BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032325
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0BNE2|RPAB1_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Rattus norvegicus GN=Polr2e PE=2 SV=1
Length = 210
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYVLEQF 130
>sp|Q80UW8|RPAB1_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus
musculus GN=Polr2e PE=2 SV=1
Length = 210
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYVLEQF 130
>sp|Q5R587|RPAB1_PONAB DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo
abelii GN=POLR2E PE=2 SV=1
Length = 210
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 88/128 (68%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+FG+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>sp|P19388|RPAB1_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Homo
sapiens GN=POLR2E PE=1 SV=4
Length = 210
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 87/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V E++ + E+F A+ G+ +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>sp|Q2T9T3|RPAB1_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Bos
taurus GN=POLR2E PE=2 SV=1
Length = 210
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 86/128 (67%), Gaps = 5/128 (3%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM-----KREDLVINK 58
+EE RL++IR+T+MQ+ DRGY V ++ + E+F A+FG +R DL +
Sbjct: 3 DEEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLV 62
Query: 59 ALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
A +D +DQ++VFFP+E KVG+KT+K Y RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 63 AHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMA 122
Query: 119 AKFHLEVF 126
K+ LE F
Sbjct: 123 PKYILEQF 130
>sp|Q9N5K2|RPAB1_CAEEL DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis elegans GN=rpb-5 PE=3 SV=1
Length = 211
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 87/131 (66%), Gaps = 7/131 (5%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F ++G+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYMLEHF 131
>sp|A8XGH1|RPAB1_CAEBR DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1
Length = 211
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 86/131 (65%), Gaps = 7/131 (5%)
Query: 3 LSDEEIK--RLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE-----NMKREDLV 55
++D+E++ RL+RIR+TV+QM+ DRGY V E++ E F FG+ R DL
Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60
Query: 56 INKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115
I A +D +DQ++VFFP++ K+G+KT+K +M+ +N+ RAI+VVQ +TP A+ I
Sbjct: 61 ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120
Query: 116 EISAKFHLEVF 126
+++ K+ LE F
Sbjct: 121 DMAPKYMLEHF 131
>sp|Q54EH2|RPAB1_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc1
OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2
Length = 197
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 79/130 (60%), Gaps = 7/130 (5%)
Query: 6 EEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSS 65
E+I RL +IR+TV+QML DR Y + +E +E F++ RE+L + ++D +
Sbjct: 2 EDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVS-------RENLTMYCVKKDDPT 54
Query: 66 DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEV 125
D IYVFFPD KVGV +K Y + MK RAI+VVQQN+TPFA+ + E S + + +
Sbjct: 55 DSIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITL 114
Query: 126 FQVNVFSLMI 135
Q N L++
Sbjct: 115 EQFNEAELLV 124
>sp|Q09191|RPAB1_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb5 PE=1 SV=1
Length = 210
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIA---KFGENMKREDLVIN 57
M+ ++ I R+FR +T Q++ DRGY V E++++ +QF A G N+ R L
Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60
Query: 58 KALRNDSS-DQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQE 116
NDS+ IY+ F E VG+K M+T+ + + N IL+ ++TP A I
Sbjct: 61 AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIAT 120
Query: 117 ISAKFHLEVFQ 127
++ +F +E FQ
Sbjct: 121 VTGQFTIETFQ 131
>sp|Q6FQA6|RPAB1_CANGA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RPB5 PE=3 SV=1
Length = 215
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 4 SDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRND 63
+D I RL+R RTV +M+RDRGYF+ E++++ E F K+ ++M R + N
Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64
Query: 64 SSDQ---------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCI 114
+ + ++V F DE VGVKTMKT+ ++ + I + Q N+TP A +
Sbjct: 65 TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124
Query: 115 QEISAK----FHLEVFQVNV 130
I FH VN+
Sbjct: 125 PSIPPATIETFHEAALVVNI 144
>sp|P20434|RPAB1_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPB5 PE=1 SV=1
Length = 215
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M++DRGYF+ E+ + E F AK+ ++M R + N + +
Sbjct: 9 ISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
I +V F DE VGVKTMKT+ ++ +N I V Q N+TP A + I
Sbjct: 69 ISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIP 128
Query: 119 A 119
Sbjct: 129 P 129
>sp|Q757H7|RPAB1_ASHGO DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=RPB5 PE=3 SV=1
Length = 215
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD- 66
+ RL+R RTV +M+RDRGYF+ E+++S E F AK+ ++M R + N + +
Sbjct: 9 VSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEET 68
Query: 67 --------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118
++V F DE VG+KTMK + + +N I + Q +TP A + ++
Sbjct: 69 LKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLLPSVA 128
Query: 119 A 119
Sbjct: 129 P 129
>sp|Q6CJ62|RPAB1_KLULA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPB5 PE=3
SV=1
Length = 215
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R +TV +M+RDRGYF+ EI++S E F AK+ ++M + + N + +
Sbjct: 9 ISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA 110
I +V F DE VGVKTMK + + +N I + Q +TP A
Sbjct: 69 IEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSA 120
>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
Length = 215
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 8 IKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQ 67
I RL+R RTV +M+RDRGYF+ EI++S E F K+ ++M + + N + +
Sbjct: 9 ISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEES 68
Query: 68 I---------YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFA 110
I +V F DE VGVKTMK + + +N I + Q +TP A
Sbjct: 69 IEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITPSA 120
>sp|Q6BIJ0|RPAB1_DEBHA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RPB5 PE=3 SV=1
Length = 214
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM---KREDLVIN 57
M +D I RL+R +TV +M+RDRGY++ EI+MS +F ++ ++M +R+ +
Sbjct: 1 MEDTDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQ 60
Query: 58 KALRNDSSDQ------IYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFAR 111
+S ++ ++V F DE VG+KTM+ + + +N I + Q ++TP A
Sbjct: 61 ANPTAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITPSAN 120
Query: 112 TCIQEISAKFHLEVFQ 127
I +S +E FQ
Sbjct: 121 KLIPTVSPA-SIETFQ 135
>sp|Q6CA26|RPAB1_YARLI DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RPB5
PE=3 SV=1
Length = 212
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 18/138 (13%)
Query: 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKA--- 59
+S ++ ++L+++ RT ++++DRGY + D E+N+S +QF+++ + M + I K
Sbjct: 1 MSSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKP---IKKKMCF 57
Query: 60 LRNDSSD---------QIYVFFPDEQKVGVKTMKTYTNRMKSENVFR-AILVVQQNLTPF 109
+ + S + I+V F +E V VKTM+ + + SEN F ILV + N+TP
Sbjct: 58 MASPSPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHI-SENKFATGILVYENNMTPS 116
Query: 110 ARTCIQEISAKFHLEVFQ 127
A I + A ++ FQ
Sbjct: 117 ANRLIPSV-APATIDTFQ 133
>sp|Q1AS60|SYE2_RUBXD Glutamate--tRNA ligase 2 OS=Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129) GN=gltX2 PE=3 SV=1
Length = 496
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 16/61 (26%)
Query: 5 DEEIKRLFRIRRTVMQMLRDR-----------GYFVGDFEINMSKEQFIAKFGENMKRED 53
+ ++ RL RI M++LR+R GYF G+ ++ +EQF +FG+ RE+
Sbjct: 358 ERDMPRLVRI----MELLRERLQRTTDIPEAAGYFYGE-RLDYDREQFEKQFGKEFVREN 412
Query: 54 L 54
L
Sbjct: 413 L 413
>sp|A7Z5Z6|CCA_BACA2 CCA-adding enzyme OS=Bacillus amyloliquefaciens (strain FZB42)
GN=cca PE=3 SV=1
Length = 396
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 19/111 (17%)
Query: 2 TLSDEEIKRLFR-------IRRTVMQMLRDRGYFVGDFEINMSKE--------QFIAKFG 46
+ S E++RLF+ TV+ + D Y V F + +FI
Sbjct: 46 SASPNEVERLFKRTVDVGKEHGTVIVLWEDETYEVTTFRAESEYKDYRRPEAVRFITSLS 105
Query: 47 ENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97
E++KR DL IN A+ + ++ +F +G K ++T N E+ FR
Sbjct: 106 EDLKRRDLTIN-AMAMSAEGELLDYFGGAHDIGQKLIRTVGN---PEDRFR 152
>sp|P42592|YGJK_ECOLI Uncharacterized protein YgjK OS=Escherichia coli (strain K12)
GN=ygjK PE=1 SV=1
Length = 783
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 38 KEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97
+ + KF EN ++ ++ +L +S DQ + D + M T + + +R
Sbjct: 547 RSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLA--EMATILGKPEEAKRYR 604
Query: 98 AILVVQQNLTPFARTCIQEISAKFHLEV 125
+ Q L + TC+ + + +F+ +V
Sbjct: 605 QL---AQQLADYINTCMFDPTTQFYYDV 629
>sp|Q556M4|C5082_DICDI Probable cytochrome P450 508A2 OS=Dictyostelium discoideum
GN=cyp508A2-1 PE=3 SV=1
Length = 493
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 42 IAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKT 85
+A G+N K ++ KA+R + IY D+ V +++M+T
Sbjct: 112 VASMGDNWKNNKEIVGKAMRKTNLKHIYQLLDDQVDVLIESMRT 155
>sp|Q972G5|TRIC_SULTO Putative Tricorn-like protease C-terminal subunit OS=Sulfolobus
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 /
7) GN=triC PE=3 SV=1
Length = 854
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 21 MLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSD----------QIYV 70
+++DR YF+ D E +S + G+++ + RN SSD IY+
Sbjct: 37 IIKDRVYFLSDHE-GISNLYSVNLEGKDLTKHTNFTEYYCRNASSDGRRIVFQNSGDIYL 95
Query: 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAIL 100
+ P++Q++ + + T+R K + F +L
Sbjct: 96 YDPEKQELKLLDIDLPTDRKKKQGKFVEVL 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.139 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,259,996
Number of Sequences: 539616
Number of extensions: 1547505
Number of successful extensions: 5673
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5639
Number of HSP's gapped (non-prelim): 33
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)