BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032327
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 189
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 1 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPE--EISKLAKVKA 58
+FL VK F + YG +A TA +N EF L +++ H E + K+ + +A
Sbjct: 77 FSFLNEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKH---HSENKSLDKVMETQA 132
Query: 59 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNM 114
QV E+KG+M+ NI+ V RGE++ELL+DKTENL + F++T + R M ++N+
Sbjct: 133 QVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNI 188
>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex
Length = 74
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWL 111
K+ V+ QV EV VM ENI KV++RGE+++ L DK+E+L A F + ++RR+MW
Sbjct: 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 68
Query: 112 Q 112
+
Sbjct: 69 R 69
>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|E Chain E, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|I Chain I, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 61
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 40/60 (66%)
Query: 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 110
S+ A+++A++ + G+M +NI KV +RGE++ + DK +NL AQ F+ ++R+ MW
Sbjct: 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61
>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure
Length = 119
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWL 111
+L + +AQV EV +M N++KVL+R +K+ L D+ + L A F ++ K++RK W
Sbjct: 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 93
Query: 112 QNM 114
+N+
Sbjct: 94 KNL 96
>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 91
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWL 111
+L + +AQV EV +M N++KVL+R +K+ L D+ + L A F ++ K++RK W
Sbjct: 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 65
Query: 112 QNM 114
+N+
Sbjct: 66 KNL 68
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWL 111
+L + +AQV EV +M N++KVL+R +K+ L D+ + L A F ++ K++RK W
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 112 QNM 114
+N+
Sbjct: 91 KNL 93
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWL 111
+L + +AQV EV +M N++KVL+R +K+ L D+ + L A F ++ K++RK W
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 64
Query: 112 QN 113
+N
Sbjct: 65 KN 66
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 80
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWL 111
+L + +AQV EV +M N++KVL+R KI L D+ + L A F ++ K++RK W
Sbjct: 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWW 75
Query: 112 QN 113
+N
Sbjct: 76 KN 77
>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 63
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 110
+L + +AQV EV +M N++KVL+R +K+ L D+ + L A F ++ K++RK W
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
Activity Of Longin Domain Snare Ykt6
Length = 199
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 1 MAFLERVKDEFVSK-----YGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAK 55
LE+V DEF + + G AT L+ L +Y +P E ++K
Sbjct: 92 FTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGH-------LSRY--QNPREADPMSK 142
Query: 56 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTK 104
V+A++ E K ++ +E +L+RGEK++ LV K+E L Q++ F T K
Sbjct: 143 VQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARK 191
>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 39/56 (69%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 107
++ ++++V VK +M +N+E++L RGE ++ L +KTE+L ++ F++T K+ R
Sbjct: 10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 196
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 1 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQV 60
A+LE + EF ++G K T EF +++ + +D L + ++
Sbjct: 86 FAYLEDLHSEFDEQHGK-KVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTEL 143
Query: 61 SEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFR 99
+V+ +M+ NIE+VL RGE + L K NL ++ +R
Sbjct: 144 QDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYR 182
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
pdb|1ITQ|B Chain B, Human Renal Dipeptidase
pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
Length = 369
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 19 KAATAPANGLNKEFG--PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 76
+ A A A G +F P++ E ++ +P+ I++L + +EVKG + +N+ +V +
Sbjct: 276 EVAGARAVGFGGDFDGVPRVPEGLEDVSKYPDLIAELLRRNWTEAEVKGALADNLLRVFE 335
Query: 77 RGEKIELLVDKTE 89
E+ L E
Sbjct: 336 AVEQASNLTQAPE 348
>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin-
Like Protein 1
Length = 131
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 3 FLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEE 49
FL +K F + YG +A TAP +N EF L +++ P
Sbjct: 85 FLNEIKKRFQTTYGS-RAQTAPPYAMNSEFSSVLAAQLKHHSSGPSS 130
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 50 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 81
+ ++ ++++V VK +M +N+E++L RGE +
Sbjct: 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310
>pdb|3RK2|A Chain A, Truncated Snare Complex
pdb|3RK2|E Chain E, Truncated Snare Complex
pdb|3RK3|A Chain A, Truncated Snare Complex With Complexin
pdb|3RL0|A Chain A, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|E Chain E, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|I Chain I, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|M Chain M, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Q Chain Q, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|U Chain U, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Y Chain Y, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|CC Chain c, Truncated Snare Complex With Complexin (P1)
Length = 37
Score = 29.3 bits (64), Expect = 0.86, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKI 81
+L + +AQV EV +M N++KVL+R +K+
Sbjct: 8 RLQQTQAQVDEVVDIMRVNVDKVLERDQKL 37
>pdb|3FIE|C Chain C, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
pdb|3FIE|D Chain D, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
Length = 38
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDR 77
+L + +AQV EV +M N++KVL+R
Sbjct: 10 RLQQTQAQVDEVVDIMRVNVDKVLER 35
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 5 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVK 64
+RV D F Y GG A A G ++ G + ++ +E +KL V+ + +
Sbjct: 219 DRVLDVFT--YTGGFAIHAAIAGADEVIGI---DKSPRAIETAKENAKLNGVEDRXKFIV 273
Query: 65 GVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 100
G E EK+ +GEK +++V Q +D ++
Sbjct: 274 GSAFEEXEKLQKKGEKFDIVVLDPPAFVQHEKDLKA 309
>pdb|3FII|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh2)
Length = 33
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 52 KLAKVKAQVSEVKGVMMENIEKVLDR 77
+L + +AQV EV +M N++KVL+R
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLER 30
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 11 FVSKYGGGKAATAPANGLNKEFGPKLKE-------------LMQYCV-DHPEEISKLAKV 56
V Y + A A G N F KL++ L + C DHPE + K
Sbjct: 213 LVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPE-VLKFPDE 271
Query: 57 KAQVSEVKGVMMENIEKVLDRGEK 80
A V + V EN++K LD+ +K
Sbjct: 272 LAHVEKASRVSAENLQKSLDQMKK 295
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 11 FVSKYGGGKAATAPANGLNKEFGPKLKE-------------LMQYCV-DHPEEISKLAKV 56
V Y + A A G N F KL++ L + C DHPE + K
Sbjct: 142 LVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPE-VLKFPDE 200
Query: 57 KAQVSEVKGVMMENIEKVLDRGEK 80
A V + V EN++K LD+ +K
Sbjct: 201 LAHVEKASRVSAENLQKSLDQMKK 224
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 11 FVSKYGGGKAATAPANGLNKEFGPKLKE-------------LMQYCV-DHPEEISKLAKV 56
V Y + A A G N F KL++ L + C DHPE + K
Sbjct: 232 LVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPE-VLKFPDE 290
Query: 57 KAQVSEVKGVMMENIEKVLDRGEK 80
A V + V EN++K LD+ +K
Sbjct: 291 LAHVEKASRVSAENLQKSLDQMKK 314
>pdb|1M4B|A Chain A, Crystal Structure Of Human Interleukin-2 K43c Covalently
Modified At C43 With 2-[2-(2-Cyclohexyl-2-Guanidino-
Acetylamino)-Acetylamino]-N-(3-Mercapto-Propyl)-
Propionamide
Length = 133
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 26 NGLNKEFGPKLKELMQYCVDHPEEISKL 53
NG+N PKL ++ +C P++ ++L
Sbjct: 26 NGINNYKNPKLTRMLTFCFYMPKKATEL 53
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 25.8 bits (55), Expect = 8.7, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 9 DEFVSKYGGGKAATA--PANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGV 66
D+F Y GG +TA P + ++ F LKE++ D E+S+LAK ++ GV
Sbjct: 128 DDFF--YVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGV 185
Query: 67 MMENIEKV 74
+ E V
Sbjct: 186 VAFKCENV 193
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 25.8 bits (55), Expect = 8.9, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 9 DEFVSKYGGGKAATA--PANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGV 66
D+F Y GG +TA P + ++ F LKE++ D E+S+LAK ++ GV
Sbjct: 353 DDFF--YVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGV 410
Query: 67 MMENIEKV 74
+ E V
Sbjct: 411 VAFKCENV 418
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 25.8 bits (55), Expect = 9.1, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 9 DEFVSKYGGGKAATA--PANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGV 66
D+F Y GG +TA P + ++ F LKE++ D E+S+LAK ++ GV
Sbjct: 353 DDFF--YVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGV 410
Query: 67 MMENIEKV 74
+ E V
Sbjct: 411 VAFKCENV 418
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,616,705
Number of Sequences: 62578
Number of extensions: 119403
Number of successful extensions: 456
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 42
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)