Query 032324
Match_columns 143
No_of_seqs 207 out of 861
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 12:36:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.6 8E-15 1.7E-19 94.5 5.6 54 24-77 4-60 (60)
2 smart00353 HLH helix loop heli 99.5 8E-14 1.7E-18 88.3 6.9 49 29-77 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.5 2.9E-14 6.3E-19 91.7 4.8 49 25-73 2-55 (55)
4 KOG1318 Helix loop helix trans 99.0 5.5E-10 1.2E-14 98.1 5.9 54 25-78 234-291 (411)
5 KOG1319 bHLHZip transcription 99.0 2.8E-10 6.1E-15 91.5 3.3 59 23-81 61-126 (229)
6 KOG4304 Transcriptional repres 98.7 9.6E-09 2.1E-13 85.2 4.1 55 24-78 32-94 (250)
7 KOG2588 Predicted DNA-binding 98.5 5.5E-08 1.2E-12 92.2 3.3 65 23-87 275-340 (953)
8 KOG3561 Aryl-hydrocarbon recep 98.5 2.3E-07 5E-12 87.3 6.1 55 21-75 17-75 (803)
9 KOG2483 Upstream transcription 98.1 5.4E-06 1.2E-10 68.4 6.5 58 25-82 60-120 (232)
10 KOG4029 Transcription factor H 98.0 2.7E-05 5.9E-10 63.0 7.8 62 23-84 108-173 (228)
11 KOG0561 bHLH transcription fac 97.8 2.4E-05 5.1E-10 67.2 4.1 50 28-77 64-115 (373)
12 PLN03217 transcription factor 97.7 7.8E-05 1.7E-09 53.3 5.3 49 36-84 19-73 (93)
13 KOG3960 Myogenic helix-loop-he 97.6 0.00019 4.1E-09 60.2 6.4 59 26-84 120-180 (284)
14 KOG3910 Helix loop helix trans 95.6 0.011 2.4E-07 53.9 3.3 59 21-79 523-585 (632)
15 KOG4447 Transcription factor T 94.9 0.014 3E-07 46.0 1.5 51 27-77 81-133 (173)
16 KOG3558 Hypoxia-inducible fact 92.2 0.11 2.4E-06 49.1 2.8 44 28-71 50-97 (768)
17 KOG3559 Transcriptional regula 89.5 0.42 9.1E-06 43.3 3.7 43 29-71 6-52 (598)
18 KOG3560 Aryl-hydrocarbon recep 87.5 0.48 1E-05 44.1 2.9 43 28-70 29-75 (712)
19 KOG3898 Transcription factor N 83.6 1.2 2.6E-05 37.1 3.2 49 27-75 75-126 (254)
20 KOG4395 Transcription factor A 80.4 3.2 7E-05 35.3 4.6 54 23-76 173-229 (285)
21 KOG3582 Mlx interactors and re 61.7 2.1 4.5E-05 41.0 -0.7 56 26-81 653-713 (856)
22 TIGR00986 3a0801s05tom22 mitoc 60.5 5.2 0.00011 31.2 1.4 39 36-74 48-86 (145)
23 KOG4447 Transcription factor T 55.8 9.2 0.0002 30.4 2.1 45 30-74 28-74 (173)
24 PF04281 Tom22: Mitochondrial 50.7 11 0.00024 29.0 1.8 39 35-73 49-87 (137)
25 COG3074 Uncharacterized protei 47.2 11 0.00025 26.2 1.3 26 62-87 13-38 (79)
26 KOG3584 cAMP response element 41.7 18 0.00039 31.5 1.9 19 66-84 311-329 (348)
27 PF10465 Inhibitor_I24: PinA p 35.1 33 0.00071 26.3 2.2 19 58-76 121-139 (140)
28 PF12029 DUF3516: Domain of un 29.5 77 0.0017 29.0 4.0 37 38-77 274-310 (461)
29 KOG3582 Mlx interactors and re 27.4 21 0.00046 34.5 0.1 55 26-83 789-848 (856)
30 PF14689 SPOB_a: Sensor_kinase 25.4 86 0.0019 20.3 2.7 41 33-80 17-57 (62)
31 PRK15422 septal ring assembly 24.7 82 0.0018 22.2 2.6 25 62-86 13-37 (79)
32 PF03791 KNOX2: KNOX2 domain ; 24.6 1E+02 0.0023 19.9 2.9 20 61-80 32-51 (52)
33 PF12180 EABR: TSG101 and ALIX 24.4 81 0.0018 19.0 2.2 13 67-79 23-35 (35)
34 PTZ00405 cytochrome c; Provisi 22.1 1.5E+02 0.0032 21.6 3.7 38 36-73 72-113 (114)
35 PF09321 DUF1978: Domain of un 22.0 1.2E+02 0.0025 25.6 3.5 17 37-53 116-132 (241)
36 KOG4832 Uncharacterized conser 21.9 1.9E+02 0.004 24.5 4.6 43 38-80 12-56 (253)
37 KOG3042 Panthothenate syntheta 21.4 1.7E+02 0.0037 24.8 4.3 48 28-76 196-243 (283)
38 PRK13702 replication protein; 21.2 3.2E+02 0.0068 19.5 5.4 41 27-67 23-76 (85)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.55 E-value=8e-15 Score=94.47 Aligned_cols=54 Identities=22% Similarity=0.460 Sum_probs=49.9
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHhccCCC---CCCChHHHHHHHHHHHHHHHHHHH
Q 032324 24 HKADLSISAKERKEKLGERIIALQQLVSPY---GKTDTASVLWEAMEYIQFLHEQVK 77 (143)
Q Consensus 24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~---~K~dkAsvL~eAI~YIk~Lq~qv~ 77 (143)
.+..|+..||.||++||+.|..|+.+||+. .|+||++||+.||+||++|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 345699999999999999999999999987 899999999999999999998863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.50 E-value=8e-14 Score=88.31 Aligned_cols=49 Identities=29% Similarity=0.453 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhccC---CCCCCChHHHHHHHHHHHHHHHHHHH
Q 032324 29 SISAKERKEKLGERIIALQQLVS---PYGKTDTASVLWEAMEYIQFLHEQVK 77 (143)
Q Consensus 29 ~~~Er~RR~kI~~~~~~L~~LVP---~~~K~dkAsvL~eAI~YIk~Lq~qv~ 77 (143)
+..||.||++||+.|..|+.+|| +..|+||++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999 47799999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.50 E-value=2.9e-14 Score=91.66 Aligned_cols=49 Identities=22% Similarity=0.439 Sum_probs=45.9
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHHHHHHHH
Q 032324 25 KADLSISAKERKEKLGERIIALQQLVSPY-----GKTDTASVLWEAMEYIQFLH 73 (143)
Q Consensus 25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~~-----~K~dkAsvL~eAI~YIk~Lq 73 (143)
+..|+..||+||++||+.|..|+.+||.. .|+||++||+.||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 35699999999999999999999999976 78999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.00 E-value=5.5e-10 Score=98.11 Aligned_cols=54 Identities=22% Similarity=0.427 Sum_probs=48.4
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhccCCC----CCCChHHHHHHHHHHHHHHHHHHHH
Q 032324 25 KADLSISAKERKEKLGERIIALQQLVSPY----GKTDTASVLWEAMEYIQFLHEQVKV 78 (143)
Q Consensus 25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~~----~K~dkAsvL~eAI~YIk~Lq~qv~~ 78 (143)
|..|+..||+||++||++|.+|..|||++ .+.+|..||..+.+||+.||+..+.
T Consensus 234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 34599999999999999999999999976 4677999999999999999987663
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.98 E-value=2.8e-10 Score=91.50 Aligned_cols=59 Identities=27% Similarity=0.425 Sum_probs=51.4
Q ss_pred cccccCcHHHHHHHHHHHHHHHHHHhccCCC-------CCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324 23 RHKADLSISAKERKEKLGERIIALQQLVSPY-------GKTDTASVLWEAMEYIQFLHEQVKVLSA 81 (143)
Q Consensus 23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~-------~K~dkAsvL~eAI~YIk~Lq~qv~~L~~ 81 (143)
++|..|..+||+||+.|+.....|+.|||.+ .|+.||.||..+|+||.+|+.++.+-+.
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~ 126 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEE 126 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456699999999999999999999999943 3888999999999999999988766554
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.73 E-value=9.6e-09 Score=85.20 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=48.3
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHhccCC--------CCCCChHHHHHHHHHHHHHHHHHHHH
Q 032324 24 HKADLSISAKERKEKLGERIIALQQLVSP--------YGKTDTASVLWEAMEYIQFLHEQVKV 78 (143)
Q Consensus 24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~--------~~K~dkAsvL~eAI~YIk~Lq~qv~~ 78 (143)
.+..+-+.||+||+|||+.+.+|+.||+. -.|++||.||+-|++|++.||.+...
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34458999999999999999999999993 27899999999999999999986543
No 7
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.52 E-value=5.5e-08 Score=92.20 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=58.5
Q ss_pred cccccCcHHHHHHHHHHHHHHHHHHhccCC-CCCCChHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 032324 23 RHKADLSISAKERKEKLGERIIALQQLVSP-YGKTDTASVLWEAMEYIQFLHEQVKVLSAPYLQSM 87 (143)
Q Consensus 23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~-~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~~~~ 87 (143)
-.|..|+++||+.|-.|||+|.+|+.+||+ ..|+.|.++|..||+||++|+...+.+..+.+...
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 446679999999999999999999999997 67999999999999999999999988887766554
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.47 E-value=2.3e-07 Score=87.28 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=49.6
Q ss_pred cccccccCcHHHHHHHHHHHHHHHHHHhccCCC----CCCChHHHHHHHHHHHHHHHHH
Q 032324 21 SKRHKADLSISAKERKEKLGERIIALQQLVSPY----GKTDTASVLWEAMEYIQFLHEQ 75 (143)
Q Consensus 21 ~k~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~----~K~dkAsvL~eAI~YIk~Lq~q 75 (143)
.++.+..|+.+||+||+++|.-|.+|..|||.+ .|+||.+||.+||++||.++++
T Consensus 17 ~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 17 DRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 344466799999999999999999999999975 5999999999999999999885
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.15 E-value=5.4e-06 Score=68.38 Aligned_cols=58 Identities=24% Similarity=0.215 Sum_probs=48.6
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhccCC--CCCCC-hHHHHHHHHHHHHHHHHHHHHhccc
Q 032324 25 KADLSISAKERKEKLGERIIALQQLVSP--YGKTD-TASVLWEAMEYIQFLHEQVKVLSAP 82 (143)
Q Consensus 25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~d-kAsvL~eAI~YIk~Lq~qv~~L~~~ 82 (143)
+..|+.-||+||+.|.++|..|+.+||. +.+.. +++||..|++||+.|+.+....+..
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~ 120 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQD 120 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHH
Confidence 3459999999999999999999999995 23333 6999999999999999987765543
No 10
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.00 E-value=2.7e-05 Score=63.01 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=53.6
Q ss_pred cccccCcHHHHHHHHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHHHHHHHHHhccccc
Q 032324 23 RHKADLSISAKERKEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL 84 (143)
Q Consensus 23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~ 84 (143)
..+..++..||.|=.-+|..|..|+.+||. ..|..|..+|..||.||++|+.-++.-+..+.
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~~ 173 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPLN 173 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCCC
Confidence 334457778999999999999999999993 56899999999999999999999988887664
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.79 E-value=2.4e-05 Score=67.20 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 032324 28 LSISAKERKEKLGERIIALQQLVSP--YGKTDTASVLWEAMEYIQFLHEQVK 77 (143)
Q Consensus 28 h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~dkAsvL~eAI~YIk~Lq~qv~ 77 (143)
-+..||+|=..||..|..|+.|+|. +.|..||.||+.+.+||..|..+.-
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence 5667999999999999999999994 7899999999999999999987543
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.72 E-value=7.8e-05 Score=53.35 Aligned_cols=49 Identities=35% Similarity=0.484 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhccCC------CCCCChHHHHHHHHHHHHHHHHHHHHhccccc
Q 032324 36 KEKLGERIIALQQLVSP------YGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL 84 (143)
Q Consensus 36 R~kI~~~~~~L~~LVP~------~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~ 84 (143)
-+.|+|-+..||+|+|. ..|...+-||+||..||+.||.+|..|++...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs 73 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999995 34566677999999999999999999987543
No 13
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.57 E-value=0.00019 Score=60.22 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=49.6
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHhc-cC-CCCCCChHHHHHHHHHHHHHHHHHHHHhccccc
Q 032324 26 ADLSISAKERKEKLGERIIALQQL-VS-PYGKTDTASVLWEAMEYIQFLHEQVKVLSAPYL 84 (143)
Q Consensus 26 ~~h~~~Er~RR~kI~~~~~~L~~L-VP-~~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~ 84 (143)
.+-.+-||+|=.|+||.|.+|+.= ++ +....-|..||..||+||..||.-++.+.+...
T Consensus 120 KAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 120 KAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 345678999999999999999554 44 567899999999999999999999998876543
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.57 E-value=0.011 Score=53.92 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=47.6
Q ss_pred cccccccCcHHHHHHHHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHHHHHHHHHh
Q 032324 21 SKRHKADLSISAKERKEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQFLHEQVKVL 79 (143)
Q Consensus 21 ~k~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~Lq~qv~~L 79 (143)
-|.+|.+++.-||.|=.-|||.|++|-.+.-- .....|--||..|+.-|-.|++||.+-
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 34455567888888888999999999887653 334567889999999999999999873
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.87 E-value=0.014 Score=46.02 Aligned_cols=51 Identities=25% Similarity=0.435 Sum_probs=45.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHHhccC--CCCCCChHHHHHHHHHHHHHHHHHHH
Q 032324 27 DLSISAKERKEKLGERIIALQQLVS--PYGKTDTASVLWEAMEYIQFLHEQVK 77 (143)
Q Consensus 27 ~h~~~Er~RR~kI~~~~~~L~~LVP--~~~K~dkAsvL~eAI~YIk~Lq~qv~ 77 (143)
.|++-||+|=..+|+.|.+||.++| +..|..|.--|.-|..||-||-.-.+
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 4888999999999999999999999 57889999999999999999976443
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.23 E-value=0.11 Score=49.12 Aligned_cols=44 Identities=23% Similarity=0.367 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHH
Q 032324 28 LSISAKERKEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQF 71 (143)
Q Consensus 28 h~~~Er~RR~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~ 71 (143)
.--+.|.||.|-|+-|.+|..++|- ....|||+|+.-||-|+|-
T Consensus 50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 3457788999999999999999993 4679999999999999874
No 17
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.48 E-value=0.42 Score=43.28 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHH
Q 032324 29 SISAKERKEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQF 71 (143)
Q Consensus 29 ~~~Er~RR~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~ 71 (143)
..+.|.||++-|-.|.+|.+++|- .+..|||+|+.-|--|||-
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 346789999999999999999993 4669999999999999985
No 18
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=87.55 E-value=0.48 Score=44.13 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccC----CCCCCChHHHHHHHHHHHH
Q 032324 28 LSISAKERKEKLGERIIALQQLVS----PYGKTDTASVLWEAMEYIQ 70 (143)
Q Consensus 28 h~~~Er~RR~kI~~~~~~L~~LVP----~~~K~dkAsvL~eAI~YIk 70 (143)
.+.-.|+-|||+|..++.|.+|+| ...|.||-|||.-++-|++
T Consensus 29 kSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 29 KSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 334456679999999999999999 3689999999999999986
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=83.62 E-value=1.2 Score=37.09 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=40.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHH
Q 032324 27 DLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQ 75 (143)
Q Consensus 27 ~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~q 75 (143)
.-+.-||.|--.+|+-++.|+.++|. ..|+.|...|.-|-.||..|++-
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 35566888888899999999999994 57888999998888998888753
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=80.38 E-value=3.2 Score=35.29 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=44.3
Q ss_pred cccccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHH
Q 032324 23 RHKADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQV 76 (143)
Q Consensus 23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv 76 (143)
+++..-+.-||+|=..+|..|+.|+..||. ..|..|-..|+.|-.||--|-...
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 444556778999999999999999999995 456778889999999998876543
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=61.67 E-value=2.1 Score=40.99 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=47.6
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHhccCC-----CCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324 26 ADLSISAKERKEKLGERIIALQQLVSP-----YGKTDTASVLWEAMEYIQFLHEQVKVLSA 81 (143)
Q Consensus 26 ~~h~~~Er~RR~kI~~~~~~L~~LVP~-----~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~ 81 (143)
..|+.+|++||+.|.-++..|-.++.. ..|+.++.-++.+++||--++.+...+.+
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~ 713 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQE 713 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccch
Confidence 349999999999999999999999885 46788888899999999988876655544
No 22
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=60.50 E-value=5.2 Score=31.17 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHH
Q 032324 36 KEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHE 74 (143)
Q Consensus 36 R~kI~~~~~~L~~LVP~~~K~dkAsvL~eAI~YIk~Lq~ 74 (143)
-|-|.+||.+|+.+||+..+.--.++..-+..++|.+-.
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~s 86 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTLS 86 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999998777777777777777776643
No 23
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=55.80 E-value=9.2 Score=30.37 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHH
Q 032324 30 ISAKERKEKLGERIIALQQLVSP--YGKTDTASVLWEAMEYIQFLHE 74 (143)
Q Consensus 30 ~~Er~RR~kI~~~~~~L~~LVP~--~~K~dkAsvL~eAI~YIk~Lq~ 74 (143)
-.|+.|..++++.+.-|+.|+|+ .+++.+---|.-+-+||.+|.+
T Consensus 28 ~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 28 RKERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 36888999999999999999995 2333222225555566665544
No 24
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=50.72 E-value=11 Score=28.95 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHH
Q 032324 35 RKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLH 73 (143)
Q Consensus 35 RR~kI~~~~~~L~~LVP~~~K~dkAsvL~eAI~YIk~Lq 73 (143)
.-|-|.+||-+|+.+||+..+.--.+++.-+..++|.+-
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~ 87 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLF 87 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999998766656666666666666553
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.24 E-value=11 Score=26.20 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCC
Q 032324 62 LWEAMEYIQFLHEQVKVLSAPYLQSM 87 (143)
Q Consensus 62 L~eAI~YIk~Lq~qv~~L~~~~~~~~ 87 (143)
++.||+-|.-||..|.+|.+.+....
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 56799999999999999998765443
No 26
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=41.74 E-value=18 Score=31.51 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhccccc
Q 032324 66 MEYIQFLHEQVKVLSAPYL 84 (143)
Q Consensus 66 I~YIk~Lq~qv~~L~~~~~ 84 (143)
-+|||.|+.+|.+||..+.
T Consensus 311 KEYVKCLENRVAVLENQNK 329 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQNK 329 (348)
T ss_pred hHHHHHHHhHHHHHhcccH
Confidence 4899999999999998654
No 27
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=35.06 E-value=33 Score=26.34 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032324 58 TASVLWEAMEYIQFLHEQV 76 (143)
Q Consensus 58 kAsvL~eAI~YIk~Lq~qv 76 (143)
-..+.+.|.+||..|+.|+
T Consensus 121 EgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 121 EGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred hhhHHHHHHHHHHHHHhhc
Confidence 3558899999999999886
No 28
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=29.47 E-value=77 Score=29.01 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 032324 38 KLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVK 77 (143)
Q Consensus 38 kI~~~~~~L~~LVP~~~K~dkAsvL~eAI~YIk~Lq~qv~ 77 (143)
-+.+-..+|++-||..-+++. |.+.|+|+..|-.||.
T Consensus 274 YLsDAyraL~qtVP~~~rtee---l~dii~WLgelVRqVD 310 (461)
T PF12029_consen 274 YLSDAYRALRQTVPEDARTEE---LEDIIEWLGELVRQVD 310 (461)
T ss_pred HHHHHHHHHhhhCChhhcCch---HHHHHHHHHHHHHhcc
Confidence 678899999999999999988 8999999999988884
No 29
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=27.37 E-value=21 Score=34.47 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=45.5
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHhccCC-----CCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324 26 ADLSISAKERKEKLGERIIALQQLVSP-----YGKTDTASVLWEAMEYIQFLHEQVKVLSAPY 83 (143)
Q Consensus 26 ~~h~~~Er~RR~kI~~~~~~L~~LVP~-----~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~ 83 (143)
..|..++|++|-.+-+++..|-.|.|. -.++.+++||. +.|+.++..-+.+.+..
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 347889999999999999999999994 45688999998 88888888777766543
No 30
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.40 E-value=86 Score=20.27 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 032324 33 KERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLS 80 (143)
Q Consensus 33 r~RR~kI~~~~~~L~~LVP~~~K~dkAsvL~eAI~YIk~Lq~qv~~L~ 80 (143)
|.-|--....+..+..++--+ + .++|.+||+.+-.+++.++
T Consensus 17 R~~RHD~~NhLqvI~gllqlg----~---~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLG----K---YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC----C---HHHHHHHHHHHHHHHHHHH
Confidence 444656666677777776432 2 6788999999999888764
No 31
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.67 E-value=82 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCC
Q 032324 62 LWEAMEYIQFLHEQVKVLSAPYLQS 86 (143)
Q Consensus 62 L~eAI~YIk~Lq~qv~~L~~~~~~~ 86 (143)
++.|||-|--||..|.+|++.+...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L 37 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999865443
No 32
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=24.64 E-value=1e+02 Score=19.90 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 032324 61 VLWEAMEYIQFLHEQVKVLS 80 (143)
Q Consensus 61 vL~eAI~YIk~Lq~qv~~L~ 80 (143)
-+.||+.+++.++.|+..|.
T Consensus 32 p~~EA~~f~~~ie~qL~~Lt 51 (52)
T PF03791_consen 32 PFQEAMEFCREIEQQLSSLT 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35699999999999998874
No 33
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=24.38 E-value=81 Score=18.97 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q 032324 67 EYIQFLHEQVKVL 79 (143)
Q Consensus 67 ~YIk~Lq~qv~~L 79 (143)
+||+.|+.++++|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 6899999888775
No 34
>PTZ00405 cytochrome c; Provisional
Probab=22.11 E-value=1.5e+02 Score=21.61 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHHHH
Q 032324 36 KEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQFLH 73 (143)
Q Consensus 36 R~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~Lq 73 (143)
.+.|..-+..=+.++|+ +....++.-..+-|.||+.|.
T Consensus 72 ~~~L~~~l~~P~~~~pgt~M~f~gl~~~~dr~~liaYL~sl~ 113 (114)
T PTZ00405 72 PEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETLK 113 (114)
T ss_pred HHHHHHHHHCHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 34555556666778884 333456667778899999885
No 35
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=21.98 E-value=1.2e+02 Score=25.59 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhccCCC
Q 032324 37 EKLGERIIALQQLVSPY 53 (143)
Q Consensus 37 ~kI~~~~~~L~~LVP~~ 53 (143)
++..+|+.+||+|.|+.
T Consensus 116 ~ra~eRl~~LqalYp~v 132 (241)
T PF09321_consen 116 ERAQERLRELQALYPEV 132 (241)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 45678999999999964
No 36
>KOG4832 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.87 E-value=1.9e+02 Score=24.51 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccC--CCCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 032324 38 KLGERIIALQQLVS--PYGKTDTASVLWEAMEYIQFLHEQVKVLS 80 (143)
Q Consensus 38 kI~~~~~~L~~LVP--~~~K~dkAsvL~eAI~YIk~Lq~qv~~L~ 80 (143)
.+|+++.+|+.|+. .++.--+..+|-..++-|.....+++.++
T Consensus 12 s~ne~igEl~kl~s~rnm~~e~TI~~L~aI~~~~~sieLllq~ik 56 (253)
T KOG4832|consen 12 SVNEKIGELKKLLSLRNMGQEPTIKVLNAIGDEIISIELLLQKIK 56 (253)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 57777777777766 23334455577777777777777777554
No 37
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=21.38 E-value=1.7e+02 Score=24.76 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHHH
Q 032324 28 LSISAKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQV 76 (143)
Q Consensus 28 h~~~Er~RR~kI~~~~~~L~~LVP~~~K~dkAsvL~eAI~YIk~Lq~qv 76 (143)
-..-||++-+.|...+.++.+-|. .+++|.+.+.++.+.|+-.-.-.+
T Consensus 196 L~~Eerkia~nlyr~Lk~a~~~i~-~G~~~~~elid~~~q~v~~~~f~~ 243 (283)
T KOG3042|consen 196 LCPEERKIAENLYRGLKAAENAIR-GGRLSRSELIDTVTQYVDSHDFKI 243 (283)
T ss_pred cChHHHHhhHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHhhccCcc
Confidence 567799999999999999988777 678999999999998876544333
No 38
>PRK13702 replication protein; Provisional
Probab=21.22 E-value=3.2e+02 Score=19.51 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=28.5
Q ss_pred cCcHHHHHH--HHHHHHHHHHHHhccCCC-----------CCCChHHHHHHHHH
Q 032324 27 DLSISAKER--KEKLGERIIALQQLVSPY-----------GKTDTASVLWEAME 67 (143)
Q Consensus 27 ~h~~~Er~R--R~kI~~~~~~L~~LVP~~-----------~K~dkAsvL~eAI~ 67 (143)
..+.+||.| .-|..+.-.+|+-+|++. .....|.||+..|+
T Consensus 23 Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 23 PLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 478899988 345556677888888853 34567777776664
Done!