Query 032322
Match_columns 143
No_of_seqs 94 out of 96
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 20:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032322.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032322hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia1 a.7.1.1 (A:272-396) al 6.5 3.3E+02 0.024 17.3 5.3 61 80-140 2-70 (125)
2 d2hsja1 c.23.10.3 (A:1-211) Un 6.4 2E+02 0.015 18.6 3.2 22 97-118 3-24 (211)
3 d1zswa2 d.32.1.10 (A:145-314) 6.0 80 0.0059 20.6 0.9 20 124-143 151-170 (170)
4 d3cgha1 a.118.8.6 (A:31-537) U 5.0 3.3E+02 0.024 19.7 3.9 30 80-109 410-443 (507)
5 d1px5a1 a.160.1.2 (A:201-346) 3.3 3.8E+02 0.028 18.6 2.9 32 97-128 8-43 (146)
6 d2ppxa1 a.35.1.3 (A:30-91) Unc 2.7 2.4E+02 0.017 15.7 0.9 12 119-130 26-37 (62)
7 d1is1a_ d.67.3.1 (A:) Ribosome 2.5 8.5E+02 0.062 16.4 4.9 36 91-126 105-143 (185)
8 d1dd5a_ d.67.3.1 (A:) Ribosome 2.5 8.5E+02 0.062 16.4 5.1 34 93-126 106-142 (184)
9 d2glia4 g.37.1.1 (A:198-228) F 2.4 1.7E+02 0.013 15.9 0.0 10 107-116 19-28 (31)
10 d2vvpa1 c.121.1.1 (A:3-158) Al 2.2 6.5E+02 0.047 16.9 3.1 37 93-130 115-151 (156)
No 1
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.45 E-value=3.3e+02 Score=17.33 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--------HHHhhHhHHHhhhhhhhhHHHHhhhh
Q 032322 80 GSHDRDVALAEVEKEKRESFIKAWEESEKTKAENK--------AQKKLSAVAAWENSKKASLEAKLKKI 140 (143)
Q Consensus 80 gs~drD~~Larve~EKR~s~IkAWEE~EKaK~~nr--------a~k~~s~I~aWEn~kKAk~EAelkKi 140 (143)
+.++||.=-...++++|.+-.-.|=+.......+| .+..+.....+..+.|-....+...+
T Consensus 2 ~~~~~e~e~l~~eY~~~As~Ll~Wi~~~~~~L~dr~f~~t~~~iq~~l~~f~~yr~~ekp~~~~Ek~~l 70 (125)
T d1hcia1 2 SAVNQENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQL 70 (125)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCCSSSTTTTHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 35677777788999999999999999888887765 45677777777766554444444433
No 2
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=6.42 E-value=2e+02 Score=18.64 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhhhHHHHHHHh
Q 032322 97 ESFIKAWEESEKTKAENKAQKK 118 (143)
Q Consensus 97 ~s~IkAWEE~EKaK~~nra~k~ 118 (143)
..++.+|-..+..|+.+++++.
T Consensus 3 ~~~~~~w~~~~~~~~~~~~~~~ 24 (211)
T d2hsja1 3 VQLLENWLLKEQEKIQTKYRHL 24 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899988999999998763
No 3
>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus cereus [TaxId: 1396]}
Probab=6.01 E-value=80 Score=20.58 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=14.4
Q ss_pred HhhhhhhhhHHHHhhhhhcC
Q 032322 124 AWENSKKASLEAKLKKIEVT 143 (143)
Q Consensus 124 aWEn~kKAk~EAelkKiEek 143 (143)
-|=.+++++||+-|.-|++|
T Consensus 151 ~~~~~~r~~~~~~~~~~~~~ 170 (170)
T d1zswa2 151 PFLEDQRAEIEANLAPIEEK 170 (170)
T ss_dssp GGGGGGHHHHHHTCCCCCCC
T ss_pred chhHhHHHHHHhhCCCccCC
Confidence 35567788888888777764
No 4
>d3cgha1 a.118.8.6 (A:31-537) Uncharacterized protein BT3984 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=4.97 E-value=3.3e+02 Score=19.73 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=24.0
Q ss_pred CchhHHHHHHHHHHHHHHHHH----HHHHHhhhh
Q 032322 80 GSHDRDVALAEVEKEKRESFI----KAWEESEKT 109 (143)
Q Consensus 80 gs~drD~~Larve~EKR~s~I----kAWEE~EKa 109 (143)
++...+..|..|-++||++|. .+|-+-.|+
T Consensus 410 ~~~s~~~~L~~I~~Qk~ia~~~~g~e~w~d~RRt 443 (507)
T d3cgha1 410 DSADKEEKQERIIVQKWIANWQLGNEAWADFRRT 443 (507)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHcCChhhHHHHHHcc
Confidence 345578899999999999984 688777665
No 5
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=3.29 E-value=3.8e+02 Score=18.55 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhhhhH----HHHHHHhhHhHHHhhhh
Q 032322 97 ESFIKAWEESEKTKA----ENKAQKKLSAVAAWENS 128 (143)
Q Consensus 97 ~s~IkAWEE~EKaK~----~nra~k~~s~I~aWEn~ 128 (143)
+.|||.|-..=+.+. =..|.-+|.-|-+||..
T Consensus 8 IRLVKhWy~~~~~~~~~~lPpsYaLELLtiyAwE~g 43 (146)
T d1px5a1 8 IRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQG 43 (146)
T ss_dssp HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHhc
Confidence 457799985443332 35799999999999965
No 6
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.69 E-value=2.4e+02 Score=15.74 Aligned_cols=12 Identities=25% Similarity=0.767 Sum_probs=9.0
Q ss_pred hHhHHHhhhhhh
Q 032322 119 LSAVAAWENSKK 130 (143)
Q Consensus 119 ~s~I~aWEn~kK 130 (143)
.+.|..||+.+.
T Consensus 26 ~~tvs~~E~G~~ 37 (62)
T d2ppxa1 26 LGTLRDWEQGRS 37 (62)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHCCCC
Confidence 457889999754
No 7
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=2.51 E-value=8.5e+02 Score=16.37 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=22.2
Q ss_pred HHHHHHHHHH-HHHHHhhhhhHHHHHHHhh--HhHHHhh
Q 032322 91 VEKEKRESFI-KAWEESEKTKAENKAQKKL--SAVAAWE 126 (143)
Q Consensus 91 ve~EKR~s~I-kAWEE~EKaK~~nra~k~~--s~I~aWE 126 (143)
+-.|.|..|+ .+++..|++|..=|--|.. ..|..++
T Consensus 105 lT~E~R~elvK~~k~~~E~akv~iRniRr~~~~~ikk~~ 143 (185)
T d1is1a_ 105 LTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALL 143 (185)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777777 4677788888766665552 2344444
No 8
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=2.51 E-value=8.5e+02 Score=16.36 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHHHHHH-HHHHHhhhhhHHHHHHHhhH--hHHHhh
Q 032322 93 KEKRESFI-KAWEESEKTKAENKAQKKLS--AVAAWE 126 (143)
Q Consensus 93 ~EKR~s~I-kAWEE~EKaK~~nra~k~~s--~I~aWE 126 (143)
.|.|..|+ .+++..|++|..=|-.|... .|..++
T Consensus 106 ~E~R~elvK~~k~~~E~aKv~iR~iR~~~~~~lk~~~ 142 (184)
T d1dd5a_ 106 TEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQ 142 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666 46777777777766655443 444444
No 9
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.40 E-value=1.7e+02 Score=15.87 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=5.3
Q ss_pred hhhhHHHHHH
Q 032322 107 EKTKAENKAQ 116 (143)
Q Consensus 107 EKaK~~nra~ 116 (143)
.++|+.||.+
T Consensus 19 DraKHqnRTH 28 (31)
T d2glia4 19 DRAKHQNRTH 28 (31)
T ss_dssp TTHHHHHHTT
T ss_pred hhhhhccccc
Confidence 3456666543
No 10
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.23 E-value=6.5e+02 Score=16.86 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhhHhHHHhhhhhh
Q 032322 93 KEKRESFIKAWEESEKTKAENKAQKKLSAVAAWENSKK 130 (143)
Q Consensus 93 ~EKR~s~IkAWEE~EKaK~~nra~k~~s~I~aWEn~kK 130 (143)
.+.-..+|.+|-..+-.. .-|.++++.+|..-|++..
T Consensus 115 ~~~a~~iv~~~l~t~F~~-ggRh~~Rv~ki~~~e~~~~ 151 (156)
T d2vvpa1 115 VAEALAIVDAFVTTPWSK-AQRHQRRIDILAEYERTHE 151 (156)
T ss_dssp HHHHHHHHHHHHHSCCCC-CHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCC-CChHHHHHHHHHHHHHcCC
Confidence 344568889998876543 2489999999998887543
Done!