BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032324
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M1C|A Chain A, Crystal Structure Of The Conserved Herpesvirus Fusion
Regulator Complex Gh-Gl
Length = 762
Score = 33.1 bits (74), Expect = 0.054, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 54 GKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCT 113
G+ TA ++ A+ Y VL AP+L P+A EQ RGL + CT
Sbjct: 460 GRALTAPMVRRALFY------ATAVLRAPFLAGAPSA-----EQRERARRGLLITTALCT 508
Query: 114 AGVARSNGADIWAPIKTT 131
+ VA + AD+ A + T
Sbjct: 509 SDVAAATHADLRAALART 526
>pdb|3T63|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T63|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 238
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 24 HKADLSISAKERKEKLGERIIALQQLVSPYGK--TDTASVLWEAMEYIQFLHEQVKVLS 80
H DL ++ +GERII ++V YGK +T +W+A ++ H+ + L+
Sbjct: 59 HDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLA 117
>pdb|3MI1|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI1|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 238
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 24 HKADLSISAKERKEKLGERIIALQQLVSPYGK--TDTASVLWEAMEYIQFLHEQVKVLS 80
H DL ++ +GERII ++V YGK +T +W+A ++ H+ + L+
Sbjct: 59 HDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLA 117
>pdb|2PCD|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|2PCD|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase From
Pseudomonas Aeruginosa At 2.15 Angstroms Resolution
pdb|3PCF|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCF|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Fluro-4- Hydroxybenzoate
pdb|3PCH|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCH|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Chloro- 4-Hydroxybenzoate
pdb|3PCL|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCL|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide And Cyanide
pdb|3PCM|M Chain M, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|N Chain N, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|O Chain O, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|P Chain P, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|Q Chain Q, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCM|R Chain R, Structure Of Protocatechuate 3,4-dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-oxide And Cyanide
pdb|3PCA|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCA|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxybenzoate
pdb|3PCI|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCI|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3-Iodo-4- Hydroxybenzoate
pdb|3PCJ|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCJ|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 2- Hydroxyisonicotinic Acid N-Oxide
pdb|3PCK|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCK|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 6- Hydroxynicotinic Acid N-Oxide
pdb|3PCN|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCN|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3,4- Dihydroxyphenylacetate
pdb|3PCB|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCB|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxybenzoate
pdb|3PCC|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCC|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 4- Hydroxybenzoate
pdb|3PCE|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCE|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With 3- Hydroxyphenylacetate
pdb|3PCG|M Chain M, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|N Chain N, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|O Chain O, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|P Chain P, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|Q Chain Q, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3PCG|R Chain R, Structure Of Protocatechuate 3,4-Dioxygenase Complexed
With The Inhibitor 4-Hydroxyphenylacetate
pdb|3T67|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3T67|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 238
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 24 HKADLSISAKERKEKLGERIIALQQLVSPYGK--TDTASVLWEAMEYIQFLHEQVKVLS 80
H DL ++ +GERII ++V YGK +T +W+A ++ H+ + L+
Sbjct: 59 HDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLA 117
>pdb|3MFL|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MFL|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MFL|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|P Chain P, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|Q Chain Q, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MI5|R Chain R, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV4|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|M Chain M, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|N Chain N, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
pdb|3MV6|O Chain O, Axial Ligand Swapping In Double Mutant Maintains
Intradiol-Cleavage Chemistry In Protocatechuate
3,4-Dioxygenase
Length = 238
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 24 HKADLSISAKERKEKLGERIIALQQLVSPYGK--TDTASVLWEAMEYIQFLHEQVKVLS 80
H DL ++ +GERII ++V YGK +T +W+A ++ H+ + L+
Sbjct: 59 HDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLA 117
>pdb|3PCD|M Chain M, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|N Chain N, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|O Chain O, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|P Chain P, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|Q Chain Q, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3PCD|R Chain R, Protocatechuate 3,4-Dioxygenase Y447h Mutant
pdb|3LMX|M Chain M, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LMX|N Chain N, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LMX|O Chain O, Tyrosine 447 Of Protocatechuate 34,-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|M Chain M, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|N Chain N, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|O Chain O, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|P Chain P, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|Q Chain Q, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LKT|R Chain R, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|M Chain M, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|N Chain N, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
pdb|3LXV|O Chain O, Tyrosine 447 Of Protocatechuate 3,4-Dioxygenase Controls
Efficient Progress Through Catalysis
Length = 238
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 24 HKADLSISAKERKEKLGERIIALQQLVSPYGK--TDTASVLWEAMEYIQFLHEQVKVLS 80
H DL ++ +GERII ++V YGK +T +W+A ++ H+ + L+
Sbjct: 59 HDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLA 117
>pdb|1YKO|B Chain B, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|D Chain D, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|F Chain F, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|H Chain H, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|J Chain J, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKO|L Chain L, Protocatechuate 3,4-Dioxygenase Y408h Mutant
pdb|1YKP|B Chain B, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|D Chain D, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|F Chain F, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|H Chain H, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|J Chain J, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
pdb|1YKP|L Chain L, Protocatechuate 3,4-Dioxygenase Y408h Mutant Bound To Dhb
Length = 238
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 24 HKADLSISAKERKEKLGERIIALQQLVSPYGK--TDTASVLWEAMEYIQFLHEQVKVLS 80
H DL ++ +GERII ++V YGK +T +W+A + H+ + L+
Sbjct: 59 HDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRHRHKNDRYLA 117
>pdb|1YKL|B Chain B, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|D Chain D, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|F Chain F, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|H Chain H, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|J Chain J, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
pdb|1YKL|L Chain L, Protocatechuate 3,4-Dioxygenase Y408c Mutant Bound To Dhb
Length = 238
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 24 HKADLSISAKERKEKLGERIIALQQLVSPYGK--TDTASVLWEAMEYIQFLHEQVKVLS 80
H DL ++ +GERII ++V YGK +T +W+A + H+ + L+
Sbjct: 59 HDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRCRHKNDRYLA 117
>pdb|1YKK|B Chain B, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|D Chain D, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|F Chain F, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|H Chain H, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|J Chain J, Protocatechuate 3,4-dioxygenase Y408c Mutant
pdb|1YKK|L Chain L, Protocatechuate 3,4-dioxygenase Y408c Mutant
Length = 238
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 24 HKADLSISAKERKEKLGERIIALQQLVSPYGK--TDTASVLWEAMEYIQFLHEQVKVLS 80
H DL ++ +GERII ++V YGK +T +W+A + H+ + L+
Sbjct: 59 HDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRCRHKNDRYLA 117
>pdb|3GAC|A Chain A, Structure Of Mif With Hpp
pdb|3GAC|B Chain B, Structure Of Mif With Hpp
pdb|3GAC|C Chain C, Structure Of Mif With Hpp
pdb|3GAC|D Chain D, Structure Of Mif With Hpp
pdb|3GAC|E Chain E, Structure Of Mif With Hpp
pdb|3GAC|F Chain F, Structure Of Mif With Hpp
pdb|3GAD|A Chain A, Structure Of Apomif
pdb|3GAD|B Chain B, Structure Of Apomif
pdb|3GAD|C Chain C, Structure Of Apomif
pdb|3GAD|D Chain D, Structure Of Apomif
pdb|3GAD|E Chain E, Structure Of Apomif
pdb|3GAD|F Chain F, Structure Of Apomif
Length = 117
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 77 KVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGADIWAPI 128
VL P M Q+ ++S N G C V ++ G+ RSN + + I
Sbjct: 29 NVLGKPVAYIMSNYDYQKNLRFSGSNEGYCFVRLTSIGGINRSNNSSLADKI 80
>pdb|1YKM|B Chain B, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|D Chain D, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|F Chain F, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|H Chain H, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|J Chain J, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKM|L Chain L, Protocatechuate 3,4-dioxygenase Y408e Mutant
pdb|1YKN|B Chain B, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|D Chain D, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|F Chain F, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|H Chain H, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|J Chain J, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
pdb|1YKN|L Chain L, Protocatechuate 3,4-Dioxygenase Y408e Mutant Bound To Dhb
Length = 238
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 24 HKADLSISAKERKEKLGERIIALQQLVSPYGK--TDTASVLWEAMEYIQFLHEQVKVLS 80
H DL ++ +GERII ++V YGK +T +W+A + H+ + L+
Sbjct: 59 HDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRERHKNDRYLA 117
>pdb|2WKB|A Chain A, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|B Chain B, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|C Chain C, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|D Chain D, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|E Chain E, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
pdb|2WKB|F Chain F, Crystal Structure Of Macrophage Migration Inhibitory
Factor From Plasmodium Berghei
Length = 125
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 77 KVLSAPYLQSMPAAKVQELEQYSLRNRGLCLVPISCTAGVARSNGA 122
+L P M Q+ ++S N G C V ++ G+ RSN +
Sbjct: 29 NILGKPVAYIMSNYDYQKNLRFSGSNEGYCFVRLTSIGGINRSNNS 74
>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
Length = 82
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 39 LGERIIALQQLV-SPYGKTDTASVLWEAMEYIQFL 72
+ ++II L+ LV K + ++VL +A++YI+FL
Sbjct: 21 INDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFL 55
>pdb|2YCH|A Chain A, Pilm-Piln Type Iv Pilus Biogenesis Complex
Length = 377
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 60 SVLWEAMEYIQFLHEQVKVLSAPYLQSMPAAKVQELEQ 97
+V WEA YI F ++V + AP P ++VQE EQ
Sbjct: 106 AVRWEAERYIPFPIDEVVLDFAPL---TPLSEVQEGEQ 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,746,870
Number of Sequences: 62578
Number of extensions: 123614
Number of successful extensions: 342
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 16
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)