T Consensus 684 a~g~Lerqki~d~a~aE~~r~~Llel~a~s~aves~g~a~AeA~a~aea~~Ie~ea~v~~a~l~a~a~~i~ 754 (861)
T 2zuo_A 684 ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHhhhHHHhhh
Confidence 455666666666666554 33333 45555567788888888888887777777777766655554
No 6
>3myu_A High affinity transport system protein P37; Mg289, CYPL, extracytoplasmic, thiamine binding protein, lipoprotein; HET: VIB; 1.95A {Mycoplasma genitalium}
Probab=6.92 E-value=2.2e+02 Score=24.56 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHh
Q 032322 93 KEKRESFIKAWEES 106 (143)
Q Consensus 93 ~EKR~s~IkAWEE~ 106 (143)
.++|..+|+|||+-
T Consensus 162 ~e~~~~Ivnawe~k 175 (344)
T 3myu_A 162 ASEITAIKKAWNEK 175 (344)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccc
Confidence 46788889999873
No 7
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=6.88 E-value=7.1e+02 Score=18.43 Aligned_cols=48 Identities=27% Similarity=0.327 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhHhHHHhhhhhhhhHHHHhhhhh
Q 032322 84 RDVALAEVEKEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKKASLEAKLKKIE 141 (143)
Q Consensus 84 rD~~Larve~EKR~s~IkAWEE~EKaK~~nra~k~~s~I~aWEn~kKAk~EAelkKiE 141 (143)
-|.+|.++-.- ..+-..+++-...++..|..|...+-+.+...+..++
T Consensus 18 ~~~alr~ia~l----------~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~ 65 (171)
T 2p2u_A 18 AEGALAEIATI----------DRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELE 65 (171)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665443 3455677788888888888888888777777666554
No 8
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=6.45 E-value=1.7e+02 Score=19.73 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=19.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q 032322 78 ISGSHDRDVALAEVEKEKRESFIKA 102 (143)
Q Consensus 78 ~~gs~drD~~Larve~EKR~s~IkA 102 (143)
.|.+.-|--++..|-.+||+||+..
T Consensus 7 ~Gd~~~rp~l~eqVLNqKk~SLLRs 31 (62)
T 2kw3_C 7 FGDRPARPTLLEQVLNQKRLSLLRS 31 (62)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCccHHHHHHHHHHHHHhcC
Confidence 3445556678999999999998753
No 9
>1pei_A PEPC22; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=6.36 E-value=1.2e+02 Score=17.32 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhh
Q 032322 94 EKRESFIKAWEESE 107 (143)
Q Consensus 94 EKR~s~IkAWEE~E 107 (143)
|+|..+|.-||+--
T Consensus 4 e~~~eliskWe~kS 17 (26)
T 1pei_A 4 EKSIDLIQKWEEKS 17 (26)
T ss_dssp SHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 46677777777643
No 10
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=5.97 E-value=3.1e+02 Score=15.70 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHH
Q 032322 93 KEKRESFIKAWE 104 (143)
Q Consensus 93 ~EKR~s~IkAWE 104 (143)
+|-.+.+|.||.
T Consensus 8 sevqlemitawk 19 (28)
T 1nwd_B 8 SEVQLEMITAWK 19 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456678888885
Done!