Query 032326
Match_columns 143
No_of_seqs 109 out of 507
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 20:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1id3_C Histone H2A.1; nucleoso 100.0 3E-47 1E-51 285.5 12.1 121 9-130 3-124 (131)
2 1f66_C Histone H2A.Z; nucleoso 100.0 6.2E-47 2.1E-51 282.8 9.1 121 8-129 3-125 (128)
3 2nqb_C Histone H2A; nucleosome 100.0 8E-47 2.7E-51 280.5 9.5 113 17-129 8-121 (123)
4 1tzy_A Histone H2A-IV; histone 100.0 1.3E-46 4.5E-51 281.3 9.4 115 16-130 9-124 (129)
5 2f8n_G Core histone macro-H2A. 100.0 2.2E-46 7.5E-51 277.1 9.4 112 17-128 7-119 (120)
6 2f8n_K Histone H2A type 1; nuc 100.0 3.2E-46 1.1E-50 285.0 9.4 119 12-130 24-143 (149)
7 2jss_A Chimera of histone H2B. 100.0 1.3E-36 4.4E-41 239.6 9.9 97 21-118 95-192 (192)
8 3ksy_A SOS-1, SON of sevenless 99.9 2.9E-26 9.8E-31 215.0 7.1 98 22-121 95-192 (1049)
9 1jfi_A Transcription regulator 99.9 7.1E-24 2.4E-28 151.2 6.6 83 23-105 3-85 (98)
10 1n1j_B NF-YC; histone-like PAI 99.8 2.5E-19 8.6E-24 127.2 8.5 80 26-105 14-93 (97)
11 4g92_C HAPE; transcription fac 99.8 7.8E-19 2.7E-23 129.0 8.2 77 29-105 39-115 (119)
12 2byk_A Chrac-16; nucleosome sl 99.7 1.5E-17 5E-22 125.5 5.7 83 22-104 10-93 (140)
13 1tzy_D Histone H4-VI; histone- 99.6 4.9E-15 1.7E-19 106.1 7.9 76 20-98 20-95 (103)
14 2yfw_B Histone H4, H4; cell cy 99.6 5.3E-15 1.8E-19 106.0 7.2 76 20-98 20-95 (103)
15 1f1e_A Histone fold protein; a 99.2 1.4E-11 4.8E-16 94.2 6.4 71 26-97 77-147 (154)
16 1b67_A Protein (histone HMFA); 98.9 1.8E-09 6.1E-14 71.2 6.6 65 31-96 2-66 (68)
17 1ku5_A HPHA, archaeal histon; 98.8 9.5E-09 3.2E-13 68.2 6.4 65 31-96 6-70 (70)
18 1id3_B Histone H4; nucleosome 98.7 3.8E-08 1.3E-12 70.3 7.8 74 21-97 20-93 (102)
19 1n1j_A NF-YB; histone-like PAI 98.7 6E-08 2.1E-12 67.6 6.8 68 28-95 5-73 (93)
20 2byk_B Chrac-14; nucleosome sl 98.5 9.9E-08 3.4E-12 70.6 5.5 75 29-103 7-82 (128)
21 3b0c_W CENP-W, centromere prot 98.4 7E-07 2.4E-11 60.2 7.1 65 31-95 4-68 (76)
22 2hue_C Histone H4; mini beta s 98.3 4E-06 1.4E-10 57.5 8.1 72 23-97 4-75 (84)
23 1f1e_A Histone fold protein; a 98.0 8.7E-06 3E-10 62.0 6.6 64 31-94 4-67 (154)
24 1taf_B TFIID TBP associated fa 97.9 2.9E-05 9.8E-10 52.0 6.9 65 30-95 5-69 (70)
25 1jfi_B DR1 protein, transcript 97.8 4E-05 1.4E-09 59.7 6.9 77 27-104 11-87 (179)
26 3b0c_T CENP-T, centromere prot 97.6 6.1E-05 2.1E-09 54.3 4.7 71 29-100 5-75 (111)
27 1tzy_B Histone H2B; histone-fo 97.5 0.00025 8.6E-09 52.4 6.1 66 29-95 35-100 (126)
28 3v9r_A MHF1, uncharacterized p 97.3 0.00058 2E-08 47.7 6.6 78 27-106 11-89 (90)
29 1taf_A TFIID TBP associated fa 97.3 0.00082 2.8E-08 44.6 6.9 60 36-96 6-65 (68)
30 2nqb_D Histone H2B; nucleosome 97.3 0.0006 2.1E-08 50.2 6.3 64 31-95 34-97 (123)
31 4dra_A Centromere protein S; D 96.9 0.0013 4.6E-08 47.6 5.4 79 27-106 26-104 (113)
32 3b0b_B CENP-S, centromere prot 96.9 0.0012 4.1E-08 47.4 5.0 79 27-106 18-96 (107)
33 1bh9_B TAFII28; histone fold, 96.8 0.0031 1.1E-07 43.8 6.3 64 31-95 16-80 (89)
34 3vh5_A CENP-S; histone fold, c 96.6 0.0028 9.5E-08 47.5 5.1 79 27-106 18-96 (140)
35 3nqj_A Histone H3-like centrom 96.5 0.006 2.1E-07 41.8 6.0 65 31-95 3-73 (82)
36 2hue_B Histone H3; mini beta s 96.4 0.0088 3E-07 40.5 6.2 66 30-95 2-71 (77)
37 2jss_A Chimera of histone H2B. 96.4 0.0073 2.5E-07 46.9 6.4 61 35-95 7-67 (192)
38 3nqu_A Histone H3-like centrom 96.3 0.0069 2.4E-07 45.3 5.9 69 27-95 57-131 (140)
39 3r45_A Histone H3-like centrom 96.3 0.0052 1.8E-07 46.8 5.2 70 27-96 73-148 (156)
40 2yfv_A Histone H3-like centrom 96.1 0.011 3.9E-07 41.7 5.6 70 26-95 22-98 (100)
41 1tzy_C Histone H3; histone-fol 96.0 0.016 5.3E-07 43.2 6.3 68 28-95 59-130 (136)
42 3b0b_C CENP-X, centromere prot 96.0 0.02 6.7E-07 39.1 6.2 65 29-93 6-72 (81)
43 4dra_E Centromere protein X; D 96.0 0.028 9.5E-07 38.6 6.9 66 28-93 9-76 (84)
44 2ly8_A Budding yeast chaperone 95.7 0.035 1.2E-06 40.6 6.8 50 47-96 62-111 (121)
45 2l5a_A Histone H3-like centrom 95.0 0.035 1.2E-06 44.7 5.4 60 37-97 167-226 (235)
46 1k6k_A ATP-dependent CLP prote 90.1 0.37 1.3E-05 33.9 4.3 40 66-105 6-45 (143)
47 1h3o_B Transcription initiatio 88.3 1.9 6.6E-05 28.8 6.6 66 31-96 5-70 (76)
48 1khy_A CLPB protein; alpha hel 86.4 0.8 2.7E-05 32.2 4.1 40 66-105 10-51 (148)
49 2y1q_A CLPC N-domain, negative 85.7 0.65 2.2E-05 32.8 3.4 40 66-105 10-51 (150)
50 3fes_A ATP-dependent CLP endop 85.6 0.56 1.9E-05 33.5 3.0 40 66-105 12-53 (145)
51 3fh2_A Probable ATP-dependent 85.0 0.99 3.4E-05 32.1 4.1 40 66-105 11-52 (146)
52 1wwi_A Hypothetical protein TT 83.8 2.6 9E-05 31.6 6.0 61 31-92 2-62 (148)
53 3fes_A ATP-dependent CLP endop 82.0 1.2 4.2E-05 31.6 3.5 40 66-105 86-127 (145)
54 3fh2_A Probable ATP-dependent 81.4 1.7 5.7E-05 30.9 4.0 39 67-105 87-127 (146)
55 3zri_A CLPB protein, CLPV; cha 81.2 1.4 4.7E-05 33.0 3.6 49 57-105 17-70 (171)
56 1k6k_A ATP-dependent CLP prote 76.1 2.8 9.7E-05 29.2 3.9 40 66-105 84-125 (143)
57 1khy_A CLPB protein; alpha hel 75.5 4.5 0.00015 28.2 4.8 40 66-105 87-127 (148)
58 3zri_A CLPB protein, CLPV; cha 75.3 3.3 0.00011 30.8 4.2 32 67-98 104-136 (171)
59 2y1q_A CLPC N-domain, negative 70.9 3.2 0.00011 29.1 3.1 33 66-98 84-116 (150)
60 1r4v_A Hypothetical protein AQ 68.2 3.7 0.00013 31.5 3.0 61 31-92 26-86 (171)
61 1r6b_X CLPA protein; AAA+, N-t 66.5 6.2 0.00021 35.0 4.6 40 66-105 6-45 (758)
62 2l5a_A Histone H3-like centrom 56.2 27 0.00091 27.9 6.1 59 48-106 35-110 (235)
63 3pxg_A Negative regulator of g 52.3 9.7 0.00033 32.1 3.2 40 66-105 10-51 (468)
64 2v1u_A Cell division control p 51.1 58 0.002 25.1 7.4 68 29-96 195-275 (387)
65 3pxg_A Negative regulator of g 49.3 12 0.0004 31.6 3.3 33 67-99 85-117 (468)
66 3v9r_B MHF2, uncharacterized p 48.9 61 0.0021 22.1 6.6 48 32-79 2-51 (88)
67 2vxz_A Pyrsv_GP04; viral prote 48.8 39 0.0013 25.6 5.7 46 60-106 71-116 (165)
68 3pxi_A Negative regulator of g 46.3 13 0.00045 33.1 3.2 40 66-105 10-51 (758)
69 3pxi_A Negative regulator of g 39.8 19 0.00066 31.9 3.3 33 67-99 85-117 (758)
70 3fwb_A Cell division control p 39.0 81 0.0028 20.7 7.6 48 67-114 95-148 (161)
71 1qvr_A CLPB protein; coiled co 38.8 22 0.00075 32.2 3.5 40 66-105 10-51 (854)
72 1r6b_X CLPA protein; AAA+, N-t 37.7 27 0.00092 30.9 3.8 34 66-99 84-117 (758)
73 2qby_A CDC6 homolog 1, cell di 36.7 86 0.0029 24.0 6.3 62 35-96 200-271 (386)
74 3kw6_A 26S protease regulatory 36.2 43 0.0015 20.8 3.7 36 57-96 37-72 (78)
75 3uk6_A RUVB-like 2; hexameric 34.2 1.2E+02 0.0041 23.5 6.8 48 49-96 278-329 (368)
76 3n22_A Protein S100-A2; EF-han 26.8 89 0.003 20.4 4.2 52 62-113 6-69 (98)
77 2dzn_B 26S protease regulatory 26.2 93 0.0032 19.5 4.1 45 48-96 23-67 (82)
78 1g8p_A Magnesium-chelatase 38 23.7 86 0.0029 24.0 4.2 47 49-95 267-320 (350)
79 1qvr_A CLPB protein; coiled co 23.3 52 0.0018 29.8 3.2 34 66-99 87-120 (854)
80 3k1j_A LON protease, ATP-depen 23.2 1.7E+02 0.0059 25.1 6.4 29 68-96 346-374 (604)
81 1lv7_A FTSH; alpha/beta domain 22.8 97 0.0033 22.9 4.2 27 69-95 224-250 (257)
82 2r2i_A Guanylyl cyclase-activa 22.5 1.2E+02 0.0042 21.0 4.5 40 67-106 130-169 (198)
83 3nso_A Protein S100-A3; EF-han 21.3 90 0.0031 20.7 3.4 45 62-106 5-61 (101)
84 1top_A Troponin C; contractIle 21.2 1.8E+02 0.0061 18.9 6.4 42 66-107 94-141 (162)
85 1wy1_A Hypothetical protein PH 20.6 1.2E+02 0.004 22.7 4.2 55 57-113 51-109 (172)
86 3h4m_A Proteasome-activating n 20.3 1.2E+02 0.004 22.7 4.2 29 68-96 229-257 (285)
No 1
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=3e-47 Score=285.46 Aligned_cols=121 Identities=69% Similarity=1.087 Sum_probs=106.8
Q ss_pred CCCCCCCCCCCcc-cccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Q 032326 9 GAGGRRGGGERKK-ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINP 87 (143)
Q Consensus 9 ~~~~~~~~~~~~~-~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP 87 (143)
+++|+++ +.+++ +|+|+|+||+|||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|
T Consensus 3 ~~~~~~~-~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp 81 (131)
T 1id3_C 3 GKGGKAG-SAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIP 81 (131)
T ss_dssp --------------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCCCC-CCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcH
Confidence 4455553 33444 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhccHHHHhhhcCceecCCccCCCCCccCCCCCCCCC
Q 032326 88 RHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKTTST 130 (143)
Q Consensus 88 ~hI~~AI~nD~EL~~L~~~~~Ia~ggv~P~~~~~l~~~k~~~~ 130 (143)
+||++||+||+|||+||+++||++|||+|+||++|+++|.+++
T Consensus 82 ~hI~lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (131)
T 1id3_C 82 RHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKA 124 (131)
T ss_dssp HHHHHHHHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSC
T ss_pred HHHHHHHhccHHHHHHhcCceecCCccCCCccHHHcCcccccc
Confidence 9999999999999999999999999999999999999987654
No 2
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=6.2e-47 Score=282.76 Aligned_cols=121 Identities=53% Similarity=0.860 Sum_probs=98.9
Q ss_pred CCCCCCCCCCCCcc-cccccccccccchhhHHHHHhccCccc-ccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 032326 8 KGAGGRRGGGERKK-ISKSVKAGLQFPVGRIARFLKKGRYAQ-RMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRI 85 (143)
Q Consensus 8 ~~~~~~~~~~~~~~-~srs~RagL~FpVsri~r~Lr~~~~~~-rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krI 85 (143)
++++|+++++.+++ +|||+|+||||||+||+|||++++|+. ||+++|+|||+||||||++||||+|+|+|+++++++|
T Consensus 3 ~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krI 82 (128)
T 1f66_C 3 GGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRI 82 (128)
T ss_dssp --------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEE
T ss_pred CCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 45667777776666 899999999999999999999999874 9999999999999999999999999999999999999
Q ss_pred chhhHHHHhhccHHHHhhhcCceecCCccCCCCCccCCCCCCCC
Q 032326 86 NPRHVLLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKTTS 129 (143)
Q Consensus 86 tP~hI~~AI~nD~EL~~L~~~~~Ia~ggv~P~~~~~l~~~k~~~ 129 (143)
+|+||++||+||+|||+||+. ||++|||+|+||++|+++|.++
T Consensus 83 tprhi~lAI~nDeEL~~Ll~~-tia~ggv~P~i~~~l~~k~~~~ 125 (128)
T 1f66_C 83 TPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGQQ 125 (128)
T ss_dssp CHHHHHHHHHHSHHHHHHCCS-EETTCCCCCCCCGGGC------
T ss_pred cHHHHHHHHhccHHHhhhhcc-eecCCccCCCCCHHhcCccccc
Confidence 999999999999999999965 9999999999999999998765
No 3
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=8e-47 Score=280.49 Aligned_cols=113 Identities=73% Similarity=1.108 Sum_probs=104.2
Q ss_pred CCCcc-cccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 17 GERKK-ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 17 ~~~~~-~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
+.+++ .|+|+|+||||||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++||+
T Consensus 8 ~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 8 KVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp -----CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 33444 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhcCceecCCccCCCCCccCCCCCCCC
Q 032326 96 NDDELGKLLQGVTIASGGVLPNINPVLLPKKTTS 129 (143)
Q Consensus 96 nD~EL~~L~~~~~Ia~ggv~P~~~~~l~~~k~~~ 129 (143)
||+|||+||+++||++|||+|+||++|+++|.++
T Consensus 88 nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~ 121 (123)
T 2nqb_C 88 NDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 121 (123)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSSCC---
T ss_pred ccHHHHHHhcCceeCCCCcCCCccHHHcCccccc
Confidence 9999999999999999999999999999998754
No 4
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=1.3e-46 Score=281.32 Aligned_cols=115 Identities=71% Similarity=1.099 Sum_probs=103.9
Q ss_pred CCCCcc-cccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHh
Q 032326 16 GGERKK-ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAV 94 (143)
Q Consensus 16 ~~~~~~-~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI 94 (143)
++.+++ .|+|+|+||||||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++||
T Consensus 9 ~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI 88 (129)
T 1tzy_A 9 GKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAI 88 (129)
T ss_dssp -----CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHH
Confidence 444545 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHhhhcCceecCCccCCCCCccCCCCCCCCC
Q 032326 95 RNDDELGKLLQGVTIASGGVLPNINPVLLPKKTTST 130 (143)
Q Consensus 95 ~nD~EL~~L~~~~~Ia~ggv~P~~~~~l~~~k~~~~ 130 (143)
+||+|||+||+++||++|||+|+||++|+++|.+++
T Consensus 89 ~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (129)
T 1tzy_A 89 RNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 124 (129)
T ss_dssp HTSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred hccHHHHHHhCCCeecCCCcCCCCCHHHcCcccccc
Confidence 999999999999999999999999999999987654
No 5
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=2.2e-46 Score=277.10 Aligned_cols=112 Identities=66% Similarity=1.026 Sum_probs=104.9
Q ss_pred CCCcc-cccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 17 GERKK-ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 17 ~~~~~-~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
+.+++ +|+|+|+||||||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++||+
T Consensus 7 ~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 7 KKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp ---CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 33444 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhhhcCceecCCccCCCCCccCCCCCCC
Q 032326 96 NDDELGKLLQGVTIASGGVLPNINPVLLPKKTT 128 (143)
Q Consensus 96 nD~EL~~L~~~~~Ia~ggv~P~~~~~l~~~k~~ 128 (143)
||+|||+||+++||++|||+|+||++|+++|.+
T Consensus 87 nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 87 NDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred cCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 999999999999999999999999999999753
No 6
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=3.2e-46 Score=285.04 Aligned_cols=119 Identities=69% Similarity=1.105 Sum_probs=103.4
Q ss_pred CCCCCCCCcc-cccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhH
Q 032326 12 GRRGGGERKK-ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHV 90 (143)
Q Consensus 12 ~~~~~~~~~~-~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI 90 (143)
|+++++.+++ +|+|+||||||||+||+|||++++|++||+++|+|||+||||||++||||+|+|+|+++++++|+|+||
T Consensus 24 ~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI 103 (149)
T 2f8n_K 24 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 103 (149)
T ss_dssp ----------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred CCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHH
Confidence 4444555655 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccHHHHhhhcCceecCCccCCCCCccCCCCCCCCC
Q 032326 91 LLAVRNDDELGKLLQGVTIASGGVLPNINPVLLPKKTTST 130 (143)
Q Consensus 91 ~~AI~nD~EL~~L~~~~~Ia~ggv~P~~~~~l~~~k~~~~ 130 (143)
++||+||+|||+||+++||++|||+|+||++|+++|.+++
T Consensus 104 ~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~ 143 (149)
T 2f8n_K 104 QLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESH 143 (149)
T ss_dssp HHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred HHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCcccccc
Confidence 9999999999999999999999999999999999987654
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=1.3e-36 Score=239.61 Aligned_cols=97 Identities=65% Similarity=0.980 Sum_probs=93.6
Q ss_pred ccccccccccccchhhHHHHHhccCcc-cccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHH
Q 032326 21 KISKSVKAGLQFPVGRIARFLKKGRYA-QRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDE 99 (143)
Q Consensus 21 ~~srs~RagL~FpVsri~r~Lr~~~~~-~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~E 99 (143)
.+++|+|+||||||+||+|||++++++ .||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++||+||+|
T Consensus 95 ~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~e 174 (192)
T 2jss_A 95 AQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDE 174 (192)
T ss_dssp SSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHH
T ss_pred cccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHH
Confidence 379999999999999999999999887 6999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceecCCccCCCC
Q 032326 100 LGKLLQGVTIASGGVLPNI 118 (143)
Q Consensus 100 L~~L~~~~~Ia~ggv~P~~ 118 (143)
||+||+ +||++|||+|+|
T Consensus 175 L~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 175 LDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHh-hhhcCCCcCCCC
Confidence 999997 599999999987
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.92 E-value=2.9e-26 Score=215.03 Aligned_cols=98 Identities=23% Similarity=0.412 Sum_probs=81.7
Q ss_pred cccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHH
Q 032326 22 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELG 101 (143)
Q Consensus 22 ~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~ 101 (143)
.++|+||||+|||+||||+| +++|++||+.+||||||||||||++||||||||+|+++++.+|+|+||++||+||+||+
T Consensus 95 ~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~ 173 (1049)
T 3ksy_A 95 EKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVLM 173 (1049)
T ss_dssp TTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHH
T ss_pred hcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHHH
Confidence 69999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCceecCCccCCCCCcc
Q 032326 102 KLLQGVTIASGGVLPNINPV 121 (143)
Q Consensus 102 ~L~~~~~Ia~ggv~P~~~~~ 121 (143)
.||+.. ...+|++|.....
T Consensus 174 ~l~~~d-ee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 174 DMFHQD-VEDINILSLTDEE 192 (1049)
T ss_dssp HHCC----------------
T ss_pred HHHhhc-cccccCCCCcccc
Confidence 999874 4567788875543
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.89 E-value=7.1e-24 Score=151.17 Aligned_cols=83 Identities=16% Similarity=0.304 Sum_probs=62.5
Q ss_pred ccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHh
Q 032326 23 SKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGK 102 (143)
Q Consensus 23 srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~ 102 (143)
+++.+++++|||+||+|+|+.+.+..||+++|+||+++++|||+.||+++|++.|+++++++|+|+||..||++|++|++
T Consensus 3 ~~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 3 SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp -------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred CcccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q 032326 103 LLQ 105 (143)
Q Consensus 103 L~~ 105 (143)
|+.
T Consensus 83 L~d 85 (98)
T 1jfi_A 83 NKA 85 (98)
T ss_dssp ---
T ss_pred HHh
Confidence 994
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.79 E-value=2.5e-19 Score=127.21 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=72.4
Q ss_pred cccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhc
Q 032326 26 VKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQ 105 (143)
Q Consensus 26 ~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 105 (143)
.-.+++||++||+|+|+.+.+..+|+.+|++|+++++|||+.+|++.|++.|..+++++|+++||..||.+|++|++|..
T Consensus 14 ~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp ------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred CcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999984
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.77 E-value=7.8e-19 Score=129.00 Aligned_cols=77 Identities=23% Similarity=0.308 Sum_probs=73.5
Q ss_pred ccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhc
Q 032326 29 GLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQ 105 (143)
Q Consensus 29 gL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 105 (143)
-.+||++||+|+|+.+.+..+|+.+|++|+++++|||+.+|++.|++.|.++++++|+|+||..||.+|++|++|..
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~D 115 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLID 115 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999998763
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.69 E-value=1.5e-17 Score=125.53 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=62.7
Q ss_pred cccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccchhhHHHHhhccHHH
Q 032326 22 ISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAA-RDNKKNRINPRHVLLAVRNDDEL 100 (143)
Q Consensus 22 ~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A-~~~~~krItP~hI~~AI~nD~EL 100 (143)
.+++.+..++||++||+|+|+.+.+..+|+..|+++++.++|||+.+|++.|++.| ...++++|+++||..||.++++|
T Consensus 10 ~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~ 89 (140)
T 2byk_A 10 VERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNL 89 (140)
T ss_dssp -------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTT
T ss_pred CCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchh
Confidence 58888999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred Hhhh
Q 032326 101 GKLL 104 (143)
Q Consensus 101 ~~L~ 104 (143)
++|.
T Consensus 90 dFL~ 93 (140)
T 2byk_A 90 EFLL 93 (140)
T ss_dssp GGGT
T ss_pred hhHh
Confidence 9998
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.58 E-value=4.9e-15 Score=106.08 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=70.9
Q ss_pred cccccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccH
Q 032326 20 KKISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDD 98 (143)
Q Consensus 20 ~~~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~ 98 (143)
++.++++.++ ||+..|+|+++...+ .||+.++..+|+.+|||++.||++.|.+.|+..+++.|+++||.+|+.+..
T Consensus 20 ~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 20 RKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp -CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred ccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 3479999999 999999999999976 799999999999999999999999999999999999999999999999753
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.56 E-value=5.3e-15 Score=106.01 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=63.2
Q ss_pred cccccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccH
Q 032326 20 KKISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDD 98 (143)
Q Consensus 20 ~~~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~ 98 (143)
+++++++.++ ||++.|+|+++...+ .||+.++..+|+.+|||++.||++.|.+.|+..+++.|+++||.+|+.+..
T Consensus 20 ~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 20 RKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp ------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 3478999999 999999999999977 799999999999999999999999999999999999999999999999654
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.22 E-value=1.4e-11 Score=94.15 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=68.0
Q ss_pred cccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhcc
Q 032326 26 VKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRND 97 (143)
Q Consensus 26 ~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD 97 (143)
.+.++.||++.|.|+|++. ...|||.+|.++|..+||||+.+|...|.+.|+..+++.|+++||.+|+.++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4789999999999999999 7889999999999999999999999999999999999999999999999875
No 16
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.95 E-value=1.8e-09 Score=71.16 Aligned_cols=65 Identities=28% Similarity=0.405 Sum_probs=61.3
Q ss_pred ccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 31 QFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
.||.+.|.|+|++. ...||+.+|...|.-++|+++.+|.+-|...|...+++.|+|+||++|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 48999999999999 668999999999999999999999999999999999999999999999863
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.81 E-value=9.5e-09 Score=68.23 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=61.5
Q ss_pred ccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 31 QFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
.||.+.|.|++++. ...|++..+...|..++|+++.+|++-|...|...+++.|+++||++|+++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 58999999999988 468999999999999999999999999999999999999999999999875
No 18
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.73 E-value=3.8e-08 Score=70.25 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=64.5
Q ss_pred ccccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhcc
Q 032326 21 KISKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRND 97 (143)
Q Consensus 21 ~~srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD 97 (143)
|+.+.+..+ +|..-|.|+++... ..||+.++..-|..+|||++.+|+.-|...|+..+++.|+++||.+|+...
T Consensus 20 k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 20 KILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp ----CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 367777777 78888999999985 489999999999999999999999999999999999999999999999854
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.65 E-value=6e-08 Score=67.56 Aligned_cols=68 Identities=16% Similarity=0.321 Sum_probs=62.5
Q ss_pred cccccchhhHHHHHhcc-CcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 28 AGLQFPVGRIARFLKKG-RYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 28 agL~FpVsri~r~Lr~~-~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
..+.||.++|.|+|++. ....||+.+|...|.-+.|.|+.+|.+.|...|...+++.|+++||..|+.
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 35789999999999998 445799999999999999999999999999999999999999999999997
No 20
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.54 E-value=9.9e-08 Score=70.59 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=64.1
Q ss_pred ccccchhhHHHHHhc-cCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhh
Q 032326 29 GLQFPVGRIARFLKK-GRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKL 103 (143)
Q Consensus 29 gL~FpVsri~r~Lr~-~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L 103 (143)
.+.||+++|.|+|++ .....+|+.+|...|+-+.|.|+.+|...|...|...+++.|+++||..|+...+-++++
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 468999999999995 555679999999999999999999999999999999999999999999999976644443
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.43 E-value=7e-07 Score=60.17 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=59.8
Q ss_pred ccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 31 QFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
.||.+.|.|+|++.--..+|+.+|...|.-++|-|+.+|-.-|...|..++++.|+++||..|+.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 58999999999965335699999999999999999999999999999999999999999999986
No 22
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.27 E-value=4e-06 Score=57.52 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=64.6
Q ss_pred ccccccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhcc
Q 032326 23 SKSVKAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRND 97 (143)
Q Consensus 23 srs~RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD 97 (143)
-|.+..+ +|..-|.|+++... ..||+.++..-|..+|||++.+|+.-|...++..+++.|+++||.+|+...
T Consensus 4 ~r~~~~~--ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 4 LRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGGCCS--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred ccccCCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4555556 78888999999885 489999999999999999999999999999999999999999999999864
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.05 E-value=8.7e-06 Score=61.99 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=60.1
Q ss_pred ccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHh
Q 032326 31 QFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAV 94 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI 94 (143)
-+|..-|.|+|++.--..|||.+|...|..++|.|+.+|...|.+.|...+++.|+++||.+|+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 3788899999999933489999999999999999999999999999999999999999999998
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.95 E-value=2.9e-05 Score=52.01 Aligned_cols=65 Identities=8% Similarity=0.112 Sum_probs=61.0
Q ss_pred cccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 30 LQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 30 L~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
-.||+.-|+++.+.-.. .+|+.++...|+--+||-+.||++-|.+.++..+++.++.+||+.|++
T Consensus 5 s~lp~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 46999999999998864 799999999999999999999999999999999999999999999974
No 25
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.83 E-value=4e-05 Score=59.67 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=66.4
Q ss_pred ccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhh
Q 032326 27 KAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLL 104 (143)
Q Consensus 27 RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~ 104 (143)
-..+.||.+.|.|+|++.--..+|+.+|...|.-+++-|+.+|--.|...|...+++.|+++||..|+. +-+|..++
T Consensus 11 ~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred hhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 346789999999999988435799999999999999999999999999999999999999999999998 44444443
No 26
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.62 E-value=6.1e-05 Score=54.26 Aligned_cols=71 Identities=8% Similarity=0.027 Sum_probs=61.0
Q ss_pred ccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHH
Q 032326 29 GLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDEL 100 (143)
Q Consensus 29 gL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL 100 (143)
.+.+|-+-|.|++++. -..|||..+...|.-+++.++.+|..-|...|+..+++.|+++||.+|++....+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 3568999999999998 4579999999999999999999999999999999999999999999999976544
No 27
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.45 E-value=0.00025 Score=52.38 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=59.0
Q ss_pred ccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 29 GLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 29 gL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
.-.|.+ .|+++|+.-.-...|++.|.-.|...++.+...|..-|...++-+++..|++++|+.|++
T Consensus 35 ~esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 35 KESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 345666 799999988655689999999999999999999999999999999999999999999986
No 28
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00058 Score=47.67 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=59.3
Q ss_pred ccccccchhhHHHHH-hccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhc
Q 032326 27 KAGLQFPVGRIARFL-KKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQ 105 (143)
Q Consensus 27 RagL~FpVsri~r~L-r~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 105 (143)
++.|++-|++|=.-. +.+ ...++..+...|+-+++..+.+|.+-+...|+..|++.|++.||.++++.++.|..++.
T Consensus 11 Kaal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~ 88 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVT 88 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhh
Confidence 456777787765433 222 23577777777777777777777777777889999999999999999999999999886
Q ss_pred C
Q 032326 106 G 106 (143)
Q Consensus 106 ~ 106 (143)
+
T Consensus 89 ~ 89 (90)
T 3v9r_A 89 Q 89 (90)
T ss_dssp C
T ss_pred c
Confidence 4
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.33 E-value=0.00082 Score=44.60 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=55.6
Q ss_pred hHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 36 RIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 36 ri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
-|+++|++.. ..+++..++.-|.-.+|-.+.+|+.-|...|...|++.|+.+||++||..
T Consensus 6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 4789999885 47999999999999999999999999999999999999999999999975
No 30
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.27 E-value=0.0006 Score=50.15 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=57.2
Q ss_pred ccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 31 QFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
.|. ..|+++|+.-.-...|++.|...|...++.+...|..-|...++-+++..|++++|+.||+
T Consensus 34 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 34 SYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred hHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 455 4789999987655689999999999999999999999999999999999999999999986
No 31
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.95 E-value=0.0013 Score=47.65 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=63.0
Q ss_pred ccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhcC
Q 032326 27 KAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQG 106 (143)
Q Consensus 27 RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~~ 106 (143)
++.|.+.|+||=+-.-..+ ...++..+...|+-+++..+.+|..-+...|+-.|++.|++.||.++++.++.|..+++.
T Consensus 26 Kaal~y~V~rIvke~gaer-~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~ 104 (113)
T 4dra_A 26 KAAVHYTVGCLCEEVALDK-EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITD 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 4667888887765332221 124888888888888888888888888888999999999999999999999999888764
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=96.93 E-value=0.0012 Score=47.36 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=63.6
Q ss_pred ccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhcC
Q 032326 27 KAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQG 106 (143)
Q Consensus 27 RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~~ 106 (143)
++.|+|-|+||=+---.. ...+++..+...|+-+++..+.+|..-+...|+-.|++.|+++||.++++.++.|...++.
T Consensus 18 Kaal~~~V~rI~~~~g~~-~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~~ 96 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAED-KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh-cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHHH
Confidence 566778887776533221 1248899999989988888888898888889999999999999999999999999877653
No 33
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.83 E-value=0.0031 Score=43.77 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=54.0
Q ss_pred ccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchhhHHHHhh
Q 032326 31 QFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNK-KNRINPRHVLLAVR 95 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~-~krItP~hI~~AI~ 95 (143)
.||=..|+|+++.- ....++....+.|+++--.|+.||+|.|.......+ ...|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 36667799998766 467899999999999999999999999998776654 56899999999875
No 34
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.62 E-value=0.0028 Score=47.54 Aligned_cols=79 Identities=16% Similarity=0.182 Sum_probs=63.7
Q ss_pred ccccccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhcC
Q 032326 27 KAGLQFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQG 106 (143)
Q Consensus 27 RagL~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~~ 106 (143)
++.|+|-|++|=.=.-.. ....|+..+...|+-+++..+.+|..-+...|+..|++.|++.||.++++.++.|..++..
T Consensus 18 KaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 566788888776533221 1236888888888888888888888888888999999999999999999999999998874
No 35
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.54 E-value=0.006 Score=41.81 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=53.9
Q ss_pred ccchhhHHHHHhccC------cccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 31 QFPVGRIARFLKKGR------YAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~------~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
-+|..=|.|++++-. ...|++++|...|--+.|...-++.|-+..-|...++..|.|+||++|.+
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 345555666666543 35699999999999999999999999998888888999999999999865
No 36
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=96.43 E-value=0.0088 Score=40.51 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=54.0
Q ss_pred cccchhhHHHHHhcc----CcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 30 LQFPVGRIARFLKKG----RYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 30 L~FpVsri~r~Lr~~----~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
|-+|..=|.|++++- ....|++++|...|--+.|...-++.|-+..-|...++..|.|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 345555566666544 224699999999999999999999999998888889999999999999975
No 37
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.37 E-value=0.0073 Score=46.90 Aligned_cols=61 Identities=21% Similarity=0.231 Sum_probs=54.3
Q ss_pred hhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 35 GRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 35 sri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
..|++.|+...-...|+..|..+|...++.++..|...|...+..++++.||+++|+.|++
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3689999988655689999999999999999999999998888889999999999999996
No 38
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.34 E-value=0.0069 Score=45.35 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=58.7
Q ss_pred ccccccchhhHHHHHhccC------cccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 27 KAGLQFPVGRIARFLKKGR------YAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 27 RagL~FpVsri~r~Lr~~~------~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
-.+|.+|..-|.|++++-. ...|+..+|...|--+.|.++.+++|-+..-|...++..|+|+||++|.+
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 3567788888888887654 35699999999999999999999999998888888999999999999975
No 39
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.33 E-value=0.0052 Score=46.77 Aligned_cols=70 Identities=16% Similarity=0.063 Sum_probs=59.3
Q ss_pred ccccccchhhHHHHHhccC------cccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 27 KAGLQFPVGRIARFLKKGR------YAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 27 RagL~FpVsri~r~Lr~~~------~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
-.+|.+|..-|.|++++-. ...|+..+|...|--+.|.++.+|+|-|...|.-.++..|+|+||++|.+=
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 3567888888888888644 246999999999999999999999999988888889999999999999763
No 40
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.08 E-value=0.011 Score=41.74 Aligned_cols=70 Identities=23% Similarity=0.131 Sum_probs=55.7
Q ss_pred cccccccchhhHHHHHhccCc-------ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 26 VKAGLQFPVGRIARFLKKGRY-------AQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 26 ~RagL~FpVsri~r~Lr~~~~-------~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
.-.+|-+|..-|.|++++-.. ..|++++|...|--+.|..+-+++|-+..-|...++..|.|+||++|.+
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 335788888888888776541 4699999999999999999999999998888889999999999999864
No 41
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=96.02 E-value=0.016 Score=43.18 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=58.3
Q ss_pred cccccchhhHHHHHhccC----cccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 28 AGLQFPVGRIARFLKKGR----YAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 28 agL~FpVsri~r~Lr~~~----~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
.+|.+|..-|.|++++-. ...|+.++|...|--+.|..+-+++|-+..-|...++..|.|+||++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 466788888888877651 23699999999999999999999999998888888999999999999975
No 42
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=95.98 E-value=0.02 Score=39.10 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=56.1
Q ss_pred ccccchhhHHHHHhccCc--ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHH
Q 032326 29 GLQFPVGRIARFLKKGRY--AQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLA 93 (143)
Q Consensus 29 gL~FpVsri~r~Lr~~~~--~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~A 93 (143)
.-.||..-|.++|+..-- .-||+.+|...++..|+.|+.|.+.+|..+|...+...|..+||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 457999999999997422 23999999999999999999999999999998888889999999874
No 43
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=95.96 E-value=0.028 Score=38.65 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=55.9
Q ss_pred cccccchhhHHHHHhccCc--ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHH
Q 032326 28 AGLQFPVGRIARFLKKGRY--AQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLA 93 (143)
Q Consensus 28 agL~FpVsri~r~Lr~~~~--~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~A 93 (143)
++..||..-|.|+|+..-- .-||+.+|...++..|+.|+.|.+-+|...|...+...|..+||+..
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 4667999999999994432 23999999999999999999999999999888878888999999874
No 44
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.035 Score=40.56 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=47.0
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 47 AQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 47 ~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
..|||.++-.-+..+||.+..+|+.-|...+...+++.|+..||.+|++.
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr 111 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 111 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 46999999999999999999999999999999999999999999999863
No 45
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.035 Score=44.71 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=53.8
Q ss_pred HHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhcc
Q 032326 37 IARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRND 97 (143)
Q Consensus 37 i~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD 97 (143)
+.|+.+.+. +.|||..+-.-+..+||.+..+|+.-|...|...+++.|++.||.+|+..-
T Consensus 167 ~~RlaRrgG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 167 DEEDGDKGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CCTTSCCTT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred HHHHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 447777775 489999999999999999999999999999999999999999999998743
No 46
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=90.08 E-value=0.37 Score=33.90 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 105 (143)
+.++|+.|-+.|...+...|+|+||-+++-.|++...+++
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 4678999999999999999999999999998887766665
No 47
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=88.33 E-value=1.9 Score=28.76 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=57.7
Q ss_pred ccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 31 QFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
.++-.++..++++-.-...+...+--.|.-+-+-|+..+++.|...|+..+...+.++|+++....
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 356678888888776667889999999999999999999999999999999999999999987654
No 48
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=86.41 E-value=0.8 Score=32.21 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccH--HHHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDD--ELGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~--EL~~L~~ 105 (143)
+.++|+.|-..|...+...|+|+||-+++-.++ ....++.
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLT 51 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHH
Confidence 357899999999999999999999999998765 3344443
No 49
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=85.74 E-value=0.65 Score=32.82 Aligned_cols=40 Identities=38% Similarity=0.456 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccHH--HHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDDE--LGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~E--L~~L~~ 105 (143)
+.++|+.|-+.|...+...|+|+||-+++-.+++ ...++.
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 3578999999999999999999999999976654 455554
No 50
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=85.58 E-value=0.56 Score=33.50 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccH--HHHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDD--ELGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~--EL~~L~~ 105 (143)
+.++|+.|.+.|...+...|+|+||-+|+-.++ ....++.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 367899999999999999999999999998764 3455554
No 51
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=84.97 E-value=0.99 Score=32.12 Aligned_cols=40 Identities=33% Similarity=0.404 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhcc--HHHHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRND--DELGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD--~EL~~L~~ 105 (143)
+.++|+.|.+.|...+...|+|+||-+|+-.| .....++.
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 36789999999999999999999999999865 44555654
No 52
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=83.79 E-value=2.6 Score=31.58 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=51.9
Q ss_pred ccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHH
Q 032326 31 QFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLL 92 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~ 92 (143)
.+++.+++++++.. ..--|..+-.-=+..++|--+.++|+.|-..|+.|++--|.|.||-+
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI 62 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI 62 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 47889999999987 34577777777788889999999999999999999999999999743
No 53
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=81.97 E-value=1.2 Score=31.64 Aligned_cols=40 Identities=38% Similarity=0.566 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccHH--HHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDDE--LGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~E--L~~L~~ 105 (143)
+.++|+.|...|...+...|+++||-+|+-.|.+ ...+|+
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 3567899999999999999999999999986653 555554
No 54
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=81.36 E-value=1.7 Score=30.90 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCcccchhhHHHHhhccH--HHHhhhc
Q 032326 67 AEVLELAGNAARDNKKNRINPRHVLLAVRNDD--ELGKLLQ 105 (143)
Q Consensus 67 aEILElAgn~A~~~~~krItP~hI~~AI~nD~--EL~~L~~ 105 (143)
.++|+.|...|...+...|+++||-+|+-.|+ ....+|+
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 57889999999999999999999999998654 4556665
No 55
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=81.15 E-value=1.4 Score=33.00 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHhcCCcccchhhHHHHhhccH--HHHhhhc
Q 032326 57 YMAAVLEYLA---AEVLELAGNAARDNKKNRINPRHVLLAVRNDD--ELGKLLQ 105 (143)
Q Consensus 57 yLaAvLEYL~---aEILElAgn~A~~~~~krItP~hI~~AI~nD~--EL~~L~~ 105 (143)
.+..+++-|+ .++|+.|.+.|...+...|+|+||-+|+-.|+ ....++.
T Consensus 17 ~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 17 ELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp CHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred hHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 3566666654 46899999999999999999999999998764 3555554
No 56
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=76.10 E-value=2.8 Score=29.16 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccHH--HHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDDE--LGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~E--L~~L~~ 105 (143)
+.++|+.|..+|...+...|+++||-+|+-.|.+ ...++.
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 3578999999999999999999999999987653 344444
No 57
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=75.54 E-value=4.5 Score=28.18 Aligned_cols=40 Identities=25% Similarity=0.338 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhc-cHHHHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRN-DDELGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~n-D~EL~~L~~ 105 (143)
+..+|+.|...|...+...|+++||-+|+-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 4568899999999989999999999999984 444455554
No 58
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=75.28 E-value=3.3 Score=30.85 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH-hcCCcccchhhHHHHhhccH
Q 032326 67 AEVLELAGNAAR-DNKKNRINPRHVLLAVRNDD 98 (143)
Q Consensus 67 aEILElAgn~A~-~~~~krItP~hI~~AI~nD~ 98 (143)
.++|+.|..+|. ..+...|+++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 467999999999 89999999999999999887
No 59
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=70.87 E-value=3.2 Score=29.09 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccH
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDD 98 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~ 98 (143)
+.++|+.|..+|...+...|+++||-+|+-.|.
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 456889999999999999999999999998654
No 60
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=68.21 E-value=3.7 Score=31.47 Aligned_cols=61 Identities=8% Similarity=0.062 Sum_probs=52.0
Q ss_pred ccchhhHHHHHhccCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHH
Q 032326 31 QFPVGRIARFLKKGRYAQRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLL 92 (143)
Q Consensus 31 ~FpVsri~r~Lr~~~~~~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~ 92 (143)
.+++.+++++++.. ..--|..+-.-=+..+++--+.++|+.|-..|+.|++--|.|.||-+
T Consensus 26 vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPI 86 (171)
T 1r4v_A 26 PKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNI 86 (171)
T ss_dssp CTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCC
T ss_pred cCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 78999999999987 34467777777788888888999999999999999999999999743
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.45 E-value=6.2 Score=35.00 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~ 105 (143)
+.++|+.|-+.|...+...|+|+||-+++-.|.+...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4678999999999999999999999999998888777765
No 62
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=56.19 E-value=27 Score=27.90 Aligned_cols=59 Identities=22% Similarity=0.166 Sum_probs=47.3
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHH-----------------hhccHHHHhhhcC
Q 032326 48 QRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLA-----------------VRNDDELGKLLQG 106 (143)
Q Consensus 48 ~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~A-----------------I~nD~EL~~L~~~ 106 (143)
.|..++|...|--+-|..+-.++|-+.--|.-.++-.|.|.||++| -.+|.-|.+.|.+
T Consensus 35 lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~~~p~evme~~~~~~~~~k~~~~~ 110 (235)
T 2l5a_A 35 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFLVPRGSMERHKLADENMRKVWSN 110 (235)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSCCCCSSSCHHHHHHHHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 4888888888888888888889999877777778889999999998 3567777666653
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=52.28 E-value=9.7 Score=32.11 Aligned_cols=40 Identities=35% Similarity=0.404 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhcc--HHHHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRND--DELGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD--~EL~~L~~ 105 (143)
+.++|+.|-..|...+...|+|+||-+++-.+ .....++.
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~ 51 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHH
Confidence 46789999999999999999999999999765 34555554
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=51.11 E-value=58 Score=25.12 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=46.0
Q ss_pred ccccc---hhhHHHHHhcc----CcccccCCChhHHHHHHHH------HHHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 29 GLQFP---VGRIARFLKKG----RYAQRMGSGAPIYMAAVLE------YLAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 29 gL~Fp---Vsri~r~Lr~~----~~~~rIs~~A~VyLaAvLE------YL~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
.+.|| ...+..+++.. .....++..+.-+++.... ..+..+++.++..|...+...|+.+|++.++.
T Consensus 195 ~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 195 ELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp ECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 34555 34555555432 1123577777777777666 45567888888888777888999999998875
Q ss_pred c
Q 032326 96 N 96 (143)
Q Consensus 96 n 96 (143)
.
T Consensus 275 ~ 275 (387)
T 2v1u_A 275 E 275 (387)
T ss_dssp H
T ss_pred H
Confidence 3
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.29 E-value=12 Score=31.56 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCcccchhhHHHHhhccHH
Q 032326 67 AEVLELAGNAARDNKKNRINPRHVLLAVRNDDE 99 (143)
Q Consensus 67 aEILElAgn~A~~~~~krItP~hI~~AI~nD~E 99 (143)
.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 85 ~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 85 KKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 567899999999999999999999999987654
No 66
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=48.90 E-value=61 Score=22.10 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=37.5
Q ss_pred cchhhHHHHHhccCcc--cccCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032326 32 FPVGRIARFLKKGRYA--QRMGSGAPIYMAAVLEYLAAEVLELAGNAARD 79 (143)
Q Consensus 32 FpVsri~r~Lr~~~~~--~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~ 79 (143)
+|..-+.|+|+...-. -||+.+|...++.-++-|+.|-+-+|.....+
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888844322 29999999999999999999999999654433
No 67
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=48.83 E-value=39 Score=25.56 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhcC
Q 032326 60 AVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQG 106 (143)
Q Consensus 60 AvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~~ 106 (143)
+.+. .+.++++--...-+..|.+-|+|.++..-|..|.|-..+|..
T Consensus 71 ~y~~-kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~ 116 (165)
T 2vxz_A 71 QYRQ-LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSS 116 (165)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHH
Confidence 4444 667777766666677899999999999999999999999975
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=46.28 E-value=13 Score=33.07 Aligned_cols=40 Identities=35% Similarity=0.404 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhcc--HHHHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRND--DELGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD--~EL~~L~~ 105 (143)
+.++|+.|-+.|...+...|+|+||-+|+-.+ .....++.
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHH
Confidence 35789999999999999999999999999765 34445554
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.82 E-value=19 Score=31.95 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCcccchhhHHHHhhccHH
Q 032326 67 AEVLELAGNAARDNKKNRINPRHVLLAVRNDDE 99 (143)
Q Consensus 67 aEILElAgn~A~~~~~krItP~hI~~AI~nD~E 99 (143)
.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 85 ~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 85 KKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 567899999999999999999999999987654
No 70
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=38.97 E-value=81 Score=20.72 Aligned_cols=48 Identities=15% Similarity=0.287 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCcccchhhHHHHhh------ccHHHHhhhcCceecCCcc
Q 032326 67 AEVLELAGNAARDNKKNRINPRHVLLAVR------NDDELGKLLQGVTIASGGV 114 (143)
Q Consensus 67 aEILElAgn~A~~~~~krItP~hI~~AI~------nD~EL~~L~~~~~Ia~ggv 114 (143)
.+-+..+.+....++...|+...+..++. .++++..+|........|.
T Consensus 95 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~ 148 (161)
T 3fwb_A 95 LDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGE 148 (161)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSS
T ss_pred HHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc
Confidence 34455555555556777899999999886 6778888887644444443
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=38.84 E-value=22 Score=32.24 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccHH--HHhhhc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDDE--LGKLLQ 105 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~E--L~~L~~ 105 (143)
+.++|+.|.+.|...+...|+|+||-+++-.+++ +..++.
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~ 51 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLE 51 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHH
Confidence 3578999999999999999999999999976643 344443
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=37.70 E-value=27 Score=30.86 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccHH
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDDE 99 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~E 99 (143)
+.++|+.|..+|...+...|.++||-+|+-.+.+
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4568999999999989999999999999987654
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.74 E-value=86 Score=24.02 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=39.2
Q ss_pred hhHHHHHhc----cCcccccCCChhHHHHHHHH------HHHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 35 GRIARFLKK----GRYAQRMGSGAPIYMAAVLE------YLAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 35 sri~r~Lr~----~~~~~rIs~~A~VyLaAvLE------YL~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
..+..+|+. ......++..+.-+++.... +...++++.++..|...+...|+..|++.++..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 445555553 11113456666666666554 233457777777777777888999999988764
No 74
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=36.22 E-value=43 Score=20.83 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 57 YMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 57 yLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
|-.|=|+.|+.|-.. .|...+...|+.+|+..|+..
T Consensus 37 ~SGADi~~l~~eA~~----~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 37 ASGAEVKGVCTEAGM----YALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp CCHHHHHHHHHHHHH----HHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----HHHHhCCCCCCHHHHHHHHHH
Confidence 444445544444333 333446778999999999863
No 75
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=34.19 E-value=1.2e+02 Score=23.47 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=34.1
Q ss_pred ccCCChhHHHHHHHH-H---HHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 49 RMGSGAPIYMAAVLE-Y---LAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 49 rIs~~A~VyLaAvLE-Y---L~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
.++..+.-+|+..-+ . -+..+++.|...|...+...|+..|++.++..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 466667667766655 2 22346677777777778889999999999864
No 76
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=26.77 E-value=89 Score=20.39 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-ccchhhHHHHhhc-----------cHHHHhhhcCceecCCc
Q 032326 62 LEYLAAEVLELAGNAARDNKKN-RINPRHVLLAVRN-----------DDELGKLLQGVTIASGG 113 (143)
Q Consensus 62 LEYL~aEILElAgn~A~~~~~k-rItP~hI~~AI~n-----------D~EL~~L~~~~~Ia~gg 113 (143)
||.-+.+|.+.=-......|.. .|+...|...+.. +++++.+++.+-.-.-|
T Consensus 6 le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG 69 (98)
T 3n22_A 6 LEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQ 69 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSS
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCC
Confidence 4555556655444444334554 8999999988864 67888888753333333
No 77
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=26.23 E-value=93 Score=19.52 Aligned_cols=45 Identities=13% Similarity=-0.048 Sum_probs=31.9
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 48 QRMGSGAPIYMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 48 ~rIs~~A~VyLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
..|...+.=|-.|=|+.|+.|-...|. ..+...|+.+|+..|+..
T Consensus 23 ~~lA~~t~G~SGADi~~l~~eAa~~ai----~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 23 DSLIIRNDSLSGAVIAAIMQEAGLRAV----RKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp TTTTTSSCCCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH----HhccCCcCHHHHHHHHHH
Confidence 456666667788888888776554443 335668999999988764
No 78
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=23.66 E-value=86 Score=24.02 Aligned_cols=47 Identities=15% Similarity=-0.033 Sum_probs=31.5
Q ss_pred ccCCChhHHHHHHHHH-------HHHHHHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 49 RMGSGAPIYMAAVLEY-------LAAEVLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 49 rIs~~A~VyLaAvLEY-------L~aEILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
.++..+.-||+....- -+..++++|...|...++..|+++|+..++.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 4555555555544332 1235777777777777888899999988765
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=23.29 E-value=52 Score=29.77 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhhccHH
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVRNDDE 99 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~nD~E 99 (143)
+..+|+.|..+|...+...|.++||-+|+-.+.+
T Consensus 87 ~~~vL~~A~~~a~~~g~~~I~~ehlLlall~~~~ 120 (854)
T 1qvr_A 87 LSGALNRAEGLMEELKDRYVAVDTLVLALAEATP 120 (854)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCcEeeHHHHHHHHHhccc
Confidence 4568899999999989999999999999986653
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=23.17 E-value=1.7e+02 Score=25.13 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 68 EVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 68 EILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
.+++.|...|...++..|+++|++.|+..
T Consensus 346 ~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 346 GIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 57778877888888889999999999964
No 81
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=22.80 E-value=97 Score=22.89 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCcccchhhHHHHhh
Q 032326 69 VLELAGNAARDNKKNRINPRHVLLAVR 95 (143)
Q Consensus 69 ILElAgn~A~~~~~krItP~hI~~AI~ 95 (143)
+++.|...|...+...|+.+|++.|+.
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 334444445556677899999998875
No 82
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=22.52 E-value=1.2e+02 Score=21.02 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCcccchhhHHHHhhccHHHHhhhcC
Q 032326 67 AEVLELAGNAARDNKKNRINPRHVLLAVRNDDELGKLLQG 106 (143)
Q Consensus 67 aEILElAgn~A~~~~~krItP~hI~~AI~nD~EL~~L~~~ 106 (143)
.+.++........++...|+...+...+.+++++..++..
T Consensus 130 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~ 169 (198)
T 2r2i_A 130 EEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTR 169 (198)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHTTCHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCHHHHHHHhc
Confidence 3455556566666777899999999999999999999973
No 83
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A
Probab=21.34 E-value=90 Score=20.70 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-cccchhhHHHHhhc-----------cHHHHhhhcC
Q 032326 62 LEYLAAEVLELAGNAARDNKK-NRINPRHVLLAVRN-----------DDELGKLLQG 106 (143)
Q Consensus 62 LEYL~aEILElAgn~A~~~~~-krItP~hI~~AI~n-----------D~EL~~L~~~ 106 (143)
||.=+.+|.+.=-.....+|. ..|+...|...+.+ ++|++.+++.
T Consensus 5 le~~i~~l~~aF~~fd~~dg~~G~Is~~EL~~~l~~~l~~~lg~~~~~~ev~~~i~~ 61 (101)
T 3nso_A 5 LEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSV 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCTTEECHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEECHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHH
Confidence 555566666654445433443 68999999998864 6788888864
No 84
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=21.17 E-value=1.8e+02 Score=18.94 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCcccchhhHHHHhh------ccHHHHhhhcCc
Q 032326 66 AAEVLELAGNAARDNKKNRINPRHVLLAVR------NDDELGKLLQGV 107 (143)
Q Consensus 66 ~aEILElAgn~A~~~~~krItP~hI~~AI~------nD~EL~~L~~~~ 107 (143)
..+.+..+.+....++...|+...+..++. .++++..+|...
T Consensus 94 ~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~g~~~~~~~~~~~~~~~ 141 (162)
T 1top_A 94 SEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDS 141 (162)
T ss_dssp HHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 344455565655556777899999998874 457777777643
No 85
>1wy1_A Hypothetical protein PH0671; structural genomics, riken structural genomics/proteomics in RSGI, transferase; 1.80A {Pyrococcus horikoshii}
Probab=20.63 E-value=1.2e+02 Score=22.66 Aligned_cols=55 Identities=15% Similarity=0.322 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHH---HHhh-ccHHHHhhhcCceecCCc
Q 032326 57 YMAAVLEYLAAEVLELAGNAARDNKKNRINPRHVL---LAVR-NDDELGKLLQGVTIASGG 113 (143)
Q Consensus 57 yLaAvLEYL~aEILElAgn~A~~~~~krItP~hI~---~AI~-nD~EL~~L~~~~~Ia~gg 113 (143)
-+..+|+.+-.++.++.+..|......+|++.+++ ..|. .+++|. ++.+++++|+
T Consensus 51 ~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~lp--l~~FILPgg~ 109 (172)
T 1wy1_A 51 EMKGILEEIQNDIYKIMGEIGSKGKIEGISEERIKWLEGLISRYEEMVN--LKSFVLPGGT 109 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCCCCHHHHHHHHHHHHHHHTTCS--CCSSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHhhhCC--CcCeEECCCC
Confidence 47788899989999999888865434568888876 3333 444444 4444556554
No 86
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=20.25 E-value=1.2e+02 Score=22.66 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCcccchhhHHHHhhc
Q 032326 68 EVLELAGNAARDNKKNRINPRHVLLAVRN 96 (143)
Q Consensus 68 EILElAgn~A~~~~~krItP~hI~~AI~n 96 (143)
.++..|...|...+...|+.+|++.|+..
T Consensus 229 ~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 229 AICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 34555555566667788999999999864
Done!