Query 032324
Match_columns 143
No_of_seqs 207 out of 861
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 20:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 9.7E-18 3.3E-22 116.3 5.5 60 25-84 7-67 (82)
2 4h10_B Circadian locomoter out 99.7 9.1E-17 3.1E-21 109.4 6.5 58 24-81 8-66 (71)
3 4ati_A MITF, microphthalmia-as 99.6 2.5E-16 8.4E-21 116.0 6.9 59 24-82 27-89 (118)
4 1a0a_A BHLH, protein (phosphat 99.6 5.6E-17 1.9E-21 107.8 1.1 53 25-77 3-62 (63)
5 1an4_A Protein (upstream stimu 99.6 1.7E-16 5.9E-21 105.0 2.5 53 24-76 5-63 (65)
6 4h10_A ARYL hydrocarbon recept 99.6 4.5E-16 1.5E-20 106.4 2.0 52 23-74 8-63 (73)
7 1nkp_B MAX protein, MYC proto- 99.6 3.1E-15 1.1E-19 103.2 5.4 59 25-83 3-63 (83)
8 1hlo_A Protein (transcription 99.6 2.7E-15 9.1E-20 103.1 4.9 60 24-83 12-73 (80)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 9.2E-15 3.1E-19 102.7 5.5 58 25-82 7-67 (88)
10 3u5v_A Protein MAX, transcript 99.5 2.5E-14 8.5E-19 98.3 5.8 58 24-81 5-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.4 2.6E-13 9E-18 93.8 6.0 59 25-83 2-63 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.2 4E-12 1.4E-16 85.6 3.6 55 22-76 10-66 (68)
13 4f3l_A Mclock, circadian locom 99.1 4.4E-11 1.5E-15 99.5 6.4 55 22-76 10-65 (361)
14 2ql2_B Neurod1, neurogenic dif 99.1 4.3E-11 1.5E-15 78.6 5.0 53 25-77 3-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 1.8E-10 6E-15 97.1 4.4 53 23-75 12-68 (387)
16 4ath_A MITF, microphthalmia-as 98.9 2.6E-09 8.8E-14 74.6 5.7 47 36-82 4-54 (83)
17 2lfh_A DNA-binding protein inh 98.7 3.5E-09 1.2E-13 71.4 1.9 46 29-74 19-67 (68)
18 4aya_A DNA-binding protein inh 98.3 1.9E-06 6.7E-11 61.5 6.8 50 32-81 33-85 (97)
19 3fx7_A Putative uncharacterize 62.0 4.4 0.00015 28.3 2.2 25 62-86 65-89 (94)
20 1xkm_B Distinctin chain B; por 56.2 17 0.00059 19.3 3.4 20 59-78 3-22 (26)
21 3muj_A Transcription factor CO 53.4 21 0.00073 26.5 4.8 35 38-72 95-133 (138)
22 2wt7_A Proto-oncogene protein 48.2 32 0.0011 21.6 4.5 39 32-83 1-39 (63)
23 1pd7_B MAD1; PAH2, SIN3, eukar 38.8 40 0.0014 18.2 3.2 19 56-74 2-20 (26)
24 2fhx_A SPM-1; metallo-beta-lac 34.5 20 0.00069 26.4 2.2 30 48-77 216-245 (246)
25 1f1f_A Cytochrome C6; heme, pr 32.3 84 0.0029 19.1 4.7 39 36-75 48-87 (89)
26 1a7t_A Metallo-beta-lactamase; 31.4 31 0.0011 25.4 2.8 31 47-77 200-230 (232)
27 1hwt_C Protein (heme activator 31.0 29 0.00098 21.9 2.2 20 66-85 57-76 (81)
28 1m2x_A Class B carbapenemase B 30.0 23 0.00078 25.9 1.8 30 48-78 191-221 (223)
29 2jqq_A Conserved oligomeric go 27.9 57 0.0019 25.6 3.7 46 35-81 52-97 (204)
30 2jee_A YIIU; FTSZ, septum, coi 26.5 42 0.0014 22.7 2.5 24 62-85 15-38 (81)
31 1d66_A Protein (GAL4); protein 25.9 21 0.00073 21.4 0.8 15 66-80 51-65 (66)
32 2er8_A Regulatory protein Leu3 25.7 32 0.0011 21.2 1.7 18 67-84 49-66 (72)
33 2v4h_A NF-kappa-B essential mo 25.4 72 0.0025 22.7 3.6 14 32-45 81-94 (110)
34 1gd2_E Transcription factor PA 23.6 44 0.0015 21.8 2.0 18 66-83 28-45 (70)
35 1dh3_A Transcription factor CR 22.5 39 0.0014 20.8 1.6 17 67-83 22-38 (55)
36 1j1j_A Translin; testis/brain 22.1 2.8E+02 0.0096 21.5 7.4 53 31-83 28-91 (240)
37 1p3q_Q VPS9P, vacuolar protein 22.1 70 0.0024 19.9 2.7 25 30-54 3-27 (54)
38 2y8b_A Metallo-B-lactamase; hy 21.4 37 0.0013 25.8 1.6 32 47-78 233-264 (265)
39 1zme_C Proline utilization tra 20.1 58 0.002 19.7 2.0 15 67-81 44-58 (70)
40 1gdv_A Cytochrome C6; RED ALGA 20.0 1.5E+02 0.0051 17.6 4.7 36 38-74 46-82 (85)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.70 E-value=9.7e-18 Score=116.29 Aligned_cols=60 Identities=27% Similarity=0.453 Sum_probs=55.9
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhccCCC-CCCChHHHHHHHHHHHHHHHHHHHHhccccc
Q 032324 25 KADLSISAKERKEKLGERIIALQQLVSPY-GKTDTASVLWEAMEYIQFLHEQVKVLSAPYL 84 (143)
Q Consensus 25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~~-~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~~ 84 (143)
+..|+.+||+||++||++|.+|+.|||++ .|+|||+||.+||+||++||.+++.|+....
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~ 67 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL 67 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44699999999999999999999999986 8999999999999999999999999997654
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.67 E-value=9.1e-17 Score=109.44 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=53.4
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHhccCC-CCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324 24 HKADLSISAKERKEKLGERIIALQQLVSP-YGKTDTASVLWEAMEYIQFLHEQVKVLSA 81 (143)
Q Consensus 24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~-~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~ 81 (143)
.+..|+.+||+||++||++|.+|+.|||+ ..|+||++||+.||+||++||.++..|+-
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~ 66 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 34569999999999999999999999996 46999999999999999999999998874
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.64 E-value=2.5e-16 Score=116.01 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=51.8
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHhccCCC----CCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 032324 24 HKADLSISAKERKEKLGERIIALQQLVSPY----GKTDTASVLWEAMEYIQFLHEQVKVLSAP 82 (143)
Q Consensus 24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~----~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~ 82 (143)
.+..|+.+||+||++||++|.+|+.|||++ .|+|||+||..||+||++||.+++.|++.
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344699999999999999999999999975 47889999999999999999999999863
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.62 E-value=5.6e-17 Score=107.79 Aligned_cols=53 Identities=17% Similarity=0.297 Sum_probs=48.0
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhccCC-------CCCCChHHHHHHHHHHHHHHHHHHH
Q 032324 25 KADLSISAKERKEKLGERIIALQQLVSP-------YGKTDTASVLWEAMEYIQFLHEQVK 77 (143)
Q Consensus 25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~-------~~K~dkAsvL~eAI~YIk~Lq~qv~ 77 (143)
+..|..+||+||++||+.|.+|+.|||+ .++.+||+||+.||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4569999999999999999999999994 3677899999999999999998763
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.61 E-value=1.7e-16 Score=105.03 Aligned_cols=53 Identities=21% Similarity=0.388 Sum_probs=48.5
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHhccCCCC------CCChHHHHHHHHHHHHHHHHHH
Q 032324 24 HKADLSISAKERKEKLGERIIALQQLVSPYG------KTDTASVLWEAMEYIQFLHEQV 76 (143)
Q Consensus 24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~~------K~dkAsvL~eAI~YIk~Lq~qv 76 (143)
.+..|+.+||+||++||+.|.+|+.|||++. |+|||+||.+||+||++||.+.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3466999999999999999999999999754 7899999999999999999875
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.57 E-value=4.5e-16 Score=106.35 Aligned_cols=52 Identities=27% Similarity=0.297 Sum_probs=47.2
Q ss_pred cccccCcHHHHHHHHHHHHHHHHHHhccCCC----CCCChHHHHHHHHHHHHHHHH
Q 032324 23 RHKADLSISAKERKEKLGERIIALQQLVSPY----GKTDTASVLWEAMEYIQFLHE 74 (143)
Q Consensus 23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~----~K~dkAsvL~eAI~YIk~Lq~ 74 (143)
..+..|+.+||+||++||+.|.+|+.|||.+ .|+|||+||+.||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 3445699999999999999999999999964 799999999999999999874
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.56 E-value=3.1e-15 Score=103.21 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=54.2
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324 25 KADLSISAKERKEKLGERIIALQQLVSP--YGKTDTASVLWEAMEYIQFLHEQVKVLSAPY 83 (143)
Q Consensus 25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~ 83 (143)
+..|+..||+||+.||+.|..|+.+||. ..|++|++||..||+||++|+.+++.|+...
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999996 5899999999999999999999999987643
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=2.7e-15 Score=103.13 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=54.9
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHhccCCC--CCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324 24 HKADLSISAKERKEKLGERIIALQQLVSPY--GKTDTASVLWEAMEYIQFLHEQVKVLSAPY 83 (143)
Q Consensus 24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~~--~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~ 83 (143)
.+..|+..||+||..||+.|..|+.+||.. .|++|++||..||+||++|+.+++.|+...
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445699999999999999999999999964 799999999999999999999999998754
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=9.2e-15 Score=102.66 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=53.3
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 032324 25 KADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVKVLSAP 82 (143)
Q Consensus 25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~ 82 (143)
+..|+..||+||+.||++|..|+.+||. ..|++|++||..||+||++|+.+.+.|...
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999996 469999999999999999999999887764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.50 E-value=2.5e-14 Score=98.28 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=50.2
Q ss_pred ccccCcHHHHHHHHHHHHHHHHHHhccCC---CCCC-ChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324 24 HKADLSISAKERKEKLGERIIALQQLVSP---YGKT-DTASVLWEAMEYIQFLHEQVKVLSA 81 (143)
Q Consensus 24 ~~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~-dkAsvL~eAI~YIk~Lq~qv~~L~~ 81 (143)
.|..|+..||+||+.||++|.+|+.+||. ..|. .|++||..||+||++||+++++++.
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999994 4555 7999999999999999999999886
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=2.6e-13 Score=93.81 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=53.5
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324 25 KADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVKVLSAPY 83 (143)
Q Consensus 25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~ 83 (143)
+..|+..||.||..|+++|.+|+++||. ..|.+|++||..|++||+.|+++.+.|....
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999999999995 4788999999999999999999999888653
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.24 E-value=4e-12 Score=85.59 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=49.3
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHHHhccCC--CCCCChHHHHHHHHHHHHHHHHHH
Q 032324 22 KRHKADLSISAKERKEKLGERIIALQQLVSP--YGKTDTASVLWEAMEYIQFLHEQV 76 (143)
Q Consensus 22 k~~~~~h~~~Er~RR~kI~~~~~~L~~LVP~--~~K~dkAsvL~eAI~YIk~Lq~qv 76 (143)
+..+..|+..||.|+..||+.|..|+.+||. ..|++|+.+|..||+||.+|++.+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445569999999999999999999999995 579999999999999999999865
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.15 E-value=4.4e-11 Score=99.53 Aligned_cols=55 Identities=20% Similarity=0.342 Sum_probs=43.5
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHHHhccC-CCCCCChHHHHHHHHHHHHHHHHHH
Q 032324 22 KRHKADLSISAKERKEKLGERIIALQQLVS-PYGKTDTASVLWEAMEYIQFLHEQV 76 (143)
Q Consensus 22 k~~~~~h~~~Er~RR~kI~~~~~~L~~LVP-~~~K~dkAsvL~eAI~YIk~Lq~qv 76 (143)
+..+..|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+..-
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 444556999999999999999999999999 5779999999999999999998754
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.14 E-value=4.3e-11 Score=78.64 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=47.7
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHH
Q 032324 25 KADLSISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVK 77 (143)
Q Consensus 25 ~~~h~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~ 77 (143)
+..++.-||.|+..||+.|..|+.+||. ..|++|..+|..||+||.+|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3458889999999999999999999995 5689999999999999999998763
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.01 E-value=1.8e-10 Score=97.12 Aligned_cols=53 Identities=26% Similarity=0.266 Sum_probs=48.0
Q ss_pred cccccCcHHHHHHHHHHHHHHHHHHhccC----CCCCCChHHHHHHHHHHHHHHHHH
Q 032324 23 RHKADLSISAKERKEKLGERIIALQQLVS----PYGKTDTASVLWEAMEYIQFLHEQ 75 (143)
Q Consensus 23 ~~~~~h~~~Er~RR~kI~~~~~~L~~LVP----~~~K~dkAsvL~eAI~YIk~Lq~q 75 (143)
..+..|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 34456999999999999999999999999 678999999999999999999853
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.88 E-value=2.6e-09 Score=74.56 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHHHHHHHHHhccc
Q 032324 36 KEKLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQFLHEQVKVLSAP 82 (143)
Q Consensus 36 R~kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~ 82 (143)
|..||++|.+|..|||+ ..|.+|++||..|++||++||..++.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999995 357999999999999999999988877653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.72 E-value=3.5e-09 Score=71.43 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHH
Q 032324 29 SISAKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHE 74 (143)
Q Consensus 29 ~~~Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~ 74 (143)
+.-||.|...||+.|..|+.+||. ..|++|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 345788889999999999999994 5789999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.28 E-value=1.9e-06 Score=61.53 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhccCC---CCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324 32 AKERKEKLGERIIALQQLVSP---YGKTDTASVLWEAMEYIQFLHEQVKVLSA 81 (143)
Q Consensus 32 Er~RR~kI~~~~~~L~~LVP~---~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~ 81 (143)
|+.|=..||+.|..|+.+||. ..|+.|..+|.-||+||.+|++.++.-..
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 567777899999999999994 56899999999999999999998876443
No 19
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=61.99 E-value=4.4 Score=28.34 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCC
Q 032324 62 LWEAMEYIQFLHEQVKVLSAPYLQS 86 (143)
Q Consensus 62 L~eAI~YIk~Lq~qv~~L~~~~~~~ 86 (143)
-+.|=+||.+|.++|+.|++.|+..
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~~~~ 89 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDYLEH 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhhHHHhHHHHHHHHHhHHHHHHh
Confidence 3467799999999999999988753
No 20
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=56.18 E-value=17 Score=19.32 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032324 59 ASVLWEAMEYIQFLHEQVKV 78 (143)
Q Consensus 59 AsvL~eAI~YIk~Lq~qv~~ 78 (143)
.|-|-||-.|+..|+..++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999988764
No 21
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=53.42 E-value=21 Score=26.47 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhccCC----CCCCChHHHHHHHHHHHHHH
Q 032324 38 KLGERIIALQQLVSP----YGKTDTASVLWEAMEYIQFL 72 (143)
Q Consensus 38 kI~~~~~~L~~LVP~----~~K~dkAsvL~eAI~YIk~L 72 (143)
-|.-.|..|+++||. ..+.-|--||..|.|+++-|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 477889999999993 35677999999999998766
No 22
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=48.16 E-value=32 Score=21.58 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324 32 AKERKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPY 83 (143)
Q Consensus 32 Er~RR~kI~~~~~~L~~LVP~~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~ 83 (143)
||++|.+...++.|.+. =..-.+||..|+.+|..|+..+
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666654 1233456666666666666543
No 23
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=38.82 E-value=40 Score=18.22 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 032324 56 TDTASVLWEAMEYIQFLHE 74 (143)
Q Consensus 56 ~dkAsvL~eAI~YIk~Lq~ 74 (143)
++...+|-+|.+|+.....
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4566789999999987665
No 24
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=34.55 E-value=20 Score=26.43 Aligned_cols=30 Identities=3% Similarity=0.082 Sum_probs=22.1
Q ss_pred hccCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 032324 48 QLVSPYGKTDTASVLWEAMEYIQFLHEQVK 77 (143)
Q Consensus 48 ~LVP~~~K~dkAsvL~eAI~YIk~Lq~qv~ 77 (143)
.++|+=+..-....|.++++||+.|+++|+
T Consensus 216 ~i~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 216 IVIPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EEEESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 356653333346889999999999999885
No 25
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=32.30 E-value=84 Score=19.08 Aligned_cols=39 Identities=5% Similarity=0.080 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhccCCCCC-CChHHHHHHHHHHHHHHHHH
Q 032324 36 KEKLGERIIALQQLVSPYGK-TDTASVLWEAMEYIQFLHEQ 75 (143)
Q Consensus 36 R~kI~~~~~~L~~LVP~~~K-~dkAsvL~eAI~YIk~Lq~q 75 (143)
++.|.+.+..-...+|+... ++... +...+.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 44455544444567887654 55444 57788999988653
No 26
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=31.39 E-value=31 Score=25.39 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=22.2
Q ss_pred HhccCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 032324 47 QQLVSPYGKTDTASVLWEAMEYIQFLHEQVK 77 (143)
Q Consensus 47 ~~LVP~~~K~dkAsvL~eAI~YIk~Lq~qv~ 77 (143)
..++|+=+..-...++..+++||+.+.+++.
T Consensus 200 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 3466653333345789999999999998775
No 27
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.95 E-value=29 Score=21.85 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhcccccC
Q 032324 66 MEYIQFLHEQVKVLSAPYLQ 85 (143)
Q Consensus 66 I~YIk~Lq~qv~~L~~~~~~ 85 (143)
-.||..|+++|+.||.....
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999975543
No 28
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=29.97 E-value=23 Score=25.94 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=20.9
Q ss_pred hccCC-CCCCChHHHHHHHHHHHHHHHHHHHH
Q 032324 48 QLVSP-YGKTDTASVLWEAMEYIQFLHEQVKV 78 (143)
Q Consensus 48 ~LVP~-~~K~dkAsvL~eAI~YIk~Lq~qv~~ 78 (143)
.++|+ +... ....|..+++|++.++++|++
T Consensus 191 ~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 191 YVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp EEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred EEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 45664 3333 467899999999999998864
No 29
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=27.93 E-value=57 Score=25.64 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 032324 35 RKEKLGERIIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSA 81 (143)
Q Consensus 35 RR~kI~~~~~~L~~LVP~~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~ 81 (143)
=|.-++.=...|+.|+-.. =..+-.++.+||+|+|.|-+-+..|..
T Consensus 52 v~~Dl~~F~~QL~qL~~~~-i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKDD-ISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777775432 235778899999999999988877765
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.51 E-value=42 Score=22.68 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccccC
Q 032324 62 LWEAMEYIQFLHEQVKVLSAPYLQ 85 (143)
Q Consensus 62 L~eAI~YIk~Lq~qv~~L~~~~~~ 85 (143)
++.||+-|.-||..|.+|+..+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999987654
No 31
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=25.88 E-value=21 Score=21.44 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhc
Q 032324 66 MEYIQFLHEQVKVLS 80 (143)
Q Consensus 66 I~YIk~Lq~qv~~L~ 80 (143)
..||..|+++|+.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 579999999998876
No 32
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=25.68 E-value=32 Score=21.19 Aligned_cols=18 Identities=11% Similarity=0.109 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhccccc
Q 032324 67 EYIQFLHEQVKVLSAPYL 84 (143)
Q Consensus 67 ~YIk~Lq~qv~~L~~~~~ 84 (143)
.||..|+.+|..|+....
T Consensus 49 ~~~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888888876443
No 33
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.45 E-value=72 Score=22.74 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 032324 32 AKERKEKLGERIIA 45 (143)
Q Consensus 32 Er~RR~kI~~~~~~ 45 (143)
||.-|+|++.....
T Consensus 81 ERadREkl~~eKe~ 94 (110)
T 2v4h_A 81 ERHAREKLVEKKEY 94 (110)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhhHHHHHhHHHH
Confidence 33333333333333
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.59 E-value=44 Score=21.79 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhcccc
Q 032324 66 MEYIQFLHEQVKVLSAPY 83 (143)
Q Consensus 66 I~YIk~Lq~qv~~L~~~~ 83 (143)
-.||+.|+.+|..|+...
T Consensus 28 ~~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468888888888887643
No 35
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.52 E-value=39 Score=20.76 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcccc
Q 032324 67 EYIQFLHEQVKVLSAPY 83 (143)
Q Consensus 67 ~YIk~Lq~qv~~L~~~~ 83 (143)
.||..|+.+|..|+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN 38 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQN 38 (55)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777777777644
No 36
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=22.12 E-value=2.8e+02 Score=21.53 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHH-----------HHHHHhccCCCCCCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 032324 31 SAKERKEKLGER-----------IIALQQLVSPYGKTDTASVLWEAMEYIQFLHEQVKVLSAPY 83 (143)
Q Consensus 31 ~Er~RR~kI~~~-----------~~~L~~LVP~~~K~dkAsvL~eAI~YIk~Lq~qv~~L~~~~ 83 (143)
.+..+||+|-+- +..|+..-.+....+...++.+|-++++...++++.|....
T Consensus 28 ~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~L~~~l 91 (240)
T 1j1j_A 28 AEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 91 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667776554 33445543332334688999999999999999998887643
No 37
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=22.08 E-value=70 Score=19.90 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCC
Q 032324 30 ISAKERKEKLGERIIALQQLVSPYG 54 (143)
Q Consensus 30 ~~Er~RR~kI~~~~~~L~~LVP~~~ 54 (143)
.++|.+|..-++-+..|+.+.|...
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4678888889999999999999753
No 38
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Probab=21.37 E-value=37 Score=25.83 Aligned_cols=32 Identities=6% Similarity=0.053 Sum_probs=16.9
Q ss_pred HhccCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 032324 47 QQLVSPYGKTDTASVLWEAMEYIQFLHEQVKV 78 (143)
Q Consensus 47 ~~LVP~~~K~dkAsvL~eAI~YIk~Lq~qv~~ 78 (143)
..++|+=+..-....+..+.+|++.++++|++
T Consensus 233 ~~v~pgHg~~~~~~~~~~~~~~l~~~~~~v~~ 264 (265)
T 2y8b_A 233 EVVIPGHGLPGGLELLQHTTNVVKTHKVRPVA 264 (265)
T ss_dssp SEEEESSSCCBCTHHHHHHHHHHC--------
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 34677644433467899999999999998864
No 39
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.10 E-value=58 Score=19.72 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcc
Q 032324 67 EYIQFLHEQVKVLSA 81 (143)
Q Consensus 67 ~YIk~Lq~qv~~L~~ 81 (143)
.||..|+.+|+.|+.
T Consensus 44 ~~~~~L~~ri~~Le~ 58 (70)
T 1zme_C 44 KYLQQLQKDLNDKTE 58 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555554
No 40
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=20.05 E-value=1.5e+02 Score=17.61 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccCCCC-CCChHHHHHHHHHHHHHHHH
Q 032324 38 KLGERIIALQQLVSPYG-KTDTASVLWEAMEYIQFLHE 74 (143)
Q Consensus 38 kI~~~~~~L~~LVP~~~-K~dkAsvL~eAI~YIk~Lq~ 74 (143)
.|.+.+..-...+|+.. .++... +...+.||..|..
T Consensus 46 ~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 82 (85)
T 1gdv_A 46 AITYQVQNGKNAMPAFGGRLVDED-IEDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCCCCCCHHH-HHHHHHHHHHHhh
Confidence 33333333335688765 454444 5778899998864
Done!