Query 032325
Match_columns 143
No_of_seqs 104 out of 219
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_E DNA-directed RNA polyme 100.0 2E-56 6.8E-61 353.8 3.9 142 1-142 1-146 (210)
2 1dzf_A DNA-directed RNA polyme 100.0 1.2E-54 4.1E-59 344.5 6.6 139 3-142 4-151 (215)
3 2yxb_A Coenzyme B12-dependent 76.1 3.2 0.00011 30.2 4.3 83 18-117 38-120 (161)
4 2jmk_A Hypothetical protein TA 76.0 8.4 0.00029 26.6 6.0 58 38-97 46-107 (111)
5 3ezx_A MMCP 1, monomethylamine 66.3 13 0.00044 28.2 5.8 79 18-111 112-192 (215)
6 4f0q_A Restriction endonucleas 56.1 7.7 0.00026 33.5 3.2 51 73-127 360-410 (456)
7 1y80_A Predicted cobalamin bin 54.2 28 0.00097 25.6 5.8 76 17-109 107-184 (210)
8 2vld_A NUCS, UPF0286 protein p 49.1 27 0.00093 27.7 5.1 51 67-118 170-224 (251)
9 1ydl_A TFIIH, general transcri 47.3 14 0.00049 24.4 2.8 41 92-135 9-55 (79)
10 2i2x_B MTAC, methyltransferase 40.4 25 0.00085 27.2 3.7 75 18-109 143-217 (258)
11 1ccw_A Protein (glutamate muta 37.9 11 0.00037 26.4 1.1 71 18-105 23-93 (137)
12 3dtg_A Branched-chain amino ac 33.9 12 0.00042 30.8 0.9 29 14-44 276-304 (372)
13 2wkj_A N-acetylneuraminate lya 32.5 78 0.0027 25.0 5.5 45 71-116 22-71 (303)
14 3gi1_A LBP, laminin-binding pr 32.1 1.8E+02 0.0061 22.6 8.8 82 11-115 166-247 (286)
15 1xky_A Dihydrodipicolinate syn 31.9 80 0.0027 24.9 5.5 45 71-116 23-72 (301)
16 3cpr_A Dihydrodipicolinate syn 29.3 1.1E+02 0.0036 24.2 5.8 45 71-116 27-76 (304)
17 2o1e_A YCDH; alpha-beta protei 29.0 2.1E+02 0.0072 22.5 9.3 85 9-116 175-259 (312)
18 2nuw_A 2-keto-3-deoxygluconate 26.8 63 0.0022 25.3 4.0 46 71-117 10-60 (288)
19 2ojp_A DHDPS, dihydrodipicolin 26.5 1E+02 0.0035 24.1 5.1 45 71-116 12-61 (292)
20 3b4u_A Dihydrodipicolinate syn 26.3 70 0.0024 25.1 4.2 45 71-116 14-63 (294)
21 1w3i_A EDA, 2-keto-3-deoxy glu 26.3 69 0.0024 25.1 4.1 46 71-117 10-60 (293)
22 2zsh_B Della protein GAI; plan 25.6 38 0.0013 23.6 2.2 31 18-48 24-57 (110)
23 3l21_A DHDPS, dihydrodipicolin 25.4 74 0.0025 25.2 4.2 44 72-116 27-75 (304)
24 3flu_A DHDPS, dihydrodipicolin 25.3 74 0.0025 25.0 4.1 45 71-116 18-67 (297)
25 1xrs_B D-lysine 5,6-aminomutas 24.9 1.4E+02 0.0049 23.4 5.7 72 22-108 152-227 (262)
26 1ass_A Thermosome; chaperonin, 24.6 1.3E+02 0.0045 21.5 5.1 34 82-117 60-93 (159)
27 3s5o_A 4-hydroxy-2-oxoglutarat 23.9 72 0.0025 25.2 3.8 48 69-117 23-75 (307)
28 1f6k_A N-acetylneuraminate lya 23.9 78 0.0027 24.7 4.0 45 71-116 14-64 (293)
29 3tak_A DHDPS, dihydrodipicolin 23.6 74 0.0025 24.9 3.8 45 71-116 12-61 (291)
30 3dz1_A Dihydrodipicolinate syn 23.1 80 0.0027 25.0 4.0 44 72-116 20-68 (313)
31 2rb4_A ATP-dependent RNA helic 22.9 1.9E+02 0.0065 19.9 6.5 45 64-115 33-77 (175)
32 3fkr_A L-2-keto-3-deoxyarabona 22.9 65 0.0022 25.5 3.4 47 69-116 17-68 (309)
33 3vus_A Poly-beta-1,6-N-acetyl- 22.8 2E+02 0.0068 22.0 6.2 68 16-104 34-101 (268)
34 3jsz_A LGT1, putative uncharac 22.5 92 0.0031 26.7 4.3 65 63-127 131-198 (525)
35 2hl7_A Cytochrome C-type bioge 22.2 68 0.0023 21.1 2.8 30 14-49 48-77 (84)
36 1gml_A T-complex protein 1 sub 22.1 1.5E+02 0.0051 21.5 5.0 36 81-118 65-100 (178)
37 2r8w_A AGR_C_1641P; APC7498, d 21.7 83 0.0028 25.3 3.8 45 71-116 45-94 (332)
38 1pq4_A Periplasmic binding pro 21.6 2.8E+02 0.0097 21.4 9.0 74 16-114 182-255 (291)
39 4h0n_A DNMT2; SAH binding, tra 21.6 45 0.0015 26.8 2.2 44 13-62 127-170 (333)
40 3qze_A DHDPS, dihydrodipicolin 21.6 79 0.0027 25.2 3.6 44 72-116 35-83 (314)
41 2l9w_A U4/U6 snRNA-associated- 21.0 1E+02 0.0035 21.7 3.7 33 58-90 13-45 (117)
42 3si9_A DHDPS, dihydrodipicolin 21.0 81 0.0028 25.1 3.6 44 72-116 34-82 (315)
43 2kw0_A CCMH protein; oxidoredu 20.8 74 0.0025 21.3 2.8 31 14-50 45-75 (90)
44 3jzd_A Iron-containing alcohol 20.7 67 0.0023 26.0 3.1 51 77-128 18-68 (358)
45 2ex2_A Penicillin-binding prot 20.6 1.1E+02 0.0039 25.7 4.6 32 67-98 81-112 (458)
46 3a5f_A Dihydrodipicolinate syn 20.4 1.6E+02 0.0054 22.9 5.1 44 71-116 13-61 (291)
47 3pm9_A Putative oxidoreductase 20.2 57 0.002 27.6 2.6 25 3-27 326-350 (476)
48 2v9d_A YAGE; dihydrodipicolini 20.0 85 0.0029 25.3 3.6 47 69-116 40-91 (343)
49 3mva_O Transcription terminati 20.0 72 0.0024 25.4 3.1 33 13-46 305-340 (343)
No 1
>3h0g_E DNA-directed RNA polymerases I, II, and III subunit rpabc1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-56 Score=353.83 Aligned_cols=142 Identities=30% Similarity=0.488 Sum_probs=136.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCCcccchhhhccCHHHHHHHhcCC---CCCcceEEEeecCCCC-CCcEEEEcCCCC
Q 032325 1 MTLSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGEN---MKREDLVINKALRNDS-SDQIYVFFPDEQ 76 (143)
Q Consensus 1 m~~~~~e~~rL~rirrTv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~---~~r~~L~~~~~~~~dp-~~~i~VfF~~~~ 76 (143)
|+++++|++||||+|||++|||+||||.|+++|+++|+++|+++||++ ++|++|+|++.+.+|| +++||||||+++
T Consensus 1 m~~~~~e~~rl~rirrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~~~~~r~~l~~~~~~~~dp~~~~i~VfF~~~~ 80 (210)
T 3h0g_E 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNKGTIYIEFAKEP 80 (210)
T ss_dssp ---CTHHHHHHHGGGSSSSSTTTTTTEECCTTTTSCCHHHHHHHSCCSSSSCCCSSCCCEEEESSCSSCCCEEEECCCSS
T ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCCccCHHHHhCCHHHHHHHhcccCCCCCchheEEEEEcCCCCccCeEEEEECCCC
Confidence 788899999999999999999999999999999999999999999986 6699999999999999 999999999999
Q ss_pred ccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhccccceEeeeccceEEeeccccceec
Q 032325 77 KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQVNVFSLMIYTCKLFN 142 (143)
Q Consensus 77 ~vgvk~ik~~~~~~~~en~~r~IlV~q~~ltp~Ar~~i~~~~~~~~iE~F~E~ELlVNIT~H~LV~ 142 (143)
+||+|+||.|+++|+++|+++||||+|+++||+|++++.+++++|+||+|+|+|||||||+|+|||
T Consensus 81 ~vgvk~Ir~~~~~~~~en~~~~IiV~q~~~t~~A~~~l~~~~~~~~iE~F~e~eLlvnit~H~lVP 146 (210)
T 3h0g_E 81 SVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQFTIETFQESDLIVNITHHELVP 146 (210)
T ss_dssp SCCTTTTGGGTHHHHHTTCSEEEECCSSCCCSHHHHTTTTTCTTCEECCCCSSSSCSCTTSBTTBC
T ss_pred ccChHHHHHHHHHHHHcCCceEEEEECCCCCHHHHHHHHHhCcCcEEEEEeehHeeEecccccccC
Confidence 999999999999999999999999999999999999999999989999999999999999999999
No 2
>1dzf_A DNA-directed RNA polymerases I, II, and III 27 KD polypeptide; RNA polymerase subunit; 1.9A {Saccharomyces cerevisiae} SCOP: c.52.3.1 d.78.1.1 PDB: 1i3q_E 1i50_E 1i6h_E 1k83_E* 1nik_E 1nt9_E 1pqv_E 1r5u_E 1r9s_E* 1r9t_E* 1sfo_E* 1twa_E* 1twc_E* 1twf_E* 1twg_E* 1twh_E* 1wcm_E 1y1v_E 1y1w_E 1y1y_E ...
Probab=100.00 E-value=1.2e-54 Score=344.52 Aligned_cols=139 Identities=32% Similarity=0.505 Sum_probs=134.6
Q ss_pred CcHHHHHHHHHHHHHHHHHhcCCCcccchhhhccCHHHHHHHhcC---CCCCcceEEEeecCCCCCCcE------EEEcC
Q 032325 3 LSDEEIKRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGE---NMKREDLVINKALRNDSSDQI------YVFFP 73 (143)
Q Consensus 3 ~~~~e~~rL~rirrTv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~---~~~r~~L~~~~~~~~dp~~~i------~VfF~ 73 (143)
+++.|+.||||+|||++|||+||||.|+++|+++|+++|+++||+ .++|++|+|++++++||++++ |||||
T Consensus 4 ~~~~e~~rl~r~rrTv~eMl~DRGY~v~~~e~~~sl~~F~~~~~~~~g~p~r~~L~~~~~~~~d~~~k~~~~~~~~VfF~ 83 (215)
T 1dzf_A 4 ENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFC 83 (215)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTTBCCCHHHHTCCHHHHHHHHBCTTSCBCGGGTCEEECBCHHHHHHCTTCCCEEEEEC
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCccCHhHhcCCHHHHHHHHccccCCCchhheEEEecCCCChhhhhccCCceEEEec
Confidence 567999999999999999999999999999999999999999998 677999999999999999998 99999
Q ss_pred CCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhccccceEeeeccceEEeeccccceec
Q 032325 74 DEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQVNVFSLMIYTCKLFN 142 (143)
Q Consensus 74 ~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~~ltp~Ar~~i~~~~~~~~iE~F~E~ELlVNIT~H~LV~ 142 (143)
++++||+|+||+|+++|+++|++|||||+|++|||+|+++++++++ |+||+|+|+||+||||+|+|||
T Consensus 84 ~~~~vgvk~ir~~~~~~~~e~~~~~IlV~q~~itp~Ak~~l~~~~~-~~iE~F~e~eL~vni~~H~lVP 151 (215)
T 1dzf_A 84 DEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPP-ATIETFNEAALVVNITHHELVP 151 (215)
T ss_dssp SSSEECHHHHHHHHHHHHHTTCSEEEEEESSEECHHHHTTTTSSTT-CEEEEEEHHHHSSCGGGSTTSC
T ss_pred CCCccchHHHHHHHHHHHhcCCceEEEEECCCCChHHHHHHHHhcC-ceEEEeehHHheeccccceecc
Confidence 9999999999999999999999999999999999999999999998 8999999999999999999999
No 3
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=76.11 E-value=3.2 Score=30.19 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=54.3
Q ss_pred HHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHHHHhhcCCCe
Q 032325 18 VMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97 (143)
Q Consensus 18 v~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~~~en~~r 97 (143)
+.-||++.||.|..--.+.+.++|.+...+. +.+-+-++ +.. .-....++.+++.+++.+...
T Consensus 38 va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~-~~diV~lS--------------~~~--~~~~~~~~~~i~~L~~~g~~~ 100 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGLRQTPEQVAMAAVQE-DVDVIGVS--------------ILN--GAHLHLMKRLMAKLRELGADD 100 (161)
T ss_dssp HHHHHHHTTCEEECCCSBCCHHHHHHHHHHT-TCSEEEEE--------------ESS--SCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHhc-CCCEEEEE--------------eec--hhhHHHHHHHHHHHHhcCCCC
Confidence 4568999999999877788999998875322 12222222 222 245788999999999888744
Q ss_pred EEEEEcCCCCHHHHHHHHhc
Q 032325 98 AILVVQQNLTPFARTCIQEI 117 (143)
Q Consensus 98 ~IlV~q~~ltp~Ar~~i~~~ 117 (143)
..+++.+.+.+..-..+.++
T Consensus 101 i~v~vGG~~~~~~~~~l~~~ 120 (161)
T 2yxb_A 101 IPVVLGGTIPIPDLEPLRSL 120 (161)
T ss_dssp SCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEeCCCchhcHHHHHHC
Confidence 54556677766443334443
No 4
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=76.04 E-value=8.4 Score=26.64 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=43.3
Q ss_pred HHHHHHHhcCC----CCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHHHHhhcCCCe
Q 032325 38 KEQFIAKFGEN----MKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97 (143)
Q Consensus 38 l~~F~~~y~~~----~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~~~en~~r 97 (143)
+.+|.++|... |.-+..-|++-+++ ..-+-|-|++-.....+.||.+++..++.|++.
T Consensus 46 l~dFIsryARTDEImPEDKTvGFvviN~d--KK~mSvsFsd~~~~~K~~i~ei~kkykd~Gykv 107 (111)
T 2jmk_A 46 MMDFISRFARTDEIMPEDKTVGFVVVNAD--KKLMSVSFSDIDENMKKVIKATAEKFKNKGFKV 107 (111)
T ss_dssp HHHHHHHHCCCSCCCSSCEEEEEEEEETT--TTEEEEEECSCCTTHHHHHHHHHHHGGGGCCEE
T ss_pred HHHHHHHhhcccccCCCCceeEEEEEecC--CeEEEEEeehhhhhHHHHHHHHHHHhhcCCcee
Confidence 88999999643 22344555554443 345789999988888999999999999988764
No 5
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=66.32 E-value=13 Score=28.24 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=52.3
Q ss_pred HHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHHHHhhcCC--
Q 032325 18 VMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENV-- 95 (143)
Q Consensus 18 v~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~~~en~-- 95 (143)
+.-||++.||.|-.--.+.+.++|.+.-.+. +.+- |.+-|+.--.-....++.+++.+.+.+.
T Consensus 112 v~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~-~~d~--------------v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~ 176 (215)
T 3ezx_A 112 VTTMLGANGFQIVDLGVDVLNENVVEEAAKH-KGEK--------------VLLVGSALMTTSMLGQKDLMDRLNEEKLRD 176 (215)
T ss_dssp HHHHHHHTSCEEEECCSSCCHHHHHHHHHHT-TTSC--------------EEEEEECSSHHHHTHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHCCCeEEEcCCCCCHHHHHHHHHHc-CCCE--------------EEEEchhcccCcHHHHHHHHHHHHHcCCCC
Confidence 4568999999998866678899997764322 1122 3331222222356779999999999988
Q ss_pred CeEEEEEcCCCCHHHH
Q 032325 96 FRAILVVQQNLTPFAR 111 (143)
Q Consensus 96 ~r~IlV~q~~ltp~Ar 111 (143)
+--|+|-...+|+.-.
T Consensus 177 ~v~v~vGG~~~~~~~a 192 (215)
T 3ezx_A 177 SVKCMFGGAPVSDKWI 192 (215)
T ss_dssp GSEEEEESSSCCHHHH
T ss_pred CCEEEEECCCCCHHHH
Confidence 4557777777776543
No 6
>4f0q_A Restriction endonuclease; cytosine methylation-dependent endonuclease, hydrolase; 2.05A {Mycobacterium SP} PDB: 4f0p_A
Probab=56.11 E-value=7.7 Score=33.48 Aligned_cols=51 Identities=10% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhccccceEeeec
Q 032325 73 PDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQ 127 (143)
Q Consensus 73 ~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~~ltp~Ar~~i~~~~~~~~iE~F~ 127 (143)
..+.+||.+.|+.|+..|. +...||+|+-+.-|..|++.+.+-. +.|.+..
T Consensus 360 ~~~~~Vg~~~I~~f~g~l~--~~~~GifITTS~Ft~~A~~ea~~d~--~pI~LId 410 (456)
T 4f0q_A 360 QPTSSVSPEQVARVVARLR--RGWIGVYVTTGSFSRQAQVEIIDDQ--YPVVLIA 410 (456)
T ss_dssp CTTSEECHHHHHHHHTTCC--TTEEEEEEESSEECHHHHHHHHHTT--CCEEEEC
T ss_pred cCCCCCCHHHHHHHHHhhc--CCCeEEEEECCcCCHHHHHHHHcCC--CcEEEEc
Confidence 3456799999999999984 5678999999999999988776633 3566554
No 7
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=54.15 E-value=28 Score=25.63 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=49.2
Q ss_pred HHHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHHHHhhcCCC
Q 032325 17 TVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVF 96 (143)
Q Consensus 17 Tv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~~~en~~ 96 (143)
=+..||+.+||.|..--.+.+.++|.+.-... +.+-+-++ +.. .-....++.+++.+++.+..
T Consensus 107 ~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~-~~d~v~lS--------------~~~--~~~~~~~~~~i~~l~~~~~~ 169 (210)
T 1y80_A 107 LVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY-QPDIVGMS--------------ALL--TTTMMNMKSTIDALIAAGLR 169 (210)
T ss_dssp HHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH-CCSEEEEE--------------CCS--GGGTHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-CCCEEEEe--------------ccc--cccHHHHHHHHHHHHhcCCC
Confidence 35678999999998766778899998764221 12222222 222 12478899999999988864
Q ss_pred --eEEEEEcCCCCHH
Q 032325 97 --RAILVVQQNLTPF 109 (143)
Q Consensus 97 --r~IlV~q~~ltp~ 109 (143)
--|+|-....++.
T Consensus 170 ~~~~v~vGG~~~~~~ 184 (210)
T 1y80_A 170 DRVKVIVGGAPLSQD 184 (210)
T ss_dssp GGCEEEEESTTCCHH
T ss_pred CCCeEEEECCCCCHH
Confidence 3455555555643
No 8
>2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi}
Probab=49.11 E-value=27 Score=27.65 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=35.8
Q ss_pred cEEEEcCCC--CccchhHHHHHHHHHhhc--CCCeEEEEEcCCCCHHHHHHHHhcc
Q 032325 67 QIYVFFPDE--QKVGVKTMKTYTNRMKSE--NVFRAILVVQQNLTPFARTCIQEIS 118 (143)
Q Consensus 67 ~i~VfF~~~--~~vgvk~ik~~~~~~~~e--n~~r~IlV~q~~ltp~Ar~~i~~~~ 118 (143)
-++|+.--. ..=.+.++..|++.+.++ +=.+||+|. +.+++.|+.++.+..
T Consensus 170 ~VvIElKr~~~~~e~V~QL~~Yl~~l~~~~~~~vrGIlvA-~s~s~~ar~~l~d~g 224 (251)
T 2vld_A 170 IVVLELKRRKADLHAVSQMKRYVDSLKEEYGENVRGILVA-PSLTEGAKKLLEKEG 224 (251)
T ss_dssp EEEEEECSSCBCHHHHHHHHHHHHHHHHHHCSCEEEEEEE-SCBCHHHHHHHHHHT
T ss_pred EEEEEEeeccCCHhHHHHHHHHHHHHHhccCCCeEEEEEe-CCCCHHHHHHHHHcC
Confidence 355555331 234577888888888764 557888887 478999999988643
No 9
>1ydl_A TFIIH, general transcription factor IIH, polypeptide 5; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Homo sapiens} SCOP: d.295.1.1 PDB: 2jnj_A
Probab=47.33 E-value=14 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=29.2
Q ss_pred hcCCCeEEEEEcCCCCHHHHHHHHhcc------ccceEeeeccceEEeec
Q 032325 92 SENVFRAILVVQQNLTPFARTCIQEIS------AKFHLEVFQVNVFSLMI 135 (143)
Q Consensus 92 ~en~~r~IlV~q~~ltp~Ar~~i~~~~------~~~~iE~F~E~ELlVNI 135 (143)
+.|+.+|++|.. .|+.|+.|..+. .+|.||-..+.=|+|+-
T Consensus 9 ~~~~~kGvLI~C---Dpa~Kq~Il~lde~~~~~~kFIIedLDdtHLfV~~ 55 (79)
T 1ydl_A 9 SHGTRKGMLIEC---DPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIA 55 (79)
T ss_dssp CCCCCCCEEEEC---CHHHHHHHHHHHHTTTTSSCCEEEECSSSEEEECT
T ss_pred ccccccceEEEe---CHHHHHHHHHHhccCCcCCCEEEEEcCCceEEEcH
Confidence 578888988865 455566555442 25889998888888864
No 10
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=40.42 E-value=25 Score=27.16 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=47.1
Q ss_pred HHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHHHHhhcCCCe
Q 032325 18 VMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97 (143)
Q Consensus 18 v~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~~~en~~r 97 (143)
+..||+++||.|..--.+.+.++|.+.-... +.+-+-++ +... -....++.+++.+.+.+..-
T Consensus 143 va~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~-~~d~V~lS--------------~l~~--~~~~~~~~~i~~l~~~~~~~ 205 (258)
T 2i2x_B 143 VTALLRANGYNVVDLGRDVPAEEVLAAVQKE-KPIMLTGT--------------ALMT--TTMYAFKEVNDMLLENGIKI 205 (258)
T ss_dssp HHHHHHHTTCEEEEEEEECCSHHHHHHHHHH-CCSEEEEE--------------CCCT--TTTTHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHc-CCCEEEEE--------------eecc--CCHHHHHHHHHHHHhcCCCC
Confidence 4578899999997755677888887654221 12222222 2222 23668999999999888874
Q ss_pred EEEEEcCCCCHH
Q 032325 98 AILVVQQNLTPF 109 (143)
Q Consensus 98 ~IlV~q~~ltp~ 109 (143)
-|+|-....++.
T Consensus 206 ~v~vGG~~~~~~ 217 (258)
T 2i2x_B 206 PFACGGGAVNQD 217 (258)
T ss_dssp CEEEESTTCCHH
T ss_pred cEEEECccCCHH
Confidence 455555455543
No 11
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=37.86 E-value=11 Score=26.43 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=45.5
Q ss_pred HHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHHHHhhcCCCe
Q 032325 18 VMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFR 97 (143)
Q Consensus 18 v~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~~~en~~r 97 (143)
+--||++.||.|-.--...+.++|.+...+. +.+-+-++ +.. .-....++.+++.+++.+...
T Consensus 23 v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~-~~d~v~lS--------------~~~--~~~~~~~~~~i~~l~~~g~~~ 85 (137)
T 1ccw_A 23 LDHAFTNAGFNVVNIGVLSPQELFIKAAIET-KADAILVS--------------SLY--GQGEIDCKGLRQKCDEAGLEG 85 (137)
T ss_dssp HHHHHHHTTCEEEEEEEEECHHHHHHHHHHH-TCSEEEEE--------------ECS--STHHHHHTTHHHHHHHTTCTT
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHhc-CCCEEEEE--------------ecC--cCcHHHHHHHHHHHHhcCCCC
Confidence 4568999999999766688999998875422 12222222 222 233567888899998888743
Q ss_pred EEEEEcCC
Q 032325 98 AILVVQQN 105 (143)
Q Consensus 98 ~IlV~q~~ 105 (143)
..+++.+.
T Consensus 86 i~v~vGG~ 93 (137)
T 1ccw_A 86 ILLYVGGN 93 (137)
T ss_dssp CEEEEEES
T ss_pred CEEEEECC
Confidence 33344454
No 12
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=33.91 E-value=12 Score=30.76 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCcccchhhhccCHHHHHHH
Q 032325 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAK 44 (143)
Q Consensus 14 irrTv~eMl~DRGY~V~~~e~~~sl~~F~~~ 44 (143)
.|++|+|++++.||.|.+ -.+++++..+-
T Consensus 276 TR~sVi~LA~~~Gi~V~E--r~it~~El~~A 304 (372)
T 3dtg_A 276 TRDSLLQLATDAGFAVEE--RKIDVDEWQKK 304 (372)
T ss_dssp HHHHHHHHHHHHTCEEEE--CCCBHHHHHHH
T ss_pred HHHHHHHHHHHCCceEEE--EeCCHHHHHHH
Confidence 489999999999999987 55578877653
No 13
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=32.48 E-value=78 Score=24.97 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=35.0
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
-|.++.+|....++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 22 PF~~dg~iD~~~l~~lv~~li~~Gv~-Gl~v~GtTGE~~~Ls~eEr~~v~~ 71 (303)
T 2wkj_A 22 PFDQQQALDKASLRRLVQFNIQQGID-GLYVGGSTGEAFVQSLSEREQVLE 71 (303)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCS-EEEESSTTTTGGGSCHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCC-EEEECeeccChhhCCHHHHHHHHH
Confidence 46677899999999999999999987 7777643 477766655544
No 14
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=32.09 E-value=1.8e+02 Score=22.58 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHHHH
Q 032325 11 LFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRM 90 (143)
Q Consensus 11 L~rirrTv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~ 90 (143)
|-.-.+..+.=+..|.+.+... .+.-|.+.|| |....... ...+...+.+.|..+++.+
T Consensus 166 Ld~~~~~~l~~~~~~~~v~~H~----af~Yf~~~yG-------l~~~~~~~----------~~~~~eps~~~l~~l~~~i 224 (286)
T 3gi1_A 166 LTEEYTQKFKKVRSKTFVTQHT----AFSYLAKRFG-------LKQLGISG----------ISPEQEPSPRQLKEIQDFV 224 (286)
T ss_dssp HHHHHHHHHTTCSCCEEEEEES----CCHHHHHHTT-------CEEEEEEC----------SCC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECC----chHHHHHHCC-------CeEeeccc----------cCCCCCCCHHHHHHHHHHH
Confidence 3333333333345555554431 5777777776 33332111 1234457899999999999
Q ss_pred hhcCCCeEEEEEcCCCCHHHHHHHH
Q 032325 91 KSENVFRAILVVQQNLTPFARTCIQ 115 (143)
Q Consensus 91 ~~en~~r~IlV~q~~ltp~Ar~~i~ 115 (143)
+++++. +|++=++--+..| +.|.
T Consensus 225 k~~~v~-~if~e~~~~~~~~-~~la 247 (286)
T 3gi1_A 225 KEYNVK-TIFAEDNVNPKIA-HAIA 247 (286)
T ss_dssp HHTTCC-EEEECTTSCTHHH-HHHH
T ss_pred HHcCCC-EEEEeCCCChHHH-HHHH
Confidence 999998 5655444444444 4454
No 15
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=31.86 E-value=80 Score=24.86 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=35.1
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
-|.++.+|....++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 23 Pf~~dg~iD~~~l~~lv~~li~~Gv~-gl~v~GtTGE~~~Ls~eEr~~v~~ 72 (301)
T 1xky_A 23 PFDINGNIDFAKTTKLVNYLIDNGTT-AIVVGGTTGESPTLTSEEKVALYR 72 (301)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCC-EEEESSTTTTGGGSCHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCC-EEEECccccChhhCCHHHHHHHHH
Confidence 46677899999999999999999987 7777643 477766665544
No 16
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=29.26 E-value=1.1e+02 Score=24.17 Aligned_cols=45 Identities=4% Similarity=0.123 Sum_probs=34.8
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
-|.++.+|....++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 27 Pf~~dg~iD~~~l~~lv~~li~~Gv~-gl~v~GttGE~~~Ls~~Er~~v~~ 76 (304)
T 3cpr_A 27 PFTESGDIDIAAGREVAAYLVDKGLD-SLVLAGTTGESPTTTAAEKLELLK 76 (304)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCC-EEEESSTTTTTTTSCHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCC-EEEECccccChhhCCHHHHHHHHH
Confidence 36677899999999999999999987 7777643 477766655544
No 17
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=29.00 E-value=2.1e+02 Score=22.48 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHH
Q 032325 9 KRLFRIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTN 88 (143)
Q Consensus 9 ~rL~rirrTv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~ 88 (143)
..|=.-.+..+.=+..|.+.+... .+.-|.+.|| |........ ..+...+.+.|..+++
T Consensus 175 ~~Ld~~~~~~l~~~~~~~~v~~H~----af~Yfa~~yG-------l~~~~~~~~----------~~~~eps~~~l~~l~~ 233 (312)
T 2o1e_A 175 QDLDKLYRTTAKKAEKKEFITQHT----AFGYLAKEYG-------LKQVPIAGL----------SPDQEPSAASLAKLKT 233 (312)
T ss_dssp HHHHHHHHHHHHSCSCCEEEESSC----TTHHHHHHTT-------CEEEECSSC----------CSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCEEEEECC----chHHHHHHCC-------CeEEEeecc----------CCCCCCCHHHHHHHHH
Confidence 334444444444455666666532 5778888887 333321111 2244678999999999
Q ss_pred HHhhcCCCeEEEEEcCCCCHHHHHHHHh
Q 032325 89 RMKSENVFRAILVVQQNLTPFARTCIQE 116 (143)
Q Consensus 89 ~~~~en~~r~IlV~q~~ltp~Ar~~i~~ 116 (143)
.++++++. +| ++....++...+.|.+
T Consensus 234 ~ik~~~v~-~I-f~e~~~~~~~~~~ia~ 259 (312)
T 2o1e_A 234 YAKEHNVK-VI-YFEEIASSKVADTLAS 259 (312)
T ss_dssp HTTSSCCC-EE-ECSSCCCHHHHHHHHH
T ss_pred HHHHcCCC-EE-EEeCCCChHHHHHHHH
Confidence 99999998 44 4455666665555553
No 18
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=26.84 E-value=63 Score=25.28 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=35.7
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEc-----CCCCHHHHHHHHhc
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ-----QNLTPFARTCIQEI 117 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q-----~~ltp~Ar~~i~~~ 117 (143)
-|.++.+|....++.+++++.+.|++ ||+|.. ..||..-|+.+-+.
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~~Gv~-gl~v~GtTGE~~~Ls~eEr~~v~~~ 60 (288)
T 2nuw_A 10 PFDKQGKVNVDALKTHAKNLLEKGID-AIFVNGTTGLGPALSKDEKRQNLNA 60 (288)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCC-EEEETSTTTTGGGSCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCC-EEEECccccChhhCCHHHHHHHHHH
Confidence 36677899999999999999999987 777764 34777777666554
No 19
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=26.46 E-value=1e+02 Score=24.06 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=34.5
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
-|.++.+|....++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~~Gv~-gl~~~GttGE~~~Ls~~Er~~v~~ 61 (292)
T 2ojp_A 12 PMDEKGNVCRASLKKLIDYHVASGTS-AIVSVGTTGESATLNHDEHADVVM 61 (292)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTCC-EEEESSTTTTGGGSCHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCC-EEEECccccchhhCCHHHHHHHHH
Confidence 36677899999999999999999987 7777643 477766655544
No 20
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=26.31 E-value=70 Score=25.10 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=34.8
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEc-----CCCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ-----QNLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q-----~~ltp~Ar~~i~~ 116 (143)
-|.++.+|....++.+++++.+.|++ ||+|.. ..||..-|+.+-+
T Consensus 14 Pf~~dg~iD~~~l~~lv~~li~~Gv~-gl~~~GttGE~~~Ls~~Er~~v~~ 63 (294)
T 3b4u_A 14 PFKTDGTVDIDAMIAHARRCLSNGCD-SVTLFGTTGEGCSVGSRERQAILS 63 (294)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCS-EEEESSTTTTGGGSCHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCC-EEEECccccChhhCCHHHHHHHHH
Confidence 46677899999999999999999997 777764 3477766665544
No 21
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=26.29 E-value=69 Score=25.10 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=35.5
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEc-----CCCCHHHHHHHHhc
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ-----QNLTPFARTCIQEI 117 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q-----~~ltp~Ar~~i~~~ 117 (143)
-|.++.+|....++.+++++.+.|++ ||+|.. ..||..-|+.+-+.
T Consensus 10 Pf~~dg~iD~~~l~~lv~~li~~Gv~-gl~~~GttGE~~~Ls~eEr~~v~~~ 60 (293)
T 1w3i_A 10 PFTKDNRIDKEKLKIHAENLIRKGID-KLFVNGTTGLGPSLSPEEKLENLKA 60 (293)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHTTCC-EEEESSTTTTGGGSCHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcCCC-EEEECccccChhhCCHHHHHHHHHH
Confidence 46677899999999999999999987 777764 24777766665543
No 22
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B*
Probab=25.60 E-value=38 Score=23.62 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=24.6
Q ss_pred HHHHhcCCCcccchhh---hccCHHHHHHHhcCC
Q 032325 18 VMQMLRDRGYFVGDFE---INMSKEQFIAKFGEN 48 (143)
Q Consensus 18 v~eMl~DRGY~V~~~e---~~~sl~~F~~~y~~~ 48 (143)
+=|+|..+||.|.+.| +..-||+-....|+.
T Consensus 24 ~DelLA~lGYkVrsSDma~vAQkLEqLE~vmg~a 57 (110)
T 2zsh_B 24 MDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNV 57 (110)
T ss_dssp BCHHHHTTTCBCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCccccchhHHHHHHHHHHHHHHHccc
Confidence 3479999999999888 667788887777743
No 23
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=25.42 E-value=74 Score=25.17 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=33.8
Q ss_pred cCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 72 F~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
|.++.+|..+.++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 27 f~~dg~iD~~~l~~lv~~li~~Gv~-gi~v~GttGE~~~Lt~~Er~~v~~ 75 (304)
T 3l21_A 27 FSGDGSLDTATAARLANHLVDQGCD-GLVVSGTTGESPTTTDGEKIELLR 75 (304)
T ss_dssp BCTTSCBCHHHHHHHHHHHHHTTCS-EEEESSTTTTGGGSCHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCC-EEEeCccccchhhCCHHHHHHHHH
Confidence 6777899999999999999999997 7777533 356666655544
No 24
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=25.31 E-value=74 Score=24.99 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=33.8
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
-|.++.+|....++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 18 Pf~~dg~iD~~~l~~lv~~li~~Gv~-gl~~~GttGE~~~Ls~~Er~~v~~ 67 (297)
T 3flu_A 18 PMNQDGSIHYEQLRDLIDWHIENGTD-GIVAVGTTGESATLSVEEHTAVIE 67 (297)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTTCC-EEEESSTTTTGGGSCHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCC-EEEeCccccCcccCCHHHHHHHHH
Confidence 36777899999999999999999997 7777543 256665555443
No 25
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=24.86 E-value=1.4e+02 Score=23.42 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=46.1
Q ss_pred hcCC-CcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCC-CccchhHHHHHHHHHhhcCCCe-E
Q 032325 22 LRDR-GYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDE-QKVGVKTMKTYTNRMKSENVFR-A 98 (143)
Q Consensus 22 l~DR-GY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~-~~vgvk~ik~~~~~~~~en~~r-~ 98 (143)
|++. ||.|-.-=.+.+.++|.+.--+. +.+-+ .+-+.-. ..+.+..++.+++.+.+++... .
T Consensus 152 L~~~~G~eVi~LG~~vp~e~iv~aa~e~-~~d~V--------------glS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i 216 (262)
T 1xrs_B 152 LERYEMIDAYNLGSQVANEDFIKKAVEL-EADVL--------------LVSQTVTQKNVHIQNMTHLIELLEAEGLRDRF 216 (262)
T ss_dssp GGGCTTEEEEECCSSBCHHHHHHHHHHT-TCSEE--------------EEECCCCTTSHHHHHHHHHHHHHHHTTCGGGS
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHc-CCCEE--------------EEEeecCCccchHHHHHHHHHHHHhcCCCCCC
Confidence 8889 99997755677899998875322 12222 2223222 2456899999999999988753 3
Q ss_pred -EEEEcCCCCH
Q 032325 99 -ILVVQQNLTP 108 (143)
Q Consensus 99 -IlV~q~~ltp 108 (143)
|+|-...+++
T Consensus 217 ~vivGG~~~~~ 227 (262)
T 1xrs_B 217 VLLCGGPRINN 227 (262)
T ss_dssp EEEEECTTCCH
T ss_pred EEEEECCcCCH
Confidence 4444444444
No 26
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=24.62 E-value=1.3e+02 Score=21.46 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhc
Q 032325 82 TMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEI 117 (143)
Q Consensus 82 ~ik~~~~~~~~en~~r~IlV~q~~ltp~Ar~~i~~~ 117 (143)
.++..++++.+-|+. ++++|.++++.|.+-+...
T Consensus 60 ~l~~~v~kI~~~g~n--VVl~~k~I~d~a~~~l~k~ 93 (159)
T 1ass_A 60 TFKQMVEKIKKSGAN--VVLCQKGIDDVAQHYLAKE 93 (159)
T ss_dssp HHHHHHHHHHHTTCS--EEEESSCBCHHHHHHHHHT
T ss_pred HHHHHhhhhhhCCCe--EEEECCccCHHHHHHHHHC
Confidence 367888888888877 7789999999998887654
No 27
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=23.92 E-value=72 Score=25.22 Aligned_cols=48 Identities=13% Similarity=0.062 Sum_probs=36.3
Q ss_pred EEEcCCCCccchhHHHHHHHHHhhcCCCeEEEEEc-----CCCCHHHHHHHHhc
Q 032325 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ-----QNLTPFARTCIQEI 117 (143)
Q Consensus 69 ~VfF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q-----~~ltp~Ar~~i~~~ 117 (143)
..-|.++.+|....++.+++++.+.|++ ||+|.. ..||..-|+.+-+.
T Consensus 23 vTPf~~dg~iD~~~l~~lv~~li~~Gv~-Gl~v~GtTGE~~~Ls~~Er~~v~~~ 75 (307)
T 3s5o_A 23 TTPFTATAEVDYGKLEENLHKLGTFPFR-GFVVQGSNGEFPFLTSSERLEVVSR 75 (307)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHTTSCCS-EEEESSGGGTGGGSCHHHHHHHHHH
T ss_pred EccCCCCCCcCHHHHHHHHHHHHHcCCC-EEEECccccchhhCCHHHHHHHHHH
Confidence 3347778899999999999999999987 777764 23777666655543
No 28
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=23.89 E-value=78 Score=24.75 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=34.5
Q ss_pred EcCCCCccchhHHHHHHHHHhh-cCCCeEEEEEc-----CCCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKS-ENVFRAILVVQ-----QNLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~-en~~r~IlV~q-----~~ltp~Ar~~i~~ 116 (143)
-|.++.+|....++.+++++.+ .|++ ||+|.. ..||..-|+.+-+
T Consensus 14 Pf~~dg~iD~~~l~~lv~~li~~~Gv~-gl~~~GttGE~~~Ls~~Er~~v~~ 64 (293)
T 1f6k_A 14 SFNEDGTINEKGLRQIIRHNIDKMKVD-GLYVGGSTGENFMLSTEEKKEIFR 64 (293)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTSCCS-EEEESSGGGTGGGSCHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHhhCCCc-EEEeCccccchhhCCHHHHHHHHH
Confidence 3667789999999999999998 8887 777764 3477766655443
No 29
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=23.56 E-value=74 Score=24.85 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=33.4
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
-|.++.+|..+.++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~~Gv~-gl~~~GttGE~~~Ls~~Er~~v~~ 61 (291)
T 3tak_A 12 PMLKDGGVDWKSLEKLVEWHIEQGTN-SIVAVGTTGEASTLSMEEHTQVIK 61 (291)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHHTCC-EEEESSTTTTGGGSCHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHCCCC-EEEECccccccccCCHHHHHHHHH
Confidence 36777899999999999999999998 6766543 256655555443
No 30
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=23.12 E-value=80 Score=25.02 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=34.1
Q ss_pred cCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 72 F~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
|.++.+|..+.++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 20 f~~dg~iD~~~l~~lv~~li~~Gv~-Gl~v~GtTGE~~~Lt~~Er~~v~~ 68 (313)
T 3dz1_A 20 FHDDGKIDDVSIDRLTDFYAEVGCE-GVTVLGILGEAPKLDAAEAEAVAT 68 (313)
T ss_dssp BCTTSCBCHHHHHHHHHHHHHTTCS-EEEESTGGGTGGGSCHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCC-EEEeCccCcChhhCCHHHHHHHHH
Confidence 6677899999999999999999998 7777532 367766665554
No 31
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=22.93 E-value=1.9e+02 Score=19.90 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHH
Q 032325 64 SSDQIYVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQ 115 (143)
Q Consensus 64 p~~~i~VfF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~~ltp~Ar~~i~ 115 (143)
+..+++||.+. .+....+.+.+.+.++. +..+.+.+++..|+.+.
T Consensus 33 ~~~~~lVF~~~-----~~~~~~l~~~L~~~~~~--~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 33 TIGQAIIFCQT-----RRNAKWLTVEMIQDGHQ--VSLLSGELTVEQRASII 77 (175)
T ss_dssp CCSEEEEECSC-----HHHHHHHHHHHHTTTCC--EEEECSSCCHHHHHHHH
T ss_pred CCCCEEEEECC-----HHHHHHHHHHHHHcCCc--EEEEeCCCCHHHHHHHH
Confidence 34568888764 67788888888887765 45567899998876543
No 32
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=22.91 E-value=65 Score=25.54 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=35.1
Q ss_pred EEEcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 69 ~VfF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
..-|.++.+|..+.++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 17 vTPf~~dg~iD~~~l~~lv~~li~~Gv~-gl~v~GtTGE~~~Ls~~Er~~v~~ 68 (309)
T 3fkr_A 17 PTTFADTGDLDLASQKRAVDFMIDAGSD-GLCILANFSEQFAITDDERDVLTR 68 (309)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCS-CEEESSGGGTGGGSCHHHHHHHHH
T ss_pred eCCCCcCCCcCHHHHHHHHHHHHHcCCC-EEEECccccCcccCCHHHHHHHHH
Confidence 3347778899999999999999999998 7777532 366666655544
No 33
>3vus_A Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylas; deacetyl hydrolase; 1.65A {Escherichia coli}
Probab=22.84 E-value=2e+02 Score=22.00 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=42.5
Q ss_pred HHHHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHHHHhhcCC
Q 032325 16 RTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENV 95 (143)
Q Consensus 16 rTv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~~~en~ 95 (143)
+.-++.|++.||.+ +|++++.+...... .-|...+++-|-+... .........+++.|+
T Consensus 34 ~~ql~~L~~~gy~~------vs~~~~~~~~~~~~------------~~~~~~v~lTfDDg~~---~~~~~~~~~l~~~~~ 92 (268)
T 3vus_A 34 REQFAWLRENGYQP------VSIAQIREAHRGGK------------PLPEKAVVLTFDDGYQ---SFYTRVFPILQAFQW 92 (268)
T ss_dssp HHHHHHHHHTTCEE------CCHHHHHHHHTTSS------------CCCTTEEEEEEEETBH---HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCEE------ecHHHHHHHHhcCC------------CCCCCEEEEEEeCCch---hHHHHHHHHHHHcCC
Confidence 44577888899886 46677766543221 1223346666755432 233445677889999
Q ss_pred CeEEEEEcC
Q 032325 96 FRAILVVQQ 104 (143)
Q Consensus 96 ~r~IlV~q~ 104 (143)
...++|+.+
T Consensus 93 ~atfFv~~~ 101 (268)
T 3vus_A 93 PAVWAPVGS 101 (268)
T ss_dssp CEEEEECHH
T ss_pred CEEEEEecc
Confidence 998988763
No 34
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=22.49 E-value=92 Score=26.68 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=47.1
Q ss_pred CCCCcEEEEcCCCCccch-hHHHHHHHHHhhcCCC-eEEEEEcCC-CCHHHHHHHHhccccceEeeec
Q 032325 63 DSSDQIYVFFPDEQKVGV-KTMKTYTNRMKSENVF-RAILVVQQN-LTPFARTCIQEISAKFHLEVFQ 127 (143)
Q Consensus 63 dp~~~i~VfF~~~~~vgv-k~ik~~~~~~~~en~~-r~IlV~q~~-ltp~Ar~~i~~~~~~~~iE~F~ 127 (143)
+++++.-|-|+.+|.+=+ +.++.-..+|.+.|=. +.-||+-+. |++.|.+.+.+++..-.|..-.
T Consensus 131 ~tn~~~~IWFSn~P~~fMp~e~q~~Lle~re~nPG~~i~LVYsStlLn~~a~~ql~~faken~IsllD 198 (525)
T 3jsz_A 131 KTNVQTSIWFSIKPELFMPSKQQEALKRRREQYPGCKIRLIYSSSLLNPEANRQMKAFAKKQNISLID 198 (525)
T ss_dssp ESSEEEEECCCSSTTCSSCHHHHHHHHHHHHHCTTCEEEEEECSTTSCHHHHHHHHHHHHHTTEEEEE
T ss_pred cCCceEEEEEeCChhHhccHHHHHHHHHHHhhCCCCeEEEEeehhhcCHHHHHHHHHHHHhcCceEee
Confidence 355677888998887655 4677777778777776 555777665 6999999999998754554433
No 35
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=22.23 E-value=68 Score=21.15 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCCcccchhhhccCHHHHHHHhcCCC
Q 032325 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENM 49 (143)
Q Consensus 14 irrTv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~ 49 (143)
.|+-|.+|+.+-- +++|+ ++.|.++||+-.
T Consensus 48 lR~~V~~~l~~G~---sd~eI---~~~~v~RYG~fV 77 (84)
T 2hl7_A 48 LRKQIYGQLQQGK---SDGEI---VDYMVARYGDFV 77 (84)
T ss_dssp HHHHHHHHHHHTC---CHHHH---HHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCC---CHHHH---HHHHHHhcCCee
Confidence 4677888987543 56666 789999999864
No 36
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=22.11 E-value=1.5e+02 Score=21.48 Aligned_cols=36 Identities=3% Similarity=0.163 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhcc
Q 032325 81 KTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEIS 118 (143)
Q Consensus 81 k~ik~~~~~~~~en~~r~IlV~q~~ltp~Ar~~i~~~~ 118 (143)
+.++..++++.+-|+. ++++|.++++.|.+-+.+..
T Consensus 65 ~~l~~~v~kI~~~g~n--VVl~~k~I~d~a~~~l~k~g 100 (178)
T 1gml_A 65 EYIHQLCEDIIQLKPD--VVITEKGISDLAQHYLMRAN 100 (178)
T ss_dssp HHHHHHHHHHHTTCCS--EEEESSCBCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCc--EEEECCcccHHHHHHHHHCC
Confidence 3567788888888877 77889999999988776543
No 37
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=21.70 E-value=83 Score=25.27 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=34.6
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
-|.++.+|....++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 45 PF~~dg~iD~~~l~~lv~~li~~Gv~-Gl~v~GtTGE~~~Ls~eEr~~vi~ 94 (332)
T 2r8w_A 45 PADEAGRVDIEAFSALIARLDAAEVD-SVGILGSTGIYMYLTREERRRAIE 94 (332)
T ss_dssp CBCTTCCBCHHHHHHHHHHHHHHTCS-EEEESSTTTTGGGSCHHHHHHHHH
T ss_pred CcCCCCCcCHHHHHHHHHHHHHcCCC-EEEECccccChhhCCHHHHHHHHH
Confidence 46677899999999999999999997 7777643 477766655544
No 38
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=21.64 E-value=2.8e+02 Score=21.40 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCCCCCCcEEEEcCCCCccchhHHHHHHHHHhhcCC
Q 032325 16 RTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRMKSENV 95 (143)
Q Consensus 16 rTv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~~~en~ 95 (143)
+..+.=+..|.+.+... .+.-|.+.|| |...... ..+...+.+.|..+++.++++++
T Consensus 182 ~~~l~~~~~~~~v~~H~----af~Yf~~~yG-------l~~~~~~------------~~~~eps~~~l~~l~~~ik~~~v 238 (291)
T 1pq4_A 182 GQILQPLPQRKFIVFHP----SWAYFARDYN-------LVQIPIE------------VEGQEPSAQELKQLIDTAKENNL 238 (291)
T ss_dssp HHHHTTCSCCEEEESSC----CCHHHHHHTT-------CEEEESC------------BTTBCCCHHHHHHHHHHHHTTTC
T ss_pred HHHHhCCCCCEEEEECC----chHHHHHHCC-------CEEeecc------------cCCCCCCHHHHHHHHHHHHHcCC
Confidence 33333344566555432 4667777776 3332211 11345789999999999999999
Q ss_pred CeEEEEEcCCCCHHHHHHH
Q 032325 96 FRAILVVQQNLTPFARTCI 114 (143)
Q Consensus 96 ~r~IlV~q~~ltp~Ar~~i 114 (143)
. +|++=++--+..| +.|
T Consensus 239 ~-~If~e~~~~~~~~-~~i 255 (291)
T 1pq4_A 239 T-MVFGETQFSTKSS-EAI 255 (291)
T ss_dssp C-EEEEETTSCCHHH-HHH
T ss_pred C-EEEEeCCCChHHH-HHH
Confidence 7 6666444444444 555
No 39
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=21.62 E-value=45 Score=26.85 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCcccchhhhccCHHHHHHHhcCCCCCcceEEEeecCC
Q 032325 13 RIRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMKREDLVINKALRN 62 (143)
Q Consensus 13 rirrTv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~r~~L~~~~~~~~ 62 (143)
..++.+++.|.+.||.|...-++-. .||-...|+++-+++.+.+
T Consensus 127 ~~~~~i~~~l~~~GY~v~~~vl~a~------~~GvPQ~R~R~fiva~r~~ 170 (333)
T 4h0n_A 127 TVRNLFIDKLKECNFIYQEFLLCPS------TVGVPNSRLRYYCTARRNN 170 (333)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECTT------TTTCSCCCCEEEEEEEETT
T ss_pred hHHHHHHHHHHhCCCeEEEEEecHH------HcCCCccceEEEEEEEeCC
Confidence 3567889999999999987766544 5788888999999887765
No 40
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=21.59 E-value=79 Score=25.15 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=34.1
Q ss_pred cCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 72 F~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
|.++.+|..+.++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 35 f~~dg~iD~~~l~~lv~~li~~Gv~-Gl~v~GtTGE~~~Ls~~Er~~v~~ 83 (314)
T 3qze_A 35 FDAQGRLDWDSLAKLVDFHLQEGTN-AIVAVGTTGESATLDVEEHIQVIR 83 (314)
T ss_dssp BCTTSCBCHHHHHHHHHHHHHHTCC-EEEESSGGGTGGGCCHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCC-EEEECccccChhhCCHHHHHHHHH
Confidence 6778899999999999999999997 7777532 367666655544
No 41
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.99 E-value=1e+02 Score=21.69 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=26.5
Q ss_pred eecCCCCCCcEEEEcCCCCccchhHHHHHHHHH
Q 032325 58 KALRNDSSDQIYVFFPDEQKVGVKTMKTYTNRM 90 (143)
Q Consensus 58 ~~~~~dp~~~i~VfF~~~~~vgvk~ik~~~~~~ 90 (143)
++...+.+++.+..||-.++|+-..||.+++..
T Consensus 13 ~s~~~~~~~rtiaL~~ipDtvndarIr~lve~~ 45 (117)
T 2l9w_A 13 ASRNSKELETLICLFPLSDKVSPSLICQFLQEE 45 (117)
T ss_dssp HCCCTTTTTSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred hccCCccCCcEEEEecCCCCCCHHHHHHHHhhh
Confidence 344445557788888888899999999999987
No 42
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=20.97 E-value=81 Score=25.14 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=33.5
Q ss_pred cCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 72 FPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 72 F~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
|.++.+|....++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 34 f~~dg~iD~~~l~~li~~li~~Gv~-Gl~v~GtTGE~~~Ls~~Er~~v~~ 82 (315)
T 3si9_A 34 FDDNGAIDEKAFCNFVEWQITQGIN-GVSPVGTTGESPTLTHEEHKRIIE 82 (315)
T ss_dssp BCTTSCBCHHHHHHHHHHHHHTTCS-EEECSSTTTTGGGSCHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCC-EEEeCccccCccccCHHHHHHHHH
Confidence 6777899999999999999999998 6766542 356665555443
No 43
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=20.83 E-value=74 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCCcccchhhhccCHHHHHHHhcCCCC
Q 032325 14 IRRTVMQMLRDRGYFVGDFEINMSKEQFIAKFGENMK 50 (143)
Q Consensus 14 irrTv~eMl~DRGY~V~~~e~~~sl~~F~~~y~~~~~ 50 (143)
.|+-|.+|+.+-- +++|+ ++.|.++||+-..
T Consensus 45 lR~~Vre~l~~G~---Sd~eI---~~~mv~RYGdfVl 75 (90)
T 2kw0_A 45 LRQKVYELMQEGK---SKKEI---VDYMVARYGNFVT 75 (90)
T ss_dssp HHHHHHHHHHHTC---CHHHH---HHHHHHHHTTTCB
T ss_pred HHHHHHHHHHcCC---CHHHH---HHHHHHhcCCeEE
Confidence 4677888887543 56666 7899999998643
No 44
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=20.67 E-value=67 Score=26.04 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHHHhhcCCCeEEEEEcCCCCHHHHHHHHhccccceEeeecc
Q 032325 77 KVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCIQEISAKFHLEVFQV 128 (143)
Q Consensus 77 ~vgvk~ik~~~~~~~~en~~r~IlV~q~~ltp~Ar~~i~~~~~~~~iE~F~E 128 (143)
-+|-..++.+-+.+++-+.+|..||+.......+.+....+... .+++|..
T Consensus 18 ~~G~g~~~~l~~~l~~~g~~r~liVtd~~~~~~~~~v~~~L~~~-~~~~f~~ 68 (358)
T 3jzd_A 18 VFGAGSSSQVAAEVERLGAKRALVLCTPNQQAEAERIADLLGPL-SAGVYAG 68 (358)
T ss_dssp EESTTGGGGHHHHHHHTTCSCEEEECCGGGHHHHHHHHHHHGGG-EEEEECC
T ss_pred EECCCHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHhccC-CEEEecC
Confidence 45666666666777777888998888776655555544545432 5566643
No 45
>2ex2_A Penicillin-binding protein 4; cephem, penem, D-Ala alanine-carboxypeptidase, D-alanyl-D-alanine-endopeptidase, hydrolase; 1.55A {Escherichia coli} SCOP: e.3.1.3 PDB: 2ex6_A* 2ex8_A* 2ex9_A* 2exa_A* 2exb_A*
Probab=20.62 E-value=1.1e+02 Score=25.70 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=29.9
Q ss_pred cEEEEcCCCCccchhHHHHHHHHHhhcCCCeE
Q 032325 67 QIYVFFPDEQKVGVKTMKTYTNRMKSENVFRA 98 (143)
Q Consensus 67 ~i~VfF~~~~~vgvk~ik~~~~~~~~en~~r~ 98 (143)
.+++.+.+||.++...+..++++|.+.|+++.
T Consensus 81 dl~l~gggDp~l~~~~l~~la~~l~~~GI~~i 112 (458)
T 2ex2_A 81 DLVARFGADPTLKRQDIRNMVATLKKSGVNQI 112 (458)
T ss_dssp EEEEECCCCTTCCHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEeCCCcccCHHHHHHHHHHHHhcCCceE
Confidence 38999999999999999999999999999876
No 46
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.39 E-value=1.6e+02 Score=22.91 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=33.7
Q ss_pred EcCCCCccchhHHHHHHHHHhhcCCCeEEEEEcC-----CCCHHHHHHHHh
Q 032325 71 FFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQQ-----NLTPFARTCIQE 116 (143)
Q Consensus 71 fF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q~-----~ltp~Ar~~i~~ 116 (143)
-|.++. |....++.+++++.+.|++ ||+|..+ .||..-|+.+-+
T Consensus 13 Pf~~dg-iD~~~l~~lv~~li~~Gv~-gl~~~GttGE~~~Ls~~Er~~v~~ 61 (291)
T 3a5f_A 13 PFTNTG-VDFDKLSELIEWHIKSKTD-AIIVCGTTGEATTMTETERKETIK 61 (291)
T ss_dssp CBCSSS-BCHHHHHHHHHHHHHTTCC-EEEESSGGGTGGGSCHHHHHHHHH
T ss_pred CcCCCC-cCHHHHHHHHHHHHHcCCC-EEEECccccChhhCCHHHHHHHHH
Confidence 366677 9999999999999999987 7777643 477766655544
No 47
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=20.22 E-value=57 Score=27.55 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHHHHHHHHhcCCCc
Q 032325 3 LSDEEIKRLFRIRRTVMQMLRDRGY 27 (143)
Q Consensus 3 ~~~~e~~rL~rirrTv~eMl~DRGY 27 (143)
.++.+..+||++|+.+.+.++..|.
T Consensus 326 ~~~~~~~~lW~~R~~~~~~~~~~g~ 350 (476)
T 3pm9_A 326 NSVQQQQAFWKLREEISPAQKPEGG 350 (476)
T ss_dssp CSHHHHHHHHHHHHTHHHHTGGGCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3567889999999999999888886
No 48
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=20.05 E-value=85 Score=25.34 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=35.3
Q ss_pred EEEcCCCCccchhHHHHHHHHHhhcCCCeEEEEEc-----CCCCHHHHHHHHh
Q 032325 69 YVFFPDEQKVGVKTMKTYTNRMKSENVFRAILVVQ-----QNLTPFARTCIQE 116 (143)
Q Consensus 69 ~VfF~~~~~vgvk~ik~~~~~~~~en~~r~IlV~q-----~~ltp~Ar~~i~~ 116 (143)
..-|.++.+|....++.+++++.+.|++ ||+|.. ..||..-|+.+-+
T Consensus 40 vTPF~~dg~ID~~~l~~lv~~li~~Gv~-Gl~v~GtTGE~~~Ls~eEr~~vi~ 91 (343)
T 2v9d_A 40 STIFTADGQLDKPGTAALIDDLIKAGVD-GLFFLGSGGEFSQLGAEERKAIAR 91 (343)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHTTCS-CEEESSTTTTGGGSCHHHHHHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHcCCC-EEEeCccccChhhCCHHHHHHHHH
Confidence 3447777899999999999999999997 677754 2467666655544
No 49
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=20.00 E-value=72 Score=25.41 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCCcccch---hhhccCHHHHHHHhc
Q 032325 13 RIRRTVMQMLRDRGYFVGD---FEINMSKEQFIAKFG 46 (143)
Q Consensus 13 rirrTv~eMl~DRGY~V~~---~e~~~sl~~F~~~y~ 46 (143)
|++.-. +.|.++||..+. .-++.|-++|.++|+
T Consensus 305 ri~~R~-~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~ 340 (343)
T 3mva_O 305 TLKSRI-KELVNAGCNLSTLNITLLSWSKKRYEAKLK 340 (343)
T ss_dssp HHHHHH-HHHHTTTCCSSSSCGGGGGSCHHHHHHHHH
T ss_pred HHHHHH-HHHHHCCCCCCCCcchhhcCCHHHHHHHHh
Confidence 444333 889999999875 456789999999996
Done!