BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032325
(143 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225445170|ref|XP_002284107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Vitis vinifera]
gi|225445172|ref|XP_002284110.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Vitis vinifera]
Length = 206
Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 112/127 (88%), Positives = 120/127 (94%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M+ S+EEI RLFRIR+TVMQML+DRGYFVGDFEINM+K QF++KFGENMKREDLVINKA
Sbjct: 1 MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
R DSSDQIYVFFP+EQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EIS K
Sbjct: 61 RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120
Query: 121 FHLEVFQ 127
FHLEVFQ
Sbjct: 121 FHLEVFQ 127
>gi|224119828|ref|XP_002331171.1| predicted protein [Populus trichocarpa]
gi|222873254|gb|EEF10385.1| predicted protein [Populus trichocarpa]
Length = 206
Score = 231 bits (590), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 109/127 (85%), Positives = 118/127 (92%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
MTL++EEIKRL RIR+TVMQML+DRGYFVGDFEI M++EQF +K+G NMKREDLVINK
Sbjct: 1 MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RNDSSDQIYVFFP+E KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EIS K
Sbjct: 61 RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120
Query: 121 FHLEVFQ 127
FHLEVFQ
Sbjct: 121 FHLEVFQ 127
>gi|351723363|ref|NP_001238044.1| uncharacterized protein LOC100499667 [Glycine max]
gi|255625665|gb|ACU13177.1| unknown [Glycine max]
Length = 206
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 115/127 (90%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EE+ RL+RIR+TVMQMLRDRG+ VGDFEINMSK +F +K+GE+MKREDLVINK+
Sbjct: 1 MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++S DQIYVFFPDE KVGVKTMKTYTNRM SENV+RAILV Q NLTPFARTCI EIS+K
Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120
Query: 121 FHLEVFQ 127
FHLEVFQ
Sbjct: 121 FHLEVFQ 127
>gi|351722355|ref|NP_001237497.1| uncharacterized protein LOC100306098 [Glycine max]
gi|255627545|gb|ACU14117.1| unknown [Glycine max]
Length = 206
Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 114/127 (89%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EEI RL+RIR+TVMQMLRDR + VGDFEINMSK +F +K+GE+MKREDLVINK+
Sbjct: 1 MVLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++S DQIYVFFPDE KVGVKTMKTYTNRM SENV+RAILV Q NLTPFARTCI EIS+K
Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120
Query: 121 FHLEVFQ 127
FHLEVFQ
Sbjct: 121 FHLEVFQ 127
>gi|449462431|ref|XP_004148944.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/128 (78%), Positives = 115/128 (89%), Gaps = 1/128 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EEI RLFRIR+TV QMLRDRGYFVGDFEI+M++EQF K+GENMKRED+VINK+
Sbjct: 1 MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RNDSSDQIYVFFP+E KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C+ E ++K
Sbjct: 61 RNDSSDQIYVFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATSK 120
Query: 121 -FHLEVFQ 127
FHLEVFQ
Sbjct: 121 SFHLEVFQ 128
>gi|15228724|ref|NP_188871.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
gi|13899113|gb|AAK48978.1|AF370551_1 RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|15724322|gb|AAL06554.1|AF412101_1 AT3g22320/MCB17_5 [Arabidopsis thaliana]
gi|3372233|gb|AAC28253.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|9293866|dbj|BAB01769.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|21554280|gb|AAM63355.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|25083949|gb|AAN72141.1| RNA polymerase I, II and III 24.3 kDa subunit [Arabidopsis
thaliana]
gi|332643100|gb|AEE76621.1| DNA-directed RNA polymerase II subunit E [Arabidopsis thaliana]
Length = 205
Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 114/125 (91%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
L++EE+KRL+RI++T+MQMLRDRGYF+ D E+ M+K+QFI K G+NMKREDLV KA RN
Sbjct: 2 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D+SDQ+Y+FFPDE KVGVKTMK YTNRMKSENVFRAILVVQQNLTPFARTCI EIS+KFH
Sbjct: 62 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFH 121
Query: 123 LEVFQ 127
LEVFQ
Sbjct: 122 LEVFQ 126
>gi|297835232|ref|XP_002885498.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
gi|297331338|gb|EFH61757.1| ATRPABC24.3 [Arabidopsis lyrata subsp. lyrata]
Length = 205
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/125 (76%), Positives = 113/125 (90%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
L++EEIKRL+RI++T+MQML+DRGYF+ D E+ M+K+QFI K G+NMKREDLV K RN
Sbjct: 2 LTEEEIKRLYRIQKTLMQMLKDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKVKRN 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D+SDQ+Y+FFPDE KVGVKTMK YTNRMKSENV+RAILVVQQNLTPFARTCI EIS+KFH
Sbjct: 62 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFH 121
Query: 123 LEVFQ 127
LEVFQ
Sbjct: 122 LEVFQ 126
>gi|297738790|emb|CBI28035.3| unnamed protein product [Vitis vinifera]
Length = 186
Score = 207 bits (528), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 97/107 (90%), Positives = 102/107 (95%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGV 80
ML+DRGYFVGDFEINM+K QF++KFGENMKREDLVINKA R DSSDQIYVFFP+EQKVGV
Sbjct: 1 MLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDSSDQIYVFFPEEQKVGV 60
Query: 81 KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI EIS KFHLEVFQ
Sbjct: 61 KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTKFHLEVFQ 107
>gi|449502080|ref|XP_004161536.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 208
Score = 207 bits (528), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 99/129 (76%), Positives = 115/129 (89%), Gaps = 2/129 (1%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EEI RLFRIR+TV QMLRDRGYFVGDFEI+M++EQF K+GENMKRED+VINK+
Sbjct: 1 MVLSEEEITRLFRIRKTVFQMLRDRGYFVGDFEIDMTREQFKQKYGENMKREDIVINKSK 60
Query: 61 RNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
RNDSSDQ+Y+ FFP+E KVG+K +KTYT RMKSENVFRAILVVQQNLTPFAR C+ E ++
Sbjct: 61 RNDSSDQVYICFFPEEAKVGIKPLKTYTTRMKSENVFRAILVVQQNLTPFARACMSEATS 120
Query: 120 K-FHLEVFQ 127
K FHLEVFQ
Sbjct: 121 KSFHLEVFQ 129
>gi|388506474|gb|AFK41303.1| unknown [Medicago truncatula]
Length = 206
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 109/127 (85%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S+EEI RL+RIR+TVMQML+DR Y VGDFE+NMSK F K+GENMKREDLVINK
Sbjct: 1 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
++ SDQIYVFFP+E KVGVKTMKTYTNRM SENV+RAILV Q +LTPFA+TC+ EI++K
Sbjct: 61 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASK 120
Query: 121 FHLEVFQ 127
FHLEVFQ
Sbjct: 121 FHLEVFQ 127
>gi|255546411|ref|XP_002514265.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223546721|gb|EEF48219.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 225
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/146 (69%), Positives = 116/146 (79%), Gaps = 19/146 (13%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
MTLS++EIKRLFRIRRTVMQML+DR Y V D EIN++K QF +K+G+NMKREDLVI+K+
Sbjct: 1 MTLSEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSK 60
Query: 61 RNDSSD-------------------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
R+ S QIYVFFP+EQKVGVKTMKTYTNRMKSENVFRAILV
Sbjct: 61 RDGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILV 120
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
VQQ+LTPFARTCI EI++KFHLEVFQ
Sbjct: 121 VQQSLTPFARTCIAEIASKFHLEVFQ 146
>gi|357480733|ref|XP_003610652.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355511987|gb|AES93610.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 410
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 109/127 (85%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S+EEI RL+RIR+TVMQML+DR Y VGDFE+NMSK F K+GENMKREDLVINK
Sbjct: 205 MVFSEEEITRLYRIRKTVMQMLKDRNYLVGDFELNMSKHDFKDKYGENMKREDLVINKTK 264
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
++ SDQIYVFFP+E KVGVKTMKTYTNRM SENV+RAILV Q +LTPFA+TC+ EI++K
Sbjct: 265 KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVYRAILVCQTSLTPFAKTCVSEIASK 324
Query: 121 FHLEVFQ 127
FHLEVFQ
Sbjct: 325 FHLEVFQ 331
>gi|388499936|gb|AFK38034.1| unknown [Lotus japonicus]
Length = 206
Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 108/127 (85%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M L++E+I +L RIR+TVMQMLRDR Y VGDFEINMS+ +F K+G+NMKREDL INK
Sbjct: 1 MALTEEDITKLHRIRKTVMQMLRDRNYLVGDFEINMSRHEFKTKYGDNMKREDLTINKTK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
++ SDQIYVFFPDE KVGVKTMKTYTNRM SENVFRAILV Q NLTPFA+TCI E+S+K
Sbjct: 61 KDGPSDQIYVFFPDEPKVGVKTMKTYTNRMNSENVFRAILVCQSNLTPFAKTCISEMSSK 120
Query: 121 FHLEVFQ 127
F LEVFQ
Sbjct: 121 FQLEVFQ 127
>gi|449450868|ref|XP_004143184.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524595|ref|XP_004169307.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 207
Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 109/128 (85%), Gaps = 1/128 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M +EEI +LFR+R+TV+QML+DRGYFVGDFE++MSK QF KFGENMKREDLVINK+
Sbjct: 1 MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SA 119
RN+SSDQIYVFFP+E KVG+K ++TY RMKSENVFRAI VVQ NLTPFAR I E+ S+
Sbjct: 61 RNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSS 120
Query: 120 KFHLEVFQ 127
K HLEVFQ
Sbjct: 121 KLHLEVFQ 128
>gi|116785870|gb|ABK23892.1| unknown [Picea sitchensis]
Length = 191
Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 90/123 (73%), Positives = 103/123 (83%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
DE+ +LFRIRRTV+QML DR Y VGDFEIN +KEQF+ KFGE+ K+EDLVINKA RN
Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
S+QI+VFFP+E KVGVK++KTY RMKSE VFRAILVVQQ LTPFAR +QE S KFHLE
Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQALTPFARQSVQEFSGKFHLE 123
Query: 125 VFQ 127
VFQ
Sbjct: 124 VFQ 126
>gi|449455411|ref|XP_004145446.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449487698|ref|XP_004157756.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 205
Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 110/127 (86%), Gaps = 1/127 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EEI +LFR R+TV+QMLRDRG+ VGDFE+ MS+EQF ++GE MK+EDLVINK++
Sbjct: 1 MVLSEEEITKLFRARKTVLQMLRDRGFVVGDFELAMSREQFKNQYGETMKKEDLVINKSM 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RN+SSDQIYVFFP+E KV VKT++TY NRMKS+NVFRAILVVQ+ L+ FAR+ I E + K
Sbjct: 61 RNNSSDQIYVFFPEEPKVSVKTVRTYINRMKSDNVFRAILVVQEKLSSFARSSICE-APK 119
Query: 121 FHLEVFQ 127
FHLEVFQ
Sbjct: 120 FHLEVFQ 126
>gi|192910670|gb|ACF06443.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Elaeis
guineensis]
Length = 204
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/125 (69%), Positives = 103/125 (82%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+S+++I RLFRIRRTVMQMLRDRGY V D EINM+K QF+ KFGE +KREDLVINKA +N
Sbjct: 1 MSEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKN 60
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D +DQIYVFFP++ KVGVK +K Y RMK+ENV R ILVVQQ LTPFAR + E+S K+
Sbjct: 61 DPADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYM 120
Query: 123 LEVFQ 127
LEVFQ
Sbjct: 121 LEVFQ 125
>gi|168011548|ref|XP_001758465.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690500|gb|EDQ76867.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 104/123 (84%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
DE+ RL+RIR+TVM+MLRDR Y V D+E+ +SKEQF K+G+ KREDLVI K R+++
Sbjct: 7 DEQSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNN 66
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
++ I+VFFP+E KVGVKT+KTY +RMK+ENV RAILVVQQNLTPFAR C+ E+++K+HLE
Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMASKYHLE 126
Query: 125 VFQ 127
VFQ
Sbjct: 127 VFQ 129
>gi|168003716|ref|XP_001754558.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694179|gb|EDQ80528.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 104/123 (84%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
DE+ RL+RIR+TVM+MLRDR Y V +FE+N +KE+F K+G+ KREDLVI K R+++
Sbjct: 7 DEQCARLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNN 66
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
++ I+VFFP+E KVGVKT+KTY +RMK+ENV RAILVVQQNLTPFAR C+ E+S+K+H+E
Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVE 126
Query: 125 VFQ 127
VFQ
Sbjct: 127 VFQ 129
>gi|302795809|ref|XP_002979667.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
gi|302807361|ref|XP_002985375.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300146838|gb|EFJ13505.1| hypothetical protein SELMODRAFT_181697 [Selaginella moellendorffii]
gi|300152427|gb|EFJ19069.1| hypothetical protein SELMODRAFT_228648 [Selaginella moellendorffii]
Length = 206
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 103/127 (81%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M D+ RL+RIRRT+MQMLRDR Y V D+E++++KEQF KFG+ KR+DLVI+KA
Sbjct: 1 MAQLDDSTNRLYRIRRTIMQMLRDRDYLVADYEVSLTKEQFRDKFGDEPKRDDLVISKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
R+D SDQI+VFFP+E KVGVKT+KTY RMKSE VFRAI+VVQ +LTPFA+ C+ E++ K
Sbjct: 61 RSDQSDQIFVFFPEEPKVGVKTIKTYAERMKSELVFRAIMVVQTSLTPFAKQCLSEMAPK 120
Query: 121 FHLEVFQ 127
+ +EVFQ
Sbjct: 121 YQIEVFQ 127
>gi|357482711|ref|XP_003611642.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512977|gb|AES94600.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 331
Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 102/125 (81%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
S++EI +L+RIR+TVM+MLRDR Y VGDFE+NMSKE+F K+GE+M REDLVINKA ++
Sbjct: 128 FSEDEISKLYRIRKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAKKD 187
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ SDQIYVFFP+++KVGV T +TYT RM SENV+RAI+V Q +LT A I + +KFH
Sbjct: 188 NPSDQIYVFFPEDEKVGVHTFRTYTKRMNSENVYRAIIVCQTSLTNMAWNSISQFDSKFH 247
Query: 123 LEVFQ 127
LEVFQ
Sbjct: 248 LEVFQ 252
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/128 (60%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S++EI +L+RIR+ VM+MLRDR Y VGDFE+ MSK++F +GEN+KREDLVI KA
Sbjct: 1 MVFSEDEISKLYRIRKKVMEMLRDRNYLVGDFEVCMSKQEFKETYGENLKREDLVIKKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++ SDQIYVFFP+ KV V T++TYTNRM S+NV+RAI+V Q +LT AR EI++K
Sbjct: 61 KDNPSDQIYVFFPENDKVDVHTLRTYTNRMSSDNVYRAIVVCQTSLTKAARD-FSEIASK 119
Query: 121 FHLEVFQV 128
FHLEVF V
Sbjct: 120 FHLEVFHV 127
>gi|357482707|ref|XP_003611640.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355512975|gb|AES94598.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 229
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 103/127 (81%), Gaps = 3/127 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S++EI +L+RIR+TVM+MLRDR Y VGDFE+NMSKE+F K+GE+M REDLVINKA
Sbjct: 1 MVFSEDEISKLYRIRKTVMEMLRDRNYLVGDFEVNMSKEEFKEKYGEHMNREDLVINKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++ SDQIYVFFP+++KVGV T +T T RM SENV+RAI+V Q +LT A + EI +K
Sbjct: 61 KDNPSDQIYVFFPEDEKVGVHTFRTCTKRMNSENVYRAIIVCQTSLTNMA---LSEIDSK 117
Query: 121 FHLEVFQ 127
FHLEVFQ
Sbjct: 118 FHLEVFQ 124
>gi|148910132|gb|ABR18148.1| unknown [Picea sitchensis]
Length = 194
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/123 (67%), Positives = 95/123 (77%), Gaps = 11/123 (8%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
DE+ +LFRIRRTV+QML DR Y VGDFEIN +KEQF+ KFGE+ K+EDLVINKA RN
Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
S+QI+VFFP+E KVGVK++KTY RMKSE VFRAILVVQ QE S KFHLE
Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQ-----------QEFSGKFHLE 112
Query: 125 VFQ 127
VFQ
Sbjct: 113 VFQ 115
>gi|115440569|ref|NP_001044564.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|55296830|dbj|BAD68174.1| putative DNA-directed RNA polymerase II 23K chain [Oryza sativa
Japonica Group]
gi|113534095|dbj|BAF06478.1| Os01g0805800 [Oryza sativa Japonica Group]
gi|215737136|dbj|BAG96065.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765546|dbj|BAG87243.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189238|gb|EEC71665.1| hypothetical protein OsI_04128 [Oryza sativa Indica Group]
Length = 210
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 94/120 (78%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL RIRRTVMQMLRDRGY V + E+ M + F+ K+GE+ REDL+INK +ND SDQ
Sbjct: 12 VGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQ 71
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
IYVFFP++ KVG+K +K Y MK+ENV RA+LV+QQNLTPFAR+ +QE+ K HLE+FQ
Sbjct: 72 IYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQ 131
>gi|222619416|gb|EEE55548.1| hypothetical protein OsJ_03801 [Oryza sativa Japonica Group]
Length = 210
Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 94/120 (78%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL RIRRTVMQMLRDRGY V + E+ M + F+ K+GE+ REDL+INK +ND SDQ
Sbjct: 12 VGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQ 71
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
IYVFFP++ KVG+K +K Y MK+ENV RA+LV+QQNLTPFAR+ +QE+ K HLE+FQ
Sbjct: 72 IYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQ 131
>gi|38344231|emb|CAD41325.2| OJ991113_30.8 [Oryza sativa Japonica Group]
Length = 205
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 97/124 (78%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+EE RLFRIRRTVMQMLRDRGY V + +I++ + F+A+FG+ + R+ LV ++ +++
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
+DQIYVFFP + K GVKT+++Y RMK E+VF ILVVQQ L+ FAR+ +QE+S KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 124 EVFQ 127
EVFQ
Sbjct: 123 EVFQ 126
>gi|215713497|dbj|BAG94634.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 167
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 97/124 (78%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+EE RLFRIRRTVMQMLRDRGY V + +I++ + F+A+FG+ + R+ LV ++ +++
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
+DQIYVFFP + K GVKT+++Y RMK E+VF ILVVQQ L+ FAR+ +QE+S KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 124 EVFQ 127
EVFQ
Sbjct: 123 EVFQ 126
>gi|125548794|gb|EAY94616.1| hypothetical protein OsI_16393 [Oryza sativa Indica Group]
gi|125590811|gb|EAZ31161.1| hypothetical protein OsJ_15260 [Oryza sativa Japonica Group]
Length = 217
Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 97/124 (78%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+EE RLFRIRRTVMQMLRDRGY V + +I++ + F+A+FG+ + R+ LV ++ +++
Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
+DQIYVFFP + K GVKT+++Y RMK E+VF ILVVQQ L+ FAR+ +QE+S KFHL
Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122
Query: 124 EVFQ 127
EVFQ
Sbjct: 123 EVFQ 126
>gi|226530454|ref|NP_001141164.1| uncharacterized protein LOC100273250 [Zea mays]
gi|226533456|ref|NP_001152590.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|194703030|gb|ACF85599.1| unknown [Zea mays]
gi|195657875|gb|ACG48405.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Zea mays]
gi|413952167|gb|AFW84816.1| DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 210
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 96/126 (76%), Gaps = 1/126 (0%)
Query: 3 LSDEE-IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
++DE + RL+RIRRTVMQMLRDRGY V D E+ S+ F+ KFGE+ REDL+INK +
Sbjct: 6 VTDEATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKK 65
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
ND SDQIYVFFP++ KVG+K +K Y M ENV RA+LV+QQNLTPFA++ + E+ K
Sbjct: 66 NDPSDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKI 125
Query: 122 HLEVFQ 127
HLE+FQ
Sbjct: 126 HLEIFQ 131
>gi|413952168|gb|AFW84817.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 238
Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 92/120 (76%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL+RIRRTVMQMLRDRGY V D E+ S+ F+ KFGE+ REDL+INK +ND SDQ
Sbjct: 12 VGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQ 71
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
IYVFFP++ KVG+K +K Y M ENV RA+LV+QQNLTPFA++ + E+ K HLE+FQ
Sbjct: 72 IYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQ 131
>gi|346470667|gb|AEO35178.1| hypothetical protein [Amblyomma maculatum]
Length = 205
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 96/123 (78%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
+++I RLFRIRRTVM+MLRDR Y V D+E+NM+K F+ KFGE +KR+DL INK + D
Sbjct: 3 DEQQISRLFRIRRTVMEMLRDRNYLVVDYELNMTKLDFLHKFGEGVKRDDLTINKYKKGD 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
SDQIYVFFP++ KVG+K +K MK+ENV R+ILVVQQNLTPFA+ + E++ KF L
Sbjct: 63 PSDQIYVFFPNDDKVGMKHIKKCVELMKTENVTRSILVVQQNLTPFAKAHLLELTPKFIL 122
Query: 124 EVF 126
EVF
Sbjct: 123 EVF 125
>gi|212722800|ref|NP_001132429.1| hypothetical protein [Zea mays]
gi|194694360|gb|ACF81264.1| unknown [Zea mays]
gi|414586666|tpg|DAA37237.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 206
Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 94/127 (74%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M D+EI RLFRIRRTV +MLRDRGY V D +I + + +FI ++G ++R++L N
Sbjct: 1 MASPDDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
N SDQIYVFFP+E K GVKT++ Y +MK+ENVF ILVVQQ L+ FAR+ +QE+S K
Sbjct: 61 LNGPSDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQK 120
Query: 121 FHLEVFQ 127
+HLEVFQ
Sbjct: 121 YHLEVFQ 127
>gi|326492457|dbj|BAK02012.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326504136|dbj|BAK02854.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511589|dbj|BAJ91939.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 94/127 (74%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
+ D + RL RIRRTVM MLRDRGY V + E++M++ F K+GE RED++INK
Sbjct: 5 LVTEDVTVGRLVRIRRTVMHMLRDRGYLVVEHELSMTRRDFQRKYGETFHREDMLINKCK 64
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+ND +DQIYVFFP+++KVG+K +K Y M +E V RAILVVQQNLTPFA++ +QE+ K
Sbjct: 65 KNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAILVVQQNLTPFAKSFLQELEPK 124
Query: 121 FHLEVFQ 127
HLEVFQ
Sbjct: 125 IHLEVFQ 131
>gi|357125497|ref|XP_003564430.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 210
Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 93/127 (73%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
+ D + RL RIR TVM MLRDRGY V + E+ M++ F K+GE+ REDL+INK
Sbjct: 5 LVTDDAGVGRLVRIRSTVMHMLRDRGYLVVEHELAMTRRDFERKYGESFHREDLLINKCK 64
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+ND +DQIYVFFP+++KVG+K +K Y M +E V RA++VVQQNLTPFA++ +QE+ K
Sbjct: 65 KNDPNDQIYVFFPNDEKVGMKHIKKYVEMMNAEKVSRAVVVVQQNLTPFAKSFLQELEPK 124
Query: 121 FHLEVFQ 127
HLEVFQ
Sbjct: 125 IHLEVFQ 131
>gi|414586665|tpg|DAA37236.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 203
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 91/124 (73%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M D+EI RLFRIRRTV +MLRDRGY V D +I + + +FI ++G ++R++L N
Sbjct: 1 MASPDDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
N SDQIYVFFP+E K GVKT++ Y +MK+ENVF ILVVQQ L+ FAR+ +QE+S K
Sbjct: 61 LNGPSDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQK 120
Query: 121 FHLE 124
+HLE
Sbjct: 121 YHLE 124
>gi|297830274|ref|XP_002883019.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
gi|297328859|gb|EFH59278.1| hypothetical protein ARALYDRAFT_341806 [Arabidopsis lyrata subsp.
lyrata]
Length = 211
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 99/130 (76%), Gaps = 4/130 (3%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M L+DEEIK+LF ++RT+MQML+DRGY + D EI M+ +FI K+GENMKR+ LV KA
Sbjct: 1 MALTDEEIKQLFLVQRTLMQMLKDRGYSIEDSEITMTLGEFIEKYGENMKRKALVTLKAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA- 119
+ND +D++Y+FFP++ KVGV MK Y NR+KSENVFRAIL V+Q++ F+R I A
Sbjct: 61 KNDDNDKLYIFFPNKAKVGVADMKKYINRLKSENVFRAIL-VKQDIKEFSRHAQLSIGAA 119
Query: 120 --KFHLEVFQ 127
KF++EVFQ
Sbjct: 120 YPKFNIEVFQ 129
>gi|326503328|dbj|BAJ99289.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 96/128 (75%), Gaps = 1/128 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M ++ E RLFR+RRTVMQMLRDRGY V D +++++ +F+ ++G+ ++R+DLVIN+A
Sbjct: 1 MAATEGETSRLFRVRRTVMQMLRDRGYLVVDADVDLTMGEFVGRYGDPVRRDDLVINRAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS-A 119
+++ +QIY+FFP+E K GVKT+K+Y +MK ENV+ ILVVQQ LT F+R + +S
Sbjct: 61 KDNPDEQIYIFFPNEPKPGVKTVKSYAEKMKQENVYNGILVVQQALTAFSRNLLLGLSQE 120
Query: 120 KFHLEVFQ 127
K LEVFQ
Sbjct: 121 KLQLEVFQ 128
>gi|357164319|ref|XP_003580017.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 205
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 92/124 (74%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ + RLFRIRRTVM+MLRDRGY V D +I +S +FI ++G+ ++REDLVIN+ +++
Sbjct: 3 SEGQTSRLFRIRRTVMEMLRDRGYLVVDADIELSMREFIDRYGDPVRREDLVINRVKKDN 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
++QIYVFFP E K GVKT++ Y ++MK ENV I+V +Q L+ FAR +Q+ S F L
Sbjct: 63 PNEQIYVFFPSEAKPGVKTVRGYADKMKQENVTNGIIVAEQALSAFARNVLQDNSKSFFL 122
Query: 124 EVFQ 127
EVFQ
Sbjct: 123 EVFQ 126
>gi|326501686|dbj|BAK02632.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 207
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/128 (50%), Positives = 91/128 (71%), Gaps = 1/128 (0%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M ++ E RLFR+RRTVMQMLRDRGY V D +++M+ +F+ ++G+ ++R+DLVIN+A
Sbjct: 1 MAEAEGETSRLFRVRRTVMQMLRDRGYLVVDADVDMTMGEFVGRYGDPVRRDDLVINRAK 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA- 119
+++ +QIYVFFP+E K G K +K+Y +M ENV ILVVQQ LT FAR + S
Sbjct: 61 KDNPDEQIYVFFPNEPKPGQKAVKSYVEKMTQENVRNGILVVQQALTSFARNNLLGNSPD 120
Query: 120 KFHLEVFQ 127
K ++VFQ
Sbjct: 121 KLQVQVFQ 128
>gi|159479030|ref|XP_001697601.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158274211|gb|EDO99994.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 206
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 86/121 (71%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+ + RL+R+RRT +QML DRGY V EI +K+QF +FGEN +++DL I ++D +
Sbjct: 2 DNLTRLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPT 61
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+QI+VFFP+EQKVGVKT+K RMK E V RAI+V TPFA++ ++++ K+H+E
Sbjct: 62 EQIFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEH 121
Query: 126 F 126
F
Sbjct: 122 F 122
>gi|255085448|ref|XP_002505155.1| predicted protein [Micromonas sp. RCC299]
gi|226520424|gb|ACO66413.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 86/123 (69%), Gaps = 1/123 (0%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+ RLFRIR+TV +ML RGY V E++ K+ F +FGE+ +R+ L + LR D +
Sbjct: 3 EKKTRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPT 62
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA-KFHLE 124
I+VFFPDE+KVGVKT+K Y RMK E V RAI+VVQQ+LTPFAR + E A KF++E
Sbjct: 63 QHIFVFFPDEEKVGVKTIKEYAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYIE 122
Query: 125 VFQ 127
FQ
Sbjct: 123 QFQ 125
>gi|384249623|gb|EIE23104.1| DNA-directed RNA polymerase II, 23 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 202
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 94/130 (72%), Gaps = 2/130 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+ + RL+RIR+T ++ML DRGY + + M+KE F +FG++ +++DL + ++D +
Sbjct: 2 DNMTRLYRIRKTCLEMLHDRGYLIAQDDRQMTKEGFKDRFGDDPRKDDLTVLAPKQDDPT 61
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+QI+VF+P+E KVGVKT+KT+ RM++E V RAI+V ++TPFA+ C+ E++ K+++EV
Sbjct: 62 EQIFVFYPEEDKVGVKTIKTFAERMRNEGVSRAIMVTMASMTPFAKQCLAEMAPKYYIEV 121
Query: 126 FQVNVFSLMI 135
F N L+I
Sbjct: 122 F--NAAELLI 129
>gi|308803436|ref|XP_003079031.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
gi|116057485|emb|CAL51912.1| RNA polymerase I, II and III 24.3 kDa subunit (ISS) [Ostreococcus
tauri]
Length = 1124
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 62/126 (49%), Positives = 85/126 (67%), Gaps = 1/126 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+S + RLFR+R+T+ +ML RGY V E+ + F +FGE KR+ L I ++
Sbjct: 920 MSSDRRNRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKD 979
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SAKF 121
D S+ I+VFFPDE+KVGVKT+K RMK ENVFRAI+VVQ +LTPFA+ + E + KF
Sbjct: 980 DPSENIFVFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVVQASLTPFAKQSLLECQTQKF 1039
Query: 122 HLEVFQ 127
++E FQ
Sbjct: 1040 YIEQFQ 1045
>gi|449019061|dbj|BAM82463.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 211
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 87/127 (68%), Gaps = 7/127 (5%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFV----GDFEINMSKEQFIAKF-GENMKREDLVINKAL 60
+E +RL RIRRT+++MLRDRGY V D E+ + E+F KF RE L + +
Sbjct: 8 DETRRLHRIRRTILEMLRDRGYLVLPTKTDLELPL--EEFAHKFDAAGRARESLTMLRQH 65
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RND S+QIYVFFP E+KVGVK ++ Y R+++ENV RAI+VVQ LTP A+ + E+ +
Sbjct: 66 RNDRSNQIYVFFPKEEKVGVKPIREYCLRLETENVLRAIIVVQTGLTPIAKQAVAELQPR 125
Query: 121 FHLEVFQ 127
FHLE+FQ
Sbjct: 126 FHLELFQ 132
>gi|357497659|ref|XP_003619118.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355494133|gb|AES75336.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 205
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 83/112 (74%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M LS+EE+ +L+RIRRTV QMLRDR Y V D E+NMSK++ AKFGENM R+DL I
Sbjct: 1 MGLSEEEVTKLYRIRRTVFQMLRDRNYRVLDSEVNMSKQELKAKFGENMNRKDLTIQTTN 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFART 112
++D SD+IYVFF D+ K+GV T+KT + + +E V+RAI+VVQ L AR+
Sbjct: 61 KDDPSDKIYVFFRDDAKLGVSTIKTIKDLILTEGVYRAIIVVQNELKSKARS 112
>gi|302854284|ref|XP_002958651.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
gi|300255976|gb|EFJ40254.1| hypothetical protein VOLCADRAFT_109457 [Volvox carteri f.
nagariensis]
Length = 202
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 86/121 (71%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+ + RL+R+RRT +QML DRGY V EIN SK+QF +FGEN +++DL I ++D +
Sbjct: 2 DNLTRLWRVRRTCLQMLNDRGYLVSQEEINTSKDQFRDRFGENPRKDDLTILVPKQDDPT 61
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+Q++VFFP+EQKVGVKT+K RMK E V RAI+V TPFA++ ++++ K+ +E
Sbjct: 62 EQMFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTAVKFTPFAKSALEDMRPKYCIEH 121
Query: 126 F 126
F
Sbjct: 122 F 122
>gi|145346274|ref|XP_001417617.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577844|gb|ABO95910.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 205
Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+S+++ RLFR+R+T+ +ML RGY V E+ + F FGE KRE L I R+
Sbjct: 1 MSNDKRTRLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRD 60
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SAKF 121
D S+ I+VFFPDE+KVGVKT+K RMK ENVFRAI+VVQ +LTPFA+ + E + KF
Sbjct: 61 DPSENIFVFFPDEEKVGVKTIKDLAKRMKDENVFRAIIVVQASLTPFAKQSLLECQTQKF 120
Query: 122 HLEVFQ 127
++E FQ
Sbjct: 121 YIEQFQ 126
>gi|307106700|gb|EFN54945.1| hypothetical protein CHLNCDRAFT_134695 [Chlorella variabilis]
Length = 190
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 87/117 (74%), Gaps = 6/117 (5%)
Query: 11 LFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYV 70
+FRIR+T ++ML DRGY + + E + +++QF K+G +++REDL +D ++QI+V
Sbjct: 1 MFRIRKTCLEMLADRGYLITEEERDATRDQFTDKYGPDIRREDLT------DDPTEQIFV 54
Query: 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
FFP+E KVGVKT+K RM++E V RA++V Q N+TPFA+ C+ E++ K+++E+FQ
Sbjct: 55 FFPEEAKVGVKTIKLLAERMRNEGVQRAVMVTQANMTPFAKQCLSEMAPKYYIELFQ 111
>gi|348680008|gb|EGZ19824.1| hypothetical protein PHYSODRAFT_494802 [Phytophthora sojae]
Length = 206
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 86/121 (71%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RL+R+R+T ++ML +RGY V + E+ M+ E F A+FG+N RE + I +D SD
Sbjct: 7 EASRLYRVRKTTVKMLHNRGYIVSENELVMTPEAFQAQFGDNPTREMMTILVEKIDDPSD 66
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++VFFP++ KVGVK ++ Y NRMK ENV +AILVVQ+ +TPFAR + E++ ++ +E F
Sbjct: 67 NLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYKIEHF 126
Query: 127 Q 127
+
Sbjct: 127 K 127
>gi|303282333|ref|XP_003060458.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457929|gb|EEH55227.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 206
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S E++ +LFRI +TV +ML RGY V E+ K+ F +G++ KRE L + R+D
Sbjct: 3 SSEKVTKLFRIHKTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDD 62
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK-FH 122
S+ I+VFFP+E+KVGVKT+K Y RMK E+VFRAI+VVQ +LTPFA+ + E +++ F+
Sbjct: 63 PSENIFVFFPEEEKVGVKTIKEYAKRMKDESVFRAIIVVQASLTPFAKQSLLECASQSFY 122
Query: 123 LEVFQ 127
+E FQ
Sbjct: 123 IEQFQ 127
>gi|198427419|ref|XP_002130595.1| PREDICTED: similar to 25-kDa subunit RNA polymerase [Ciona
intestinalis]
Length = 210
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 90/130 (69%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E RL+RIR+TVMQ+ DRGY V E++ S E+F +FG+ R+DL I
Sbjct: 1 MDDEAETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E KVGVKT+KTY RM+ EN+ RAI+VVQQ++TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKVGVKTIKTYCQRMQEENIQRAIIVVQQSMTPSAKQSLFD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|242017042|ref|XP_002429002.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212513848|gb|EEB16264.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 210
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 89/130 (68%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPD+ K+G+KT+KTY RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDDPKIGIKTIKTYCQRMQEENIHRAIIVVQQGMTPSAKQSLSD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|442755873|gb|JAA70096.1| Putative rna polymerase 25-kda subunit common to polymerases i ii
and iii [Ixodes ricinus]
Length = 210
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 90/130 (69%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ +++QF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTQDQFKQQFGDKPSERRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEHF 130
>gi|357500691|ref|XP_003620634.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495649|gb|AES76852.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 208
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 89/128 (69%), Gaps = 2/128 (1%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M S+E+I +LFRI++T++QML DR Y V + E+ MS+E FI K+GE+MKRE L INK
Sbjct: 1 MVFSEEDITKLFRIQKTLLQMLSDRNYLVEETELTMSREDFIFKYGEHMKREQLEINKTH 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA- 119
RN+ S++I VFF D+ K+GVK ++ + RM ENV ILV Q L+ +AR+ + E+S+
Sbjct: 61 RNNPSEKICVFFSDDAKLGVKIVRGFITRMLQENVDSGILVCQTKLSHYARSAVTEMSSV 120
Query: 120 -KFHLEVF 126
LEVF
Sbjct: 121 GSKRLEVF 128
>gi|31235339|ref|XP_319221.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|157128329|ref|XP_001661404.1| DNA-directed RNA polymerase II [Aedes aegypti]
gi|170059825|ref|XP_001865530.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
gi|30174740|gb|EAA43596.1| AGAP010064-PA [Anopheles gambiae str. PEST]
gi|108872649|gb|EAT36874.1| AAEL011087-PA [Aedes aegypti]
gi|167878475|gb|EDS41858.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Culex
quinquefasciatus]
Length = 210
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 86/127 (67%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
D E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++ A
Sbjct: 4 DAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVF 126
K+ LE F
Sbjct: 124 KYILEQF 130
>gi|323449166|gb|EGB05056.1| hypothetical protein AURANDRAFT_31430 [Aureococcus anophagefferens]
Length = 204
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 86/137 (62%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E LFRIRRT+++ML+ R Y V ++ MS E F +FGE KR DL I D+ D
Sbjct: 5 EASHLFRIRRTLLKMLKKRNYVVDVAQLEMSSEAFQEQFGEQPKRTDLTILAEHETDAED 64
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
Q+++F PDE+KVGVKT+K Y MK +V AILVV+ +TPFA+T +QE+++ + +E F
Sbjct: 65 QVFIFLPDEEKVGVKTIKQYCEMMKEASVSHAILVVKAGITPFAKTALQEMASMYLIEHF 124
Query: 127 QVNVFSLMIYTCKLFNC 143
+ N + I KL
Sbjct: 125 RDNELLVDITEHKLVPA 141
>gi|452822190|gb|EME29212.1| DNA-directed RNA polymerase II subunit E [Galdieria sulphuraria]
Length = 212
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 93/125 (74%), Gaps = 3/125 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFV--GDFEINMSKEQFIAKFGE-NMKREDLVINKALR 61
++E+ +LFRIR+T+++MLRDRGY V ++ M++E+F ++ + N RE L + K +
Sbjct: 8 EQEVTKLFRIRKTILEMLRDRGYVVLETSSDLEMTREEFGSRLQQANYSRESLTLLKQHQ 67
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D SDQIYVFFP E++V VKT++ Y RM E V++AILVV ++L+PFA+ IQ+++++F
Sbjct: 68 HDPSDQIYVFFPAEERVSVKTLRDYFVRMDQERVYKAILVVIKSLSPFAKQGIQKVASQF 127
Query: 122 HLEVF 126
+EVF
Sbjct: 128 KVEVF 132
>gi|325181796|emb|CCA16252.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 210
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
LS E + RLFR+R+T ++ML +RGY V + E+ M+ E F +FG+N RE + I +
Sbjct: 8 LSAEAL-RLFRVRKTTVKMLHNRGYIVSENELIMTPEGFQQQFGDNPTREMMTILVEKID 66
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D SD ++VFFP++ KVGVK ++ Y NRMK ENV +AILVVQ+ +TPFAR + E++ ++
Sbjct: 67 DPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYK 126
Query: 123 LEVFQ 127
+E F+
Sbjct: 127 IEHFK 131
>gi|322797006|gb|EFZ19320.1| hypothetical protein SINV_02648 [Solenopsis invicta]
Length = 211
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 87/131 (66%), Gaps = 5/131 (3%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
M ++E +L+RIR+TVMQ+ DRGY V E++ EQF +FG+ R DL+
Sbjct: 1 MADDEDETYKLWRIRKTVMQLCHDRGYLVTQDELDQDLEQFKEQFGDKPSEKKPARSDLI 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
+ A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ +
Sbjct: 61 VLVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLV 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYILEQF 131
>gi|149287100|gb|ABR23449.1| 25-kDa subunit RNA polymerase [Ornithodoros parkeri]
Length = 210
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 89/130 (68%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + +QF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALTD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEYF 130
>gi|443703356|gb|ELU00950.1| hypothetical protein CAPTEDRAFT_226435 [Capitella teleta]
Length = 210
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINK 58
D+EI +L+RIR+TVMQ+ DRGY V E++ + +QF +FG+ R DL++
Sbjct: 3 DDQEIYKLWRIRKTVMQLCHDRGYLVTQDELDQTIDQFKDQFGDKPSERRPARSDLIVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D DQ++VFFPDE KVG+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPIDQMFVFFPDEPKVGIKTIKTYCQRMQEENISRAIIVVQAGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|66543279|ref|XP_623541.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
Length = 179
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 88/130 (67%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|48124579|ref|XP_396561.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis mellifera]
gi|340724888|ref|XP_003400810.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus terrestris]
gi|380012055|ref|XP_003690105.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Apis florea]
Length = 210
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 88/130 (67%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|350422012|ref|XP_003493028.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Bombus impatiens]
Length = 210
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 88/130 (67%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|383865249|ref|XP_003708087.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Megachile rotundata]
Length = 210
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 88/130 (67%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|357609342|gb|EHJ66401.1| hypothetical protein KGM_04074 [Danaus plexippus]
Length = 210
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINK 58
D E +L+RIR+TVMQ+ DRGY V E++ + +QF +FG+ R DL++
Sbjct: 3 DDAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLDQFKEQFGDKPSDKRPARSDLIVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEHF 130
>gi|149034611|gb|EDL89348.1| rCG29511, isoform CRA_d [Rattus norvegicus]
Length = 242
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 88/127 (69%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVF 126
K+ LE F
Sbjct: 124 KYVLEQF 130
>gi|321475403|gb|EFX86366.1| hypothetical protein DAPPUDRAFT_308488 [Daphnia pulex]
Length = 210
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 88/130 (67%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E R++R+R+T+MQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDESETYRMWRVRKTIMQLCHDRGYLVTQDELDQTLEQFKIQFGDKPSERKPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQSGMTPSAKQSLTD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEYF 130
>gi|20071300|gb|AAH26842.1| Polr2e protein [Mus musculus]
Length = 162
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYVLEQF 130
>gi|301106302|ref|XP_002902234.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
gi|262098854|gb|EEY56906.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Phytophthora infestans T30-4]
Length = 206
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 84/121 (69%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RL+R+R+T ++ML +R Y V + E+ M+ E F +FG+N RE + I +D SD
Sbjct: 7 EASRLYRVRKTTVKMLHNRSYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKIDDPSD 66
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++VFFP++ KVGVK ++ Y NRMK ENV +AILVVQ+ +TPFAR + E++ ++ +E F
Sbjct: 67 NLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPRYKIEHF 126
Query: 127 Q 127
+
Sbjct: 127 K 127
>gi|148699662|gb|EDL31609.1| mCG13422, isoform CRA_b [Mus musculus]
Length = 165
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 6 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 65
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 66 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 125
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 126 PKYVLEQF 133
>gi|410949981|ref|XP_003981695.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Felis catus]
Length = 212
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYVLEQF 130
>gi|312383157|gb|EFR28348.1| hypothetical protein AND_03878 [Anopheles darlingi]
Length = 210
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 86/127 (67%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
D E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++ A
Sbjct: 4 DAETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVF 126
K+ LE F
Sbjct: 124 KYILEQF 130
>gi|149034610|gb|EDL89347.1| rCG29511, isoform CRA_c [Rattus norvegicus]
Length = 146
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYVLEQF 130
>gi|410342181|gb|JAA40037.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342183|gb|JAA40038.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410342185|gb|JAA40039.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
Length = 217
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|345786834|ref|XP_854641.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Canis lupus familiaris]
Length = 210
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|124249077|ref|NP_079830.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Mus
musculus]
gi|157819761|ref|NP_001103084.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rattus
norvegicus]
gi|54036414|sp|Q80UW8.1|RPAB1_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|182676546|sp|B0BNE2.1|RPAB1_RAT RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|28374319|gb|AAH45521.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|74194812|dbj|BAE25998.1| unnamed protein product [Mus musculus]
gi|74198334|dbj|BAE43245.1| unnamed protein product [Mus musculus]
gi|74205025|dbj|BAE20985.1| unnamed protein product [Mus musculus]
gi|74208142|dbj|BAE26292.1| unnamed protein product [Mus musculus]
gi|148699661|gb|EDL31608.1| mCG13422, isoform CRA_a [Mus musculus]
gi|149034612|gb|EDL89349.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034613|gb|EDL89350.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|149034614|gb|EDL89351.1| rCG29511, isoform CRA_e [Rattus norvegicus]
gi|165971683|gb|AAI58788.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Rattus
norvegicus]
Length = 210
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYVLEQF 130
>gi|355712729|gb|AES04446.1| polymerase II polypeptide E, 25kDa [Mustela putorius furo]
Length = 209
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYVLEQF 130
>gi|119589953|gb|EAW69547.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_a [Homo sapiens]
Length = 211
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|355702921|gb|EHH29412.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
Length = 210
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|417408698|gb|JAA50889.1| Putative dna-directed rna polymerases i ii and iii subunit
rpabc1-like isoform 2, partial [Desmodus rotundus]
Length = 212
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 5 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 64
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 65 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 124
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 125 PKYILEQF 132
>gi|90083116|dbj|BAE90640.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|14589951|ref|NP_002686.2| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Homo
sapiens]
gi|149761124|ref|XP_001496313.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Equus caballus]
gi|301776310|ref|XP_002923555.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Ailuropoda melanoleuca]
gi|301776312|ref|XP_002923556.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Ailuropoda melanoleuca]
gi|335282254|ref|XP_003354010.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Sus scrofa]
gi|335282256|ref|XP_003354011.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Sus scrofa]
gi|348550374|ref|XP_003461007.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cavia porcellus]
gi|395831291|ref|XP_003788737.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Otolemur garnettii]
gi|402903526|ref|XP_003914616.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Papio anubis]
gi|403308121|ref|XP_003944520.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Saimiri boliviensis boliviensis]
gi|403308123|ref|XP_003944521.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Saimiri boliviensis boliviensis]
gi|403308125|ref|XP_003944522.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Saimiri boliviensis boliviensis]
gi|403308127|ref|XP_003944523.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Saimiri boliviensis boliviensis]
gi|426229485|ref|XP_004008821.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Ovis aries]
gi|426229487|ref|XP_004008822.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Ovis aries]
gi|426386425|ref|XP_004059685.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 1 [Gorilla gorilla gorilla]
gi|426386427|ref|XP_004059686.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 2 [Gorilla gorilla gorilla]
gi|426386429|ref|XP_004059687.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 3 [Gorilla gorilla gorilla]
gi|426386431|ref|XP_004059688.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 isoform 4 [Gorilla gorilla gorilla]
gi|678549|gb|AAA62401.1| RNA polymerase II 23kD subunit [Homo sapiens]
gi|13325244|gb|AAH04441.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
gi|119589954|gb|EAW69548.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|119589955|gb|EAW69549.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_b [Homo sapiens]
gi|189069173|dbj|BAG35511.1| unnamed protein product [Homo sapiens]
gi|208967082|dbj|BAG73555.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|296485369|tpg|DAA27484.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bos taurus]
gi|312152670|gb|ADQ32847.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [synthetic
construct]
gi|355755269|gb|EHH59016.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
fascicularis]
gi|387542622|gb|AFJ71938.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Macaca
mulatta]
gi|410264992|gb|JAA20462.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410264994|gb|JAA20463.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299730|gb|JAA28465.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|410299732|gb|JAA28466.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Pan
troglodytes]
gi|440910422|gb|ELR60220.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
grunniens mutus]
Length = 210
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|351714028|gb|EHB16947.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Heterocephalus glaber]
Length = 292
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 89/127 (70%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F ++FG+ + +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGHPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVF 126
K+ LE F
Sbjct: 124 KYILEQF 130
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 40/54 (74%)
Query: 73 PDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
P+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 159 PEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 212
>gi|1060912|dbj|BAA07406.1| RPB5 [Homo sapiens]
Length = 210
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|46255774|gb|AAH34144.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Homo
sapiens]
Length = 210
Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|72109111|ref|XP_783584.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Strongylocentrotus purpuratus]
gi|390354452|ref|XP_003728337.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Strongylocentrotus purpuratus]
Length = 210
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 90/130 (69%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
++DE E RL+R+RRT+MQ+ DRGY V E++ + EQF +FG+ R+DL +
Sbjct: 1 MNDEAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E+KVG+KT+K Y RM+ EN+ RAI+ VQ+ +TP A+T + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEKKVGMKTIKAYCQRMQEENITRAIITVQEKMTPSAKTSLGD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|432101146|gb|ELK29430.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Myotis
davidii]
Length = 203
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 88/127 (69%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVF 126
K+ LE F
Sbjct: 124 KYILEQF 130
>gi|197098756|ref|NP_001126823.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Pongo
abelii]
gi|75054736|sp|Q5R587.1|RPAB1_PONAB RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|55732763|emb|CAH93079.1| hypothetical protein [Pongo abelii]
Length = 210
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|350537103|ref|NP_001232745.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|118103219|ref|XP_418224.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Gallus gallus]
gi|126323555|ref|XP_001365263.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Monodelphis domestica]
gi|395513329|ref|XP_003760879.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Sarcophilus harrisii]
gi|197127122|gb|ACH43620.1| putative DNA directed RNA polymerase II polypeptide E [Taeniopygia
guttata]
gi|387018228|gb|AFJ51232.1| putative DNA directed RNA polymerase II polypeptide E [Crotalus
adamanteus]
Length = 210
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|332373332|gb|AEE61807.1| unknown [Dendroctonus ponderosae]
Length = 210
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEHFGDKPSEKRPSRSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G++T+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIRTIKTYCQRMQDENIHRAIIVVQAGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|156548548|ref|XP_001604962.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Nasonia vitripennis]
Length = 210
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQSGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|226371984|gb|ACO51617.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Rana
catesbeiana]
Length = 210
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|332022832|gb|EGI63105.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Acromyrmex echinatior]
Length = 210
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINK 58
++E +L+RIR+TVMQ+ DRGY V E++ + E F +FG+ R DL++
Sbjct: 3 DEDETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLELFKEQFGDKPSEKRPARSDLIVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|346469147|gb|AEO34418.1| hypothetical protein [Amblyomma maculatum]
Length = 210
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 88/130 (67%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + +QF +FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARNDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQTGMTPSAKQALGD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEHF 130
>gi|307214976|gb|EFN89821.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Harpegnathos saltator]
Length = 210
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINK 58
++E +L+RIR+T+MQ+ DRGY V E++ + EQF +G+ R +L++
Sbjct: 3 DEDETYKLWRIRKTIMQLCHDRGYLVTQDELDQTIEQFKEHYGDKPSEKRPARSELIVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFPDE K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLTDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|289740815|gb|ADD19155.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|387915534|gb|AFK11376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Callorhinchus milii]
Length = 210
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F +FG+ + +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRNQFGDKPSEGHPRRSDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|348504738|ref|XP_003439918.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Oreochromis niloticus]
Length = 210
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
DEE RL++IR+T+MQ+ DRGY V E++ + E+F ++FG+ +R DL +
Sbjct: 3 DDEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|289740817|gb|ADD19156.1| RNA polymerase 25-kDa subunit [Glossina morsitans morsitans]
Length = 210
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|297275632|ref|XP_001117242.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Macaca mulatta]
Length = 203
Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+E+ RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEDTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|62858213|ref|NP_001016473.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
(Silurana) tropicalis]
gi|148225220|ref|NP_001083516.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Xenopus
laevis]
gi|38051843|gb|AAH60467.1| MGC68604 protein [Xenopus laevis]
gi|89272916|emb|CAJ82278.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
gi|163916440|gb|AAI57232.1| polymerase (RNA) II (DNA directed) polypeptide E [Xenopus
(Silurana) tropicalis]
Length = 210
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|391342990|ref|XP_003745798.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Metaseiulus occidentalis]
Length = 210
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ E F +FG+ + R DLV+
Sbjct: 1 MDDEAETYKLWRIRKTIMQLCHDRGYLVTQEELDQDLEGFKEQFGDKPSDKHPARGDLVV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
+ +D +DQ++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQ +TP AR + +
Sbjct: 61 LVSHNDDPTDQMFVFFPDEAKIGIKTIKTYCQRMQEENISRAIIVVQAGMTPSARQALGD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEHF 130
>gi|91087261|ref|XP_975533.1| PREDICTED: similar to AGAP010064-PA [Tribolium castaneum]
gi|270010583|gb|EFA07031.1| hypothetical protein TcasGA2_TC010003 [Tribolium castaneum]
Length = 210
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 86/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF + G+ R DL I
Sbjct: 1 MDDEAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFPDE K+G+K +KTY RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|242247587|ref|NP_001156054.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1-like
[Acyrthosiphon pisum]
gi|239793387|dbj|BAH72818.1| ACYPI000388 [Acyrthosiphon pisum]
Length = 210
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 88/130 (67%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+TVMQ+ DRGY V E++ + EQF +FG+ R DL++
Sbjct: 1 MDDECESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ E + RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCQRMQEETITRAIIVVQQGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|441656609|ref|XP_004093285.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1 [Nomascus leucogenys]
Length = 210
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQXGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|256071874|ref|XP_002572263.1| DNA-directed RNA polymerase II [Schistosoma mansoni]
Length = 208
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
T+ D E +L+RIR+T+++M +DRGY V E+ S E F A G+ R+DL++
Sbjct: 3 TMDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHE 62
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-NLTPFARTCIQEISAK 120
D +D +YVFFP+E+KV +KT++ Y N+M+ ++ +RAILV+Q+ LTP A+T I E+S K
Sbjct: 63 EDPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCK 122
Query: 121 FHLEVF 126
+ LE F
Sbjct: 123 YTLECF 128
>gi|440803359|gb|ELR24265.1| RNA polymerase Rpb5, Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 204
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 90/124 (72%), Gaps = 2/124 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF-GEN-MKREDLVINKALRND 63
+E+ R+F +R+TV+QML+DRGY V +++M ++ F +KF GE+ + RE L + ++D
Sbjct: 2 DEVGRVFLVRKTVLQMLQDRGYIVPQSDLDMDRDSFRSKFMGESALNREALTLLMQKKDD 61
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
+DQI+VF+P++ KVGV+ +K Y +RMK E VFRAI+++QQ LT FA+ E++ ++ +
Sbjct: 62 PTDQIFVFWPEDLKVGVRPVKKYCDRMKEEAVFRAIVIIQQTLTAFAKQVFAEMAPRYTI 121
Query: 124 EVFQ 127
E FQ
Sbjct: 122 EHFQ 125
>gi|412988339|emb|CCO17675.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Bathycoccus prasinos]
Length = 205
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 82/119 (68%), Gaps = 2/119 (1%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIY 69
+LFRIR+TV +ML RGY V E+ K+ F+ +FGE + RE L I R+D S+ I+
Sbjct: 9 KLFRIRKTVSKMLASRGYLVSQKELERDKDSFLEEFGE-VSREHLTIMVPKRDDPSENIF 67
Query: 70 VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SAKFHLEVFQ 127
VFFP+E+KVGVK +K Y RM+ ENV RAI+V++ +LTPFA+ + E+ KF +E FQ
Sbjct: 68 VFFPEEEKVGVKMIKDYAKRMREENVMRAIIVIRSSLTPFAKQSLLEVQQQKFIIETFQ 126
>gi|116242767|sp|P19388.4|RPAB1_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II 23
kDa polypeptide; AltName: Full=DNA-directed RNA
polymerase II subunit E; AltName: Full=RPB5 homolog;
AltName: Full=XAP4
gi|2896797|gb|AAC03238.1| RPB5_Human [Homo sapiens]
gi|311349818|gb|ADP92094.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349820|gb|ADP92095.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349822|gb|ADP92096.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349824|gb|ADP92097.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349826|gb|ADP92098.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349828|gb|ADP92099.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349830|gb|ADP92100.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349832|gb|ADP92101.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349834|gb|ADP92102.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349836|gb|ADP92103.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349838|gb|ADP92104.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349840|gb|ADP92105.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349842|gb|ADP92106.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349844|gb|ADP92107.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349846|gb|ADP92108.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349848|gb|ADP92109.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349850|gb|ADP92110.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349852|gb|ADP92111.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349854|gb|ADP92112.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349856|gb|ADP92113.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349858|gb|ADP92114.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349860|gb|ADP92115.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349862|gb|ADP92116.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349864|gb|ADP92117.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349866|gb|ADP92118.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349868|gb|ADP92119.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349870|gb|ADP92120.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349872|gb|ADP92121.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349874|gb|ADP92122.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349876|gb|ADP92123.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349878|gb|ADP92124.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349880|gb|ADP92125.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349882|gb|ADP92126.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349884|gb|ADP92127.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349886|gb|ADP92128.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349888|gb|ADP92129.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349890|gb|ADP92130.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349892|gb|ADP92131.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349894|gb|ADP92132.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
gi|311349896|gb|ADP92133.1| DNA-directed RNA polymerase subunit RPABC1 [Homo sapiens]
Length = 210
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+ G+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|432855568|ref|XP_004068251.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 1 [Oryzias latipes]
Length = 210
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|405965226|gb|EKC30623.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Crassostrea gigas]
Length = 210
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 86/127 (67%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
++E +L+RIR+T+MQ+ DRGY V E++ + E+F +FG+ R DL++ A
Sbjct: 4 EQETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSERKPSRSDLIVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E VG+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPNVGIKTIKTYCQRMQEENITRAIIVVQNRMTPSAKQSLTDMAP 123
Query: 120 KFHLEVF 126
K+ LE F
Sbjct: 124 KYILEQF 130
>gi|195119282|ref|XP_002004160.1| GI19761 [Drosophila mojavensis]
gi|195401380|ref|XP_002059291.1| GJ18195 [Drosophila virilis]
gi|193909228|gb|EDW08095.1| GI19761 [Drosophila mojavensis]
gi|194142297|gb|EDW58703.1| GJ18195 [Drosophila virilis]
Length = 210
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|195426896|ref|XP_002061524.1| GK20665 [Drosophila willistoni]
gi|194157609|gb|EDW72510.1| GK20665 [Drosophila willistoni]
Length = 210
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|195026900|ref|XP_001986362.1| GH20567 [Drosophila grimshawi]
gi|193902362|gb|EDW01229.1| GH20567 [Drosophila grimshawi]
Length = 210
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|56755813|gb|AAW26085.1| SJCHGC05306 protein [Schistosoma japonicum]
gi|226469816|emb|CAX70189.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226469818|emb|CAX70190.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
gi|226487596|emb|CAX74668.1| polymerase (RNA) II (DNA directed) polypeptide E [Schistosoma
japonicum]
Length = 206
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
L D E +L+RIR+T+++M +DRGY V E+ S E F A G+ R+DL++
Sbjct: 2 LDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHEE 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-NLTPFARTCIQEISAKF 121
D +D +YVFFP+E+KV +KT++ Y N+M+ ++ +RAILV+Q+ LTP A+T I E+S K+
Sbjct: 62 DPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKY 121
Query: 122 HLEVF 126
LE F
Sbjct: 122 TLECF 126
>gi|19922004|ref|NP_610630.1| Rpb5, isoform A [Drosophila melanogaster]
gi|442623281|ref|NP_001260878.1| Rpb5, isoform B [Drosophila melanogaster]
gi|194884129|ref|XP_001976148.1| GG22706 [Drosophila erecta]
gi|195333273|ref|XP_002033316.1| GM20482 [Drosophila sechellia]
gi|195483584|ref|XP_002090346.1| GE13062 [Drosophila yakuba]
gi|195551744|ref|XP_002076283.1| GD15257 [Drosophila simulans]
gi|7303678|gb|AAF58728.1| Rpb5, isoform A [Drosophila melanogaster]
gi|17945808|gb|AAL48951.1| RE34924p [Drosophila melanogaster]
gi|190659335|gb|EDV56548.1| GG22706 [Drosophila erecta]
gi|194125286|gb|EDW47329.1| GM20482 [Drosophila sechellia]
gi|194176447|gb|EDW90058.1| GE13062 [Drosophila yakuba]
gi|194201932|gb|EDX15508.1| GD15257 [Drosophila simulans]
gi|220948406|gb|ACL86746.1| Rpb5-PA [synthetic construct]
gi|220957602|gb|ACL91344.1| Rpb5-PA [synthetic construct]
gi|440214282|gb|AGB93411.1| Rpb5, isoform B [Drosophila melanogaster]
Length = 210
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|194752750|ref|XP_001958682.1| GF12445 [Drosophila ananassae]
gi|190619980|gb|EDV35504.1| GF12445 [Drosophila ananassae]
Length = 210
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|195164101|ref|XP_002022887.1| GL16482 [Drosophila persimilis]
gi|198471627|ref|XP_002133786.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
gi|194104949|gb|EDW26992.1| GL16482 [Drosophila persimilis]
gi|198146002|gb|EDY72413.1| GA22602 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
+ DE E +L+RIR+T+MQ+ DRGY V E++ + EQF FG+ R DL++
Sbjct: 1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIV 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP+E K+G+KT+KTY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|84000159|ref|NP_001033182.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Bos
taurus]
gi|109893821|sp|Q2T9T3.1|RPAB1_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=DNA-directed RNA polymerase II
subunit E; AltName: Full=RPB5 homolog
gi|83405854|gb|AAI11281.1| Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Bos
taurus]
Length = 210
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V ++ + E+F A+FG +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|340377807|ref|XP_003387420.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 210
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 88/130 (67%), Gaps = 6/130 (4%)
Query: 3 LSDEEIK-RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVI 56
+ +EE+ RL+RIR+TVMQM DR Y V E++ + +QF +FGE + R DL I
Sbjct: 1 MDNEEVTYRLWRIRKTVMQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP++ KVG+KT+K Y RM+ EN+ RAI+VVQQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEDPKVGIKTIKQYCGRMQEENISRAIIVVQQGMTPSAKQALVD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|209738396|gb|ACI70067.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 159
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
DEE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DDEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|410921186|ref|XP_003974064.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Takifugu rubripes]
gi|47216655|emb|CAG04853.1| unnamed protein product [Tetraodon nigroviridis]
Length = 210
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|360043810|emb|CCD81356.1| putative dna-directed RNA polymerase II [Schistosoma mansoni]
Length = 205
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+ D E +L+RIR+T+++M +DRGY V E+ S E F A G+ R+DL++
Sbjct: 1 MDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEE 60
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-NLTPFARTCIQEISAKF 121
D +D +YVFFP+E+KV +KT++ Y N+M+ ++ +RAILV+Q+ LTP A+T I E+S K+
Sbjct: 61 DPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKY 120
Query: 122 HLEVF 126
LE F
Sbjct: 121 TLECF 125
>gi|225706160|gb|ACO08926.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Osmerus mordax]
Length = 210
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|229366774|gb|ACQ58367.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Anoplopoma fimbria]
Length = 210
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|209733016|gb|ACI67377.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|225715082|gb|ACO13387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
DEE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DDEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|57525846|ref|NP_001003564.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Danio
rerio]
gi|50417194|gb|AAH77151.1| Polymerase (RNA) II (DNA directed) polypeptide E [Danio rerio]
Length = 210
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|350018416|dbj|GAA37368.1| DNA-directed RNA polymerases I II and III subunit RPABC1
[Clonorchis sinensis]
Length = 206
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+ D E +L+RIR+T+++M +DRGY V E+ + + F G+ R+DL++
Sbjct: 2 IDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQTLDDFKLSVGDPPSRKDLLMVVNHEE 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-NLTPFARTCIQEISAKF 121
D +D +YVFFPDE+KV +KT++ Y N+M+ ++ +RAILV+Q+ LTPFA+T + E+S K+
Sbjct: 62 DPADMLYVFFPDEEKVNMKTIRAYLNQMQQDSTYRAILVLQEKGLTPFAKTALAELSCKY 121
Query: 122 HLEVF 126
LE F
Sbjct: 122 TLECF 126
>gi|291240531|ref|XP_002740164.1| PREDICTED: DNA directed RNA polymerase II polypeptide E-like
[Saccoglossus kowalevskii]
Length = 210
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 86/127 (67%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKA 59
D E +L+RIR+T+MQ+ DRGY V E++ + +QF ++FG+ +R DL + A
Sbjct: 4 DAETYKLWRIRKTIMQLCHDRGYLVTQEELDQTLDQFKSQFGDKPSEGRPRRNDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ+++FFP+E K+G+KT+KTY +M+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFIFFPEEPKIGIKTIKTYCQKMQEENITRATIVVQAGMTPSAKQSLVDMAP 123
Query: 120 KFHLEVF 126
K+ LE F
Sbjct: 124 KYILEQF 130
>gi|225717382|gb|ACO14537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Esox
lucius]
Length = 210
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLA 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|357500693|ref|XP_003620635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355495650|gb|AES76853.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 239
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M ++E+I +L+RIR+T++QML DR Y V + ++ MS+E FI KFGE+MKRE L IN
Sbjct: 1 MVFTEEDITKLYRIRKTILQMLFDRNYLVDETQLTMSREDFIFKFGEHMKREQLEINTTH 60
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA- 119
RN+ S++I VFF D+ K+GV ++ NRM ENV I+V Q L+P AR + +S+
Sbjct: 61 RNNLSEKICVFFFDDAKLGVNIVRGIINRMLKENVDNGIMVCQNKLSPAARKAVAGMSSI 120
Query: 120 -KFHLEVF 126
LEVF
Sbjct: 121 GSKRLEVF 128
>gi|313765818|gb|ADR80315.1| RNA polymerase B5-subunit [Rutilus rutilus]
Length = 129
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLE 124
K+ LE
Sbjct: 123 PKYILE 128
>gi|317574789|ref|NP_001187413.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
gi|308322947|gb|ADO28611.1| DNA-directed RNA polymerases i II and III subunit rpabc1 [Ictalurus
punctatus]
Length = 210
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++ R+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKTRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|341885241|gb|EGT41176.1| CBN-RPB-5 protein [Caenorhabditis brenneri]
gi|341885706|gb|EGT41641.1| hypothetical protein CAEBREN_11585 [Caenorhabditis brenneri]
Length = 211
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 86/131 (65%), Gaps = 7/131 (5%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F FG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLEHFKETFGDRPSEKKPARADLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFPD+ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYMLEHF 131
>gi|209732756|gb|ACI67247.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
gi|303659190|gb|ADM15954.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Salmo
salar]
Length = 210
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA +VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|292611220|ref|XP_002661023.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Danio rerio]
Length = 210
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+TVMQ+ DRGY V E++ + ++F +FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEELKVGIKTIKMYCQRMQEENITRAVIVVQTGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|298712690|emb|CBJ48715.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 212
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
LSDE K ++RIR+T M+ML RGY V ++M+ E F+ ++G R DL + +
Sbjct: 8 LSDEGHK-IYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVD 66
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D DQI+VFFPD++KVGVK +++Y+ +M E V RAI+V++ +TPFAR+ IQE+ A+
Sbjct: 67 DPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQRE 126
Query: 123 LEVFQVNVFSLMI 135
++V LM+
Sbjct: 127 VQVEDFKDAELML 139
>gi|344243380|gb|EGV99483.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Cricetulus griseus]
Length = 218
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 88/135 (65%), Gaps = 13/135 (9%)
Query: 5 DEEIKRLFRIRRTVMQ--------MLRDRGYFVGDFEINMSKEQFIAKFGENM-----KR 51
+EE RL++IR+T+MQ + DRGY V E++ + E+F A+FG+ +R
Sbjct: 4 EEETYRLWKIRKTIMQASDSLSLQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRR 63
Query: 52 EDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+
Sbjct: 64 TDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAK 123
Query: 112 TCIQEISAKFHLEVF 126
+ +++ K+ LE F
Sbjct: 124 QSLVDMAPKYVLEQF 138
>gi|260788314|ref|XP_002589195.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
gi|229274370|gb|EEN45206.1| hypothetical protein BRAFLDRAFT_278645 [Branchiostoma floridae]
Length = 210
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 85/128 (66%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINK 58
++E +L+RIR+T+MQ+ DRGY V E++ +QF +FG+ R+DLV+
Sbjct: 3 DEQETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFF DE K+G+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFADEPKIGIKTIKMYCQRMQEENISRAIIVVQMGMTPSAKQALVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|308321620|gb|ADO27961.1| DNA-directed RNA polymerases I, II and III subunit rpabc1
[Ictalurus furcatus]
Length = 210
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + ++F ++FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y R++ EN+ RAI+VVQ +TP A+ +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRIQEENITRAIIVVQMGMTPSAKQSPVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|224087898|ref|XP_002198655.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Taeniopygia guttata]
Length = 119
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 79/113 (69%), Gaps = 5/113 (4%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAK 115
>gi|290462657|gb|ADD24376.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Lepeophtheirus salmonis]
Length = 210
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINK 58
D EI +L+++R+TVM + DRGY V E++ + EQF +FG+ R DL I
Sbjct: 3 DDAEIYKLWKVRKTVMCLCHDRGYLVTQDELDQTIEQFKIQFGDKPSEKQPSRNDLTILV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP++ K+G+K ++TY RM+ EN+ RAI+VVQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEDPKIGIKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>gi|294944697|ref|XP_002784385.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239897419|gb|EER16181.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 82/122 (67%), Gaps = 5/122 (4%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE----NMKREDLVINKALRNDSS 65
RL+R+R+T+ ++L+DRGY V +N +KE F ++ E R DL+I + ++D S
Sbjct: 12 RLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71
Query: 66 DQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
DQ+ VFFPDE K VGVK ++T +M+ + + RAILVVQQ LT FA+T IQE S + +E
Sbjct: 72 DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIE 131
Query: 125 VF 126
VF
Sbjct: 132 VF 133
>gi|17507947|ref|NP_491961.1| Protein RPB-5 [Caenorhabditis elegans]
gi|54036433|sp|Q9N5K2.1|RPAB1_CAEEL RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
gi|351064177|emb|CCD72467.1| Protein RPB-5 [Caenorhabditis elegans]
Length = 211
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 87/131 (66%), Gaps = 7/131 (5%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F ++G+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYMLEHF 131
>gi|294950415|ref|XP_002786618.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239900910|gb|EER18414.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 213
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 84/127 (66%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE----NMKREDLVINKAL 60
D+ RL+R+R+T+ ++L+DRGY V +N +KE F ++ E R DL+I +
Sbjct: 7 DDTTIRLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSK 66
Query: 61 RNDSSDQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
++D SDQ+ VFFPDE K VGVK ++T +M+ + + RAILVVQQ LT FA+T IQE S
Sbjct: 67 QDDPSDQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASP 126
Query: 120 KFHLEVF 126
+ +EVF
Sbjct: 127 QMEIEVF 133
>gi|268568358|ref|XP_002640230.1| C. briggsae CBR-RPB-5 protein [Caenorhabditis briggsae]
gi|296439763|sp|A8XGH1.1|RPAB1_CAEBR RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 211
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 7/131 (5%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F FG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYMLEHF 131
>gi|307108804|gb|EFN57043.1| hypothetical protein CHLNCDRAFT_48698 [Chlorella variabilis]
Length = 203
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 80/118 (67%), Gaps = 5/118 (4%)
Query: 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG-----ENMKREDLVINKALRNDSSDQI 68
IRRT ++MLRDRGY + ++ MS +F+ KF EN++R+ + I + +D + Q
Sbjct: 6 IRRTCLEMLRDRGYQIDKEDVEMSGRKFVEKFATEPDPENVRRDAITILASKADDPTHQA 65
Query: 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+VFF ++ K+GVK +K RM+ E V R+ILV+Q LTPFA+ CIQE+SAKF +EVF
Sbjct: 66 FVFFFEDPKLGVKAIKAVAVRMRDERVPRSILVLQDKLTPFAKQCIQEMSAKFAIEVF 123
>gi|241017563|gb|ACS66689.1| RNA polymerase II B subunit [Caenorhabditis brenneri]
Length = 211
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 85/131 (64%), Gaps = 7/131 (5%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ F FG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFPD+ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYMLEHF 131
>gi|225718552|gb|ACO15122.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
clemensi]
Length = 210
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 86/130 (66%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVI 56
+ DE E +L+++R+TVM + DRGY V E++ +++QF +FG+ R DL I
Sbjct: 1 MDDESETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
A +D +DQ++VFFP++ K+GVK ++TY RM+ EN+ RAI+VVQ +TP A+ + +
Sbjct: 61 LVAHNDDPTDQMFVFFPEDPKIGVKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMD 120
Query: 117 ISAKFHLEVF 126
++ K+ LE F
Sbjct: 121 MAPKYILEQF 130
>gi|326934422|ref|XP_003213289.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Meleagris gallopavo]
Length = 209
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 85/128 (66%), Gaps = 6/128 (4%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F +FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++V FP E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVSFP-EPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 121
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 122 PKYILEQF 129
>gi|195150967|ref|XP_002016421.1| GL10501 [Drosophila persimilis]
gi|194110268|gb|EDW32311.1| GL10501 [Drosophila persimilis]
Length = 210
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 85/127 (66%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
+EE+ +++RIR+TV+QM DRGY V E++ + + F FG+ R D+ + A
Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP+E KVG+K +K Y RM+ E+++RAI+VVQ ++TP AR + E++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123
Query: 120 KFHLEVF 126
K+ LE F
Sbjct: 124 KYVLEQF 130
>gi|308505230|ref|XP_003114798.1| CRE-RPB-5 protein [Caenorhabditis remanei]
gi|308258980|gb|EFP02933.1| CRE-RPB-5 protein [Caenorhabditis remanei]
Length = 211
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 87/131 (66%), Gaps = 7/131 (5%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F ++G+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKEQYGDRPSEKKPARSDLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RA++VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAVIVVQIGMTPSAKQSIG 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYMLEHF 131
>gi|114674426|ref|XP_512960.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan troglodytes]
Length = 230
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 80/117 (68%), Gaps = 5/117 (4%)
Query: 15 RRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIY 69
R+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++
Sbjct: 34 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 93
Query: 70 VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 94 VFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 150
>gi|225711614|gb|ACO11653.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Caligus
rogercresseyi]
Length = 210
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 81/122 (66%), Gaps = 5/122 (4%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKALRNDS 64
+L+++R+TVM + DRGY V E++ + +QF +FG+ R DL I A +D
Sbjct: 9 KLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVAHNDDP 68
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+DQ++VFFPD+ K+G+K ++TY RM+ EN+ RAI++VQ +TP A+ + +++ K+ LE
Sbjct: 69 TDQMFVFFPDDPKIGIKHIRTYCKRMQEENITRAIILVQSGMTPSAKQSLMDMAPKYILE 128
Query: 125 VF 126
F
Sbjct: 129 QF 130
>gi|198457753|ref|XP_002138441.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
gi|198136092|gb|EDY68999.1| GA24393 [Drosophila pseudoobscura pseudoobscura]
Length = 210
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 84/127 (66%), Gaps = 5/127 (3%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
+EE+ +++RIR+TV+QM DRGY V E++ + + F FG+ R D+ + A
Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+D +DQ++VFFP E KVG+K +K Y RM+ E+++RAI+VVQ ++TP AR + E++
Sbjct: 64 HNDDPTDQMFVFFPQEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123
Query: 120 KFHLEVF 126
K+ LE F
Sbjct: 124 KYVLEQF 130
>gi|219112619|ref|XP_002178061.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410946|gb|EEC50875.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 228
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 81/121 (66%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLFR+ RT+ ML RGY V ++ F +FGE RE+L I +D ++
Sbjct: 29 EAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTN 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
Q+++FFP+++KVGVK +K YT+RM++E+V AI++++ ++TPFA+ +QE+S F +E F
Sbjct: 89 QLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHF 148
Query: 127 Q 127
+
Sbjct: 149 K 149
>gi|313226453|emb|CBY21598.1| unnamed protein product [Oikopleura dioica]
Length = 210
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 80/122 (65%), Gaps = 5/122 (4%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKALRNDS 64
+L+RIR+T+M M DR Y V E++ + EQF A+FG R+DL I +D
Sbjct: 9 KLWRIRKTIMAMCHDRKYLVAQRELDQTLEQFKAEFGSQPSQGQPSRKDLTIIVCHSDDP 68
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+DQ++VFFP++ KV +K +K Y RM+ EN+ RA++V+QQ++TP A+ + +++ K+ LE
Sbjct: 69 TDQMFVFFPEDPKVTIKQVKIYCQRMQEENITRALIVIQQSMTPSAKQALDDMAPKYTLE 128
Query: 125 VF 126
F
Sbjct: 129 SF 130
>gi|354480932|ref|XP_003502657.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cricetulus griseus]
Length = 235
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 90/152 (59%), Gaps = 30/152 (19%)
Query: 5 DEEIKRLFRIRRTVMQ---------------MLR----------DRGYFVGDFEINMSKE 39
+EE RL++IR+T+MQ +LR DRGY V E++ + E
Sbjct: 4 EEETYRLWKIRKTIMQASDRPASSPHPASGGLLRAHTALMGLCHDRGYLVTQDELDQTLE 63
Query: 40 QFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSEN 94
+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN
Sbjct: 64 EFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEEN 123
Query: 95 VFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 124 ITRALIVVQQGMTPSAKQSLVDMAPKYVLEQF 155
>gi|215399667|gb|ACJ65826.1| RNA polymerase II [Oreochromis niloticus]
Length = 108
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 75/107 (70%), Gaps = 5/107 (4%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDS 64
RL++IR+T+MQ+ DRGY V E++ + E+F ++FG+ +R DL + A +D
Sbjct: 1 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+DQ++VFFP+E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+
Sbjct: 61 TDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAK 107
>gi|224001668|ref|XP_002290506.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
gi|220973928|gb|EED92258.1| RPB5,-like protein to RNA polymerase i [Thalassiosira pseudonana
CCMP1335]
Length = 226
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 77/121 (63%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLFR+ +TV ML RGY V M+ F +FGE RE L I +D ++
Sbjct: 27 EASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETN 86
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
Q++VFFP+++KVGVK +K T+RMK ENV AILV++ ++TPFA+ + E+S F LE F
Sbjct: 87 QLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHF 146
Query: 127 Q 127
+
Sbjct: 147 K 147
>gi|312095335|ref|XP_003148322.1| RPB-5 protein [Loa loa]
gi|307756513|gb|EFO15747.1| DNA-directed RNA polymerase I [Loa loa]
Length = 211
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 86/131 (65%), Gaps = 7/131 (5%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ +L+R+R+T+MQM DRGY V E++ + E F FG+ + R +L
Sbjct: 1 MADDELETYKLWRVRKTIMQMCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
+ A +D +DQ++VFFP++ K+G+KT+K +M+ + + RAI+VVQ +TP A+ I
Sbjct: 61 VLVAHNDDPTDQMFVFFPEDSKIGIKTIKAICQQMQEQAITRAIIVVQTGMTPSAKQAIA 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYTLEQF 131
>gi|182676597|sp|Q54EH2.2|RPAB1_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPB5 homolog
Length = 197
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 79/130 (60%), Gaps = 7/130 (5%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+I RL +IR+TV+QML DR Y + +E +E F++ RE+L + ++D +
Sbjct: 2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPT 54
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
D IYVFFPD KVGV +K Y + MK RAI+VVQQN+TPFA+ + E S + + +
Sbjct: 55 DSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITL 114
Query: 126 FQVNVFSLMI 135
Q N L++
Sbjct: 115 EQFNEAELLV 124
>gi|324521545|gb|ADY47878.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Ascaris
suum]
Length = 211
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 85/131 (64%), Gaps = 7/131 (5%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
++D+E++ +L+R+R+TVMQM DRGY V E++ + + F FG+ R +L
Sbjct: 1 MADDELETYKLWRVRKTVMQMCHDRGYLVTQEELDQTLDNFKETFGDKPSERKPGRNELT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ + + RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPTDQMFVFFPEDAKIGIKTIKAICQQMQEQAITRAIIVVQAGMTPSAKQAIT 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYTLEQF 131
>gi|196010385|ref|XP_002115057.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582440|gb|EDV22513.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 210
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR--- 61
+EE +L+RIR+TVMQM DRGY V E++ + +QF +F M V + L
Sbjct: 4 EEEAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQV--RGLLSML 61
Query: 62 ----NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
+D ++Q++VFFPDE KVG+ T+K Y RM+ EN+ RAI+++Q +TP A+ + ++
Sbjct: 62 VHHIDDPTEQLFVFFPDEPKVGINTIKKYCQRMQRENINRAIIIIQSGMTPTAKQSLIDM 121
Query: 118 SAKFHLEVF 126
+ K+ LE F
Sbjct: 122 APKYTLESF 130
>gi|397485347|ref|XP_003813812.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1 [Pan paniscus]
Length = 256
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 76/113 (67%), Gaps = 5/113 (4%)
Query: 19 MQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFP 73
+Q+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP
Sbjct: 64 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 123
Query: 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 124 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 176
>gi|281341350|gb|EFB16934.1| hypothetical protein PANDA_012732 [Ailuropoda melanoleuca]
Length = 193
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 76/113 (67%), Gaps = 5/113 (4%)
Query: 19 MQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFP 73
+Q+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP
Sbjct: 1 LQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFP 60
Query: 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 61 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 113
>gi|149034606|gb|EDL89343.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034607|gb|EDL89344.1| rCG29511, isoform CRA_a [Rattus norvegicus]
gi|149034608|gb|EDL89345.1| rCG29511, isoform CRA_a [Rattus norvegicus]
Length = 202
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 76/115 (66%), Gaps = 5/115 (4%)
Query: 17 TVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVF 71
+ Q+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VF
Sbjct: 8 SASQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 67
Query: 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
FP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 68 FPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYVLEQF 122
>gi|339233930|ref|XP_003382082.1| retinol dehydrogenase 12 [Trichinella spiralis]
gi|316979012|gb|EFV61880.1| retinol dehydrogenase 12 [Trichinella spiralis]
Length = 508
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 83/131 (63%), Gaps = 5/131 (3%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
M D EI RL++IR+ QM RDRG+ V +E++ + E F+ ++G+ R DL
Sbjct: 1 MAEDDREIFRLWKIRQNAFQMCRDRGFLVTSYELDQNFEDFVRQYGDRPSEGKPARSDLS 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
+ D+++ ++V+F DE+KVG+KT+K R++SEN+ RAI++VQ+ +T AR +
Sbjct: 61 FLVSHEEDAAENLFVYFADERKVGIKTIKNVCLRLQSENMSRAIMIVQEPMTAIARHSVA 120
Query: 116 EISAKFHLEVF 126
++S K+ LE F
Sbjct: 121 DLSPKYKLEQF 131
>gi|15242916|ref|NP_200606.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
gi|9758367|dbj|BAB08868.1| RNA polymerase I, II and III 24.3 kDa subunit-like protein
[Arabidopsis thaliana]
gi|332009598|gb|AED96981.1| RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]
Length = 210
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M+ D+EI R+F++RRTV+QMLRDRGY + + ++N+ +E+F+ +F + M +E L ++
Sbjct: 1 MSDMDDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVS 60
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTN-RMKSENVFRAILVVQQNLTPFARTCIQE 116
+ +D+IYVF+P+ KVGV +K +M+ + V R I+VV +T AR + E
Sbjct: 61 ANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSE 120
Query: 117 ISAKFHLEVFQVNVFSLMIYTCKLFN 142
++ +EVF+ I KL N
Sbjct: 121 LNKMLTIEVFEEAELVTNITEHKLVN 146
>gi|168036467|ref|XP_001770728.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677946|gb|EDQ64410.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 211
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 86/139 (61%), Gaps = 7/139 (5%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
D + L+++R+ V++M+RD Y V D E+ ++ EQF K+ E+ K+EDL+I K +++
Sbjct: 7 DRQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMILKPKSSNN 66
Query: 65 SDQIYVFFP---DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
++ P + +VG+KT+KT RMK ENV RA+ VVQQ++TP ++ I + K+
Sbjct: 67 AEH----GPKTGGKGRVGLKTIKTCKKRMKRENVPRAVFVVQQHITPLSKQYISRKAQKY 122
Query: 122 HLEVFQVNVFSLMIYTCKL 140
HLEVF F + I C L
Sbjct: 123 HLEVFLEPEFLVNITECYL 141
>gi|339250892|ref|XP_003374431.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
gi|316969258|gb|EFV53386.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Trichinella spiralis]
Length = 211
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 81/131 (61%), Gaps = 5/131 (3%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
M D EI RL++IR QM RDRG+ V E++ + E F+ ++G+ R DL
Sbjct: 1 MAEDDREIFRLWKIRHNAFQMCRDRGFLVTSNELDQNFEDFVRQYGDRPSEGKPARSDLS 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
+ D+++ ++V+F DE+KVG+KT+K R++SEN+ RAI++VQ+ +T AR +
Sbjct: 61 FLVSHEEDAAENLFVYFADEKKVGIKTIKNVCLRLQSENMSRAIMIVQEPMTAIARHSVA 120
Query: 116 EISAKFHLEVF 126
++S K+ LE F
Sbjct: 121 DLSPKYRLEQF 131
>gi|198471708|ref|XP_002133816.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
gi|198146041|gb|EDY72443.1| GA22581 [Drosophila pseudoobscura pseudoobscura]
Length = 320
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
++DE E+ +L+ IR+T+ +M DRGY V E++ + EQF FG+ R DL +
Sbjct: 1 MNDEAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTM 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
+ +D +++ VFFP+E KV VKT+K Y +RM+ E + RAILVV+ LTP A+ I
Sbjct: 61 LLSHADDPKNRMLVFFPEEPKVAVKTIKAYAHRMEGEGIHRAILVVRDCLTPPAKQSIMA 120
Query: 117 ISAKFHLEVF 126
++ + +E F
Sbjct: 121 MAPLYIMEQF 130
>gi|297796715|ref|XP_002866242.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
gi|297312077|gb|EFH42501.1| hypothetical protein ARALYDRAFT_495901 [Arabidopsis lyrata subsp.
lyrata]
Length = 213
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 7/149 (4%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M+ D+EI RLF++RRTV+QMLRDRGY + + ++N+ +E+F+ +F + M + V +AL
Sbjct: 1 MSDLDDEITRLFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKPMNNMNKVNKEAL 60
Query: 61 ------RNDSSDQIYVFFPDEQKVGVKTMKTYTN-RMKSENVFRAILVVQQNLTPFARTC 113
+ +D+IYVF+P+ KVGV +K +M+ + V R I+VV +T AR
Sbjct: 61 FVAANKGPNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVPRGIVVVPMPITGPARMA 120
Query: 114 IQEISAKFHLEVFQVNVFSLMIYTCKLFN 142
I E++ +EVF+ I KL N
Sbjct: 121 ISELNKILTIEVFEEAELVTNITEHKLIN 149
>gi|302683883|ref|XP_003031622.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
gi|300105315|gb|EFI96719.1| hypothetical protein SCHCODRAFT_55942 [Schizophyllum commune H4-8]
Length = 210
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALR 61
D+E+ RL+++ RT+ ++++DRG+ V D+EIN+S + F +++ ++ R L R
Sbjct: 6 DDEVPRLWKVNRTIHELVKDRGFQVADYEINLSLDDFKSQYASQSRSVDRNQLNFFTNHR 65
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D++DQI+VFF DE+ VGVKTM+ ++ + + R I++ N+TP AR I + +++
Sbjct: 66 DDTTDQIFVFFSDERSVGVKTMRKLLGILEEKGIRRGIIIFPGNMTPAARKVIVAMQSQY 125
Query: 122 HLEVF 126
LE F
Sbjct: 126 RLEEF 130
>gi|156396586|ref|XP_001637474.1| predicted protein [Nematostella vectensis]
gi|156224586|gb|EDO45411.1| predicted protein [Nematostella vectensis]
Length = 207
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 79/122 (64%), Gaps = 8/122 (6%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKALRNDS 64
+ +RIR+TVMQ+ G + D E++ + EQF +FG+ R DL I A +D
Sbjct: 9 KFWRIRKTVMQVCN--GLILRD-ELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHNDDP 65
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQ +TP A+ + +++ K+ LE
Sbjct: 66 TDQMFVFFPEEPKVGIKTIKQYCQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILE 125
Query: 125 VF 126
F
Sbjct: 126 QF 127
>gi|449681257|ref|XP_002162780.2| PREDICTED: uncharacterized protein LOC100208454, partial [Hydra
magnipapillata]
Length = 383
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKALRNDSSDQIYVFFPDE 75
M DR Y V E++ + EQFI +FG+ + R D+ + A +D +DQ++VFFP+E
Sbjct: 1 MCHDRRYLVTQDELDQTLEQFIEQFGDRPSEGHPSRGDISVLVAHNDDPTDQMFVFFPEE 60
Query: 76 QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+KVG+KT+K Y RM+ E + RAI+VVQ +TP A+ + +++ K+ LE F
Sbjct: 61 EKVGIKTIKQYCTRMQEEGINRAIIVVQTGMTPSAKQALVDMAPKYILEQF 111
>gi|405118149|gb|AFR92924.1| DNA-directed RNA polymerase II 24 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 255
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE--NMKREDLVINKALR 61
++ E+ RL+R+ RTV +M+RDRGY + D+EIN+S E+F + G ++ R ++ +
Sbjct: 51 ANRELARLWRVSRTVHEMVRDRGYMLADYEINVSFEEFKDRHGATGSVDRSNMSFDAIHE 110
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D++D+I+V+F ++ V +MKT+ M R I++ + ++P A+ +QE+ +++
Sbjct: 111 SDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPAAKKTLQEMQSEY 170
Query: 122 HLEVF 126
HLE F
Sbjct: 171 HLEDF 175
>gi|328865416|gb|EGG13802.1| RapGAP/RanGAP domain-containing protein [Dictyostelium
fasciculatum]
Length = 1144
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF-GENMKREDLVINKALRNDS 64
+E RL+ IR+T++QML DRGY + + E+ ++KE F F N RE L + ++D+
Sbjct: 2 DEGTRLYHIRKTILQMLSDRGYMITNSELELTKEDFKKDFTAHNNSREHLNSSYNKKDDA 61
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVF-RAILVVQQNLTPFARTCIQEISAKFHL 123
+D+I+ FFP + KVGV ++ + ++MK + RAI++VQ NLT FA+ + E S +
Sbjct: 62 ADRIFTFFPADVKVGVTPIRKFVDQMKGPHGGNRAIIIVQSNLTAFAKQALSEFSQAKKI 121
Query: 124 EVFQVNVFSLMI 135
+ Q N L++
Sbjct: 122 VLEQFNEAELLV 133
>gi|58259413|ref|XP_567119.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134107497|ref|XP_777633.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260327|gb|EAL22986.1| hypothetical protein CNBA7540 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223256|gb|AAW41300.1| DNA-directed RNA polymerases ii 24 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 221
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 14/137 (10%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG-----ENMK-------- 50
++ E+ RL+R+ RTV +M+RDRGY + D+EIN+S E+F + G E MK
Sbjct: 5 ANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSS 64
Query: 51 -REDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPF 109
R ++ + ND++D+I+V+F ++ V +MKT+ M R I++ + ++P
Sbjct: 65 SRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPA 124
Query: 110 ARTCIQEISAKFHLEVF 126
A+ +QE+ +++HLE F
Sbjct: 125 AKKTLQEMQSEYHLEDF 141
>gi|328770744|gb|EGF80785.1| hypothetical protein BATDEDRAFT_88106 [Batrachochytrium
dendrobatidis JAM81]
Length = 207
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF--GENMKREDLVINKALRN 62
D E+ +L+R+ RT+ +M+ RGY V E+ MS + F + G + R+ L +
Sbjct: 4 DREVSKLWRVYRTIHEMVSHRGYLVSKAELEMSLDDFRYTYTKGGIIDRQGLTFLVQHSS 63
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+DQ+ VFF D+ VG+K +K RM S+++ + IL+ +++LTP A +QE++ K+
Sbjct: 64 SENDQLLVFFTDDDSVGIKPIKKICERMISQSIMKGILIYKKSLTPSANKVVQEMAPKYQ 123
Query: 123 LEVFQ 127
LE+FQ
Sbjct: 124 LELFQ 128
>gi|353236892|emb|CCA68877.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Piriformospora indica DSM 11827]
Length = 211
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQF---IAKFGENMKREDLVINKAL 60
+D + RL+++ RT+ +++RDRGY V D EINM+ ++F A+ G + R L L
Sbjct: 7 ADLAVSRLWKVNRTIHELVRDRGYAVADEEINMTLDEFKQQFARAGSVVDRASLGFWAHL 66
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
RND + IYV+F DE+ VGV+ MK + +N+ R I++ LTP AR + + +
Sbjct: 67 RNDPATSIYVYFCDERSVGVQHMKKLLGILDEKNIVRGIIIYPNVLTPAARKVLTGMP-Q 125
Query: 121 FHLEVF 126
+ LE F
Sbjct: 126 YQLEEF 131
>gi|409078308|gb|EKM78671.1| hypothetical protein AGABI1DRAFT_114282, partial [Agaricus bisporus
var. burnettii JB137-S8]
gi|426199299|gb|EKV49224.1| hypothetical protein AGABI2DRAFT_191302, partial [Agaricus bisporus
var. bisporus H97]
Length = 208
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINKALRN 62
+E +L+++ RT+ +++RDRG+ V D EI+M + F ++ N + R L R
Sbjct: 5 DETAKLWKVNRTIHELVRDRGFLVSDEEIHMDLQHFRDQYANNSGMVDRNQLNFYTTSRA 64
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ +DQI+V+F DE+ VGVKTM+ + ++ +++ R I+V N+TP AR I +SA++
Sbjct: 65 NPTDQIFVYFTDERSVGVKTMRKLLSILEEKSIQRGIIVFPGNMTPSARKVIVAMSAQYR 124
Query: 123 LEVF 126
LE F
Sbjct: 125 LEEF 128
>gi|330803783|ref|XP_003289882.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325080041|gb|EGC33614.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 196
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 8/130 (6%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+ RL +IR+TV+QML DRGY + + ++ R++L I ++D +
Sbjct: 2 EDPVRLTQIRKTVIQMLSDRGYITSAIDAEVPRD--------ITNRDELKIYCVKKDDPT 53
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+ +YVFFP+ KVGV +K Y MKS RAI+VVQQN+TPFA+ + EIS + +
Sbjct: 54 ESVYVFFPEVPKVGVTHIKKYVELMKSRQTNRAIIVVQQNITPFAKQALVEISQDKKIVL 113
Query: 126 FQVNVFSLMI 135
Q N L++
Sbjct: 114 EQFNEAELLV 123
>gi|380800089|gb|AFE71920.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Macaca mulatta]
Length = 181
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 33 EINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYT 87
E++ + E+F A+FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y
Sbjct: 3 ELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYC 62
Query: 88 NRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 63 QRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 101
>gi|281202322|gb|EFA76527.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 288
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 29/139 (20%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+E+ RL++I++T++QML DRGY + +++ SK++F F RED+ R D++
Sbjct: 2 DEVTRLYQIQKTILQMLHDRGYMITPVQLDQSKDEFRRNFKS---REDMNSIHTKREDAA 58
Query: 66 DQIYVFFPDEQKVGVKTMKT--------------------------YTNRMKSENVFRAI 99
D+I++FFP++ KVGVK +K Y RMK RAI
Sbjct: 59 DKIFIFFPNDPKVGVKPIKEVISTLIKPTNHLSIYLSTHNQTNTYRYVKRMKEIGGTRAI 118
Query: 100 LVVQQNLTPFARTCIQEIS 118
+VVQQ +TPFA+ + E S
Sbjct: 119 IVVQQVMTPFAKQALAEFS 137
>gi|331224607|ref|XP_003324975.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309303965|gb|EFP80556.1| DNA-directed RNA polymerase II subunit E [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 204
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
D E+ RL R+ RT+ +++RDRGY V D EIN+S ++F K + + + +N A N
Sbjct: 4 DREVSRLHRVNRTIKELVRDRGYEVSDAEINVSLDEF--KASDPISNKSTRLNFAAINPE 61
Query: 65 SDQ-IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
++Q IYV++ DE+ VG+KTM+ + + + + + IL+ Q +TP A I ++ +F L
Sbjct: 62 TNQGIYVYYSDEKSVGIKTMRKFISILDEKKLESGILIYSQAMTPSANKVIASMAQQFTL 121
Query: 124 EVFQ 127
E FQ
Sbjct: 122 EAFQ 125
>gi|393242192|gb|EJD49711.1| DNA-directed RNA polymerase I [Auricularia delicata TFB-10046 SS5]
Length = 209
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--MKREDLVINKALR 61
++EE+ RL+++ RT+ +M+RDRGY V + E NMS EQF A+ N + R L
Sbjct: 5 TEEELVRLWKVSRTIHEMVRDRGYQVSEEETNMSLEQFRAQHTTNGTVNRTTLTFFTHHA 64
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
D +DQ++VFF +++ V +KTM+ + + ++ + + R I+V +TP AR I +S +
Sbjct: 65 KDPNDQLFVFFCEDKNVSIKTMRKFLDVLQQKGIQRGIIVFSGTMTPSARKVITGMSQDY 124
Query: 122 HLEVF 126
LE F
Sbjct: 125 KLEEF 129
>gi|401882166|gb|EJT46437.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406701349|gb|EKD04497.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 195
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF--GENMKREDLVINKALR 61
SD E+ RL+R+ +TV +M+RDRGY V D+EINMS + F + G ++ R + +
Sbjct: 5 SDRELARLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANHS 64
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
DS D+IYVFF E+ V T K++ + + R ++V LT A E+ +++
Sbjct: 65 RDSRDRIYVFFCAEEAVSKATYKSFVTSLDAVGAKRGLIVHGGKLTSGAAKTQNEMQSEY 124
Query: 122 HLEVFQ 127
HLE F+
Sbjct: 125 HLEDFK 130
>gi|406699193|gb|EKD02404.1| DNA-directed RNA polymerases ii 24 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 211
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--MKREDLVINKALR 61
SD E+ RL+R+ +TV +M+RDRGY V D+EINMS + F +G + R + +
Sbjct: 5 SDRELARLWRVSKTVHEMIRDRGYEVADYEINMSFDDFKETYGGGGSVDRGRMAFHANHS 64
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
DS D+IYVFF E+ V T K++ + + R ++V LT A E+ +++
Sbjct: 65 RDSRDRIYVFFCAEEAVSKATYKSFVTSLDAVGAKRGLIVHGGKLTSGAAKTQNEMQSEY 124
Query: 122 HLEVFQ 127
HLE F+
Sbjct: 125 HLEDFK 130
>gi|336370755|gb|EGN99095.1| hypothetical protein SERLA73DRAFT_181909 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383518|gb|EGO24667.1| hypothetical protein SERLADRAFT_468322 [Serpula lacrymans var.
lacrymans S7.9]
Length = 206
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
++E +L+++ RT+ ++++DRG+ V D EI+M F + + G ++ R L R
Sbjct: 2 EDETAKLWKVNRTIHELVKDRGFAVSDDEIHMDLVTFRSHYANNGGSVDRNQLNFFTNSR 61
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ +DQI+VFF DE+ VGVKTM+ ++ +++ R I+V N+TP AR I ++A++
Sbjct: 62 TNPTDQIFVFFSDEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIAAMAAQY 121
Query: 122 HLEVF 126
LE F
Sbjct: 122 RLEEF 126
>gi|170098869|ref|XP_001880653.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644178|gb|EDR08428.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 208
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 80/128 (62%), Gaps = 4/128 (3%)
Query: 3 LSD-EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINK 58
+SD +E +L+++ RT+ ++++DRG+ V D EI+M ++F + + N + R L
Sbjct: 1 MSDVDETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYT 60
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
R +S+DQI+VFF +E+ VGVKTM+ ++ +++ R I+V N+TP AR I ++
Sbjct: 61 TSRTNSTDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIVAMA 120
Query: 119 AKFHLEVF 126
++ LE F
Sbjct: 121 QQYRLEEF 128
>gi|237834761|ref|XP_002366678.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|211964342|gb|EEA99537.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Toxoplasma gondii ME49]
gi|221486036|gb|EEE24306.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
GT1]
gi|221503532|gb|EEE29223.1| DNA-directed RNA polymerase II 23 kDa, putative [Toxoplasma gondii
VEG]
Length = 205
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-MKREDLVINKALRND 63
++ +RLFR R+T ML+DRGY V E N S F+ +F EN R +++ + + D
Sbjct: 2 EDSTRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVD 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+++ V+F DE +K GVK ++ T RM+ N+ RAILV Q LT FAR I E + +
Sbjct: 62 PDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|402589264|gb|EJW83196.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 191
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVINKALRNDSSDQIYVFFPDE 75
M DRGY V E++ + E F FG+ + R +L + A +D +DQ++VFFP++
Sbjct: 1 MCHDRGYLVTQEELDQTLENFKETFGDKPSERHPSRNELTVLVAHNDDPTDQMFVFFPED 60
Query: 76 QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
K+G+KT+K +M+ + + RAI+VVQ +TP A+ I +++ K+ LE F
Sbjct: 61 SKIGIKTIKAICQQMQEQAITRAIIVVQTGMTPSAKQAIADMAPKYTLEQF 111
>gi|66802850|ref|XP_635268.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|60463617|gb|EAL61802.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 181
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGV 80
ML DR Y + +E +E F++ RE+L + ++D +D IYVFFPD KVGV
Sbjct: 1 MLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53
Query: 81 KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQVNVFSLMI 135
+K Y + MK RAI+VVQQN+TPFA+ + E S + + + Q N L++
Sbjct: 54 TQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLV 108
>gi|291000790|ref|XP_002682962.1| predicted protein [Naegleria gruberi]
gi|284096590|gb|EFC50218.1| predicted protein [Naegleria gruberi]
Length = 229
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 23/150 (15%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN------------ 48
M ++ E RL+RIR+TV+QML RGY V + E NM +F +KFG
Sbjct: 1 MNNANSESYRLWRIRKTVLQMLDARGYMVLESEKNMDLAEFESKFGTGPNNVSQSGQARG 60
Query: 49 ---MKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVV--- 102
+ R+ L I ++ +D S+ I+VFFP + +G+K +K Y ++MK NV RAILV+
Sbjct: 61 YTTIGRDRLSIVTSMADDPSEMIFVFFPATKAIGMKQIKDYHSKMKDNNVKRAILVLRPA 120
Query: 103 ----QQNLTPFARTCIQEISA-KFHLEVFQ 127
Q++L+ A+ I+ + A + LE F+
Sbjct: 121 DSFQQKDLSSQAKRAIEALQAIGYILETFK 150
>gi|294880824|ref|XP_002769160.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239872330|gb|EER01878.1| DNA-directed RNA polymerases II 24 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 168
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Query: 34 INMSKEQFIAKFGENMKRE----DLVINKALRNDSSDQIYVFFPDEQK-VGVKTMKTYTN 88
+N +KE F ++ E +R+ DL+I + ++D SDQ+ VFFPDE K VGVK ++T
Sbjct: 2 LNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLAL 61
Query: 89 RMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+M+ + + RAILVVQQ LT FA+T IQE S + +EVF
Sbjct: 62 KMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVF 99
>gi|388583908|gb|EIM24209.1| RPB5 subunit of DNA-directed RNA polymerase [Wallemia sebi CBS
633.66]
Length = 207
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 77/136 (56%), Gaps = 8/136 (5%)
Query: 3 LSDEE-IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--MKREDLVINKA 59
+ DE+ I +L+++ RT +M++DRG+ V EI + +F + N + R L +
Sbjct: 1 MEDEKLISKLWKVSRTAHEMVQDRGFAVSQQEIEIPYAEFKETYAGNGIIDRASLHFFAS 60
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
L ++ DQI+VFF DE +G+KTM+ + ++ + R IL+ + LTP A I E++A
Sbjct: 61 LEDNPDDQIFVFFADEPSIGIKTMRKFLTVLEERKIGRGILIYPEKLTPAANKVIAEMAA 120
Query: 120 KFHLEVF-----QVNV 130
+ L+ F QVN+
Sbjct: 121 DYKLQAFTESELQVNI 136
>gi|413952169|gb|AFW84818.1| hypothetical protein ZEAMMB73_052663 [Zea mays]
Length = 134
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 3 LSDEE-IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR 61
++DE + RL+RIRRTVMQMLRDRGY V D E+ S+ F+ KFGE+ REDL+INK +
Sbjct: 6 VTDEATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKK 65
Query: 62 NDSSDQI 68
ND SDQ+
Sbjct: 66 NDPSDQV 72
>gi|221057466|ref|XP_002261241.1| DNA-directed RNA polymerase 2 [Plasmodium knowlesi strain H]
gi|194247246|emb|CAQ40646.1| DNA-directed RNA polymerase 2, putative [Plasmodium knowlesi strain
H]
Length = 205
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ I R ++ R+T +ML DRGY + E + F +F EN K R + I + +ND
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S++I V+F DE +K GVK ++ T +M +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 ESNKIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|84997627|ref|XP_953535.1| DNA-directed RNA polymerase, subunit (RPB5 homologue) [Theileria
annulata strain Ankara]
gi|65304531|emb|CAI76910.1| DNA-directed RNA polymerase, subunit (RPB5 homologue), putative
[Theileria annulata]
Length = 205
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ E + +F A++ K R +++ +LR
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTA 61
Query: 64 SSDQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ +++ V+F DE+K GVK ++ T RM+ ++ RAILV Q LTPFA+ I E K
Sbjct: 62 AENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|389584405|dbj|GAB67137.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium
cynomolgi strain B]
Length = 205
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ I R ++ R+T +ML DRGY + E + F +F EN K R + I + +ND
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
++++I V+F DE +K GVK ++ T +M +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|156101473|ref|XP_001616430.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Plasmodium vivax
Sal-1]
gi|148805304|gb|EDL46703.1| DNA-directed RNA polymerase II 23 kDa polypeptide, putative
[Plasmodium vivax]
Length = 205
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ I R ++ R+T +ML DRGY + E + F +F EN K R + I + +ND
Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
++++I V+F DE +K GVK ++ T +M +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|390594286|gb|EIN03698.1| DNA-directed RNA polymerase RPB5 subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 208
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQF---IAKFGENMKREDLVIN 57
M +DE K L+++ RT+ ++++DRG+ V D EI M F A G ++ R L
Sbjct: 1 MADADESAK-LWKVNRTIHELVKDRGFQVSDDEIQMDLATFRQAYANNGGSVDRNQLNFF 59
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
R + +DQI+VFF +E+ VGVKTM+ ++ +++ R I++ N+TP AR I +
Sbjct: 60 TNSRANPADQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIIFPGNMTPSARKVIVAM 119
Query: 118 SAKFHLEVF 126
SA+F LE F
Sbjct: 120 SAQFRLEEF 128
>gi|71029810|ref|XP_764548.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68351502|gb|EAN32265.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 205
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ E + +F A++ + K R +++ + R
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTA 61
Query: 64 SSDQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S +++ V+F DE+K GVK ++ T RM+ ++ RAILV Q LTPFA+ I E K
Sbjct: 62 SENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|71019505|ref|XP_759983.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
gi|46099489|gb|EAK84722.1| hypothetical protein UM03836.1 [Ustilago maydis 521]
Length = 554
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
D E RL+R+ RT+ +++RDRGY V D EI++ E F A++ G ++ R L
Sbjct: 4 DRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHG 63
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ +++VF+ ++ VGVKTM+ + + M+ ++ R I++ + +T AR I + F
Sbjct: 64 EHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123
Query: 122 HLEVFQ 127
HLE F+
Sbjct: 124 HLEDFE 129
>gi|449273017|gb|EMC82646.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1, partial
[Columba livia]
Length = 168
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 40 QFIAKFGEN-MKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA 98
QF K E +R DL + A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA
Sbjct: 1 QFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRA 60
Query: 99 ILVVQQNLTPFARTCIQEISAKFHLEVF 126
++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 61 LIVVQQGMTPSAKQSLVDMAPKYILEQF 88
>gi|299749820|ref|XP_001836357.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
gi|298408613|gb|EAU85541.2| DNA-directed RNA polymerase I [Coprinopsis cinerea okayama7#130]
Length = 208
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---REDLVINKALRN 62
+E RL+++ +T+ ++++DRG+ V D EINMS E+F +G NM R L R
Sbjct: 5 DETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRL 64
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ SDQI+V+F +E VGVK M+ M+ + + R I++ +T AR I +++ +
Sbjct: 65 NPSDQIFVYFTEEPNVGVKAMRKLLGIMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 124
Query: 123 LEVF 126
LE F
Sbjct: 125 LEEF 128
>gi|156089419|ref|XP_001612116.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
gi|154799370|gb|EDO08548.1| RNA polymerase Rpb5, N-terminal domain containing protein [Babesia
bovis]
Length = 205
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG-ENMKREDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ + E + +F A++ + R +++ +L+ D
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYELYDRVRSKMLLVASLKTD 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
++ V+F DE +K GVK ++ T +M+ ++ RAILV Q LTPFA+ I E + +
Sbjct: 62 KDAKLLVYFADETKKTGVKPIRELTEKMEDHDIHRAILVTQNVLTPFAKDAILEAAPRNI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|403418276|emb|CCM04976.1| predicted protein [Fibroporia radiculosa]
Length = 207
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 4/124 (3%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVINKALRN 62
+E RL+++ RT+ ++++DRG+ V D EINM F + + N+ R L +N
Sbjct: 5 DESARLWKVNRTIHELVKDRGFQVSDDEINMDLATFRSHYASNLGSVDRSQLNFFTNHKN 64
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ QI+VFF DE+ VGVKTM+ ++ +N+ + I+V N+TP AR I ++ F
Sbjct: 65 NPMTQIFVFFSDEKSVGVKTMRKMLTILEEKNIMQGIIVFPGNMTPSARKVISAMT-NFA 123
Query: 123 LEVF 126
LE F
Sbjct: 124 LEEF 127
>gi|429329987|gb|AFZ81746.1| DNA-directed RNA polymerase, putative [Babesia equi]
Length = 205
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-NMKREDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ E + +F A++ + R +++ + +
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYESYDRTRSKMLLVASQKTA 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S +++ VFF DE +K GVK ++ T RM+ ++ RAILV Q LT FA+ I E S +
Sbjct: 62 SENKVLVFFADETKKTGVKPIRELTERMEDHDIHRAILVTQNVLTSFAKDAIMEASPRNI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|343424911|emb|CBQ68449.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Sporisorium reilianum SRZ2]
Length = 208
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
D E RL+R+ RT+ +++RDRGY V D EIN+ E F A++ G + R L
Sbjct: 4 DRETVRLWRVNRTIHELVRDRGYQVADDEINVDLETFKAEYAPTGGAVDRTKLNFFTEHS 63
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
++ +++VF+ E+ VGVKTM+ + + M+ ++ R I++ + +T AR I + F
Sbjct: 64 EHANQRLFVFYSMERNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123
Query: 122 HLEVFQ 127
HLE F+
Sbjct: 124 HLEDFE 129
>gi|395332226|gb|EJF64605.1| RPB5 subunit of DNA-directed RNA polymerase [Dichomitus squalens
LYAD-421 SS1]
Length = 211
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALRN 62
EE RL+++ RT+ ++++DRG+ V D EINM F + + + R L R+
Sbjct: 8 EESARLWKVNRTIHELVKDRGFQVADDEINMDLATFRSHYASQSGTVDRSQLNFFTNHRD 67
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ QI++FF DE+ VGVKTM+ ++ +N+ + I+V N+TP AR I +++++
Sbjct: 68 NPMLQIFIFFTDEKSVGVKTMRKLLGILEEKNIQQGIIVFPGNMTPSARKVIVAMASQYK 127
Query: 123 LEVF 126
LE F
Sbjct: 128 LEEF 131
>gi|388855814|emb|CCF50598.1| probable 25 kD subunit of DNA-directed RNA polymerases I, II and
III [Ustilago hordei]
Length = 236
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
D E RL+R+ RT+ +++RDRGY V D EIN+ E F +++ G ++ R L
Sbjct: 4 DRETVRLWRVNRTIHELVRDRGYQVADDEINIDLETFKSEYAPTGGSVDRTKLNFFTEHS 63
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ +++VF+ E+ VGVKTM+ + + M+ ++ R I++ + +T AR I + F
Sbjct: 64 EHENQRLFVFYSMERNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123
Query: 122 HLEVFQ 127
HLE F+
Sbjct: 124 HLEDFE 129
>gi|124514006|ref|XP_001350359.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
gi|23615776|emb|CAD52768.1| DNA-directed RNA polymerase 2, putative [Plasmodium falciparum 3D7]
Length = 205
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-MKREDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F +N +R + I+ +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S+++I V+F DE +K GVK ++ T RM+ +++ RAILV Q LTPFAR I+E + +
Sbjct: 62 SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|399218319|emb|CCF75206.1| unnamed protein product [Babesia microti strain RI]
Length = 212
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 78/137 (56%), Gaps = 18/137 (13%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVIN 57
+ D E+ RLFR RRT +ML DRGYF+ E K + +++F + R +++
Sbjct: 1 MEDAEV-RLFRCRRTCCEMLEDRGYFIPIQE----KLEILSEFKSRYEMYDKIRSKMLLV 55
Query: 58 KALRNDSSDQIYVFFPDE-QKVGVK-------TMKTYTNRMKSENVFRAILVVQQNLTPF 109
++RND +D+I V+F DE +K GVK +++ T RM+ + RAILV Q LTPF
Sbjct: 56 ASMRNDPNDKIIVYFADETKKTGVKPIRELVPSLRRLTERMEDHGIHRAILVTQNVLTPF 115
Query: 110 ARTCIQEISAKFHLEVF 126
A+ I E + + +E F
Sbjct: 116 AKEAISEAAPRNIIENF 132
>gi|409048291|gb|EKM57769.1| hypothetical protein PHACADRAFT_251606 [Phanerochaete carnosa
HHB-10118-sp]
Length = 208
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVINKALRN 62
+E +L+++ RT+ +++RDRG+ V D EI+M F + + M R L +N
Sbjct: 5 DETAKLWKVNRTIHELVRDRGFQVSDDEIHMDLATFRSLYANQMGSVDRSQLNFFTNHQN 64
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ +QI+ FF DE+ VGVKTM+ N ++ +N+ R I+V +TP AR I +++++
Sbjct: 65 NPMEQIFTFFSDEKSVGVKTMRKILNILEEKNIQRGIIVFPGIMTPSARKVIVAMASQYK 124
Query: 123 LEVF 126
LE F
Sbjct: 125 LEEF 128
>gi|443896772|dbj|GAC74115.1| hypothetical protein PANT_10d00023 [Pseudozyma antarctica T-34]
Length = 283
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALR 61
D E RL+R+ +T+ +++RDRGY V D EIN+ E F A++ G ++ R L
Sbjct: 79 DRETVRLWRVNKTIHELVRDRGYQVADDEINIDLESFKAEYAPTGGSVDRTKLNFFTEHS 138
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ +++VF+ E+ VGVKTM+ + + M+ ++ R I++ +T AR I + F
Sbjct: 139 AHENQRLFVFYSMERNVGVKTMRQFISIMEERDIQRGIIIWPDKMTSAARKVIDAMRGTF 198
Query: 122 HLEVFQ 127
HLE F+
Sbjct: 199 HLEDFE 204
>gi|19114099|ref|NP_593187.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe 972h-]
gi|2500628|sp|Q09191.1|RPAB1_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=RPC24B
gi|256599719|pdb|3H0G|E Chain E, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599731|pdb|3H0G|Q Chain Q, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|1345439|dbj|BAA07843.1| RNA polymerase II 5th largest subunit [Schizosaccharomyces pombe]
gi|2465157|emb|CAB16886.1| DNA-directed RNA polymerase I, II and III subunit Rpb5
[Schizosaccharomyces pombe]
gi|2708526|gb|AAB92515.1| Rpb5 [Schizosaccharomyces pombe]
Length = 210
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIA---KFGENMKREDLVIN 57
M+ ++ I R+FR +T Q++ DRGY V E++++ +QF A G N+ R L
Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60
Query: 58 KALRNDSS-DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
NDS+ IY+ F E VG+K M+T+ + + N IL+ ++TP A I
Sbjct: 61 AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIAT 120
Query: 117 ISAKFHLEVFQ 127
++ +F +E FQ
Sbjct: 121 VTGQFTIETFQ 131
>gi|384497180|gb|EIE87671.1| hypothetical protein RO3G_12382 [Rhizopus delemar RA 99-880]
Length = 140
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGE--NMKREDLVINKALRNDSSDQIYVFFPDEQKV 78
M+ DRGY V E++M E F F ++ R+ L ++D +DQ+ VFFP + V
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFAPSGDVDRDQLTFVVQKKDDPTDQLLVFFPKDPSV 60
Query: 79 GVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQVN 129
GVK ++ Y RM + + + I + Q+++T A IQ++ +K LE FQ N
Sbjct: 61 GVKPLRVYVERMAQQQIPKGICIYQKSMTSSANKVIQQLPSKHTLESFQEN 111
>gi|384497437|gb|EIE87928.1| hypothetical protein RO3G_12639 [Rhizopus delemar RA 99-880]
Length = 188
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGE--NMKREDLVINKALRNDSSDQIYVFFPDEQKV 78
M+ DRGY V E++M E F F ++ R+ L ++D +DQ+ VFFP + V
Sbjct: 1 MVHDRGYLVSQSELDMDLESFKRTFAPSGDVDRDQLTFVVQKKDDPTDQLLVFFPKDPSV 60
Query: 79 GVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQVN 129
GVK ++ Y RM + + + I + Q+++T A IQ++ +K LE FQ N
Sbjct: 61 GVKPLRVYVERMAQQQIPKGICIYQKSMTSSANKVIQQLPSKHTLESFQEN 111
>gi|346703190|emb|CBX25289.1| hypothetical_protein [Oryza brachyantha]
Length = 288
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E KRLF RRT ++MLRDRGY V + EI + +F A +GE + E L L +D S
Sbjct: 90 ESKRLFLARRTALEMLRDRGYSVPEEEIARTLPEFRAWWGEKSEIERLAFTTTLVSDPSK 149
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + + EN+ R IL++Q + AR I+EI K +++F
Sbjct: 150 KVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSRARESIKEI-FKLKVDIF 208
Query: 127 QVN 129
QV
Sbjct: 209 QVT 211
>gi|346703279|emb|CBX25377.1| hypothetical_protein [Oryza brachyantha]
Length = 226
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E KRLF RRT ++MLRDRGY V D EI + +F A +GE + E L L +D S
Sbjct: 30 ESKRLFLARRTALEMLRDRGYSVPDEEIARTLPEFRAWWGEKSEIERLAFTTTLVSDPSK 89
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + + EN+ R IL++Q + AR I+EI K +++F
Sbjct: 90 KVQIVFCPPEPVKIATIREIYRQTEGENLSRLILILQSRILSRARESIKEI-FKLKVDIF 148
Query: 127 Q 127
Q
Sbjct: 149 Q 149
>gi|320168277|gb|EFW45176.1| DNA-directed RNA polymerase 2 [Capsaspora owczarzaki ATCC 30864]
Length = 211
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF--GENMK--REDLVINKALR 61
+ ++R++RI +TVMQM DR Y V E+ + E F AK G ++ RE ++ N A +
Sbjct: 7 QHLQRMYRIYQTVMQMCHDRHYIVTADELEQNLETFRAKVCTGNDLTPVRERMLCNFAYK 66
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D + I V F E KVGV ++ +M ++++ R I+VVQ LT FAR+ + E +F
Sbjct: 67 DDPTKSILVMFATEVKVGVAPIRQMIEQMSTQSIQRGIIVVQDCLTSFARSTLAEAMPQF 126
Query: 122 HLEVFQ 127
+E F+
Sbjct: 127 IIEEFK 132
>gi|449543190|gb|EMD34167.1| hypothetical protein CERSUDRAFT_141708, partial [Ceriporiopsis
subvermispora B]
Length = 208
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
++ +L+++ RT+ ++++DRG+ V D EINM F + + N D N +S
Sbjct: 5 DDSAKLWKVNRTIHELVKDRGFQVSDDEINMDLATFRSHYANNSGSVDRSQLNFFTNHTS 64
Query: 66 D---QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ QI+VFF DE+ VGVKTM+ ++ +N+ + ++V N+TP AR I +++++
Sbjct: 65 NPLVQIFVFFSDEKSVGVKTMRKLLGILEEKNIQQGVIVFPGNMTPSARKVIVAMASQYK 124
Query: 123 LEVF 126
LE F
Sbjct: 125 LEEF 128
>gi|392564185|gb|EIW57363.1| DNA-directed RNA polymerase RPB5 subunit [Trametes versicolor
FP-101664 SS1]
Length = 209
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVIN 57
M+ +E +L+++ RT+ ++++DRG+ V D EINM F + ++ R L
Sbjct: 1 MSADQDESAKLWKVNRTIHELVKDRGFQVSDDEINMDLSTFRDHYANQSGSVDRSQLNFF 60
Query: 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
R++ S QI++FF DE+ VGVKTM+ ++ + + + I+V N+TP AR I +
Sbjct: 61 TNHRDNPSVQIFIFFTDEKSVGVKTMRKLLGILEEKAIQQGIIVFPGNMTPSARKVIVAM 120
Query: 118 SAKFHLEVF 126
++ + LE F
Sbjct: 121 ASTYKLEEF 129
>gi|156848515|ref|XP_001647139.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156117823|gb|EDO19281.1| hypothetical protein Kpol_1036p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 215
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ I RL+R RTV +M+RDRGYF+ EI++S E F AK+ ++M R + N
Sbjct: 5 SERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMGRPQRKMMSFQANP 64
Query: 64 SSD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + ++V F DE VGVKTMK + ++ +N I V Q N+TP A +
Sbjct: 65 TEETMEKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMKLV 124
Query: 115 QEISAK----FHLEVFQVNV 130
I FH VN+
Sbjct: 125 PSIPPATIETFHEASLIVNI 144
>gi|410081459|ref|XP_003958309.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
gi|372464897|emb|CCF59174.1| hypothetical protein KAFR_0G01400 [Kazachstania africana CBS 2517]
Length = 215
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED--LVINKALRND-- 63
I+RL+R +TV +M++DRGYFV D EI++S E F AK+ ++M R ++ +A ND
Sbjct: 9 IRRLWRTFKTVKEMVKDRGYFVNDEEIDLSLEDFKAKYSDSMGRPQRKMMSFQANPNDEF 68
Query: 64 -----SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
++V F DE VGVKTMK + ++ +N I + Q N+TP A + I
Sbjct: 69 LAKFPDLGSLWVEFCDEPSVGVKTMKNFVVHIQEKNYSTGIFIYQNNVTPSAMKLVPSIP 128
Query: 119 AKFHLEVFQ 127
+E FQ
Sbjct: 129 PA-TIETFQ 136
>gi|403223518|dbj|BAM41648.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 205
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
D+E RLFR RRT +ML DRGYF+ E + +F A++ K R +++ + +
Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPGKERLETFAEFKARYELYDKMRSKMLLVASQKTA 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S +++ V+F DE +K GVK ++ T RM+ ++ RAILV + LTPFA+ I E +
Sbjct: 62 SDNKLLVYFADETRKTGVKPIRELTERMEDHDIHRAILVTRNVLTPFAKDAIMEAYPRNI 121
Query: 123 LEVF 126
+E F
Sbjct: 122 IENF 125
>gi|197259982|gb|ACH56539.1| RNA polymerase II [Scophthalmus maximus]
Length = 87
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%), Gaps = 5/84 (5%)
Query: 33 EINMSKEQFIAKFGENM-----KREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYT 87
E++ + ++F ++FG+ +R DL + A +D +DQ++VFFP+E KVG+KT+K Y
Sbjct: 3 ELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYC 62
Query: 88 NRMKSENVFRAILVVQQNLTPFAR 111
RM+ EN+ RAI+VVQ +TP A+
Sbjct: 63 QRMQEENITRAIIVVQMGMTPSAK 86
>gi|213405090|ref|XP_002173317.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212001364|gb|EEB07024.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 211
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 1 MTLSDEE-IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIA---KFGENMKREDLVI 56
M+ S+E I ++FR+ +TV Q++ DRGY V E+ ++ +QF A G N+ R L
Sbjct: 1 MSSSEERNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSF 60
Query: 57 -NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
K IYV F E VG+K M+T+ + + N IL+ N+TP A I
Sbjct: 61 YAKPPPGSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANNMTPSATKIIS 120
Query: 116 EISAKFHLEVFQ 127
++ +F +E FQ
Sbjct: 121 TVTGQFTIETFQ 132
>gi|389742519|gb|EIM83705.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum FP-91666
SS1]
Length = 209
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINK 58
+ D E L+++ RT+ ++++DRGY V D EI+M F + + G ++ R L
Sbjct: 3 SADDSEAATLWKVNRTIHELVKDRGYQVADDEIHMDLTTFKSHYANSGGSVDRNQLNFFT 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
LR + + I+VFF DE+ VGVKTM+ M +N+ R I++ +TP AR I +
Sbjct: 63 NLRVNVEEHIFVFFSDEKSVGVKTMRKLLQIMTEKNIRRGIIIFPGIMTPAARKVIVSM- 121
Query: 119 AKFHLEVF 126
A+F +E F
Sbjct: 122 AEFKVEEF 129
>gi|357155279|ref|XP_003577067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Brachypodium distachyon]
Length = 270
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
+ E+ LF RRT ++MLRDRGY V + E+ + +F A + E + L + +D
Sbjct: 69 ASHEVHSLFLARRTALEMLRDRGYSVPEPELARTLTEFRAWWAEKPEMRRLSFSATFASD 128
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
S+++ F + V + T++ ++++ EN+ R IL++Q ++T AR CI+EI F +
Sbjct: 129 HSNKVQFVFCPPKPVNITTIREVYSQIEEENLSRLILILQGDITSKARDCIKEI-FPFKV 187
Query: 124 EVFQVN 129
++FQV
Sbjct: 188 DIFQVT 193
>gi|326520990|dbj|BAJ92858.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531658|dbj|BAJ97833.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E +RLF RRT ++MLRDRGY V + E+ + +F A + E + E L + L +D S
Sbjct: 53 ESQRLFLARRTALEMLRDRGYSVPEDELARTLPEFRAWWSETPEIERLSFSTTLASDPSS 112
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + ++ R+K EN+ IL++Q +T AR I+EI KF ++VF
Sbjct: 113 KVRIVFCPPEPVKIAAIREVHLRIKEENLSCLILILQSKITARARESIKEI-FKFKVDVF 171
Query: 127 QVN 129
Q+
Sbjct: 172 QIT 174
>gi|125533361|gb|EAY79909.1| hypothetical protein OsI_35073 [Oryza sativa Indica Group]
Length = 227
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
Query: 127 QVN 129
Q
Sbjct: 148 QAT 150
>gi|365982519|ref|XP_003668093.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
gi|343766859|emb|CCD22850.1| hypothetical protein NDAI_0A06960 [Naumovozyma dairenensis CBS 421]
Length = 215
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 69/136 (50%), Gaps = 13/136 (9%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M+RDRGYF+ E+++S E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEES 68
Query: 68 IYVF---------FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I F F DE+ VGVKTMK + ++ +N I V Q N+TP A + I
Sbjct: 69 IAKFPDMGSLWAEFCDEESVGVKTMKNFVIHIQEKNFQTGIFVYQTNVTPSAMKLVPSIP 128
Query: 119 AK----FHLEVFQVNV 130
FH VN+
Sbjct: 129 PATIETFHEASLVVNI 144
>gi|108862173|gb|ABA96407.2| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 335
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 137 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 196
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 197 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 255
Query: 127 QVN 129
Q
Sbjct: 256 QAT 258
>gi|393221284|gb|EJD06769.1| RPB5 subunit of DNA-directed RNA polymerase [Fomitiporia
mediterranea MF3/22]
Length = 212
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 74/125 (59%), Gaps = 5/125 (4%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMS----KEQFIAKFGENMKREDLVINKALR 61
+E RL+R+ RT+ ++++DRG+ V D EI + K+QF G ++ R L
Sbjct: 9 DEAARLWRVNRTIHELIKDRGFQVSDEEIEVDLVTFKQQFANSSG-SVDRNQLNFFATHE 67
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D SD I+++F D++ VG+KTM+ ++ +++ + I++ +TP AR I ++S ++
Sbjct: 68 SDPSDHIFIYFSDQKSVGIKTMQKVCIILEEKSINKGIVIFPGTMTPSARKFIVQMSVRY 127
Query: 122 HLEVF 126
LE F
Sbjct: 128 RLEEF 132
>gi|115487264|ref|NP_001066119.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|113648626|dbj|BAF29138.1| Os12g0139500 [Oryza sativa Japonica Group]
gi|125535725|gb|EAY82213.1| hypothetical protein OsI_37416 [Oryza sativa Indica Group]
gi|125578454|gb|EAZ19600.1| hypothetical protein OsJ_35178 [Oryza sativa Japonica Group]
gi|346703760|emb|CBX24428.1| hypothetical_protein [Oryza glaberrima]
Length = 227
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
Query: 127 QVN 129
Q
Sbjct: 148 QAT 150
>gi|115484123|ref|NP_001065723.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|77548620|gb|ABA91417.1| RNA polymerase Rpb5, N-terminal domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113644427|dbj|BAF27568.1| Os11g0143400 [Oryza sativa Japonica Group]
gi|125576186|gb|EAZ17408.1| hypothetical protein OsJ_32930 [Oryza sativa Japonica Group]
Length = 227
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 29 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 89 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFKVDIF 147
Query: 127 QVN 129
Q
Sbjct: 148 QAT 150
>gi|346703375|emb|CBX25472.1| hypothetical_protein [Oryza glaberrima]
Length = 206
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT M+MLRDRGY V + EI + +F A + E E L L +D S
Sbjct: 8 ESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLAFTTTLVSDPSK 67
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ + F + V + T++ + K EN+ R +L++Q + AR I+EI KF +++F
Sbjct: 68 KVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEI-FKFKVDIF 126
Query: 127 QVN 129
Q
Sbjct: 127 QAT 129
>gi|340386044|ref|XP_003391518.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like, partial [Amphimedon queenslandica]
Length = 88
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Query: 3 LSDEEIK-RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLVI 56
+ +EE+ RL+RIR+TVMQM DR Y V E++ + +QF +FGE + R DL I
Sbjct: 1 MDNEEVTYRLWRIRKTVMQMCHDRRYLVTQDELDQTLDQFKEQFGERPNDGHPSRNDLSI 60
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMK 84
A +D +DQ++VFFP++ KVG+KT+K
Sbjct: 61 LVAHNDDPTDQMFVFFPEDPKVGIKTIK 88
>gi|392594893|gb|EIW84217.1| RPB5 subunit of DNA-directed RNA polymerase [Coniophora puteana
RWD-64-598 SS2]
Length = 207
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKA 59
++++E +L+++ RTV ++++DRGY V D EI+M F + + G ++ R L
Sbjct: 1 MAEDETAKLWKVNRTVHELVKDRGYQVSDDEIHMDFATFKSHYANNGGSVDRNQLNFFTN 60
Query: 60 LRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISA 119
+ + ++QI+++F DE+ VG+KTM+ ++ +++ RAI++ +T AR I +++
Sbjct: 61 SQENPTEQIFIYFSDERSVGIKTMRKLIAILEEKSIQRAIIIFPGAMTGAARKVIVAMAS 120
Query: 120 KFHLEVF 126
++ +E F
Sbjct: 121 QYRIEEF 127
>gi|254578454|ref|XP_002495213.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
gi|238938103|emb|CAR26280.1| ZYRO0B06006p [Zygosaccharomyces rouxii]
Length = 215
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R +TV +M++DRGYF+ EI + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMGRPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 IAKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNVTPSAMKLVPSIP 128
Query: 119 AK----FHLEVFQVNV 130
FH VN+
Sbjct: 129 PATIETFHEASLVVNI 144
>gi|241696177|ref|XP_002411834.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
gi|215504757|gb|EEC14251.1| RNA polymerase, 25-kDa subunit, putative [Ixodes scapularis]
Length = 91
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 46/59 (77%)
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++VFFPDE K+G+KT+KTY RM+ EN+ RAI+VVQQ +TP A+ + +++ K+ LE F
Sbjct: 1 MFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHF 59
>gi|367013608|ref|XP_003681304.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
gi|359748964|emb|CCE92093.1| hypothetical protein TDEL_0D05090 [Torulaspora delbrueckii]
Length = 215
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RT+ +M++DRGYF+ EI +S E F K+ ++M R + N + +
Sbjct: 9 ISRLWRTFRTMKEMVKDRGYFIAQEEIELSLEDFKVKYCDSMGRPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ITKFPNLGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 AK----FHLEVFQVNV 130
FH VN+
Sbjct: 129 PATIETFHEASLVVNI 144
>gi|392576849|gb|EIW69979.1| hypothetical protein TREMEDRAFT_29545 [Tremella mesenterica DSM
1558]
Length = 218
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 17/136 (12%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN----MKREDLVINKAL 60
D E+ RL+R+ RTV +M+RDRGY V ++EI S E F G + MK+E L++N
Sbjct: 6 DRELARLWRVSRTVHEMVRDRGYLVAEYEIEQSFEDFKDAHGSSGVVEMKKE-LIVNS-- 62
Query: 61 RND----------SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA 110
RN+ + D++ V+F E+ V ++K + +M+ + + IL+ + A
Sbjct: 63 RNNMHFTCDHSERTGDRLLVWFCPERNVPKSSIKIFLGQMEHRSANKGILIHPDKMGSAA 122
Query: 111 RTCIQEISAKFHLEVF 126
+ E+ A++HLE F
Sbjct: 123 NKAMMEMQAEYHLESF 138
>gi|50290313|ref|XP_447588.1| hypothetical protein [Candida glabrata CBS 138]
gi|54036350|sp|Q6FQA6.1|RPAB1_CANGA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49526898|emb|CAG60525.1| unnamed protein product [Candida glabrata]
Length = 215
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
+D I RL+R RTV +M+RDRGYF+ E++++ E F K+ ++M R + N
Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64
Query: 64 SSDQ---------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + ++V F DE VGVKTMKT+ ++ + I + Q N+TP A +
Sbjct: 65 TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124
Query: 115 QEISAK----FHLEVFQVNV 130
I FH VN+
Sbjct: 125 PSIPPATIETFHEAALVVNI 144
>gi|397611881|gb|EJK61509.1| hypothetical protein THAOC_17988 [Thalassiosira oceanica]
Length = 581
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 50/66 (75%)
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+D ++Q++VFFP+++KVGVK +K T+RMK E V AILV++ N+TPFA+ + E+S F
Sbjct: 437 DDDTNQLFVFFPEDEKVGVKPIKILTDRMKDEQVTNAILVLRGNITPFAKQAVAEMSDTF 496
Query: 122 HLEVFQ 127
+E F+
Sbjct: 497 RIEHFK 502
>gi|366996969|ref|XP_003678247.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
gi|342304118|emb|CCC71905.1| hypothetical protein NCAS_0I02370 [Naumovozyma castellii CBS 4309]
Length = 215
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M+RDRGYF+ E+++S E F K+ ++M R + N + +
Sbjct: 9 ISRLWRTFRTVKEMVRDRGYFITQEEVDLSLEDFKTKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 IYVF---------FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I F F DE VGVKTMK++ ++ +N I V Q N+TP A + I
Sbjct: 69 IAKFPSMGSLWAEFCDEPSVGVKTMKSFVIHIQEKNFQTGIFVFQTNVTPSAMKLVPSIP 128
Query: 119 AK----FHLEVFQVNV 130
FH VN+
Sbjct: 129 PATIETFHEASLVVNI 144
>gi|444321044|ref|XP_004181178.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
gi|387514222|emb|CCH61659.1| hypothetical protein TBLA_0F01160 [Tetrapisispora blattae CBS 6284]
Length = 215
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 15/137 (10%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL+R RTV +M+RDRGYF+ EI++S E F +K+ +M + N + + + +++
Sbjct: 9 VSRLWRTFRTVKEMVRDRGYFITQEEIDLSLEDFKSKYTNSMGTPERK-NISFQANPTEE 67
Query: 68 IYVFFP----------DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117
FP DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 68 TLAKFPELGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSI 127
Query: 118 SAK----FHLEVFQVNV 130
FH VN+
Sbjct: 128 PPATIETFHEASLIVNI 144
>gi|6319630|ref|NP_009712.1| Rpb5p [Saccharomyces cerevisiae S288c]
gi|133338|sp|P20434.1|RPAB1_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1; AltName: Full=ABC27; AltName: Full=DNA-directed
RNA polymerases I, II, and III 27 kDa polypeptide
gi|9257127|pdb|1DZF|A Chain A, Rpb5 From S.Cerevisiae
gi|14278327|pdb|1I3Q|E Chain E, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278338|pdb|1I50|E Chain E, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278368|pdb|1I6H|E Chain E, Rna Polymerase Ii Elongation Complex
gi|20150716|pdb|1K83|E Chain E, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749620|pdb|1NIK|E Chain E, Wild Type Rna Polymerase Ii
gi|30749741|pdb|1NT9|E Chain E, Complete 12-Subunit Rna Polymerase Ii
gi|34810557|pdb|1PQV|E Chain E, Rna Polymerase Ii-Tfiis Complex
gi|46015418|pdb|1R5U|E Chain E, Rna Polymerase Ii Tfiib Complex
gi|46015783|pdb|1SFO|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965914|pdb|1R9S|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965926|pdb|1R9T|E Chain E, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966110|pdb|1TWA|E Chain E, Rna Polymerase Ii Complexed With Atp
gi|56966124|pdb|1TWC|E Chain E, Rna Polymerase Ii Complexed With Gtp
gi|56966134|pdb|1TWF|E Chain E, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966144|pdb|1TWG|E Chain E, Rna Polymerase Ii Complexed With Ctp
gi|56966154|pdb|1TWH|E Chain E, Rna Polymerase Ii Complexed With 2'datp
gi|58177168|pdb|1WCM|E Chain E, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679448|pdb|1Y1W|E Chain E, Complete Rna Polymerase Ii Elongation Complex
gi|61679465|pdb|1Y77|E Chain E, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679506|pdb|1Y1V|E Chain E, Refined Rna Polymerase Ii-tfiis Complex
gi|61679519|pdb|1Y1Y|E Chain E, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754247|pdb|2B63|E Chain E, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590858|pdb|2B8K|E Chain E, 12-Subunit Rna Polymerase Ii
gi|122920064|pdb|2E2H|E Chain E, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920079|pdb|2E2I|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920094|pdb|2E2J|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921033|pdb|2NVQ|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921069|pdb|2NVT|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921085|pdb|2NVX|E Chain E, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921100|pdb|2NVY|E Chain E, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921112|pdb|2NVZ|E Chain E, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104678|pdb|2JA5|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104693|pdb|2JA6|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104714|pdb|2JA7|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104726|pdb|2JA7|Q Chain Q, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104738|pdb|2JA8|E Chain E, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387187|pdb|2YU9|E Chain E, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877777|pdb|2R7Z|E Chain E, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172231|pdb|2R92|E Chain E, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172244|pdb|2R93|E Chain E, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613466|pdb|2VUM|E Chain E, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368737|pdb|3CQZ|E Chain E, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983594|pdb|3FKI|E Chain E, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781919|pdb|3GTG|E Chain E, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781932|pdb|3GTJ|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781945|pdb|3GTK|E Chain E, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781958|pdb|3GTL|E Chain E, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781971|pdb|3GTM|E Chain E, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781985|pdb|3GTO|E Chain E, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781998|pdb|3GTP|E Chain E, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782011|pdb|3GTQ|E Chain E, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104515|pdb|3H3V|F Chain F, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839445|pdb|3HOU|E Chain E, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839460|pdb|3HOU|Q Chain Q, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839475|pdb|3HOV|E Chain E, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839490|pdb|3HOW|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839505|pdb|3HOX|E Chain E, Complete Rna Polymerase Ii Elongation Complex V
gi|254839520|pdb|3HOY|E Chain E, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839535|pdb|3HOZ|E Chain E, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471950|pdb|3I4M|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471965|pdb|3I4N|E Chain E, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618769|pdb|3K1F|E Chain E, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914555|pdb|3K7A|E Chain E, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982478|pdb|3M3Y|E Chain E, Rna Polymerase Ii Elongation Complex C
gi|295982491|pdb|3M4O|E Chain E, Rna Polymerase Ii Elongation Complex B
gi|325053967|pdb|3PO2|E Chain E, Arrested Rna Polymerase Ii Elongation Complex
gi|325053982|pdb|3PO3|E Chain E, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634542|pdb|3QT1|E Chain E, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197459|pdb|3RZD|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197471|pdb|3RZO|E Chain E, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197483|pdb|3S14|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197495|pdb|3S15|E Chain E, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197507|pdb|3S16|E Chain E, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197519|pdb|3S17|E Chain E, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197531|pdb|3S1M|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197543|pdb|3S1N|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197555|pdb|3S1Q|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197567|pdb|3S1R|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197579|pdb|3S2D|E Chain E, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781200|pdb|3S2H|E Chain E, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251637|pdb|3J0K|E Chain E, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380840|pdb|4A3C|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546294|pdb|4A3B|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546312|pdb|4A3D|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546329|pdb|4A3E|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546346|pdb|4A3F|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546363|pdb|4A3J|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546380|pdb|4A3K|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546396|pdb|4A3L|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546413|pdb|4A3M|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977883|pdb|4A3G|E Chain E, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977898|pdb|4A3I|E Chain E, Rna Polymerase Ii Binary Complex With Dna
gi|380764983|pdb|4A93|E Chain E, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145450|pdb|4BBR|E Chain E, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145463|pdb|4BBS|E Chain E, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|287822|emb|CAA37381.1| RNA polymerase RPB5 subunit [Saccharomyces cerevisiae]
gi|396754|emb|CAA50472.1| DNA-directed RNA polymerase [Saccharomyces cerevisiae]
gi|536484|emb|CAA85113.1| RPB5 [Saccharomyces cerevisiae]
gi|151946543|gb|EDN64765.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae YJM789]
gi|190408693|gb|EDV11958.1| 25 kDa RNA polymerase subunit [Saccharomyces cerevisiae RM11-1a]
gi|207347621|gb|EDZ73732.1| YBR154Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270199|gb|EEU05422.1| Rpb5p [Saccharomyces cerevisiae JAY291]
gi|285810484|tpg|DAA07269.1| TPA: Rpb5p [Saccharomyces cerevisiae S288c]
gi|323334603|gb|EGA75977.1| Rpb5p [Saccharomyces cerevisiae AWRI796]
gi|323338690|gb|EGA79906.1| Rpb5p [Saccharomyces cerevisiae Vin13]
gi|323356099|gb|EGA87904.1| Rpb5p [Saccharomyces cerevisiae VL3]
gi|349576528|dbj|GAA21699.1| K7_Rpb5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300997|gb|EIW12086.1| Rpb5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 215
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 A 119
Sbjct: 129 P 129
>gi|365766868|gb|EHN08357.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 215
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 A 119
Sbjct: 129 P 129
>gi|290878169|emb|CBK39228.1| Rpb5p [Saccharomyces cerevisiae EC1118]
Length = 215
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 A 119
Sbjct: 129 P 129
>gi|242069947|ref|XP_002450250.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
gi|241936093|gb|EES09238.1| hypothetical protein SORBIDRAFT_05g002600 [Sorghum bicolor]
Length = 263
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E KRLF RRT ++MLRDRGY V + E+ + +F A + + + E L + L +D S
Sbjct: 65 ESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPELERLAFSTTLASDPSS 124
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F + V + ++ +K EN+ R IL++Q + AR I+EI + ++ F
Sbjct: 125 KVKVVFCPPEPVKIAAIRVVYTGVKDENLSRLILILQGRIMSKAREAIKEI-FPYKVDTF 183
Query: 127 QVN 129
Q+
Sbjct: 184 QIT 186
>gi|162606200|ref|XP_001713615.1| RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
gi|13794535|gb|AAK39910.1|AF165818_118 RNA polymerase I, II and III 24.3 kDa subunit [Guillardia theta]
Length = 214
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDF--EINMSKEQFIAKFGENMK--REDLVINKAL 60
D+ I+ LF++RRTV+QM+RDRGY V D ++N+S+ F + +N R+ L I +
Sbjct: 4 DKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKRPR 63
Query: 61 RNDSSDQIYVFF----PDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
++ ++I + F D+ +GVK+++ + R+K+E R ++++ LTP A+ +
Sbjct: 64 WDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHAKQAVSS 123
Query: 117 ISA 119
I++
Sbjct: 124 INS 126
>gi|241950235|ref|XP_002417840.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
gi|223641178|emb|CAX45555.1| DNA-directed RNA polymerases I, II and III subunit, putative
[Candida dubliniensis CD36]
Length = 214
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D + RLFR +TV +M+RDRGY++ E++M+ E+F +K ++M +R+ +
Sbjct: 1 MDDTDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQ 60
Query: 58 KALRNDS------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
++ + ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ATPTGETLEKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSAN 120
Query: 112 TCIQEISAKFHLEVFQVN 129
I +S +E+FQ N
Sbjct: 121 KLIPTVSPAT-IEIFQEN 137
>gi|255728687|ref|XP_002549269.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240133585|gb|EER33141.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 214
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D I RLFR +TV +M+RDRGY++ EI+M+ E+F +K ++M +R+ +
Sbjct: 1 MDETDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMCFQ 60
Query: 58 KALRNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
++ ++ ++V F DE VG+KTM+ + + +N + + Q ++TP A
Sbjct: 61 AQPTGETLEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGLFIYQNSITPSAN 120
Query: 112 TCIQEISAKFHLEVFQ 127
I +S +E+FQ
Sbjct: 121 KLIPTVSPSV-IEIFQ 135
>gi|195164197|ref|XP_002022935.1| GL16452 [Drosophila persimilis]
gi|194104997|gb|EDW27040.1| GL16452 [Drosophila persimilis]
Length = 126
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 3 LSDE-EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVI 56
++DE EI +L+ IR+TV +M DRGY V E++ + EQF FG+ R DL +
Sbjct: 5 MNDEAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTM 64
Query: 57 NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKS 92
+D +++ VFFP+E KV V+T+K + NRM+
Sbjct: 65 VLTHADDPKNRMLVFFPEEPKVAVRTIKAFANRMRP 100
>gi|1680605|gb|AAC60556.1|S59774_1 RNA polymerase subunit [Saccharomyces cerevisiae]
Length = 215
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVEWPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 A 119
Sbjct: 129 P 129
>gi|238878328|gb|EEQ41966.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Candida
albicans WO-1]
Length = 214
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D + RLFR +TV +M+RDRGY++ E++M+ E+F +K ++M +R+ +
Sbjct: 1 MDDTDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQ 60
Query: 58 KALRNDS------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
++ + ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ATPTAETLEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSAN 120
Query: 112 TCIQEISAKFHLEVFQVN 129
I +S +E+FQ N
Sbjct: 121 KLIPTVSPAT-IEIFQEN 137
>gi|401626842|gb|EJS44762.1| rpb5p [Saccharomyces arboricola H-6]
Length = 215
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R +TV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ITKFPEMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 A 119
Sbjct: 129 P 129
>gi|149034615|gb|EDL89352.1| rCG29511, isoform CRA_f [Rattus norvegicus]
Length = 175
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 6/110 (5%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----MKREDLVINKA 59
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL + A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 60 LRNDSSDQIYVFFPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108
+D +DQ++VFFP E G + + + F + + +++P
Sbjct: 64 HNDDPTDQMFVFFPGEGPWAGSSGILWGPPVLVAAACFVPVFPWEASISP 113
>gi|330040362|ref|XP_003239875.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
gi|327206800|gb|AEA38977.1| RNA polymerase I, II and III 24.3 kDa subunit [Cryptomonas
paramecium]
Length = 216
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 8/127 (6%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFV--GDFEINMSKEQFIAKFGENMK--REDLVI 56
M + E+ LFRIRRTV+Q+L+DR Y V ++NMS+ F K+ +N K RE + I
Sbjct: 1 MDKENNEVFNLFRIRRTVLQLLKDRNYLVFNSKDDLNMSRIDFEFKYVKNYKVVREKMEI 60
Query: 57 NKALRNDSSDQIYVFFPDEQK----VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFART 112
+ L N +I V F +++K +GVK ++ Y RMK + + ++V+ LT A+
Sbjct: 61 KRPLWNSLDKKILVVFIEKEKSGTMIGVKLIRKYCERMKQDQLSNLVIVLHAKLTSHAKQ 120
Query: 113 CIQEISA 119
I I++
Sbjct: 121 AIDTINS 127
>gi|365761982|gb|EHN03600.1| Rpb5p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401841351|gb|EJT43753.1| RPB5-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 215
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R +TV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFKTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
+ +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 VSKFPEMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 A 119
Sbjct: 129 P 129
>gi|164656180|ref|XP_001729218.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
gi|159103108|gb|EDP42004.1| hypothetical protein MGL_3685 [Malassezia globosa CBS 7966]
Length = 159
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--MKREDLVINKALR 61
D E RL+R+ RT+ +++ DRGY V + E+N+ + F A+ N + R + +
Sbjct: 3 DDRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQHK 62
Query: 62 NDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
+ ++++VF+ E+ VGVKTM+ + N ++ +N+ R I++ +T A+ I+ + +
Sbjct: 63 DKPEERLFVFYSTERNVGVKTMRQFINILEEKNITRGIIIWSDKMTSAAKKVIEAMRLQL 122
Query: 122 HLEVFQ 127
LE F+
Sbjct: 123 VLEDFE 128
>gi|254570507|ref|XP_002492363.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|238032161|emb|CAY70112.1| RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III [Komagataella pastoris GS115]
gi|328353624|emb|CCA40022.1| DNA-directed RNA polymerase II subunit E [Komagataella pastoris CBS
7435]
Length = 214
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M DRGYF+ E++ S E+F +K ++M + L N + +
Sbjct: 8 ISRLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKLMSFLANPTPEA 67
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
+ +V F DE VG+KTM+ + R++ +N I + Q N+TP A I +S
Sbjct: 68 LEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTGIFIYQNNITPSANKMIPTVS 127
Query: 119 AKFHLEVFQ 127
+E FQ
Sbjct: 128 PAI-IETFQ 135
>gi|126275976|ref|XP_001386931.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
gi|126212800|gb|EAZ62908.1| DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) [Scheffersomyces stipitis CBS 6054]
Length = 213
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
D + RLFR +TV +M+RDRGY++ E++MS ++F AK ++M R + N +
Sbjct: 4 DRTVSRLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKLMCFQANPT 63
Query: 65 SD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
++ ++V F DE VG+KTM+ + + +N I + Q ++TP A I
Sbjct: 64 AESLDKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLIP 123
Query: 116 EISAKFHLEVFQ 127
+S +E FQ
Sbjct: 124 TVSPA-SIETFQ 134
>gi|15227327|ref|NP_181665.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
gi|3894190|gb|AAC78539.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
gi|19310385|gb|AAL84932.1| At2g41340/F13H10.11 [Arabidopsis thaliana]
gi|330254867|gb|AEC09961.1| RNA polymerase II fifth largest subunit, D [Arabidopsis thaliana]
Length = 218
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S E + + RRT M+MLRDRGY V D +IN+S +QF A +GE+ + L I+ R D
Sbjct: 17 SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76
Query: 64 SSDQIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
SS +I V F V V M+ + + EN+ ILV+Q ++T A ++ S F
Sbjct: 77 SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FK 134
Query: 123 LEVFQVN 129
+E+F++
Sbjct: 135 VELFEIT 141
>gi|357153158|ref|XP_003576358.1| PREDICTED: uncharacterized protein LOC100836489 [Brachypodium
distachyon]
Length = 468
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
D E RLF RRT ++MLRDR Y V + ++ + +F A + E + + L + L +D
Sbjct: 268 DPESHRLFLARRTALEMLRDRRYAVPEADLARTLPEFRAWWAERPEIDRLSFSTTLASDP 327
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
S+++ + F + + ++ R+K EN+ ILV+Q +T A+ I+EI K+ ++
Sbjct: 328 SNKVQLVFCPPEPFKIAAIREVYGRVKDENLSCLILVLQSKITSRAKDAIKEI-FKYKVD 386
Query: 125 VFQV 128
VFQ+
Sbjct: 387 VFQI 390
>gi|323349753|gb|EGA83968.1| Rpb5p [Saccharomyces cerevisiae Lalvin QA23]
Length = 215
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ + I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKXFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 A 119
Sbjct: 129 P 129
>gi|367006695|ref|XP_003688078.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
gi|357526385|emb|CCE65644.1| hypothetical protein TPHA_0M00690 [Tetrapisispora phaffii CBS 4417]
Length = 215
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ + L+R RTV +M+RDRGYF+ EI + E F AK+ + M + + N
Sbjct: 5 SERSVSSLWRTFRTVKEMVRDRGYFISQDEIELPLEDFRAKYCDYMGKPQRKMMSFQANP 64
Query: 64 SSD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + ++V F DE VGVKTMK + ++ +N I V Q N+TP A +
Sbjct: 65 TEESLEKFPETGSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMKLV 124
Query: 115 QEISAK----FHLEVFQVNV 130
I FH VN+
Sbjct: 125 PSIPPATIETFHEASLVVNI 144
>gi|344307865|ref|XP_003422599.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Loxodonta africana]
Length = 224
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 27/145 (18%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFV---GDFEINMSKEQFIAKFGENMKREDLVINKALR 61
+EE RL++IR+T+MQ+ R R V G E +S + R +AL
Sbjct: 4 EEETYRLWKIRKTIMQVSRARNGLVVPGGGKERGVSPSLSPCGWIGGSPRPP----QALV 59
Query: 62 NDSSDQIYVFFP--------------------DEQKVGVKTMKTYTNRMKSENVFRAILV 101
S+ + P +E KVG+KT+K Y RM+ EN+ RA++V
Sbjct: 60 AGSAPGALPYVPRAQRRDTCFGAGRARVTVRREEPKVGIKTIKVYCQRMQEENITRALIV 119
Query: 102 VQQNLTPFARTCIQEISAKFHLEVF 126
VQQ +TP A+ + +++ K+ LE F
Sbjct: 120 VQQGMTPSAKQSLVDMAPKYILEQF 144
>gi|297824079|ref|XP_002879922.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297325761|gb|EFH56181.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 218
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E + + RRT M+MLRDRGY V D ++N S EQF A +GE + + L I+ R DSS
Sbjct: 20 ECHKYYLARRTTMEMLRDRGYDVSDEDVNFSLEQFRALYGERLDVDRLRISAKHRFDSSK 79
Query: 67 QIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V M+ + + E++ ILV+Q ++T A ++ S F +E+
Sbjct: 80 KIMVVFCGTGMVKVNAMRAIAADVLNRESITGLILVLQSHITNQALKAVELFS--FKVEL 137
Query: 126 FQVN 129
F++
Sbjct: 138 FEIT 141
>gi|255718861|ref|XP_002555711.1| KLTH0G15598p [Lachancea thermotolerans]
gi|238937095|emb|CAR25274.1| KLTH0G15598p [Lachancea thermotolerans CBS 6340]
Length = 215
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 13/136 (9%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKR--------EDLVINKA 59
+ RL+R +TV +M+RDRGYF+ E+++S E F AK+ ++M R + + +A
Sbjct: 9 VSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPVEEA 68
Query: 60 LRN-DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
L + ++V F DE VG+KTMK + + +N I V Q +TP A + ++
Sbjct: 69 LEKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFVYQNGVTPSAMKLLPSVA 128
Query: 119 AK----FHLEVFQVNV 130
FH VN+
Sbjct: 129 PATIETFHEASLVVNI 144
>gi|358054002|dbj|GAA99801.1| hypothetical protein E5Q_06504 [Mixia osmundae IAM 14324]
Length = 298
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 67/116 (57%), Gaps = 9/116 (7%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVIN------ 57
++ +I R++R+ RTV ++ RDRGY + + EINMS ++F + N + +N
Sbjct: 5 TERDIARVWRVNRTVRELCRDRGYTMSEQEINMSLQKFTESYTMNGHLDRTALNFHASRH 64
Query: 58 --KALRNDSS-DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA 110
A R ++ QIYVFF +E+ +G+K ++ + + N+ IL+ +Q++TP A
Sbjct: 65 VPVAGREETEVQQIYVFFAEERSLGIKPVREFLTVLLDRNLHSGILIYKQSITPPA 120
>gi|320582063|gb|EFW96281.1| RNA polymerase subunit ABC27 [Ogataea parapolymorpha DL-1]
Length = 214
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVINKALRNDSSD 66
RL+R RTV +M+RDRGY++ EI++S +QF K ++M +R+ + ++++
Sbjct: 10 RLWRAYRTVKEMVRDRGYYITQEEIDISLDQFREKICDSMGMPQRKLMSFQANASQEAAE 69
Query: 67 Q------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+ ++V F DE VG+ TMK + + +N I + QQN+TP A I ++
Sbjct: 70 KYGDLGPLWVEFCDEPSVGITTMKNFCQHIADKNFATGIFIYQQNMTPSATKAIA-VAEP 128
Query: 121 FHLEVFQ 127
+E FQ
Sbjct: 129 AIIETFQ 135
>gi|403218074|emb|CCK72566.1| hypothetical protein KNAG_0K02020 [Kazachstania naganishii CBS
8797]
Length = 215
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
++RL+R RT+ +M++DRGYF+ E+ +S E F K+ ++M R + N +
Sbjct: 9 VRRLWRTFRTIKEMVKDRGYFITQEEVELSLEDFKVKYCDSMGRPQRKMMSFQANPMEEA 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMK + ++ +N I V Q N+TP A + I
Sbjct: 69 IAKFPDMGSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQIGIFVYQNNVTPSAMKLVPSIP 128
Query: 119 AK----FHLEVFQVNV 130
FH VN+
Sbjct: 129 PATIETFHETSLVVNI 144
>gi|45190642|ref|NP_984896.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|54036391|sp|Q757H7.1|RPAB1_ASHGO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|44983621|gb|AAS52720.1| AER036Wp [Ashbya gossypii ATCC 10895]
gi|374108119|gb|AEY97026.1| FAER036Wp [Ashbya gossypii FDAG1]
Length = 215
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD- 66
+ RL+R RTV +M+RDRGYF+ E+++S E F AK+ ++M R + N + +
Sbjct: 9 VSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEET 68
Query: 67 --------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
++V F DE VG+KTMK + + +N I + Q +TP A + ++
Sbjct: 69 LKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVA 128
Query: 119 A 119
Sbjct: 129 P 129
>gi|326430122|gb|EGD75692.1| polymerase II polypeptide E [Salpingoeca sp. ATCC 50818]
Length = 201
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
+++RL R T +Q+ DRGY V E+ SK +F +FG + + +L A + D +
Sbjct: 2 DVERLRRAYNTTVQLCSDRGYSVPHTEV--SKTEFEQRFGSDPRPSELDSVFAHKKDEQN 59
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE-ISAKFHLEV 125
+I +F+ D+ K+G+ +K Y +++ + + I+V Q LTP A +++ SA ++V
Sbjct: 60 RIAIFWADDLKIGISKVKEYLDKLTQQGINAGIIVAQAKLTPSASKAVRDAASAGITVQV 119
Query: 126 FQVN 129
F +
Sbjct: 120 FDIT 123
>gi|354545760|emb|CCE42488.1| hypothetical protein CPAR2_201310 [Candida parapsilosis]
Length = 214
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 10/138 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D I RLFR +TV +M++DRGY++ E++M+ EQF AK M +R+ +
Sbjct: 1 MDDNDRAISRLFRTYKTVKEMVKDRGYYISQEELDMTLEQFRAKVCNTMGEPQRKLMCFQ 60
Query: 58 KALRNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+ D+ ++V F DE VG+KTM+ + + +N I + Q +TP A
Sbjct: 61 ATPTAEQLDKFPDMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSVGIFIYQNGITPSAN 120
Query: 112 TCIQEISAKFHLEVFQVN 129
I + +E FQ N
Sbjct: 121 KLIPTVQPAT-IETFQEN 137
>gi|297817026|ref|XP_002876396.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322234|gb|EFH52655.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 222
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S EE R + R+ +QMLRDRGY V D +IN+S F A +GE + L I+ R+D
Sbjct: 21 SSEESHRYYLARQNALQMLRDRGYQVSDEDINLSLHDFRAVYGERPDVDRLRISAQHRSD 80
Query: 64 SSDQIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
SS ++ V F V V +++ + + E V ILV+Q +T A I+ S F
Sbjct: 81 SSKKVKVVFFGTGMVKVNAIRSIAADVLSQETVTGLILVLQSQVTKQAMKAIELFS--FK 138
Query: 123 LEVFQVN 129
+E+FQ+
Sbjct: 139 VEIFQIT 145
>gi|11994623|dbj|BAB02760.1| RNA polymerase-like protein [Arabidopsis thaliana]
Length = 178
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 34/130 (26%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL 60
M L DEEIKRLF ++RT+MQML+DRGY + EI M+ E+FI K+G+NMK
Sbjct: 1 MALMDEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMK---------- 50
Query: 61 RNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
+++ + K + RAILVV Q++ F+R + + A
Sbjct: 51 --------------------RSLLLLSKLRKMMTMIRAILVV-QDIKAFSRQALVFLGAV 89
Query: 121 ---FHLEVFQ 127
FH+EVFQ
Sbjct: 90 YPIFHIEVFQ 99
>gi|50311991|ref|XP_456027.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|54036341|sp|Q6CJ62.1|RPAB1_KLULA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49645163|emb|CAG98735.1| KLLA0F21098p [Kluyveromyces lactis]
Length = 215
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R +TV +M+RDRGYF+ EI++S E F AK+ ++M + + N + +
Sbjct: 9 ISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA 110
I +V F DE VGVKTMK + + +N I + Q +TP A
Sbjct: 69 IEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSA 120
>gi|68074989|ref|XP_679411.1| DNA-directed RNA polymerase 2 [Plasmodium berghei strain ANKA]
gi|56500155|emb|CAI00595.1| DNA-directed RNA polymerase 2, putative [Plasmodium berghei]
Length = 107
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F EN K R + I + +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108
++++I V+F DE +K GVK ++ T +M +++ RAILV Q LTP
Sbjct: 62 ANNKIIVYFVDEVKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTP 107
>gi|209878710|ref|XP_002140796.1| DNA-directed RNA polymerase 2 [Cryptosporidium muris RN66]
gi|209556402|gb|EEA06447.1| DNA-directed RNA polymerase 2, putative [Cryptosporidium muris
RN66]
Length = 205
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRNDSSDQI 68
R FR RRT+ +ML DRGY V + + F +F + + R +++ + + D + +I
Sbjct: 7 RFFRARRTLCEMLEDRGYIVSSQDKDEQFATFKERFESHQRLRSRMLMVASHKQDQTKRI 66
Query: 69 YVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
+F DE +K GVK ++ +M N+ RAIL+ Q LT A+ I + + K ++E F
Sbjct: 67 ICYFADESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESFL 126
Query: 128 VN 129
N
Sbjct: 127 EN 128
>gi|226491902|ref|NP_001141853.1| uncharacterized protein LOC100273995 [Zea mays]
gi|194706176|gb|ACF87172.1| unknown [Zea mays]
Length = 248
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT ++MLRDRGY V + E+ + +F A + + E L + L +D S
Sbjct: 50 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLTSDPSS 109
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F V + ++ +K EN+ R IL++Q + R I+EI +F ++ F
Sbjct: 110 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 168
Query: 127 QVN 129
Q+
Sbjct: 169 QIT 171
>gi|195635599|gb|ACG37268.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 264
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT ++MLRDRGY V + E+ + +F A + + E L + L +D S
Sbjct: 66 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLASDPSS 125
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F V + ++ +K EN+ R IL++Q + R I+EI +F ++ F
Sbjct: 126 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 184
Query: 127 QVN 129
Q+
Sbjct: 185 QIT 187
>gi|414588639|tpg|DAA39210.1| TPA: DNA-directed RNA polymerase II polypeptide [Zea mays]
Length = 263
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT ++MLRDRGY V + E+ + +F A + + E L + L +D S
Sbjct: 65 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLTSDPSS 124
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F V + ++ +K EN+ R IL++Q + R I+EI +F ++ F
Sbjct: 125 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 183
Query: 127 QVN 129
Q+
Sbjct: 184 QIT 186
>gi|66358302|ref|XP_626329.1| DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa II]
gi|46228002|gb|EAK88922.1| putative DNA-directed RNA polymerase 2 [Cryptosporidium parvum Iowa
II]
Length = 214
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLV 55
+ + D R FR RRT+ +ML DRGY V + KE+ + F E + R ++
Sbjct: 7 LIIMDSSDNRFFRARRTLCEMLEDRGYIVS----SQDKEEDFSTFKERFESHQRLRSRML 62
Query: 56 INKALRNDSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + R D + +I +F DE +K GVK ++ +M + RAIL+ Q LT A+ I
Sbjct: 63 MVASHRQDQTKRIICYFADESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAI 122
Query: 115 QEISAKFHLEVFQVN 129
+ + K ++E F N
Sbjct: 123 LDAAPKHYIESFLEN 137
>gi|87162511|gb|ABD28306.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
Length = 224
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ E R F R+T+M ML DRGY V + ++ +S +F ++FGE K L ++ +LR++
Sbjct: 23 SNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFPKPHTLGVSVSLRSN 82
Query: 64 SSDQIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
S ++ V FP + + +++ E + R ILV+Q +T +AR ++ + F
Sbjct: 83 PSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERLSRLILVMQSKMTSYARKELE--NCPFK 140
Query: 123 LEVFQVN 129
+E+ Q+N
Sbjct: 141 VEIIQLN 147
>gi|12229927|sp|Q9P4B9.1|RPAB1_KLUMA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|9651716|gb|AAF91238.1|AF225206_4 RNA polymerase subunit [Kluyveromyces marxianus]
Length = 215
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M+RDRGYF+ EI++S E F K+ ++M + + N + +
Sbjct: 9 ISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA 110
I +V F DE VGVKTMK + + +N I + Q +TP A
Sbjct: 69 IEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSA 120
>gi|167516220|ref|XP_001742451.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779075|gb|EDQ92689.1| predicted protein [Monosiga brevicollis MX1]
Length = 210
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRE-DLVINKALRNDSSDQI 68
RL+++ T+ QM DRG+ V +NM+ + + +GE ++E + K +D +D +
Sbjct: 9 RLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGEYPRKELSFPVQKV--DDDNDGL 66
Query: 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+VFFP+ V V +K+ +R+KS+N+ RAI+V Q+ + P A++ I
Sbjct: 67 FVFFPESPDVKVAAIKSLYDRLKSDNLRRAIIVYQRKVAPVAKSHI 112
>gi|22902245|gb|AAH37681.1| Polymerase (RNA) II (DNA directed) polypeptide E [Mus musculus]
gi|148699663|gb|EDL31610.1| mCG13422, isoform CRA_c [Mus musculus]
Length = 96
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----MKREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDE 75
A +D +DQ++VFFP E
Sbjct: 63 AHNDDPTDQMFVFFPGE 79
>gi|344230604|gb|EGV62489.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Candida
tenuis ATCC 10573]
gi|344230605|gb|EGV62490.1| hypothetical protein CANTEDRAFT_114816 [Candida tenuis ATCC 10573]
Length = 214
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE--NMKREDLVINK 58
M +D + RL+R +TV +M+RDRGY++ E++MS ++F K + NM + L+ +
Sbjct: 1 MDEADRSMSRLWRTFKTVKEMVRDRGYYISQEELDMSLDEFRQKICDSMNMPQRKLMCFQ 60
Query: 59 ALRNDSS-------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
A S ++V F DE VG+KTM+ + + N I + Q ++TP A
Sbjct: 61 ANPTAESLEKFPELGTLWVEFCDEDSVGIKTMRNFCIHISERNFSTGIFIYQSSITPSAN 120
Query: 112 TCIQEISAKFHLEVFQ 127
I + A +E FQ
Sbjct: 121 KLIPTV-APASIETFQ 135
>gi|406605852|emb|CCH42738.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 215
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---LVINKAL 60
+D + RL+R RTV +M DRGYF+ EI M+ E+F +K+ + M R + +
Sbjct: 5 NDRIVSRLWRAFRTVKEMALDRGYFIATEEITMNLEEFRSKYCDAMGRPQRKLMSFQASP 64
Query: 61 RNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
++S Q ++V F DE VG+KTMK + + +N I + Q +TP A I
Sbjct: 65 TSESLGQFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFSVGIFIYQNGITPSANKLI 124
Query: 115 QEISAKFHLEVFQ 127
++ +E FQ
Sbjct: 125 PTVAPAV-IETFQ 136
>gi|67624263|ref|XP_668414.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis TU502]
gi|54659611|gb|EAL38180.1| DNA-directed RNA polymerase 2 [Cryptosporidium hominis]
gi|323509171|dbj|BAJ77478.1| cgd2_980 [Cryptosporidium parvum]
gi|323509997|dbj|BAJ77891.1| cgd2_980 [Cryptosporidium parvum]
Length = 205
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-----REDLVINKA 59
D R FR RRT+ +ML DRGY V + KE+ + F E + R +++ +
Sbjct: 2 DSSDNRFFRARRTLCEMLEDRGYIVS----SQDKEEDFSTFKERFESHQRLRSRMLMVAS 57
Query: 60 LRNDSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
R D + +I +F DE +K GVK ++ +M + RAIL+ Q LT A+ I + +
Sbjct: 58 HRQDQTKRIICYFADESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAA 117
Query: 119 AKFHLEVFQVN 129
K ++E F N
Sbjct: 118 PKHYIESFLEN 128
>gi|448525471|ref|XP_003869121.1| Rpb5 protein [Candida orthopsilosis Co 90-125]
gi|380353474|emb|CCG22984.1| Rpb5 protein [Candida orthopsilosis]
Length = 214
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM--KREDLVINK 58
M +D I RLFR +TV +M++DRGY++ E+ M+ EQF +K +M + L+ +
Sbjct: 1 MDDNDRAISRLFRTYKTVKEMVKDRGYYISQEELEMTLEQFRSKVCNSMGEPQRKLMCFQ 60
Query: 59 ALRNDSS-------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
A N ++V F DE VG+KTM+ + + +N I + Q +TP A
Sbjct: 61 ATPNAEQLEKFPDMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSVGIFIYQNGITPSAN 120
Query: 112 TCIQEISAKFHLEVFQVN 129
I + +E FQ N
Sbjct: 121 KLIPTVQPAT-IETFQEN 137
>gi|344302236|gb|EGW32541.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Spathaspora
passalidarum NRRL Y-27907]
Length = 214
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 10/136 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D I RLFR +TV +M+RDRGY++ EI+M+ ++F AK ++M +R+ +
Sbjct: 1 MDDNDRVISRLFRSFKTVKEMVRDRGYYITQEEIDMTLDEFRAKVCDSMGVPQRKLMCFQ 60
Query: 58 KALRNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+S ++ ++V F DE VG+KTM+ + + +N + + Q ++TP A
Sbjct: 61 AQPTGESLEKFPDLGALWVEFCDEASVGIKTMRNFCIHITEKNFSTGLFIYQNSITPSAN 120
Query: 112 TCIQEISAKFHLEVFQ 127
I +S +E FQ
Sbjct: 121 KLIPTVSPA-SIETFQ 135
>gi|363753390|ref|XP_003646911.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890547|gb|AET40094.1| hypothetical protein Ecym_5335 [Eremothecium cymbalariae
DBVPG#7215]
Length = 215
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
+ RL+R RTV +M+RDRGYF+ EI+++ + F AK+ ++M R + N + +
Sbjct: 9 VSRLWRAFRTVKEMVRDRGYFITQEEIDLALDDFKAKYCDSMGRPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I ++ F DE VG+KTMK + + +N I + Q +TP A + +
Sbjct: 69 IVKSPQMGSVWIEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSV- 127
Query: 119 AKFHLEVFQVNVFSLMI 135
A +E F N SL++
Sbjct: 128 APATIETF--NEASLVV 142
>gi|15230206|ref|NP_191267.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
gi|6911878|emb|CAB72178.1| putative protein [Arabidopsis thaliana]
gi|26452919|dbj|BAC43537.1| unknown protein [Arabidopsis thaliana]
gi|28973011|gb|AAO63830.1| unknown protein [Arabidopsis thaliana]
gi|332646091|gb|AEE79612.1| rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana]
Length = 222
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
LS EE R + RR +QMLRDRGY V D +IN+S F +GE + L I+ R+
Sbjct: 20 LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79
Query: 63 DSSDQIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
DS+ ++ + F V V +++ + + E + ILV+Q ++T A I+ S F
Sbjct: 80 DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--F 137
Query: 122 HLEVFQV 128
+E+FQ+
Sbjct: 138 KVEIFQI 144
>gi|67469583|ref|XP_650770.1| RNA polymerase subunit Rpb5 [Entamoeba histolytica HM-1:IMSS]
gi|56467420|gb|EAL45380.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407044881|gb|EKE42883.1| RNA polymerase Rpb5, C-terminal domain containing protein
[Entamoeba nuttalli P19]
gi|449705666|gb|EMD45670.1| RNA polymerase subunit Rpb5, putative [Entamoeba histolytica KU27]
Length = 204
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALRN 62
E + ++R +TV++MLRDRGY + + N + E F +F GE + ++L I N
Sbjct: 2 ESVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
D++D I VFF + + + Y ++SE+V RAI+V + L+ + +++
Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQ 115
>gi|167379694|ref|XP_001735242.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Entamoeba dispar SAW760]
gi|165902841|gb|EDR28561.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative [Entamoeba dispar SAW760]
Length = 204
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKREDLVINKALRN 62
E + ++R +TV++MLRDRGY + + N + E F +F GE + ++L I N
Sbjct: 2 ENVTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKEN 61
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
D++D I VFF + + + Y ++SE+V RAI+V + L+ + +++
Sbjct: 62 DATDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQMMEQ 115
>gi|399949804|gb|AFP65461.1| RNA polymerase I, II and III 24.3 kDa subunit [Chroomonas
mesostigmatica CCMP1168]
Length = 216
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFE--INMSKEQFIAKFGENMK--REDLVI 56
M D+EI +FR+R+TV Q+LRDRG+ V D + ++M + F KF +N + RE+L I
Sbjct: 1 MESRDKEIFNVFRVRKTVFQILRDRGFIVLDNQEDLDMPRTVFERKFVKNYQIVREELEI 60
Query: 57 NKALRNDSSDQIYVFFPDEQK----VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFART 112
+ + +I V F +K +GVK+++ Y R+K +N +ILV+ LT A+
Sbjct: 61 IRPKWQMENHKILVAFVQGEKGKLTIGVKSIREYCERIKQDNYESSILVLHGRLTSHAKQ 120
Query: 113 CIQEISA 119
I I++
Sbjct: 121 AISSINS 127
>gi|50426767|ref|XP_461981.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
gi|54036338|sp|Q6BIJ0.1|RPAB1_DEBHA RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49657651|emb|CAG90451.1| DEHA2G09988p [Debaryomyces hansenii CBS767]
Length = 214
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D I RL+R +TV +M+RDRGY++ EI+MS +F ++ ++M +R+ +
Sbjct: 1 MEDTDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQ 60
Query: 58 KALRNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+S ++ ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ANPTAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSAN 120
Query: 112 TCIQEISAKFHLEVFQ 127
I +S +E FQ
Sbjct: 121 KLIPTVSPA-SIETFQ 135
>gi|448114850|ref|XP_004202684.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359383552|emb|CCE79468.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---------R 51
M +D + RL+R +TV +M+RDRGY++ EI MS ++F A ++M +
Sbjct: 1 MDDNDRTVTRLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRLMCFQ 60
Query: 52 EDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+ + + S ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ANPTAEELEKFPSLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQASITPSAT 120
Query: 112 TCIQEISAKFHLEVFQ 127
I +S +E FQ
Sbjct: 121 KLIPTVSPA-SIETFQ 135
>gi|448112295|ref|XP_004202060.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
gi|359465049|emb|CCE88754.1| Piso0_001533 [Millerozyma farinosa CBS 7064]
Length = 214
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK---------R 51
M +D + RL+R +TV +M+RDRGY++ EI MS ++F A ++M +
Sbjct: 1 MDDNDRTVSRLWRTFKTVKEMVRDRGYYITQEEIEMSLDEFRAHVCDSMGIPQRRLMCFQ 60
Query: 52 EDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+ + S ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ANPTAEALEKFPSLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQASITPSAT 120
Query: 112 TCIQEISAKFHLEVFQ 127
I +S +E FQ
Sbjct: 121 KLIPTVSPA-SIETFQ 135
>gi|160331077|ref|XP_001712246.1| rpabc5 [Hemiselmis andersenii]
gi|159765693|gb|ABW97921.1| rpabc5 [Hemiselmis andersenii]
Length = 216
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 8/121 (6%)
Query: 7 EIKRLFRIRRTVMQMLRDRGY--FVGDFEINMSKEQFIAKFGENMK--REDLVINKALRN 62
EI LF+IRRT++QMLRDR Y F ++ MS+ F KF +N + R +L IN++
Sbjct: 7 EILNLFKIRRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKWL 66
Query: 63 DSSDQIYVFFPDEQK----VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
+ + +I V F + +K +GVK+++ + R+K + +I+V+ LT A+ I I+
Sbjct: 67 EENMRILVVFIEGEKEKSAIGVKSIRGFCERIKQDGFQNSIIVLHGKLTSHAKQAINSIN 126
Query: 119 A 119
+
Sbjct: 127 S 127
>gi|21617912|gb|AAM66962.1| putative DNA-directed RNA polymerase 23kD subunit [Arabidopsis
thaliana]
Length = 222
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
LS EE R + RR +Q+LRDRGY V D +IN+S F +GE + L I+ R+
Sbjct: 20 LSSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79
Query: 63 DSSDQIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
DS+ ++ + F V V +++ + + E + ILV+Q ++T A I+ S F
Sbjct: 80 DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--F 137
Query: 122 HLEVFQV 128
+E+FQ+
Sbjct: 138 KVEIFQI 144
>gi|432855570|ref|XP_004068252.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like isoform 2 [Oryzias latipes]
Length = 159
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 46/122 (37%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
+EE RL++IR+T+MQ+ DRGY
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYL------------------------------------ 27
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
E KVG+KT+K Y RM+ EN+ RAI+VVQ +TP A+ + +++ K+ LE
Sbjct: 28 ----------EPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILE 77
Query: 125 VF 126
F
Sbjct: 78 QF 79
>gi|403332978|gb|EJY65550.1| DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Oxytricha
trifallax]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 11 LFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD---- 66
L+R+R+TV+QML+DRGY V D ++ + E+F A F +L++ K + D +D
Sbjct: 9 LYRVRKTVLQMLKDRGYIVSDKKLKQTIEEFKATFNNTRDSLNLIVTKRQQVDPNDPNSQ 68
Query: 67 ---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
++ VFFPD +K+ + +K +M N F AI++++
Sbjct: 69 VAQNSEEQQKLIVFFPDVEKLNMAALKQIAIKMLEVNCFNAIVIIK 114
>gi|255544029|ref|XP_002513077.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223548088|gb|EEF49580.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 239
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E +R + R+TVM+MLRDRGY V D E+ S +F+++FG+N L I+ +L +
Sbjct: 41 ESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLRISASLHSHPDK 100
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKS-ENVFRAILVVQQNLTPFARTCIQEISAK---FH 122
++ V F +++ + ++ ++K+ E++ IL++Q + +AR + + +K FH
Sbjct: 101 KMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSKVEIFH 160
Query: 123 LEVFQVNV 130
+ VN+
Sbjct: 161 ISDLLVNI 168
>gi|195606570|gb|ACG25115.1| DNA-directed RNA polymerase II 23 kDa polypeptide [Zea mays]
Length = 154
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E RLF RRT ++ML DRGY V + E+ + +F A + E L L +D S
Sbjct: 9 ESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSDPSS 68
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
++ V F V + ++ +K EN+ R IL++Q + R I+EI +F ++ F
Sbjct: 69 KVKVVFCPPGPVKIAAIRLIYTEVKDENLARLILILQGKIMSPTRESIKEI-FRFKVDTF 127
Query: 127 QVN 129
Q+
Sbjct: 128 QIT 130
>gi|297739911|emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+++MLRDRGY + +I++S + F + + + + L I+ ALR+D S
Sbjct: 132 ESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSDPSK 191
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V +++ ++ +++ + ILV+Q ++T A + S F +E
Sbjct: 192 KILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFS--FQVEK 249
Query: 126 FQV 128
FQ+
Sbjct: 250 FQI 252
>gi|359482221|ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 69/123 (56%), Gaps = 3/123 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+++MLRDRGY + +I++S + F + + + + L I+ ALR+D S
Sbjct: 31 ESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSDPSK 90
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V +++ ++ +++ + ILV+Q ++T A + S F +E
Sbjct: 91 KILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFS--FQVEK 148
Query: 126 FQV 128
FQ+
Sbjct: 149 FQI 151
>gi|15232524|ref|NP_191013.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
gi|7258352|emb|CAB77569.1| RNA polymerase 24kDa subunit-like protein [Arabidopsis thaliana]
gi|332645717|gb|AEE79238.1| RNA polymerase II fifth largest subunit, E [Arabidopsis thaliana]
Length = 233
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E KR + R T +MLRDRGY V + E++++ +F + FGE + E L I LR+D
Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F + + VK+++ ++ + A ILV+Q + FA+ + + F +E
Sbjct: 95 KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL--TTFPFTVET 152
Query: 126 FQV 128
F +
Sbjct: 153 FPI 155
>gi|440494631|gb|ELQ76996.1| RNA polymerase, 25-kDa subunit (common to polymerases I, II and
III) [Trachipleistophora hominis]
Length = 197
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 67/115 (58%), Gaps = 7/115 (6%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
++ + +R+TV++ML DRGY V ++++N + F+ K+ +K D + + +
Sbjct: 4 VRNQYLVRKTVLEMLSDRGYSVKEYQVN-DYDDFVNKYPNCVK--DTTNLRIIVQKDKEM 60
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTP----FARTCIQEIS 118
++VFF DE+K+ +K++K M+ +N+ ILV+++ ++P FA C I+
Sbjct: 61 LFVFFSDEEKMSLKSVKILVENMEKQNIKNLILVLREGISPAANKFALECPMNIT 115
>gi|296232401|ref|XP_002761575.1| PREDICTED: uncharacterized protein LOC100393628 [Callithrix
jacchus]
Length = 323
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
Q + +E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 184 QAGILSTEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 243
>gi|50550027|ref|XP_502486.1| YALI0D06457p [Yarrowia lipolytica]
gi|54036340|sp|Q6CA26.1|RPAB1_YARLI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC1; Short=RNA polymerases I, II, and III subunit
ABC1
gi|49648354|emb|CAG80674.1| YALI0D06457p [Yarrowia lipolytica CLIB122]
Length = 212
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 18/138 (13%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKA--- 59
+S ++ ++L+++ RT ++++DRGY + D E+N+S +QF+++ + M + I K
Sbjct: 1 MSSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKP---IKKKMCF 57
Query: 60 LRNDSSD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFR-AILVVQQNLTPF 109
+ + S + I+V F +E V VKTM+ + + SEN F ILV + N+TP
Sbjct: 58 MASPSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHI-SENKFATGILVYENNMTPS 116
Query: 110 ARTCIQEISAKFHLEVFQ 127
A I + A ++ FQ
Sbjct: 117 ANRLIPSV-APATIDTFQ 133
>gi|323305973|gb|EGA59708.1| Rpb5p [Saccharomyces cerevisiae FostersB]
Length = 114
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSEN 94
I +V F DE VGVKTMKT+ ++ +N
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKN 104
>gi|385301817|gb|EIF45980.1| dna-directed rna polymerases ii 24 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 194
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVINKALRNDSSDQ------IYVF 71
M++DRGY++ EI++ +QF KF ++M +R+ + D+ ++ ++V
Sbjct: 1 MVKDRGYYIPQEEIDLPLDQFREKFCDSMGVPQRKLMSFQATPTQDALEKYGDLGPLWVE 60
Query: 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
F DE VG++TMK + + +N I + QQN+TP A I ++ +E+FQ
Sbjct: 61 FCDEPSVGIQTMKNFCAHIADKNFSTGIFIYQQNMTPSATKAI-AVAEPATIEIFQ 115
>gi|414586667|tpg|DAA37238.1| TPA: hypothetical protein ZEAMMB73_455773 [Zea mays]
Length = 117
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
MK+ENVF ILVVQQ L+ FAR+ +QE+S K+HLEVFQ
Sbjct: 1 MKNENVFAGILVVQQALSAFARSAVQEVSQKYHLEVFQ 38
>gi|255576548|ref|XP_002529165.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223531389|gb|EEF33224.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 238
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E R + RRTV++MLRDRGY V EI++S ++F A G N + L + +D S
Sbjct: 39 HETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPS 98
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLE 124
++ V F + V T++ ++ +++ ILV+Q +T A + KF +E
Sbjct: 99 KRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLF--KFKVE 156
Query: 125 VFQV 128
+FQ+
Sbjct: 157 MFQI 160
>gi|297742693|emb|CBI35146.3| unnamed protein product [Vitis vinifera]
Length = 731
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+ QML DRGY V E+ S F A FG N L I L + S
Sbjct: 534 ESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPLISSPSK 593
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+I V F ++ ++ ++ E + R ILV+Q + AR + E K +E F
Sbjct: 594 KILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFF 651
Query: 127 QV 128
Q+
Sbjct: 652 QI 653
>gi|444509531|gb|ELV09326.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1 [Tupaia
chinensis]
Length = 199
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 113 EEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 165
>gi|449437743|ref|XP_004136650.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
gi|449524637|ref|XP_004169328.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Cucumis sativus]
Length = 227
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R F RRTV++ML+DRGY + I+ S +QF FG+ + L ++ A +D S
Sbjct: 29 ESHRYFLSRRTVVEMLKDRGYTINSPNIDFSLQQFRETFGQFPDVDRLKLSAAHHSDPSK 88
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEV 125
++ V F V V ++ ++ +++ IL+VQ +T A ++ S F +E+
Sbjct: 89 RVLVVFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFS--FKVEI 146
Query: 126 FQV 128
FQ+
Sbjct: 147 FQI 149
>gi|387594524|gb|EIJ89548.1| hypothetical protein NEQG_00318 [Nematocida parisii ERTm3]
gi|387596634|gb|EIJ94255.1| hypothetical protein NEPG_00922 [Nematocida parisii ERTm1]
Length = 208
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
EEI++L+ ++T+ QM++ RGY V + ++ M + F + +IN ++ S
Sbjct: 5 EEIRKLWLCQKTIFQMMKCRGYTVSEADLEMDLDLFKTSYPA-------LINTGSKHSLS 57
Query: 66 ----------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
Q++VFFPD K +K YT+ + +N+ I+V ++ L + +
Sbjct: 58 MLFQHTTMPEKQLFVFFPDNAYFKAKDIKLYTSTLGKQNIHNGIIVCKETLKAHSLKALD 117
Query: 116 EISAKFHLEVFQV 128
E ++ LE+F +
Sbjct: 118 ESRKEYDLELFYI 130
>gi|323310097|gb|EGA63291.1| Rpb5p [Saccharomyces cerevisiae FostersO]
Length = 114
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTY 86
I +V F DE VGVKTMKT+
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTF 96
>gi|224053296|ref|XP_002297750.1| predicted protein [Populus trichocarpa]
gi|222845008|gb|EEE82555.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRTV++ML+DRGY V D E+N S +F + FG + + L + +LR+
Sbjct: 35 ESYRYYISRRTVLEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSLRFSVSLRSIPHK 94
Query: 67 QIYVFFPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+ V F ++ ++T Y + E++ IL++Q + FA+ +++ F +EV
Sbjct: 95 KTLVMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKFP--FKVEV 152
Query: 126 FQV 128
FQ+
Sbjct: 153 FQI 155
>gi|8896071|gb|AAF81222.1| RPB5d [Brassica napus]
Length = 223
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 12 FRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVF 71
+ RRT M+MLRDRGY + + +IN++ ++F A +G+ + L I+ +DSS +I V
Sbjct: 29 YLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRLRISAQHCSDSSKKIAVV 88
Query: 72 FPDEQKVGVKTMKT-YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQV 128
F V V ++ + + EN+ ILV+Q ++T A ++ S F +E+FQ+
Sbjct: 89 FCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVELFS--FKVELFQL 144
>gi|194693176|gb|ACF80672.1| unknown [Zea mays]
Length = 127
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 80 VKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
+K +K Y M ENV RA+LV+QQNLTPFA++ + E+ K HLE+FQ
Sbjct: 1 MKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQ 48
>gi|320590726|gb|EFX03169.1| RNA polymerase subunit [Grosmannia clavigera kw1407]
Length = 237
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 69/142 (48%), Gaps = 23/142 (16%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMS------------------KEQFIAKFGEN 48
E+++L+R RTV +M +DRGY + + E+ +S K QF A+ E+
Sbjct: 17 ELRKLWRAWRTVHEMCQDRGYELAEDEVKISFDDFVRQFSLPDGTADRGKMQFSARPSES 76
Query: 49 MKREDLVINKALRNDSSDQ---IYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQ 104
M ++ A R D + I+V F EQ++GVK +K + SEN FRA I+V Q
Sbjct: 77 MIKKFTPPPTAARPDPPTECGTIWVEFMTEQQIGVKEIKRFLQHC-SENSFRAGIMVTQG 135
Query: 105 NLTPFARTCIQEISAKFHLEVF 126
L+ AR I +E F
Sbjct: 136 ALSAQARKVINATMMYTQIECF 157
>gi|406866728|gb|EKD19767.1| RNA polymerase subunit [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 231
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 25/143 (17%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGY------------------FVGDFEINMSKEQFIAKF 45
D E RL+R RTV +M+ DRGY + D IN QF A+
Sbjct: 14 GDREAARLWRAWRTVHEMVADRGYELSEEEVKISFADFKSTYTLADGSINRKGMQFSARP 73
Query: 46 GENMKREDLVINKALRNDSSD--QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
+ M ++ AL + +SD ++V F +E VG+K M+T+ + + ILV
Sbjct: 74 SDKMMKQ-----YALPDGTSDIGTVWVEFLNETNVGIKQMRTFAQYCSANSFATGILVTA 128
Query: 104 QNLTPFARTCIQEISAKFHLEVF 126
+TP A I ++++ +E F
Sbjct: 129 VTITPAALKIIPAVASETRIECF 151
>gi|224139746|ref|XP_002323257.1| predicted protein [Populus trichocarpa]
gi|222867887|gb|EEF05018.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRTV++ML+DRGY V EI++S + F +G+N E L + ++D S
Sbjct: 18 ESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKSDPSK 77
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEV 125
++ V F V V ++ T ++ + ILV+Q N+T A + KF +E+
Sbjct: 78 RMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKALDLF--KFKIEI 135
Query: 126 FQVN 129
FQ+
Sbjct: 136 FQIT 139
>gi|378756615|gb|EHY66639.1| hypothetical protein NERG_00279 [Nematocida sp. 1 ERTm2]
Length = 208
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
EEI++L+ ++T+ QM++ RGY V + ++ M F + +IN ++ S
Sbjct: 5 EEIRKLWLCQKTIFQMMKCRGYTVSEVDMEMDLNAFKTSYPA-------LINTGSKHSLS 57
Query: 66 ----------DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
Q++VFFPD K +K YT+ + +N+ I+V ++ L + +
Sbjct: 58 MLFQHTSMPEKQLFVFFPDNAYFKAKDIKLYTSTLGKQNIHNGIIVCKETLKAHSLKALD 117
Query: 116 EISAKFHLEVFQV 128
E + LE+F +
Sbjct: 118 ESRKDYDLELFYI 130
>gi|297816744|ref|XP_002876255.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297322093|gb|EFH52514.1| eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 223
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 9 KRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI 68
KR + R T +MLRDRGY V + E++++ +F + FGE E L I LR+D +I
Sbjct: 33 KRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPDLERLRICVPLRSDPKKKI 92
Query: 69 YVFFPDEQKVGVKTMKTYTNRMKSE-NVFRAILVVQQNLTPFAR 111
V F + + VK+++ +++ + V IL++Q + FA
Sbjct: 93 LVVFMGTEPITVKSVRAIHSQISNNVGVNAMILILQSKMNHFAH 136
>gi|440634485|gb|ELR04404.1| hypothetical protein GMDG_01480 [Geomyces destructans 20631-21]
Length = 236
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 21/145 (14%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG---------------- 46
++D E+ RL+R RTV QM+ DRGY + + E+++S +F +F
Sbjct: 12 IADREVARLWRAWRTVHQMVNDRGYELNEDELSISLAEFKHRFTNDGVPDRKKMIFTARP 71
Query: 47 --ENMKREDLVINKALRNDSS---DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
E + R A N IY+ F + VG+K M+++ + N ILV
Sbjct: 72 SVEMVARYSTPATAANPNPPKADVGTIYIEFLADTNVGIKQMRSFAQVLSQGNFHTGILV 131
Query: 102 VQQNLTPFARTCIQEISAKFHLEVF 126
++TP A + ++++ +E F
Sbjct: 132 THVHITPAAMKIVPAVASETRIECF 156
>gi|359487223|ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 221
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+ QML DRGY V E+ S F A FG N L I L + S
Sbjct: 24 ESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPLISSPSK 83
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+I V F ++ ++ ++ E + R ILV+Q + AR + E K +E F
Sbjct: 84 KILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFF 141
Query: 127 QVN 129
Q+
Sbjct: 142 QIT 144
>gi|425770508|gb|EKV08978.1| hypothetical protein PDIP_66930 [Penicillium digitatum Pd1]
gi|425771874|gb|EKV10306.1| hypothetical protein PDIG_57390 [Penicillium digitatum PHI26]
Length = 234
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
++ E+ RL+R RTV ++L DRGY V D E+ + E F AK+ + + D
Sbjct: 11 AEREMTRLWRTFRTVYELLADRGYEVSDNELVLPLEDFRAKYADPLGYPDRTKMKIQARP 70
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ +KA N D IYV F PD VG K ++ + + + N I +
Sbjct: 71 TETMKLKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFI 130
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + + + E FQ
Sbjct: 131 TQTPISPSAVRLLSGVPGRI-CEHFQ 155
>gi|255941598|ref|XP_002561568.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586191|emb|CAP93939.1| Pc16g12690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 234
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
++ E+ RL+R RTV ++L DRGY V D E+ + E F AK+ + + D
Sbjct: 11 AEREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARP 70
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ +KA N D IYV F PD VG K ++ + + + N I +
Sbjct: 71 TETMKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFI 130
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + + + E FQ
Sbjct: 131 TQTPISPSAVRLLSGVPGRI-CEHFQ 155
>gi|145230680|ref|XP_001389604.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus niger CBS 513.88]
gi|134055723|emb|CAK44096.1| unnamed protein product [Aspergillus niger]
gi|350638607|gb|EHA26963.1| hypothetical protein ASPNIDRAFT_205564 [Aspergillus niger ATCC
1015]
gi|358370671|dbj|GAA87281.1| RNA polymerase subunit [Aspergillus kawachii IFO 4308]
Length = 235
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + E+ M +F K+ + + D
Sbjct: 12 ADREMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDRNKMKISARP 71
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ +K+ N D IYV F PD VG K ++T+ + + N + +
Sbjct: 72 TEAMQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTFNHFVDENNFHTGVFI 131
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + + + E FQ
Sbjct: 132 TQTPISPSAVRLLSSMPGRI-CEHFQ 156
>gi|402467370|gb|EJW02677.1| hypothetical protein EDEG_02909 [Edhazardia aedis USNM 41457]
Length = 200
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 15 RRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPD 74
R TV++ML+DRGY ++S ++F+ ++ ++ + L + +++Q+ F D
Sbjct: 12 RETVIEMLQDRGYISNRTTKSLSLQEFMHEYSNALQDRSTIKMLVLHSKTNEQLVCHFFD 71
Query: 75 EQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQVNVF 131
E KVG+K +K + S+ + +LV ++ L+P AKF E V VF
Sbjct: 72 EAKVGLKALKLTIEGILSQKIENVVLVCKEGLSP--------AGAKFVAEFKNVEVF 120
>gi|167517495|ref|XP_001743088.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778187|gb|EDQ91802.1| predicted protein [Monosiga brevicollis MX1]
Length = 176
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 9/84 (10%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG-----ENMKREDL--VINKALRN 62
RL+R+R T+ Q+ +DRGY V ++ +++E F +FG E +R DL V+ +A +
Sbjct: 13 RLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSDLDFVVQRA--S 70
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTY 86
D +DQ+ V+F ++ KVG+ ++ +
Sbjct: 71 DPTDQLGVYFANDPKVGIAVVRDF 94
>gi|317137040|ref|XP_003190012.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Aspergillus oryzae RIB40]
Length = 235
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG----------------- 46
+D E+ RL+R RTV +ML+DRGY V + E+ +S E+F K+
Sbjct: 12 ADREMTRLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYSDPLGYPDRNKMKVQARP 71
Query: 47 -ENMKREDLVINKALRNDSSDQ---IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
E M+ + I D IYV F PD VG K ++ + + + N + +
Sbjct: 72 TEAMQHKYTAIKTNANPDPQPDCGIIYVEFCPDSTGVGTKQVRAFNHVVDENNFHTGVFI 131
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + + + E FQ
Sbjct: 132 TQTPISPSAVRLLSGVPGRI-CEHFQ 156
>gi|260943051|ref|XP_002615824.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
gi|238851114|gb|EEQ40578.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
Length = 287
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF---GENMKR-----EDLVINKALRNDSS 65
IR + + D GY++ D EINM+ ++F AK GE ++ A +
Sbjct: 88 IRTKIWKSSGDIGYYITDEEINMTLDEFKAKICPMGEAQRKLMCFQAQPTPEAAEKFPEM 147
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
++V F DE VG+KTM+ + + +N I + Q ++TP A I +S +EV
Sbjct: 148 GSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQTSITPSANKLIPTVSPAT-IEV 206
Query: 126 FQ 127
FQ
Sbjct: 207 FQ 208
>gi|119186603|ref|XP_001243908.1| hypothetical protein CIMG_03349 [Coccidioides immitis RS]
gi|303317654|ref|XP_003068829.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108510|gb|EER26684.1| DNA-directed RNA polymerase subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038831|gb|EFW20766.1| DNA-directed RNA polymerase 1 [Coccidioides posadasii str.
Silveira]
gi|392870629|gb|EAS32444.2| DNA-directed RNA polymerase II polypeptide [Coccidioides immitis
RS]
Length = 236
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + E+N+ +F K+ + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARP 72
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ + A N + IYV F D Q VG K ++ + + + +N I +
Sbjct: 73 SQTMIEKYTPLASPAKPNPVPECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKF 121
Q ++P A + I +F
Sbjct: 133 TQSPISPSAIRLLTGIPGRF 152
>gi|396500613|ref|XP_003845762.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
gi|312222343|emb|CBY02283.1| hypothetical protein LEMA_P010700.1 [Leptosphaeria maculans JN3]
Length = 412
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 21/128 (16%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-------------MK 50
+ I RL+R+ RT +M+RDRGY V + + MS +F +KFG +
Sbjct: 6 ASPSIIRLWRVWRTAKEMMRDRGYMVLEEDTTMSLAEFTSKFGREDGEPDRSRLNFSCLP 65
Query: 51 REDLVINKALRNDSSD--------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVV 102
E+++ D I+V F ++ VG+K ++ Y + + N + +++
Sbjct: 66 SEEMLAKYTPAPTKKDPNPVPQIGSIWVEFNSDENVGLKQLRDYMGHLLNGNFYSGVMIT 125
Query: 103 QQNLTPFA 110
Q +T A
Sbjct: 126 VQAMTGMA 133
>gi|154276568|ref|XP_001539129.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
gi|150414202|gb|EDN09567.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Ajellomyces
capsulatus NAm1]
Length = 236
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + EI +S ++F ++ + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 -----------LVINKALRNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+K IYV F D Q VG K ++ + + + +N I V
Sbjct: 73 SQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGIFV 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + I +F E FQ
Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQ 157
>gi|401404940|ref|XP_003881920.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Neospora caninum Liverpool]
gi|325116334|emb|CBZ51887.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Neospora caninum Liverpool]
Length = 150
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 63 DSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKF 121
D +++ V+F DE +K GVK ++ T RM+ N+ RAILV Q LT FAR I E + +
Sbjct: 10 DPDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRH 69
Query: 122 HLEVF 126
+E F
Sbjct: 70 IIENF 74
>gi|261200923|ref|XP_002626862.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239593934|gb|EEQ76515.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239607191|gb|EEQ84178.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327351148|gb|EGE80005.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 236
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + EI + ++F ++ + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 --------LVINKALRNDSSDQ---IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ L+ + + IYV F PD VG K ++ + + + +N I +
Sbjct: 73 SQAMMDRYTPLPTTLKPNPVPECGTIYVEFCPDIHSVGTKQVRAFNHFIDEQNYHTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + I +F E FQ
Sbjct: 133 SQTPISPSAIRVLNSIPGRF-CEHFQ 157
>gi|452981679|gb|EME81439.1| hypothetical protein MYCFIDRAFT_70882 [Pseudocercospora fijiensis
CIRAD86]
Length = 227
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 25/149 (16%)
Query: 3 LSDE---EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE------------ 47
+SDE E+ RL+R+ RT QM DRGY + D E N+S E+F ++ +
Sbjct: 1 MSDENSRELSRLWRVLRTTKQMCSDRGYELTDEECNISLEEFRQQYADESGAPSRVKMAF 60
Query: 48 NMKREDLVINK--ALRNDSSDQ-------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRA 98
+ D +I K ++ D+ I+V F ++ +G+K +K + + + +N +
Sbjct: 61 TARPSDAMIKKYTPIQRPGQDEKPPEIGTIHVEFSNDASIGIKQLKQFASNLADKNYYTG 120
Query: 99 ILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
I V Q T A I + +E+F+
Sbjct: 121 IYVSQVQPTSAALKIIPSVHP-LIMEIFK 148
>gi|440302517|gb|ELP94824.1| DNA-directed RNA polymerase I, II, and III subunit RPABC1, putative
[Entamoeba invadens IP1]
Length = 217
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG---ENMKREDLVINKALRNDS 64
+ R++ + +TV+ ML+DRGY D + + ++F + G + + R L I KA+R S
Sbjct: 16 LTRVYHVWKTVLDMLKDRGYVTNDLDHQTTLDEFRERVGVGADGVDRGKLTI-KAVREGS 74
Query: 65 SDQ-IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTP----FARTCIQEISA 119
+D I V F + K+ + ++Y ++ + RAI+V + L+ F + Q++
Sbjct: 75 ADDGIIVLFAKDDKMKTEVFRSYAEEVQGQECKRAIVVYRGQLSSVIVQFVNSSEQKVKW 134
Query: 120 KFHLE 124
+ LE
Sbjct: 135 ELLLE 139
>gi|226289047|gb|EEH44559.1| DNA-directed RNA polymerases I [Paracoccidioides brasiliensis Pb18]
Length = 236
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ +L+R RTV +ML DRGY V + EI + E+F ++ + + D
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 -----------LVINKALRNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
++K IYV F D Q VG K ++ + + + +N I +
Sbjct: 73 SQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + I +F E FQ
Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQ 157
>gi|154292350|ref|XP_001546750.1| hypothetical protein BC1G_14664 [Botryotinia fuckeliana B05.10]
Length = 242
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 24/146 (16%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-------------MKR 51
D E +L+R RTV +M++DRGY + + E+NMS + F +KF N
Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFSATPS 75
Query: 52 EDLVINKAL------RNDSSDQIYVFFPD-----EQKVGVKTMKTYTNRMKSENVFRAIL 100
E ++ A+ N ++ +I + + + +G+K M+T+ + N IL
Sbjct: 76 EAMIARYAVAPTAENPNPTTSEIGTIWIEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVF 126
+ + A+ I ++++ +E F
Sbjct: 136 IAPVAPSGPAQKIIPAVASETRIETF 161
>gi|225560287|gb|EEH08569.1| RNA polymerase subunit [Ajellomyces capsulatus G186AR]
gi|240279038|gb|EER42544.1| RNA polymerase subunit [Ajellomyces capsulatus H143]
gi|325090297|gb|EGC43607.1| RNA polymerase subunit [Ajellomyces capsulatus H88]
Length = 236
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + EI + ++F ++ + + D
Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 -----------LVINKALRNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+K IYV F D Q VG K ++ + + + +N I V
Sbjct: 73 SQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGIFV 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + I +F E FQ
Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQ 157
>gi|429965029|gb|ELA47026.1| hypothetical protein VCUG_01471 [Vavraia culicis 'floridensis']
Length = 223
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 65/113 (57%), Gaps = 11/113 (9%)
Query: 12 FRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVF 71
+ +R+T+++ML DRGY + ++++ ++F+ K+ +K D + + + ++VF
Sbjct: 34 YLVRKTMLEMLSDRGYPIKEYQMK-DYDEFVNKYPSCVK--DTSNLRIIVQKDKEMLFVF 90
Query: 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
F DE+K+ +K +K ++ +N+ I+V+++ ++P A +KF LE
Sbjct: 91 FSDEEKMSLKNVKILVENIEKQNIKNLIVVLREGISPAA--------SKFALE 135
>gi|156061727|ref|XP_001596786.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980]
gi|154700410|gb|EDO00149.1| hypothetical protein SS1G_03009 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 242
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED-------LVIN 57
D E +L+R RTV +M++DRGY + + E+NMS + F AKF N D +
Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFSATPS 75
Query: 58 KAL------------RNDSSDQIYVFFPD-----EQKVGVKTMKTYTNRMKSENVFRAIL 100
+A+ N ++ +I + + + +G+K M+T+ + N IL
Sbjct: 76 EAMIAKYANAPTPQNPNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVF 126
+ + A+ I +++ +E F
Sbjct: 136 IAPVPPSGPAQKIIPAVASDTRIETF 161
>gi|452840713|gb|EME42651.1| hypothetical protein DOTSEDRAFT_73472 [Dothistroma septosporum
NZE10]
Length = 228
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 24/138 (17%)
Query: 4 SDE---EIKRLFRIRRTVMQMLRDRGYFVGDFEINMS------------------KEQFI 42
SDE E+ RL+R+ RT QM DRGY + + E N+S + F
Sbjct: 3 SDEVSRELSRLWRVLRTTKQMCADRGYELTEEECNISLDDFRQQYADETGAPQRTRMAFT 62
Query: 43 AKFGENMKREDLVINKALRNDSSDQ---IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAI 99
A+ ENM+++ + + + +++ I+V F ++ +G+K +K + + +N + I
Sbjct: 63 ARPSENMQKKYMPLQRPGQSEGEPAIGTIHVEFSNDANIGIKHIKQFAQVLSEKNYYTGI 122
Query: 100 LVVQQNLTPFARTCIQEI 117
V TP A I I
Sbjct: 123 FVSAVAPTPAAMKIIPSI 140
>gi|149034609|gb|EDL89346.1| rCG29511, isoform CRA_b [Rattus norvegicus]
Length = 167
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 17 TVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----MKREDLVINKALRNDSSDQIYVF 71
+ Q+ DRGY V E++ + E+F A+FG+ +R DL + A +D +DQ++VF
Sbjct: 8 SASQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVF 67
Query: 72 FPDEQK-VGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108
FP E G + + + F + + +++P
Sbjct: 68 FPGEGPWAGSSGILWGPPVLVAAACFVPVFPWEASISP 105
>gi|443920437|gb|ELU40353.1| hypothetical protein AG1IA_05623 [Rhizoctonia solani AG-1 IA]
Length = 133
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 18/102 (17%)
Query: 25 RGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMK 84
+GY V + E+NM + F + F +D ++QI++FF DE+ V +KT+
Sbjct: 18 QGYLVAEDEMNMDIQTFKSTF----------------DDPTNQIFIFFADEKNVTIKTI- 60
Query: 85 TYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
+ + + + I+V + +TP AR I +S+++ LE F
Sbjct: 61 -FLGILDEKGITHGIIVFMEKMTPSARKVISAMSSQYSLEEF 101
>gi|300175741|emb|CBK21284.2| unnamed protein product [Blastocystis hominis]
Length = 206
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 12 FRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDL-VINKALRNDSSDQIYV 70
F R+ ++M+ RGY + + + F+++FG E L VI K L N +D +
Sbjct: 12 FIARKNAIKMMTKRGYVLRMTDDMTKYDAFLSRFGNEPDYESLSVIGKRLSN-KNDGCLL 70
Query: 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
F D +G ++ +++ EN+ AI+VV+ + A+ ++ FHL++F+
Sbjct: 71 IFNDSPSLGAPAIREIIEQLEKENISSAIIVVKNRIPSTAKHACKKFEPIFHLDLFK 127
>gi|407928431|gb|EKG21288.1| RNA polymerase subunit H/Rpb5 [Macrophomina phaseolina MS6]
Length = 227
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 25/137 (18%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINK 58
T ++ E RL+R RT +M+ DRGY + + E ++ ++F AKFG++ + R+ L
Sbjct: 7 TEAEREASRLWRAWRTAHEMIADRGYIMSESEYKITLDEFRAKFGDSSGYVDRKQL---- 62
Query: 59 ALRNDSSDQ------------------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAIL 100
A + SD+ I+V F +Q +GVK ++ + + + N I
Sbjct: 63 AFSANPSDEMKQKHFNPRKPKESEVGNIWVEFNGDQNIGVKQLRNFGHTLNEHNFSSGIF 122
Query: 101 VVQQNLTPFARTCIQEI 117
+ +T A+ I +
Sbjct: 123 ITAVPVTGAAQKIIPSL 139
>gi|357509489|ref|XP_003625033.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|124359979|gb|ABN07995.1| RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal
[Medicago truncatula]
gi|355500048|gb|AES81251.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 248
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRTV++ML+DRGY + EI +S + F G++ + L + + S
Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSK 109
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V ++ ++ E++ IL+VQ +T A + +S F +E+
Sbjct: 110 RILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS--FKVEI 167
Query: 126 FQV 128
FQ+
Sbjct: 168 FQI 170
>gi|367046000|ref|XP_003653380.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
gi|347000642|gb|AEO67044.1| hypothetical protein THITE_2170468 [Thielavia terrestris NRRL 8126]
Length = 234
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEI------------------NMSKEQFIAKFGE 47
+E+ RL+R RT+ +M++DRGY + + E+ N +K QF A+ E
Sbjct: 12 KEVTRLWRAWRTIHEMVQDRGYELAEEEVKISLDRFRAEYTNDDGSPNRAKMQFSARPSE 71
Query: 48 NMKREDLVINKALRNDSSDQ---IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
M ++ A D + + I+V F PD+ +G+ MK + N ILV
Sbjct: 72 AMIKKFTPPPTAANPDPAPECGTIWVEFCPDKGSIGISVMKKFVEHCAQNNFRAGILVTA 131
Query: 104 QNLTPFARTCIQEISAKFHL 123
L+ AR + ++++F L
Sbjct: 132 VALSAQARK-VMTVTSQFTL 150
>gi|295671500|ref|XP_002796297.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284430|gb|EEH39996.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 236
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ +L+R RTV +ML DRGY V + EI + ++F ++ + + D
Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72
Query: 54 -----------LVINKALRNDSSDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
++K IYV F D Q VG K ++ + + + +N I +
Sbjct: 73 SQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + I +F E FQ
Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQ 157
>gi|83315223|ref|XP_730700.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23490505|gb|EAA22265.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 91
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F EN K R + I + +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVFFPDE-QKVGVKTMKTYTNRMKS 92
++++I V+F DE +K GVK ++ Y ++K
Sbjct: 62 ANNKIIVYFVDEVKKTGVKPLREYNKKIKD 91
>gi|389628590|ref|XP_003711948.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
gi|351644280|gb|EHA52141.1| DNA-directed RNA polymerase I [Magnaporthe oryzae 70-15]
Length = 230
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 9 KRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALRNDS- 64
++L+R RT+ QML DRGY + + E N+S E+F+A F + N+ + L + A +D+
Sbjct: 11 RKLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFS-ARPSDAM 69
Query: 65 ------------------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNL 106
I+V F +E+K+GV K + + ILV Q L
Sbjct: 70 LKLHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGAL 129
Query: 107 TPFARTCIQEISA------KFHLEVFQVNV 130
+ AR + + F LE VN+
Sbjct: 130 SSGARRALSATGSGDNKVEAFMLEDLLVNI 159
>gi|258563314|ref|XP_002582402.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907909|gb|EEP82310.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 239
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
++ E+ RL+R +TV +ML DRGY V + E+ +S F +K+ + + D +R
Sbjct: 13 ANREMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRIS 72
Query: 64 SSDQ------------------------IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRA 98
+ IYV F D Q VG K ++ + + + +N
Sbjct: 73 ARPSQAMIEKYTPLPSPAKPNPVAECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTG 132
Query: 99 ILVVQQNLTPFARTCIQEISAKF 121
I + Q ++P A + I +F
Sbjct: 133 IFITQSPISPSAVRLLTGIPGRF 155
>gi|440470981|gb|ELQ40020.1| DNA-directed RNA polymerases I [Magnaporthe oryzae Y34]
gi|440484880|gb|ELQ64891.1| DNA-directed RNA polymerases I [Magnaporthe oryzae P131]
Length = 259
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 9 KRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALRNDS- 64
++L+R RT+ QML DRGY + + E N+S E+F+A F + N+ + L + A +D+
Sbjct: 11 RKLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFS-ARPSDAM 69
Query: 65 ------------------SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNL 106
I+V F +E+K+GV K + + ILV Q L
Sbjct: 70 LKLHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGAL 129
Query: 107 TPFARTCIQEISA------KFHLEVFQVNV 130
+ AR + + F LE VN+
Sbjct: 130 SSGARRALSATGSGDNKVEAFMLEDLLVNI 159
>gi|340959991|gb|EGS21172.1| RNA polymerases I, II, and III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 547
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 31/145 (21%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDS 64
++E+ RL+R RTV +M++DRGY + D E+ +S E+F A++ ED N+A S
Sbjct: 11 EKEVTRLWRAWRTVHEMVQDRGYELADEEVKISLERFKAEY----TNEDGSPNRAKMQFS 66
Query: 65 S-------------------------DQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRA 98
+ I+V F P++ +G+ MK + N
Sbjct: 67 ARPSEAMIKKFTPPPTPQNPDPQPECGTIWVEFCPEKTSIGISVMKKFVEHCAQNNFKAG 126
Query: 99 ILVVQQNLTPFARTCIQEISAKFHL 123
ILV L+ AR + ++++F L
Sbjct: 127 ILVTAVALSSQARK-VMTVTSQFTL 150
>gi|154411936|ref|XP_001579002.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
gi|121913204|gb|EAY18016.1| RNA polymerase Rpb5, N-terminal domain containing protein
[Trichomonas vaginalis G3]
Length = 202
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62
+S E+ FRI T+ QM+RDRGY V + +S ++F + N +N+ N
Sbjct: 1 MSSEKESMYFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHN----LNECYSN 56
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQN-LTPFA 110
++I FF +++ KT++T M V RAI++ + LTP A
Sbjct: 57 MEGERILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTA 105
>gi|149595717|ref|XP_001520959.1| PREDICTED: hypothetical protein LOC100092316, partial
[Ornithorhynchus anatinus]
Length = 157
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 15 RRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----MKREDLVINKALRNDSSDQIY 69
R Q+ DRGY V E++ + E+F +FG+ +R DL + A +D +DQ++
Sbjct: 46 RNAPFQLCHDRGYLVTQDELDQTLEEFKGQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 105
Query: 70 VFFPDE 75
VFFP E
Sbjct: 106 VFFPGE 111
>gi|378727418|gb|EHY53877.1| DNA-directed RNA polymerase II subunit E [Exophiala dermatitidis
NIH/UT8656]
Length = 238
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 23/147 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---------MKREDL 54
++E+ RL+R RTV++ML DRGY + E+ ++++ F KFG+ MK + +
Sbjct: 13 GEKELTRLWRTWRTVLEMLVDRGYAIAQDELAITRDDFQRKFGDPSTGHVERRLMKLQAV 72
Query: 55 VINKALRND-------------SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ ++ D ++ I+V F E +G+K ++ + + + I +
Sbjct: 73 PTEEMIKRDTPRPTKSNPNPQTTAGTIWVEFSPETTIGIKHLRAFAQHLDANKFTTGIFI 132
Query: 102 VQQNLTPFARTCIQEISAK-FHLEVFQ 127
+T A + ++ + E FQ
Sbjct: 133 TISPVTAAALRAFEPLAERGITAEWFQ 159
>gi|67516941|ref|XP_658356.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|40746238|gb|EAA65394.1| hypothetical protein AN0752.2 [Aspergillus nidulans FGSC A4]
gi|259488970|tpe|CBF88854.1| TPA: RNA polymerase subunit (AFU_orthologue; AFUA_1G14110)
[Aspergillus nidulans FGSC A4]
Length = 235
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF-GEN--MKREDLVI---- 56
++ E R++R RTV +ML+DRGY V + E+ + ++F K+ GE RE L I
Sbjct: 12 AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQARP 71
Query: 57 ------------NKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ R+ D IY+ F PD+ +G K ++T+ + + N I +
Sbjct: 72 TEAMKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFI 131
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
+ ++P A + I + E FQ
Sbjct: 132 TKTPISPSAVRLLSGIPGRI-CEHFQ 156
>gi|326430754|gb|EGD76324.1| hypothetical protein PTSG_01026 [Salpingoeca sp. ATCC 50818]
Length = 207
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 20 QMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ--IYVFFPDEQK 77
QM DRGY V + M +++ G+ ++RE ++ +R DS D + V+FP E
Sbjct: 18 QMCHDRGYLVTQDMMEMPYDRWEEMHGDKIRRE---LSYYVRKDSGDPTGLLVYFPVEPD 74
Query: 78 VGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI-SAKFHLEVF 126
V +K+ R+ EN R I+V + L AR ++ + + F EVF
Sbjct: 75 VSTVLIKSLHERITKENSKRVIIVYRGKLAGAARKAMEVLKDSGFVFEVF 124
>gi|357456709|ref|XP_003598635.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
gi|355487683|gb|AES68886.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Medicago truncatula]
Length = 124
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
S+ E R F R+T+M ML DRGY V + ++ +S +F ++FGE K L ++ +LR++
Sbjct: 23 SNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFPKPHTLGVSVSLRSN 82
Query: 64 SSDQI 68
S ++
Sbjct: 83 PSIKV 87
>gi|388510192|gb|AFK43162.1| unknown [Medicago truncatula]
Length = 248
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRTV++ML+DRGY + EI +S + F G++ + L + + S
Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSK 109
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRM-KSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V ++ ++ E++ IL+VQ +T A + +S F +E+
Sbjct: 110 RILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS--FKVEI 167
Query: 126 FQV 128
Q+
Sbjct: 168 LQI 170
>gi|351723899|ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT ++ML+DRGY + EI++S F G+ + L ++ +SS
Sbjct: 39 ESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLRLSLTHATNSSK 98
Query: 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEV 125
+I V F V V ++ ++ + + IL+V+ ++T A + S F +E+
Sbjct: 99 RILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFS--FKVEI 156
Query: 126 FQVN 129
FQ+
Sbjct: 157 FQIT 160
>gi|121701167|ref|XP_001268848.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
gi|119396991|gb|EAW07422.1| RNA polymerase subunit [Aspergillus clavatus NRRL 1]
Length = 234
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + EI + E+F K+ + + D
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARP 70
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ A + D IYV F D VG K ++ + + + N + +
Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRAFNHFVDENNFHTGVFI 130
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + I + E FQ
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQ 155
>gi|242778512|ref|XP_002479254.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
gi|218722873|gb|EED22291.1| RNA polymerase subunit [Talaromyces stipitatus ATCC 10500]
Length = 236
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFG------------------EN 48
E+ RL+R RTV +MLRDRGY + + E+ + + F KFG E
Sbjct: 15 EMARLWRTWRTVHEMLRDRGYEMSEEEVKIDYQDFANKFGGEHGYPSRAKMTIAAMPSEA 74
Query: 49 MKREDLVINKALRNDSS----DQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
MK + + K + + IYV F D VG K ++ + + + N I + +
Sbjct: 75 MKAKYTPLKKRVSDPDPVPDCGPIYVQFCEDTTGVGAKQVRAFNHLVDEGNYHSGIFITR 134
Query: 104 QNLTPFA 110
++P A
Sbjct: 135 TAISPSA 141
>gi|326488034|dbj|BAJ89856.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 108
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
+ +E RLF RRT ++MLRDRGY V + E+ + +F A + + + E L + L +D
Sbjct: 25 ASQESHRLFLARRTALEMLRDRGYSVPESELARTLPEFRAWWAQEPEIERLSFSTFLASD 84
Query: 64 SSDQIYVFF 72
SD++ +
Sbjct: 85 HSDKVSLLL 93
>gi|356541565|ref|XP_003539245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Glycine max]
Length = 214
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 10 RLFRIRRTVMQMLRDRGY-FVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQI 68
R F RRT+++ML+DRGY V ++ S +F ++FG+N + L + ++ S+ +
Sbjct: 18 RYFLSRRTLLEMLQDRGYDVVQHANLSPSLAEFRSRFGQNPNPQTLAFCVSHLSNPSNTV 77
Query: 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
V F + T+ ++ + + ILVVQ +T FA+ ++ S F +E+ +
Sbjct: 78 QVVFAGTDDIRKGTVNEICTQIADKGRLKGLILVVQSKMTSFAKKDLE--SLPFKVEIIR 135
Query: 128 VN 129
++
Sbjct: 136 ID 137
>gi|344239060|gb|EGV95163.1| DNA-directed RNA polymerases I, II, and III subunit RPABC1
[Cricetulus griseus]
Length = 112
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 70 VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
VFFP+E V +KT+K Y ++ EN+ R ++VVQ+ + P + + +++ K+ LE F
Sbjct: 3 VFFPEEPTVDIKTIKVYCQCIQEENITRVLIVVQEGMMPSDKQSLVDMAPKYVLEQF 59
>gi|449299839|gb|EMC95852.1| hypothetical protein BAUCODRAFT_34618, partial [Baudoinia
compniacensis UAMH 10762]
Length = 171
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 22/142 (15%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMS------------------KEQFIAKFGEN 48
E RL+RI RT QM DRGY + + E N+S + F A+
Sbjct: 9 EQSRLWRILRTAKQMCYDRGYELTEDECNISFDDFKTQYCDESGAPQRTRMNFTARPTPE 68
Query: 49 MKREDLVINKALRNDSSDQ---IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQN 105
M ++ + K D + I+V F + +G+K +KT+ + +N+ I V Q
Sbjct: 69 MNKKYSPLPKPSNPDPAPDIGTIFVQFNSDPNIGIKHLKTFAQLLSEKNLHTGIYVSQAA 128
Query: 106 LTPFARTCIQEISAKFHLEVFQ 127
T A I I A +E+F+
Sbjct: 129 PTASALKIIPTI-APLVMEIFR 149
>gi|345562747|gb|EGX45783.1| hypothetical protein AOL_s00140g99 [Arthrobotrys oligospora ATCC
24927]
Length = 225
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRE-------------- 52
E+ RL+R RT +M+ DRGY + + E+N+S + F K+ ++ R
Sbjct: 8 EVSRLYRAWRTAHEMIADRGYDLTEEELNISLDDFKVKYCDSDGRPQRKKMTFSAKPSQS 67
Query: 53 ------DLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNL 106
D + + N S I++ F E +G+K M+ + + + N + + L
Sbjct: 68 MIDRNTDTQTGQLIPN-SCGTIWIEFSPEPSIGIKQMRVFAHTIVEHNFHTGVFITMAPL 126
Query: 107 TPFARTCIQEISA 119
T A I ++
Sbjct: 127 TSSAAKIIPTVAP 139
>gi|429961418|gb|ELA40963.1| hypothetical protein VICG_01993 [Vittaforma corneae ATCC 50505]
Length = 206
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
++ L+ R T+++ML +RGY + ++ + F+++F N + +N S D
Sbjct: 9 HMRELWLARNTIIEMLNERGYSSSNMPLDYA--SFVSQF-PNAENNPSTLNFVC---SKD 62
Query: 67 QIY-VFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
Q + V F E K+ K+++T TN ++ + IL+ L P + ++ I K +LE
Sbjct: 63 QPFAVHFTSEDKLSKKSLETLTNEYAAQGIANVILITSAKLNPACKVLMKSI--KLNLEH 120
Query: 126 FQV 128
F V
Sbjct: 121 FLV 123
>gi|171688464|ref|XP_001909172.1| hypothetical protein [Podospora anserina S mat+]
gi|170944194|emb|CAP70304.1| unnamed protein product [Podospora anserina S mat+]
Length = 235
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 22/146 (15%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF--GENMKREDL------ 54
+ D+E+ RL+R RT+ +M+ DRGY + + EI M ++F KF G+ +
Sbjct: 10 IHDKEVSRLWRAWRTIHEMVADRGYELAEEEIKMPLDEFKRKFTNGDGSPNRSIMSFSAR 69
Query: 55 ----VINK------ALRNDSSDQ---IYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAIL 100
+I K A D + + I+V F P++ +G+ MK + + + IL
Sbjct: 70 PSASMIKKFTPPPTASNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCANNSYKAGIL 129
Query: 101 VVQQNLTPFARTCIQEISAKFHLEVF 126
V L+ AR + S +E F
Sbjct: 130 VTAVALSAQARKVMTVTSQYTLIECF 155
>gi|212533613|ref|XP_002146963.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
gi|210072327|gb|EEA26416.1| RNA polymerase subunit [Talaromyces marneffei ATCC 18224]
Length = 236
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 27/151 (17%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINK----- 58
E+ RL+R RTV +MLRDRGY + + E+ + + F KF ++ RE + I
Sbjct: 15 EMARLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIPSEA 74
Query: 59 ------ALRNDSSD--------QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
L+ +D QI+V F D VG K ++ + + + N I + +
Sbjct: 75 MKAKYTPLKKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITR 134
Query: 104 QNLTPFA----RTCIQEISAKFHLEVFQVNV 130
++P A + I I F VN+
Sbjct: 135 TAISPSAVRLLNSAIGHICEHFQESDLLVNI 165
>gi|300120101|emb|CBK19655.2| DNA-directed RNA polymerase II [Blastocystis hominis]
Length = 215
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLV---INKALRNDSSD 66
+LFR+R+TV +ML RGY + D + +M+ + F+ + + DL+ I D D
Sbjct: 11 KLFRVRKTVFKMLSKRGYAISDKDQSMTLDTFVKDYCDAETNPDLLKLTIISRKTEDEDD 70
Query: 67 QIYVFF--PDEQKVGVKTMKTYTNRMKS-ENVFRAILVVQQNLT 107
++ VFF ++K+ K ++ ++ S ENV R ILV LT
Sbjct: 71 RVVVFFIRSVDKKINGKDFESKIEKVSSEENVKRIILVFGGELT 114
>gi|119495104|ref|XP_001264345.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
gi|119412507|gb|EAW22448.1| RNA polymerase subunit [Neosartorya fischeri NRRL 181]
Length = 234
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 23/146 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV +ML DRGY V + EI + ++F K+ + + D
Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARP 70
Query: 54 ---------LVINKALRNDSSD--QIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ A + D IYV F D VG K ++ + + + N + +
Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFI 130
Query: 102 VQQNLTPFARTCIQEISAKFHLEVFQ 127
Q ++P A + I + E FQ
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQ 155
>gi|296822412|ref|XP_002850281.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
gi|238837835|gb|EEQ27497.1| DNA-directed RNA polymerase II polypeptide [Arthroderma otae CBS
113480]
Length = 236
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED---------- 53
+D E+ RL+R RTV ++L DRGY V + E+ +S +F ++ + + D
Sbjct: 13 ADREMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDRNKMRISARP 72
Query: 54 -----------LVINKALRNDSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
+K I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKF 121
Q ++P A + I +F
Sbjct: 133 TQSPISPSAIRLLTAIPGRF 152
>gi|326480400|gb|EGE04410.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 276
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--------------- 48
+D E+ RL+R RTV ++L DRGY V + E+ +S F ++ +
Sbjct: 13 ADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARP 72
Query: 49 ----MKREDLVINKALRNDSSD--QIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
M+R + + N + I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKF 121
Q ++P A + I +F
Sbjct: 133 TQSPISPSAIRLLTAIPGRF 152
>gi|367022836|ref|XP_003660703.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
gi|347007970|gb|AEO55458.1| hypothetical protein MYCTH_2314258 [Myceliophthora thermophila ATCC
42464]
Length = 234
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
+E+ RL+R RTV +M++DRGY + + E+ +S ++F A++ ED N+A S+
Sbjct: 12 KEVTRLWRAWRTVHEMVQDRGYELAEDEVKISLDRFRAEY----TNEDGSPNRAKMQFSA 67
Query: 66 -------------------------DQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAI 99
I+V F P++ +G+ MK + + N I
Sbjct: 68 RPSEAMIKKFTPPPTPSNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCSANNFKAGI 127
Query: 100 LVVQQNLTPFARTCIQEISAKFHL 123
LV L+ AR + ++++F L
Sbjct: 128 LVTAVALSAQARK-VMTVTSQFTL 150
>gi|302503318|ref|XP_003013619.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|302665750|ref|XP_003024482.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|327294261|ref|XP_003231826.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
gi|291177184|gb|EFE32979.1| hypothetical protein ARB_00066 [Arthroderma benhamiae CBS 112371]
gi|291188539|gb|EFE43871.1| hypothetical protein TRV_01312 [Trichophyton verrucosum HKI 0517]
gi|326465771|gb|EGD91224.1| DNA-directed RNA polymerase II [Trichophyton rubrum CBS 118892]
Length = 236
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--------------- 48
+D E+ RL+R RTV ++L DRGY V + E+ +S F ++ +
Sbjct: 13 ADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARP 72
Query: 49 ----MKREDLVINKALRNDSSD--QIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
M+R + + N + I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKF 121
Q ++P A + I +F
Sbjct: 133 TQSPISPSAIRLLTAIPGRF 152
>gi|326475256|gb|EGD99265.1| DNA-directed RNA polymerase II [Trichophyton tonsurans CBS 112818]
Length = 228
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--------------- 48
+D E+ RL+R RTV ++L DRGY V + E+ +S F ++ +
Sbjct: 13 ADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLSDFKQRYSDALGFPDRNKMRISARP 72
Query: 49 ----MKREDLVINKALRNDSSD--QIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
M+R + + N + I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKF 121
Q ++P A + I +F
Sbjct: 133 TQSPISPSAIRLLTAIPGRF 152
>gi|358393858|gb|EHK43259.1| hypothetical protein TRIATDRAFT_301149 [Trichoderma atroviride IMI
206040]
Length = 233
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKE------------------QFIAKFGE 47
+E+ RL+R RTV +M+ DR Y + + E+++S E QF A+ +
Sbjct: 12 KEVVRLWRAWRTVHEMVADREYELAEDEVSISLERFRDEYCHPDGSVNRAKLQFSARPSD 71
Query: 48 NMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
+M R++ A D I+V F +++ GV ++ + + N I+V
Sbjct: 72 SMLRKNTPPATASNPDPVPDCGPIWVEFLTDKQFGVSQIRNFAKYTITNNYKTGIMVTPV 131
Query: 105 NLTPFARTCIQEISAKFHLEVF 126
L+P AR + + +E F
Sbjct: 132 ALSPAARKSLASVENLAKIECF 153
>gi|315056263|ref|XP_003177506.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311339352|gb|EFQ98554.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 236
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN--------------- 48
+D E+ RL+R RTV ++L DRGY V + E+ +S F ++ +
Sbjct: 13 ADREMTRLWRTWRTVFELLLDRGYEVTEEEVKISLGDFKQRYSDALGFPDRNKMRISARP 72
Query: 49 ----MKREDLVINKALRNDSSD--QIYVFFPDE-QKVGVKTMKTYTNRMKSENVFRAILV 101
M+R + + N + I+V F E Q VG K ++ + + +N I +
Sbjct: 73 SQAMMERYTPLPTPSKPNTVPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIFI 132
Query: 102 VQQNLTPFARTCIQEISAKF 121
Q ++P A + I +F
Sbjct: 133 TQSPISPSAIRLLTAIPGRF 152
>gi|296424747|ref|XP_002841908.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638159|emb|CAZ86099.1| unnamed protein product [Tuber melanosporum]
Length = 220
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 23/142 (16%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKF--GENMK-REDLVINKAL 60
+ E RL+R RTV +M +DRGY + + EI ++ E+F ++ GE R++L
Sbjct: 3 PERESSRLWRAWRTVHEMAKDRGYEISEEEITITLEEFRHQYCDGEGRPIRKNLTFKA-- 60
Query: 61 RNDSSDQI----------------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
N S I +V F E +G+K M+ + + + SEN I +
Sbjct: 61 -NPSPSMIKQHAPAPNQPATVGTLWVEFSAESNIGIKHMRAFAHTINSENFHTGIFICSS 119
Query: 105 NLTPFARTCIQEISAKFHLEVF 126
+ TP A + + +EVF
Sbjct: 120 HPTPAAMKIVPTVLPSV-IEVF 140
>gi|340377817|ref|XP_003387425.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Amphimedon queenslandica]
Length = 143
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 86 YTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
Y RM+ EN+ RAI+VVQQ +TP A+ + +++ K+ LE F
Sbjct: 23 YCGRMQEENISRAIIVVQQGMTPSAKQALVDMAPKYILEQF 63
>gi|85105978|ref|XP_962076.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
gi|28923670|gb|EAA32840.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
crassa OR74A]
Length = 234
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKA 59
T + +E+ RL+R RTV +M++DRGY + + E+ +S E+F A++ ED N+A
Sbjct: 8 TSASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEY----TNEDGTPNRA 61
>gi|238488993|ref|XP_002375734.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
gi|220698122|gb|EED54462.1| DNA-directed RNA polymerase II, putative [Aspergillus flavus
NRRL3357]
Length = 79
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM 49
+D E+ RL+R RTV +ML+DRGY V + E+ +S E+F K+ + +
Sbjct: 12 ADREMTRLWRTWRTVFEMLQDRGYEVTEEEVQISLEEFKQKYSDPL 57
>gi|398396120|ref|XP_003851518.1| hypothetical protein MYCGRDRAFT_43980, partial [Zymoseptoria
tritici IPO323]
gi|339471398|gb|EGP86494.1| hypothetical protein MYCGRDRAFT_43980 [Zymoseptoria tritici IPO323]
Length = 218
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 21/129 (16%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN-----------MKREDLVI-- 56
RL+R+ RT QM DRGY + + E N+S E+F + + + R +
Sbjct: 2 RLWRVLRTTKQMCADRGYELTEAECNISLEEFRSLYADESGVPQRTKMAFTARPSAAMIK 61
Query: 57 --------NKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108
N+ + I+V F +E +G+K +K + + +N + I V Q T
Sbjct: 62 KYTPFTRPNQPEKEAEIGNIHVEFSNESNIGIKHIKNFAQLLSEKNYYTGIFVTQVAPTS 121
Query: 109 FARTCIQEI 117
A I +
Sbjct: 122 AALKIIPSV 130
>gi|336471719|gb|EGO59880.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2508]
gi|350292835|gb|EGZ74030.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 234
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKA 59
T + +E+ RL+R RTV +M++DRGY + + E+ +S E+F A++ ED N+A
Sbjct: 8 TSASKEVSRLWRAWRTVHEMVQDRGYELSEDEVKISLERFKAEY----TNEDGTPNRA 61
>gi|336267790|ref|XP_003348660.1| hypothetical protein SMAC_01684 [Sordaria macrospora k-hell]
gi|380093918|emb|CCC08134.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 234
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 24/148 (16%)
Query: 2 TLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKE------------------QFIA 43
T + +E+ RL+R RTV +M++DRGY + + E+ +S E QF A
Sbjct: 8 TSASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKLEYTNEDGTPNRGKLQFSA 67
Query: 44 KFGENM-KREDLVINKALRNDSSD--QIYVFFPDEQ-KVGVKTMKTYTNRMKSENVFRA- 98
+ E M K+ + N + + I+V F E+ +GV MK + S+N F+A
Sbjct: 68 RPSEAMIKKFTAPPTPSNPNPAPECGTIWVEFCTEKGSIGVSVMKKFVTHC-SDNKFKAG 126
Query: 99 ILVVQQNLTPFARTCIQEISAKFHLEVF 126
I + L+ AR + S +E F
Sbjct: 127 IFITAVPLSAQARKVMSVTSQYTQVECF 154
>gi|401827017|ref|XP_003887601.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
gi|392998607|gb|AFM98620.1| DNA-directed RNA polymerase subunit Rpb5 [Encephalitozoon hellem
ATCC 50504]
Length = 200
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 7/123 (5%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-KREDLVINKALRNDSS 65
E++ L R T ++M++DRGY E+ E F K+ + KR L + D
Sbjct: 4 ELRALCLSRNTTIEMVKDRGYTTTQ-EVQ-PLESFREKYPFALTKRSSL---NFVCVDVD 58
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+ + F D++K+G K+ + ++ + +N+F IL++ Q +P + I ++AKF++E+
Sbjct: 59 RPVAIHFGDDEKMGKKSFEGLLSQYEKDNIFHLILILPQMPSPAVMSMIA-LNAKFNVEI 117
Query: 126 FQV 128
F V
Sbjct: 118 FLV 120
>gi|322706717|gb|EFY98297.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Metarhizium
anisopliae ARSEF 23]
Length = 232
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINM------------------SKEQFIAKFGE 47
+E+ RL+R RTV +M+ DR Y + + E+N+ SK QF A+ +
Sbjct: 11 KEVVRLWRAWRTVHEMVADREYELAEEEVNISLDRFRDEYCNPDGSVNRSKLQFSARPSD 70
Query: 48 NMKREDLVINKALRNDS---SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
M +++ D ++V F +++ GV ++ + S N I+V
Sbjct: 71 AMLKKNTPPATESNPDPVPDCGPVWVEFLTDKQFGVGQIRQFAKYTISNNYKTGIMVTHV 130
Query: 105 NLTPFARTCIQEISAKFHLEVF 126
L+P AR + + +E F
Sbjct: 131 PLSPAARKSLASVENLAKIECF 152
>gi|15228284|ref|NP_188290.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332642330|gb|AEE75851.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 87
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 83 MKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK---FHLEVFQ 127
MK Y +++KS NVFRAILVV Q++ F+R + + A FH+EVFQ
Sbjct: 1 MKKYIDQLKSANVFRAILVV-QDIKAFSRQALVFLGAVYPIFHIEVFQ 47
>gi|330933135|ref|XP_003304060.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
gi|311319571|gb|EFQ87830.1| hypothetical protein PTT_16482 [Pyrenophora teres f. teres 0-1]
Length = 235
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 21/122 (17%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDL--------------- 54
RL+R+ +T +M+ DRGY V + ++NMS +QF K+ D
Sbjct: 13 RLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFSRKYAREDGEPDRSRLNFSCQPSEEMLA 72
Query: 55 ----VINKALRNDSSD--QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTP 108
K + N + + I+V F ++ VG+K ++ Y + + + I++ + +T
Sbjct: 73 KYTDAPTKKVPNPTPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVKPMTG 132
Query: 109 FA 110
A
Sbjct: 133 MA 134
>gi|300701817|ref|XP_002995033.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
gi|239603668|gb|EEQ81362.1| hypothetical protein NCER_102232 [Nosema ceranae BRL01]
Length = 204
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+ ++ F R T+++M +RGY D ++ +S + FIA+F + ++ IN +N +
Sbjct: 3 EKKRKFFLCRNTLVEMCTERGY-TTDQKV-LSYDNFIAQF-PSCDKDVNSINFVCKN-AD 58
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+ + + F D++K+G +++ KS N++ ILV+ Q ++ ++ + + +E+
Sbjct: 59 NLVGIHFIDDEKIGKSSIEKVIETYKSINIYHLILVINQKMSSASQNIVN--VSDLKIEI 116
Query: 126 FQ 127
F+
Sbjct: 117 FK 118
>gi|380474201|emb|CCF45905.1| RNA polymerase Rpb5, partial [Colletotrichum higginsianum]
Length = 219
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 21/128 (16%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGY------------------FVGDFEINMSKEQFIAKFG 46
++E+ RL+R RT +M DRGY D +N K QF A
Sbjct: 8 NKEVTRLWRAWRTAHEMAADRGYELAEDELKISLDRFKMEYTAADGSVNRGKLQFSANPS 67
Query: 47 ENMKREDLVINKALR-NDSSD--QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
+M R+ + N + D ++V F + G+K +K + + + S I+V
Sbjct: 68 ADMIRKYTPPPTSQNPNPTPDCGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSGIMVTH 127
Query: 104 QNLTPFAR 111
L+P AR
Sbjct: 128 VPLSPAAR 135
>gi|189192274|ref|XP_001932476.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187974082|gb|EDU41581.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 235
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 29/126 (23%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN------- 62
RL+R+ +T +M+ DRGY V + ++NMS +QF K+ RED +++ N
Sbjct: 13 RLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFARKYA----REDGEPDRSRLNFSCQPSE 68
Query: 63 -------DSSDQ-----------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
D+ + I+V F ++ VG+K ++ Y + + + I++ +
Sbjct: 69 EMLAKYTDAPTKKVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVK 128
Query: 105 NLTPFA 110
+T A
Sbjct: 129 PMTGMA 134
>gi|145481253|ref|XP_001426649.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393725|emb|CAK59251.1| unnamed protein product [Paramecium tetraurelia]
Length = 224
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 13/140 (9%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKAL---RNDS 64
IK+ +++ +T+ M+R RGYF + I + E F + E R D++ + + + D
Sbjct: 14 IKKKYKVFQTLASMIRQRGYFEANPPILIEDEPF--ELFEAKYRTDVLPQRVVCFKKEDE 71
Query: 65 SDQIYV-FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA-RTCIQEISAKFH 122
+D++ + F+ + + K Y + + + V R I+V + PFA + + E A+F
Sbjct: 72 TDKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTD--PFATKPQVVEKKARFF 129
Query: 123 LEVFQVNVFSLMIYTCKLFN 142
++ QVN S+ Y+ +LF
Sbjct: 130 ID--QVN--SIQTYSFELFG 145
>gi|392512756|emb|CAD25628.2| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
Length = 202
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN---- 62
E++ L R T ++M+RDRGY + ++ +A G + + + ++ N
Sbjct: 4 ELRALCLSRNTAIEMVRDRGY--------TTTQEVLALDGFHERYPLALTKRSTLNFVCV 55
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ + V F D++K+G K + ++ + +N+F IL++ Q +P + I ++ +F
Sbjct: 56 NVDRPVAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIP-LTPRFS 114
Query: 123 LEVFQV 128
+E+F V
Sbjct: 115 IEIFLV 120
>gi|19074518|ref|NP_586024.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329590|gb|AGE95861.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 212
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN---- 62
E++ L R T ++M+RDRGY + ++ +A G + + + ++ N
Sbjct: 14 ELRALCLSRNTAIEMVRDRGY--------TTTQEVLALDGFHERYPLALTKRSTLNFVCV 65
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
+ + V F D++K+G K + ++ + +N+F IL++ Q +P + I ++ +F
Sbjct: 66 NVDRPVAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQLPSPTVMSMIP-LTPRFS 124
Query: 123 LEVFQV 128
+E+F V
Sbjct: 125 IEIFLV 130
>gi|359481904|ref|XP_003632689.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II,
and III subunit RPABC1-like [Vitis vinifera]
Length = 207
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 15/127 (11%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD 66
E R + RRT+++MLRDRGY + +I++ QF + F + D +
Sbjct: 51 ESHRYYLARRTLLEMLRDRGYSIPALDIDI-YLQFXSVFHLFVSSSDYSLFXL------- 102
Query: 67 QIYVFF--PDEQKV-GVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHL 123
I V F PD KV ++++ T + +++ + ILV+Q ++T A + S F +
Sbjct: 103 HILVIFCGPDVVKVNAIRSIA--TQIVNKDSLSKLILVLQNHITSQALKAVDLFS--FQV 158
Query: 124 EVFQVNV 130
E+FQV++
Sbjct: 159 EMFQVSL 165
>gi|90954539|emb|CAJ44464.1| RNA polymerase subunit 2RPB5 [Trypanosoma brucei brucei]
gi|261333514|emb|CBH16509.1| DNA-directed RNA polymerases II subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 219
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSK----EQFIAKFGENMKREDLVIN-KALRNDS 64
R+FR+ RTV +M+RDR Y V I + EQ++ + G+ + RE + + + +
Sbjct: 17 RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQYVDREGKRIYRERMTVPCERVGGTH 76
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
+ VFF E +G++ MK Y N R I+V
Sbjct: 77 RSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTH 113
>gi|402084014|gb|EJT79032.1| DNA-directed RNA polymerase I [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 233
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED 53
E +RL+R RT +ML+DRGY + E+N+S ++F+ ++ + D
Sbjct: 10 EARRLWRAWRTAHEMLQDRGYELSQEEVNISLDRFLQQYTDGAGNVD 56
>gi|68489026|ref|XP_711626.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
gi|68489167|ref|XP_711558.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432871|gb|EAK92334.1| hypothetical protein CaO19.6340 [Candida albicans SC5314]
gi|46432944|gb|EAK92404.1| hypothetical protein CaO19.13696 [Candida albicans SC5314]
Length = 179
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLE 124
+ ++V F DE VG+KTM+ + + +N I + Q ++TP A I +S +E
Sbjct: 39 TGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTPSANKLIPTVSPAT-IE 97
Query: 125 VFQVN 129
+FQ N
Sbjct: 98 IFQEN 102
>gi|310792261|gb|EFQ27788.1| RNA polymerase Rpb5 domain-containing protein [Glomerella
graminicola M1.001]
Length = 230
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 21/143 (14%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVG------------------DFEINMSKEQFIAKFG 46
++E+ RL+R RT +M DRGY + D +N +K QF A
Sbjct: 8 NKEVTRLWRAWRTAHEMAADRGYELAEDELTISLDRFKMEYTSADGSVNRNKLQFSANPS 67
Query: 47 ENMKREDLVINKALRNDSSDQ---IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
M R+ + + + ++V F + G+K +K + + + S I++
Sbjct: 68 AEMIRKFTPPATPQNPNPAPECGTLWVEFLADTTFGIKEIKKFIHHLISNKYSSGIMITH 127
Query: 104 QNLTPFARTCIQEISAKFHLEVF 126
L+P AR + I + +E F
Sbjct: 128 VALSPAARKMLITIESFAKVECF 150
>gi|451853318|gb|EMD66612.1| hypothetical protein COCSADRAFT_35119 [Cochliobolus sativus ND90Pr]
Length = 234
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 29/126 (23%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN------- 62
RL+R+ RT +M+ DRGY V + ++ MS E+F ++ RED +++ N
Sbjct: 12 RLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYA----REDGEPDRSRLNFSCQPSE 67
Query: 63 ------------------DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
S I+V F ++ VG+K ++ Y + + + I+V +
Sbjct: 68 EMLAKYTDAPTKKNPNPTPSIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVK 127
Query: 105 NLTPFA 110
+T A
Sbjct: 128 AMTGMA 133
>gi|145481865|ref|XP_001426955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394033|emb|CAK59557.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 20/142 (14%)
Query: 9 KRLFRIRRTVMQMLRDRGYF---VGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
K+ ++I +T+ M+R RGYF + + E F +K+ +N+ E +V K R+D S
Sbjct: 15 KKKYKIFQTLASMIRQRGYFESTPAKLVEDETFEIFESKYRDNLP-EKIVCFK--RDDES 71
Query: 66 DQIYVFF-----PDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAK 120
D++ + F P + KT++ ++NR V R I++ + PFA T Q + K
Sbjct: 72 DKLLIIFYTKQAPLTHEEAKKTIQDFSNR----QVKRLIMIFPTD--PFA-TKPQVVDKK 124
Query: 121 FHLEVFQVNVFSLMIYTCKLFN 142
L + QVN S+ Y+ +LF
Sbjct: 125 ARLFIDQVN--SIQTYSFELFG 144
>gi|396081727|gb|AFN83342.1| DNA-directed RNA polymerase I [Encephalitozoon romaleae SJ-2008]
Length = 210
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-KREDLVINKALRNDSS 65
E++ L R T ++M++DRGY E+ S E F ++ + KR L + D
Sbjct: 14 ELRALCLSRNTTIEMIKDRGYTTTQ-EVQ-SLESFHERYPFALTKRSTL---NFVCVDVD 68
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
+ + F D++K+G K + ++ + +N+F IL++ Q +P + I ++ KF++E+
Sbjct: 69 RPVGIHFGDDEKMGKKGFEGLLSQYEKDNIFHLILILPQFPSPTVMSMIS-LNPKFNVEI 127
Query: 126 FQV 128
F V
Sbjct: 128 FLV 130
>gi|71748956|ref|XP_827817.1| DNA-directed RNA polymerases II subunit [Trypanosoma brucei
TREU927]
gi|70833201|gb|EAN78705.1| DNA-directed RNA polymerases II subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 219
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSK----EQFIAKFGENMKREDLVIN-KALRNDS 64
R+FR+ RTV +M+RDR Y V I + EQ++ + G + RE + + + +
Sbjct: 17 RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQYVDREGRRIYRERMTVPCERVGGTH 76
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ 103
+ VFF E +G++ MK Y N R I+V
Sbjct: 77 RSRAMVFFASE--LGMEGMKGYCQTAMDANCERVIIVTH 113
>gi|452004738|gb|EMD97194.1| hypothetical protein COCHEDRAFT_1163800 [Cochliobolus
heterostrophus C5]
Length = 234
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 29/126 (23%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN------- 62
RL+R+ RT +M+ DRGY V + ++ MS E+F ++ RED +++ N
Sbjct: 12 RLWRVWRTTKEMMNDRGYMVVEDDMTMSLEEFSRRYA----REDGEPDRSRLNFSCQPSE 67
Query: 63 -------DSSDQ-----------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ 104
D+ + I+V F ++ VG+K ++ Y + + + I+V +
Sbjct: 68 EMIAKYTDAPTKKNPNPTPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMVTVK 127
Query: 105 NLTPFA 110
+T A
Sbjct: 128 AMTGMA 133
>gi|83315225|ref|XP_730701.1| RNA polymerase Rpb5 [Plasmodium yoelii yoelii 17XNL]
gi|23490506|gb|EAA22266.1| RNA polymerase Rpb5, C-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 112
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 83 MKTY--TNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
MK Y T +M +++ RAILV Q LTPFA+ I+E + + +E F
Sbjct: 1 MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENF 46
>gi|302423138|ref|XP_003009399.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261352545|gb|EEY14973.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|346970556|gb|EGY14008.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 231
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 22/143 (15%)
Query: 6 EEIKRLFRIRRTVMQMLRDRG------------------YFVGDFEINMSKEQFIAKFGE 47
+E+ R +R RTV +M DRG Y D +N SK F A+
Sbjct: 9 KEVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFSARPSS 68
Query: 48 NM-KREDLVINKALRNDSSD--QIYVFFPDEQ-KVGVKTMKTYTNRMKSENVFRAILVVQ 103
+M R + A N D IY+ F EQ +GV+ ++ + + + I+V
Sbjct: 69 DMLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKAGIMVTS 128
Query: 104 QNLTPFARTCIQEISAKFHLEVF 126
LT R + + + +E F
Sbjct: 129 SPLTSAGRKQLLSLESFARIECF 151
>gi|70938710|ref|XP_739995.1| DNA-directed RNA polymerase 2 [Plasmodium chabaudi chabaudi]
gi|56517394|emb|CAH79759.1| DNA-directed RNA polymerase 2, putative [Plasmodium chabaudi
chabaudi]
Length = 126
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 83 MKTY--TNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
MK Y T +M +++ RAILV Q LTPFA+ I+E + + +E F
Sbjct: 1 MKNYRLTEKMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENF 46
>gi|119589956|gb|EAW69550.1| polymerase (RNA) II (DNA directed) polypeptide E, 25kDa, isoform
CRA_c [Homo sapiens]
gi|194381594|dbj|BAG58751.1| unnamed protein product [Homo sapiens]
Length = 117
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 90 MKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVF 126
M+ EN+ RA++VVQQ +TP A+ + +++ K+ LE F
Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQF 37
>gi|407846764|gb|EKG02755.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN----MKREDLVIN-KALRNDS 64
++FR+ RTV +M+ DR Y V D I S E+F + + + R+ + + + +
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTDPREGVIHRDRMTVPCERIGVSQ 76
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
+ VFF + + ++TMK Y + N R I+VVQ + + +++I+
Sbjct: 77 RSRAMVFF--SEGLSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDIN 128
>gi|389749829|gb|EIM91000.1| DNA-directed RNA polymerase RPB5 subunit [Stereum hirsutum
FP-91666 SS1]
Length = 175
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKRED 53
D E L+++ RT+ ++++DRGY V D EI+M F + + + D
Sbjct: 6 DSEAATLWKVNRTIQELVKDRGYQVADDEIHMDLSTFESHYANSAGSVD 54
>gi|105923218|gb|ABF81464.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]
Length = 1617
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGV 80
M +DRGY V D E+ S +F + FG + L + +LR++ ++ V F ++
Sbjct: 1 MHKDRGYDVADTELTRSLMEFRSIFGNCPDLDSLRFSISLRSNPYNKNLVIFMGTDEIRT 60
Query: 81 KTMK-TYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQVNVFSL 133
++ Y + E+ IL++Q + FA+ ++ F ++VFQ +FS+
Sbjct: 61 ANIRAVYGQILSKESRQGLILILQSKMNHFAKKEPEKFP--FKVKVFQ-KMFSV 111
>gi|70936236|ref|XP_739092.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56515823|emb|CAH87208.1| hypothetical protein PC302370.00.0 [Plasmodium chabaudi chabaudi]
Length = 69
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 5 DEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK-REDLVINKALRND 63
++ + R ++ R+T +ML DRGY + E + F F EN K R + I + +ND
Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61
Query: 64 SSDQIYVF 71
+S++I V+
Sbjct: 62 ASNKIIVY 69
>gi|146418140|ref|XP_001485036.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
gi|146390509|gb|EDK38667.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 179
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
++V F DE VG+KTM+ + + +N I + Q ++TP A + + A +E FQ
Sbjct: 42 LWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITPSANKLVPTV-APASIETFQ 100
>gi|71660313|ref|XP_821874.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|71664576|ref|XP_819267.1| DNA-directed RNA polymerases II [Trypanosoma cruzi strain CL
Brener]
gi|19718719|gb|AAL96367.1|AC116314_4 Tcc44h21-2.4 [Trypanosoma cruzi]
gi|70884561|gb|EAN97416.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
gi|70887263|gb|EAO00023.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi]
Length = 219
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVIN-------KALRN 62
++FR+ RTV +M+ DR Y V D I S E+F + + RE ++ + +
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD--PREGVIYRDRMTVPCERIGV 74
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
+ VFF + + ++TMK Y + N R I+VVQ + + +++I+
Sbjct: 75 SQRSRAMVFF--SEGLSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDIN 128
>gi|303389965|ref|XP_003073214.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
gi|303302359|gb|ADM11854.1| DNA-directed RNA polymerase I [Encephalitozoon intestinalis ATCC
50506]
Length = 214
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 7 EIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN---- 62
E++ L R T ++M++DRGY + Q + +F E K + ++ N
Sbjct: 18 ELRALCLSRNTTIEMIKDRGY------TTTQEVQTLDEFHE--KYPFALTKRSTLNFVCV 69
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFH 122
D++ + + F +++K+G K + + + +N+F IL++ +P + I ++ KF
Sbjct: 70 DTNRPVAIHFGEDEKMGKKVFEGLLTQYEKDNIFHLILILPLAPSPTVMSMIS-LNPKFC 128
Query: 123 LEVFQV 128
+E+F V
Sbjct: 129 IEIFLV 134
>gi|167623817|ref|YP_001674111.1| radical SAM domain-containing protein [Shewanella halifaxensis
HAW-EB4]
gi|167353839|gb|ABZ76452.1| Radical SAM domain protein [Shewanella halifaxensis HAW-EB4]
Length = 414
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 93 ENVFRAILVVQQNLTPFAR-TCIQEISAKFHLEVFQ 127
E V+R++L++Q++ PFA TCI SA++ LE++Q
Sbjct: 152 EQVYRSVLLLQKHQVPFATLTCINNHSAQYALEIYQ 187
>gi|342184881|emb|CCC94363.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma
congolense IL3000]
Length = 219
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALR-----NDS 64
R+FR+ RTV +M+RDR Y I + EQF ++ + RE L
Sbjct: 17 RMFRVLRTVGEMMRDRKYHFPTSLIPETVEQFCEQYVDRDTREIFRSRMTLPCERVGGSQ 76
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNL 106
+ VFF E +G++ MKTY R I+VV +
Sbjct: 77 RGRAMVFFSVE--LGMEAMKTYYQSAMDAGCDRVIIVVHSKV 116
>gi|340057896|emb|CCC52248.1| putative DNA-directed RNA polymerases II subunit [Trypanosoma vivax
Y486]
Length = 308
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK----REDLVIN-KALRNDS 64
R+FR+ RTV +M+RDR Y + I S EQF + + RE + + + +
Sbjct: 106 RMFRVMRTVGEMMRDRKYNIACNVIPESVEQFREWYTDQHSNAILRERMTVPCERVCGPQ 165
Query: 65 SDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILV 101
+ VFF Q +G++ +K Y S+N R I+V
Sbjct: 166 RSRAMVFF--SQGLGMEAVKQYIMTANSDNCDRLIIV 200
>gi|7208597|gb|AAF40216.1|AF236666_1 RNA polymerase subunit [Emericella nidulans]
Length = 117
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMS----KEQFIAKFGENMKREDLVINKA 59
++ E R++R RTV +ML+DRGY V + E+ + K ++ K G R V N+
Sbjct: 22 AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKREYAVKKGYPSARS--VKNQG 79
Query: 60 LRNDSSDQIYVFFPDEQKVGV 80
++ Y FP+ K G+
Sbjct: 80 RATEAMRGEYTPFPNPLKPGI 100
>gi|407407449|gb|EKF31248.1| DNA-directed RNA polymerases II, putative [Trypanosoma cruzi
marinkellei]
Length = 219
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 10 RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVIN-------KALRN 62
++FR+ RTV +M+ DR Y V D I S E+F + + RE ++ + +
Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD--PREGVIYRDRMTVPCERIGV 74
Query: 63 DSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
+ VFF + + ++TMK Y + N R I+V Q + + +++I+
Sbjct: 75 SQRSRAMVFF--SEGLSMETMKRYHTQASEANCDRVIIVAQGKINAIVKRHVEDIN 128
>gi|149239546|ref|XP_001525649.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146451142|gb|EDK45398.1| DNA-directed RNA polymerases II 24 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 179
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 68 IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127
++V F DE VG+KTM+ + + +N I + Q ++TP A I + +E FQ
Sbjct: 42 LWVEFCDEPSVGIKTMRNFCIHISEKNFQVGIFIYQNSITPSANKLIPTVQPA-SIETFQ 100
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.328 0.139 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,819,183,827
Number of Sequences: 23463169
Number of extensions: 62469885
Number of successful extensions: 203592
Number of sequences better than 100.0: 448
Number of HSP's better than 100.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 202877
Number of HSP's gapped (non-prelim): 465
length of query: 143
length of database: 8,064,228,071
effective HSP length: 107
effective length of query: 36
effective length of database: 9,848,636,284
effective search space: 354550906224
effective search space used: 354550906224
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 71 (32.0 bits)