Query 032327
Match_columns 143
No_of_seqs 143 out of 948
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 12:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 7.6E-45 1.7E-49 271.0 8.9 141 1-143 77-217 (217)
2 PF00957 Synaptobrevin: Synapt 100.0 6.6E-30 1.4E-34 171.7 13.1 87 51-137 3-89 (89)
3 KOG0860 Synaptobrevin/VAMP-lik 100.0 8.5E-30 1.8E-34 176.4 12.7 89 46-135 25-113 (116)
4 KOG0861 SNARE protein YKT6, sy 99.9 2.5E-22 5.5E-27 147.8 9.5 102 1-106 91-192 (198)
5 KOG0862 Synaptobrevin/VAMP-lik 99.8 2.7E-20 5.8E-25 141.4 13.9 114 1-116 85-199 (216)
6 COG5143 SNC1 Synaptobrevin/VAM 99.6 8E-16 1.7E-20 115.4 8.5 107 1-112 83-190 (190)
7 COG5143 SNC1 Synaptobrevin/VAM 97.9 5.4E-05 1.2E-09 57.2 7.5 81 52-132 95-175 (190)
8 PF13774 Longin: Regulated-SNA 97.3 0.00018 3.9E-09 47.1 2.5 33 1-34 50-82 (83)
9 PF00957 Synaptobrevin: Synapt 97.0 0.032 7E-07 36.8 11.4 76 51-130 10-85 (89)
10 PF03908 Sec20: Sec20; InterP 97.0 0.045 9.8E-07 36.6 12.3 74 56-132 6-89 (92)
11 KOG0811 SNARE protein PEP12/VA 96.6 0.042 9.2E-07 43.9 10.9 45 51-95 180-224 (269)
12 KOG0810 SNARE protein Syntaxin 96.1 0.11 2.3E-06 42.2 10.5 59 51-109 206-267 (297)
13 COG5074 t-SNARE complex subuni 95.0 0.35 7.6E-06 38.0 9.5 40 53-92 187-226 (280)
14 PF09753 Use1: Membrane fusion 93.2 2.1 4.5E-05 33.6 10.9 25 84-108 197-221 (251)
15 PF03908 Sec20: Sec20; InterP 93.1 1.7 3.7E-05 28.8 12.0 42 51-92 8-49 (92)
16 PF05478 Prominin: Prominin; 92.8 3.2 6.9E-05 38.0 12.8 9 112-120 410-418 (806)
17 KOG0860 Synaptobrevin/VAMP-lik 91.7 3.3 7.2E-05 29.0 11.1 25 76-100 61-85 (116)
18 KOG1983 Tomosyn and related SN 90.8 0.22 4.8E-06 46.5 3.2 47 66-112 942-988 (993)
19 PF10779 XhlA: Haemolysin XhlA 89.3 3.9 8.5E-05 25.8 9.9 51 77-130 18-68 (71)
20 KOG1666 V-SNARE [Intracellular 88.4 10 0.00022 29.4 12.2 82 51-132 128-216 (220)
21 PF04799 Fzo_mitofusin: fzo-li 88.4 6.6 0.00014 29.4 8.9 55 51-105 109-163 (171)
22 COG5325 t-SNARE complex subuni 88.1 9.9 0.00022 30.6 10.2 65 51-115 195-263 (283)
23 KOG0810 SNARE protein Syntaxin 87.1 4 8.6E-05 33.2 7.6 70 68-137 195-291 (297)
24 KOG3385 V-SNARE [Intracellular 87.1 4.8 0.0001 28.2 7.0 73 51-128 36-112 (118)
25 COG5074 t-SNARE complex subuni 86.6 4.5 9.7E-05 32.0 7.3 31 50-80 187-217 (280)
26 PRK09400 secE preprotein trans 84.6 6.3 0.00014 24.4 6.0 52 82-133 4-55 (61)
27 PF12606 RELT: Tumour necrosis 82.5 0.92 2E-05 27.1 1.6 15 128-142 13-32 (50)
28 PTZ00478 Sec superfamily; Prov 82.1 7.5 0.00016 25.6 5.8 56 75-130 10-65 (81)
29 KOG3202 SNARE protein TLG1/Syn 82.0 23 0.0005 27.9 11.3 27 51-77 137-163 (235)
30 PF13800 Sigma_reg_N: Sigma fa 81.6 3.5 7.7E-05 27.4 4.4 13 102-114 5-17 (96)
31 PF03904 DUF334: Domain of unk 81.2 24 0.00053 27.6 12.4 16 118-133 153-168 (230)
32 PF13800 Sigma_reg_N: Sigma fa 80.2 4.5 9.8E-05 26.9 4.5 22 104-125 4-25 (96)
33 PRK10884 SH3 domain-containing 79.8 25 0.00055 27.0 12.9 56 47-102 89-155 (206)
34 PF06789 UPF0258: Uncharacteri 79.4 0.82 1.8E-05 33.6 0.7 37 97-136 119-155 (159)
35 KOG0812 SNARE protein SED5/Syn 79.2 33 0.00071 27.9 10.8 37 51-87 227-263 (311)
36 PRK01026 tetrahydromethanopter 78.8 15 0.00033 23.9 7.4 27 80-108 23-49 (77)
37 PF06008 Laminin_I: Laminin Do 77.7 32 0.00069 27.0 10.1 59 34-98 181-239 (264)
38 PF05478 Prominin: Prominin; 75.0 59 0.0013 29.9 11.5 32 106-137 407-438 (806)
39 PRK10884 SH3 domain-containing 74.9 36 0.00077 26.1 12.1 28 80-107 140-167 (206)
40 PF12352 V-SNARE_C: Snare regi 74.7 17 0.00036 22.2 9.0 58 50-107 7-64 (66)
41 PF01601 Corona_S2: Coronaviru 73.8 1.3 2.8E-05 39.2 0.5 51 82-133 518-568 (610)
42 PF05659 RPW8: Arabidopsis bro 73.3 13 0.00028 27.0 5.6 48 31-79 31-79 (147)
43 smart00096 UTG Uteroglobin. 73.1 10 0.00022 24.2 4.4 41 37-77 22-62 (69)
44 PF11166 DUF2951: Protein of u 72.1 28 0.0006 23.6 10.0 23 51-73 28-50 (98)
45 PF07798 DUF1640: Protein of u 71.5 38 0.00083 25.0 12.1 26 51-76 80-105 (177)
46 PF03904 DUF334: Domain of unk 70.6 50 0.0011 25.9 9.2 18 115-132 153-170 (230)
47 PF05568 ASFV_J13L: African sw 70.3 8.3 0.00018 28.3 4.0 25 113-137 29-53 (189)
48 KOG0809 SNARE protein TLG2/Syn 70.0 24 0.00052 28.7 6.9 36 51-86 218-253 (305)
49 KOG2678 Predicted membrane pro 69.9 38 0.00081 26.6 7.7 14 96-109 197-210 (244)
50 PF04210 MtrG: Tetrahydrometha 69.8 26 0.00056 22.4 8.2 28 79-108 19-46 (70)
51 PF01099 Uteroglobin: Uteroglo 69.8 10 0.00022 23.7 3.8 44 34-77 17-60 (67)
52 PF05739 SNARE: SNARE domain; 69.2 22 0.00047 21.2 9.5 43 51-93 4-46 (63)
53 PF07204 Orthoreo_P10: Orthore 68.9 3.2 6.9E-05 28.1 1.4 23 114-136 41-63 (98)
54 cd07912 Tweety_N N-terminal do 68.5 75 0.0016 27.1 13.3 41 29-72 104-144 (418)
55 PF04906 Tweety: Tweety; Inte 67.9 74 0.0016 26.9 11.4 18 51-68 103-120 (406)
56 TIGR00327 secE_euk_arch protei 67.0 24 0.00051 21.9 5.0 44 90-133 8-51 (61)
57 PHA02911 C-type lectin-like pr 66.6 15 0.00032 28.4 4.8 25 76-100 2-26 (213)
58 PF11337 DUF3139: Protein of u 66.0 7.3 0.00016 25.4 2.8 7 115-121 5-11 (85)
59 cd00633 Secretoglobin Secretog 65.7 20 0.00044 22.1 4.7 43 34-76 17-59 (67)
60 KOG3894 SNARE protein Syntaxin 65.7 75 0.0016 26.1 10.1 45 51-98 232-283 (316)
61 PHA02604 rI.-1 hypothetical pr 65.4 39 0.00084 24.0 6.4 67 4-73 52-122 (126)
62 KOG0859 Synaptobrevin/VAMP-lik 63.6 31 0.00067 26.6 6.0 52 59-110 126-177 (217)
63 PF06072 Herpes_US9: Alphaherp 63.3 29 0.00063 21.5 4.8 9 92-100 8-16 (60)
64 KOG1326 Membrane-associated pr 63.1 12 0.00025 35.3 4.3 28 104-131 1060-1087(1105)
65 TIGR01149 mtrG N5-methyltetrah 62.1 39 0.00083 21.6 7.0 27 80-108 20-46 (70)
66 KOG2678 Predicted membrane pro 60.7 56 0.0012 25.7 7.1 23 83-105 191-213 (244)
67 KOG0811 SNARE protein PEP12/VA 59.7 90 0.002 25.0 9.8 20 94-113 220-239 (269)
68 PF06008 Laminin_I: Laminin Do 58.4 74 0.0016 24.9 7.7 19 24-43 18-36 (264)
69 PRK11546 zraP zinc resistance 58.2 51 0.0011 23.9 6.2 16 51-66 89-104 (143)
70 COG5415 Predicted integral mem 58.1 70 0.0015 25.0 7.2 21 78-98 14-34 (251)
71 smart00397 t_SNARE Helical reg 58.0 36 0.00078 19.9 7.6 44 51-94 12-55 (66)
72 PF00429 TLV_coat: ENV polypro 57.6 25 0.00055 31.0 5.3 21 50-70 441-461 (561)
73 cd00193 t_SNARE Soluble NSF (N 56.5 37 0.0008 19.5 7.3 44 51-94 6-49 (60)
74 PF06837 Fijivirus_P9-2: Fijiv 55.6 26 0.00057 26.7 4.4 36 58-93 23-60 (214)
75 PF14575 EphA2_TM: Ephrin type 55.5 21 0.00045 22.9 3.4 19 119-137 6-24 (75)
76 KOG4782 Predicted membrane pro 55.1 36 0.00079 23.1 4.6 38 89-126 28-69 (108)
77 PF00558 Vpu: Vpu protein; In 54.4 17 0.00038 23.8 2.9 21 116-136 6-26 (81)
78 PF10717 ODV-E18: Occlusion-de 54.3 21 0.00046 23.6 3.3 12 120-131 31-42 (85)
79 PF04888 SseC: Secretion syste 54.2 1.1E+02 0.0024 24.4 9.6 39 56-94 17-55 (306)
80 PF12420 DUF3671: Protein of u 53.9 68 0.0015 21.9 6.0 20 107-126 38-57 (104)
81 PLN03223 Polycystin cation cha 53.3 43 0.00093 33.0 6.3 45 49-93 1579-1623(1634)
82 PRK10600 nitrate/nitrite senso 52.9 1.5E+02 0.0033 25.5 10.1 21 57-77 67-87 (569)
83 PF00482 T2SF: Type II secreti 50.0 27 0.00059 22.7 3.5 12 32-43 31-42 (124)
84 COG3074 Uncharacterized protei 49.3 69 0.0015 20.6 8.3 57 49-105 16-72 (79)
85 KOG3065 SNAP-25 (synaptosome-a 48.1 1.1E+02 0.0024 24.6 7.1 53 51-103 218-270 (273)
86 KOG3498 Preprotein translocase 47.4 70 0.0015 20.1 5.2 37 82-118 5-41 (67)
87 COG4327 Predicted membrane pro 47.4 46 0.001 22.5 4.2 33 100-132 4-36 (101)
88 PF13124 DUF3963: Protein of u 47.3 46 0.00099 18.5 3.4 16 108-123 17-32 (40)
89 PF08999 SP_C-Propep: Surfacta 47.2 33 0.00071 22.7 3.3 19 113-131 32-50 (93)
90 PF10031 DUF2273: Small integr 46.8 34 0.00074 20.3 3.2 13 109-121 2-14 (51)
91 PF12575 DUF3753: Protein of u 46.7 31 0.00067 22.2 3.1 8 60-67 24-31 (72)
92 PF09753 Use1: Membrane fusion 46.3 1.4E+02 0.003 23.2 10.3 19 83-101 203-221 (251)
93 PF14914 LRRC37AB_C: LRRC37A/B 46.3 21 0.00045 26.2 2.5 9 114-122 119-127 (154)
94 PF01102 Glycophorin_A: Glycop 46.1 30 0.00064 24.5 3.3 12 117-128 67-78 (122)
95 KOG1666 V-SNARE [Intracellular 45.5 1.4E+02 0.0031 23.2 11.7 47 83-130 171-217 (220)
96 PF13908 Shisa: Wnt and FGF in 45.3 11 0.00023 27.9 1.0 16 121-136 82-97 (179)
97 KOG3251 Golgi SNAP receptor co 45.1 1.5E+02 0.0032 23.1 10.7 14 115-128 191-204 (213)
98 PF02038 ATP1G1_PLM_MAT8: ATP1 45.0 57 0.0012 19.5 3.9 15 111-125 11-25 (50)
99 PF04799 Fzo_mitofusin: fzo-li 44.2 1.4E+02 0.0029 22.5 8.0 48 52-99 117-164 (171)
100 TIGR01478 STEVOR variant surfa 43.8 29 0.00064 28.1 3.3 38 31-70 55-92 (295)
101 KOG0972 Huntingtin interacting 43.8 46 0.001 27.3 4.4 84 2-95 248-335 (384)
102 PHA02557 22 prohead core prote 43.6 73 0.0016 25.6 5.4 91 2-93 91-189 (271)
103 PF03302 VSP: Giardia variant- 43.2 16 0.00035 30.7 1.9 13 126-138 383-395 (397)
104 PF15339 Afaf: Acrosome format 42.4 45 0.00097 25.2 3.8 25 113-137 127-152 (200)
105 COG2443 Sss1 Preprotein transl 42.2 87 0.0019 19.7 6.7 38 96-133 19-56 (65)
106 PTZ00370 STEVOR; Provisional 42.0 32 0.0007 27.9 3.3 13 32-44 55-67 (296)
107 PF13706 PepSY_TM_3: PepSY-ass 41.7 51 0.0011 18.0 3.2 17 108-124 2-18 (37)
108 TIGR01006 polys_exp_MPA1 polys 41.7 53 0.0011 24.9 4.4 20 109-128 16-35 (226)
109 PF13172 PepSY_TM_1: PepSY-ass 41.4 56 0.0012 17.3 3.9 18 107-124 2-19 (34)
110 PF07296 TraP: TraP protein; 41.3 1.5E+02 0.0032 22.8 6.5 45 87-132 5-49 (202)
111 PF06422 PDR_CDR: CDR ABC tran 41.1 38 0.00083 22.9 3.1 36 96-131 34-69 (103)
112 PF11657 Activator-TraM: Trans 40.9 1.4E+02 0.003 21.7 13.0 10 6-15 7-16 (144)
113 PRK09793 methyl-accepting prot 40.8 2.4E+02 0.0051 24.3 13.8 7 37-43 98-104 (533)
114 COG5547 Small integral membran 40.5 42 0.00092 20.7 2.9 16 110-125 3-18 (62)
115 PF10039 DUF2275: Predicted in 40.0 58 0.0013 25.3 4.3 27 102-128 22-48 (218)
116 KOG1690 emp24/gp25L/p24 family 39.9 1.5E+02 0.0032 23.0 6.3 20 93-112 167-187 (215)
117 KOG3658 Tumor necrosis factor- 39.3 41 0.00089 30.6 3.7 29 109-137 677-705 (764)
118 PF07439 DUF1515: Protein of u 38.7 1.3E+02 0.0029 20.9 7.3 50 51-100 8-61 (112)
119 KOG3230 Vacuolar assembly/sort 38.2 94 0.002 24.0 5.1 22 59-80 134-155 (224)
120 PRK15348 type III secretion sy 38.0 74 0.0016 25.2 4.7 28 102-129 209-236 (249)
121 PF06695 Sm_multidrug_ex: Puta 37.9 1.4E+02 0.003 20.7 5.9 22 97-120 57-78 (121)
122 PF04510 DUF577: Family of unk 37.6 1.7E+02 0.0037 22.0 6.3 45 59-113 127-171 (174)
123 PF00517 GP41: Retroviral enve 37.3 1.8E+02 0.004 22.1 6.7 12 109-120 152-163 (204)
124 KOG4111 Translocase of outer m 37.0 1.3E+02 0.0027 21.7 5.3 37 96-132 64-101 (136)
125 PF14712 Snapin_Pallidin: Snap 36.9 1.2E+02 0.0025 19.6 7.0 54 51-105 35-90 (92)
126 PF13040 DUF3901: Protein of u 36.9 81 0.0018 17.8 3.7 26 64-89 9-34 (40)
127 PRK14125 cell division suppres 36.9 63 0.0014 22.0 3.7 17 108-124 2-18 (103)
128 KOG0862 Synaptobrevin/VAMP-lik 36.8 2E+02 0.0044 22.4 9.8 67 51-119 118-195 (216)
129 PF13980 UPF0370: Uncharacteri 36.4 69 0.0015 19.8 3.4 14 110-123 3-16 (63)
130 PF04531 Phage_holin_1: Bacter 36.3 27 0.00058 22.9 1.7 25 105-129 2-26 (84)
131 PF13627 LPAM_2: Prokaryotic l 36.2 41 0.0009 16.9 2.0 10 128-137 7-16 (24)
132 PF08006 DUF1700: Protein of u 36.1 1.7E+02 0.0037 21.3 8.2 9 3-11 6-14 (181)
133 COG3524 KpsE Capsule polysacch 36.0 63 0.0014 26.7 4.1 17 51-67 230-246 (372)
134 PF12751 Vac7: Vacuolar segreg 36.0 42 0.00091 28.4 3.2 21 106-126 294-314 (387)
135 PF07172 GRP: Glycine rich pro 35.7 45 0.00098 22.4 2.8 17 115-131 4-20 (95)
136 PHA03011 hypothetical protein; 35.2 1.5E+02 0.0033 20.4 6.9 56 33-91 63-118 (120)
137 PF13937 DUF4212: Domain of un 35.1 1.2E+02 0.0026 19.7 4.7 24 106-129 3-26 (81)
138 KOG0448 Mitofusin 1 GTPase, in 35.1 3.7E+02 0.0079 24.8 9.8 85 23-108 649-737 (749)
139 TIGR01478 STEVOR variant surfa 34.9 51 0.0011 26.8 3.4 23 51-73 103-125 (295)
140 PF08372 PRT_C: Plant phosphor 34.9 1.8E+02 0.004 21.3 6.4 14 100-113 80-93 (156)
141 PHA03386 P10 fibrous body prot 34.6 1.2E+02 0.0027 20.4 4.6 16 51-66 19-34 (94)
142 PF15102 TMEM154: TMEM154 prot 34.5 10 0.00022 27.7 -0.6 9 131-139 72-80 (146)
143 PRK10381 LPS O-antigen length 34.5 66 0.0014 26.9 4.2 19 108-126 34-52 (377)
144 PF14004 DUF4227: Protein of u 34.3 80 0.0017 20.1 3.6 25 109-133 2-26 (71)
145 PF08900 DUF1845: Domain of un 34.2 1.4E+02 0.003 23.0 5.6 48 26-74 37-85 (217)
146 PRK13664 hypothetical protein; 34.1 86 0.0019 19.3 3.5 14 110-123 3-16 (62)
147 PF05393 Hum_adeno_E3A: Human 33.8 36 0.00079 22.8 2.0 9 128-136 46-54 (94)
148 KOG4433 Tweety transmembrane/c 33.5 3.4E+02 0.0073 23.9 10.9 25 52-76 128-152 (526)
149 PF00306 ATP-synt_ab_C: ATP sy 33.4 1E+02 0.0023 20.7 4.4 41 67-107 3-45 (113)
150 PRK10617 cytochrome c-type pro 33.4 92 0.002 23.8 4.5 6 111-116 19-24 (200)
151 PF10661 EssA: WXG100 protein 33.3 59 0.0013 23.5 3.3 13 120-132 125-137 (145)
152 KOG4657 Uncharacterized conser 32.7 2.5E+02 0.0054 22.2 9.3 45 31-75 30-75 (246)
153 KOG3208 SNARE protein GS28 [In 32.5 2.5E+02 0.0053 22.1 10.2 13 121-133 217-229 (231)
154 PRK10299 PhoPQ regulatory prot 32.5 35 0.00075 20.0 1.6 25 112-136 2-28 (47)
155 COG2976 Uncharacterized protei 32.4 51 0.0011 25.5 2.9 25 108-132 15-39 (207)
156 PF10875 DUF2670: Protein of u 32.2 65 0.0014 22.9 3.1 26 109-134 18-43 (139)
157 PHA02673 ORF109 EEV glycoprote 32.1 1.6E+02 0.0034 21.9 5.3 10 106-115 24-33 (161)
158 PF12718 Tropomyosin_1: Tropom 31.6 2E+02 0.0042 20.6 8.3 7 94-100 109-115 (143)
159 PF10168 Nup88: Nuclear pore c 31.3 2.7E+02 0.0059 25.5 7.8 20 64-83 595-614 (717)
160 PF10372 YojJ: Bacterial membr 31.2 1.4E+02 0.0031 18.9 6.0 23 80-102 43-65 (70)
161 PTZ00370 STEVOR; Provisional 30.7 57 0.0012 26.5 3.0 19 52-70 103-121 (296)
162 PHA03164 hypothetical protein; 30.6 80 0.0017 20.6 3.2 17 116-132 60-76 (88)
163 PF02520 DUF148: Domain of unk 30.6 1.7E+02 0.0037 19.6 6.2 64 5-79 1-64 (113)
164 PRK15471 chain length determin 30.3 90 0.002 25.6 4.2 19 107-125 24-42 (325)
165 COG1459 PulF Type II secretory 29.9 3.4E+02 0.0074 22.9 9.4 10 76-85 133-142 (397)
166 KOG3287 Membrane trafficking p 29.9 2.8E+02 0.006 21.8 8.0 57 66-122 150-211 (236)
167 TIGR02338 gimC_beta prefoldin, 29.6 1.8E+02 0.0039 19.6 5.8 28 78-105 66-93 (110)
168 PF10112 Halogen_Hydrol: 5-bro 29.6 1.6E+02 0.0034 22.0 5.2 44 33-76 135-181 (199)
169 KOG3003 Molecular chaperone of 29.2 2.9E+02 0.0062 21.8 7.5 50 51-101 71-120 (236)
170 PF02994 Transposase_22: L1 tr 29.0 1.9E+02 0.0041 24.1 6.0 43 77-119 149-198 (370)
171 PRK15041 methyl-accepting chem 29.0 3.9E+02 0.0084 23.2 13.6 15 53-67 122-136 (554)
172 PF06143 Baculo_11_kDa: Baculo 28.7 1.4E+02 0.0031 19.7 4.2 10 107-116 29-38 (84)
173 PRK12430 putative bifunctional 28.1 1.2E+02 0.0026 25.6 4.6 40 80-119 102-141 (379)
174 PRK11638 lipopolysaccharide bi 28.0 93 0.002 25.7 4.0 19 108-126 17-35 (342)
175 COG4499 Predicted membrane pro 27.9 1.2E+02 0.0027 25.8 4.6 35 97-133 204-238 (434)
176 PF10392 COG5: Golgi transport 27.8 2.1E+02 0.0046 19.9 6.6 59 51-109 33-95 (132)
177 TIGR03545 conserved hypothetic 27.7 3.5E+02 0.0076 24.0 7.6 49 51-99 191-239 (555)
178 PF03670 UPF0184: Uncharacteri 27.2 1.5E+02 0.0032 19.5 4.1 28 81-108 42-69 (83)
179 PRK11901 hypothetical protein; 27.1 70 0.0015 26.4 3.0 11 120-130 42-52 (327)
180 PRK09697 protein secretion pro 27.1 56 0.0012 22.9 2.1 26 109-136 19-44 (139)
181 PF12579 DUF3755: Protein of u 26.6 55 0.0012 17.9 1.6 19 50-68 16-34 (35)
182 PF04155 Ground-like: Ground-l 26.6 92 0.002 19.6 3.0 12 62-73 10-21 (76)
183 PF14992 TMCO5: TMCO5 family 26.5 3.5E+02 0.0076 21.9 15.9 44 35-81 117-160 (280)
184 PF03238 ESAG1: ESAG protein; 26.2 2.4E+02 0.0052 22.0 5.6 57 68-124 6-62 (231)
185 PF07352 Phage_Mu_Gam: Bacteri 26.1 2.5E+02 0.0053 20.0 7.5 51 50-100 9-60 (149)
186 KOG2662 Magnesium transporters 26.1 4.2E+02 0.0091 22.7 7.9 25 113-137 383-407 (414)
187 PHA03240 envelope glycoprotein 26.0 57 0.0012 25.6 2.2 15 118-132 216-230 (258)
188 PF08525 OapA_N: Opacity-assoc 25.9 1.1E+02 0.0024 15.9 2.9 8 115-122 11-18 (30)
189 PRK09793 methyl-accepting prot 25.9 3.8E+02 0.0082 23.1 7.5 15 84-98 497-511 (533)
190 COG1969 HyaC Ni,Fe-hydrogenase 25.7 76 0.0016 24.6 2.8 19 102-120 95-117 (227)
191 PHA02898 virion envelope prote 25.6 1.8E+02 0.0038 19.5 4.1 31 108-138 41-74 (92)
192 PF11598 COMP: Cartilage oligo 25.4 1.5E+02 0.0032 17.2 3.9 24 51-74 8-31 (45)
193 PF03194 LUC7: LUC7 N_terminus 25.3 3.4E+02 0.0074 21.4 8.5 72 29-106 81-162 (254)
194 TIGR02509 type_III_yopR type I 25.2 2.6E+02 0.0056 20.0 8.1 78 4-88 38-126 (131)
195 PRK15041 methyl-accepting chem 25.1 2.9E+02 0.0064 23.9 6.7 53 53-105 470-522 (554)
196 PF08858 IDEAL: IDEAL domain; 24.8 1.3E+02 0.0028 16.4 3.5 19 62-80 9-27 (37)
197 PF02009 Rifin_STEVOR: Rifin/s 24.8 1.2E+02 0.0025 24.8 3.9 7 126-132 273-279 (299)
198 PRK07668 hypothetical protein; 24.5 3.5E+02 0.0075 21.5 6.5 56 57-115 24-79 (254)
199 TIGR03017 EpsF chain length de 24.5 4.1E+02 0.0089 22.1 9.5 40 35-77 269-308 (444)
200 COG1723 Uncharacterized conser 24.4 1.9E+02 0.004 24.0 5.0 64 71-138 265-330 (331)
201 PF13571 DUF4133: Domain of un 24.1 1.1E+02 0.0023 20.8 3.0 20 117-137 21-40 (96)
202 PF15106 TMEM156: TMEM156 prot 24.0 51 0.0011 25.7 1.6 26 106-131 168-193 (226)
203 PF11157 DUF2937: Protein of u 24.0 3E+02 0.0065 20.3 6.8 23 76-98 75-97 (167)
204 PHA02902 putative IMV membrane 23.8 1.2E+02 0.0026 19.1 3.0 15 118-132 7-21 (70)
205 PHA02680 ORF090 IMV phosphoryl 23.6 1.7E+02 0.0037 19.6 3.8 24 109-132 43-66 (91)
206 PF12279 DUF3619: Protein of u 23.4 1.5E+02 0.0033 21.0 3.9 22 107-128 67-88 (131)
207 PHA02947 S-S bond formation pa 23.3 82 0.0018 24.5 2.6 19 30-48 61-79 (215)
208 TIGR01005 eps_transp_fam exopo 23.3 5.6E+02 0.012 23.2 11.6 24 51-74 316-339 (754)
209 PF13675 PilJ: Type IV pili me 23.2 1.6E+02 0.0035 19.2 3.9 11 31-41 54-64 (112)
210 PF05440 MtrB: Tetrahydrometha 23.2 1.2E+02 0.0026 20.6 3.1 15 111-125 76-90 (97)
211 cd07634 BAR_GAP10-like The Bin 23.1 2.8E+02 0.006 21.4 5.5 22 51-72 70-91 (207)
212 KOG4515 Uncharacterized conser 23.0 69 0.0015 24.5 2.1 49 41-89 141-195 (217)
213 PF13163 DUF3999: Protein of u 22.9 76 0.0016 27.0 2.6 22 111-132 406-427 (429)
214 PF06103 DUF948: Bacterial pro 22.8 2.2E+02 0.0047 18.2 9.1 14 52-65 34-47 (90)
215 PF12777 MT: Microtubule-bindi 22.6 4.3E+02 0.0093 21.6 9.1 38 34-72 201-242 (344)
216 PF10853 DUF2650: Protein of u 22.6 1.4E+02 0.0031 16.6 2.8 18 108-125 18-35 (38)
217 PF01895 PhoU: PhoU domain; I 22.3 1.9E+02 0.0042 17.4 10.1 39 45-83 22-60 (88)
218 PF02994 Transposase_22: L1 tr 22.3 4.5E+02 0.0097 21.9 7.0 22 79-100 144-165 (370)
219 PF15145 DUF4577: Domain of un 22.1 1.1E+02 0.0025 21.4 2.9 21 116-136 67-87 (128)
220 PF05803 Chordopox_L2: Chordop 21.8 2.1E+02 0.0046 19.0 4.0 18 108-125 60-77 (87)
221 TIGR03761 ICE_PFL4669 integrat 21.7 3.5E+02 0.0076 20.9 5.9 47 27-74 36-83 (216)
222 PF06825 HSBP1: Heat shock fac 21.4 2E+02 0.0043 17.3 4.2 40 53-95 12-51 (54)
223 PRK10132 hypothetical protein; 21.3 2.8E+02 0.0061 19.0 11.8 18 78-95 40-57 (108)
224 PF02937 COX6C: Cytochrome c o 21.3 2.3E+02 0.005 18.1 4.0 24 109-132 12-35 (73)
225 cd07636 BAR_GRAF The Bin/Amphi 21.2 3.9E+02 0.0084 20.6 6.9 22 51-72 70-91 (207)
226 PF05454 DAG1: Dystroglycan (D 21.2 32 0.00069 27.9 0.0 28 51-78 67-94 (290)
227 KOG0994 Extracellular matrix g 21.0 8.5E+02 0.018 24.4 10.1 54 55-108 1665-1718(1758)
228 COG0690 SecE Preprotein transl 21.0 2.3E+02 0.005 17.9 5.9 16 96-111 21-36 (73)
229 PRK13739 conjugal transfer pro 20.9 3.9E+02 0.0084 20.4 6.7 44 88-132 6-49 (198)
230 PF11026 DUF2721: Protein of u 20.6 3.1E+02 0.0067 19.2 8.6 14 101-114 51-64 (130)
231 PF05596 Taeniidae_ag: Taeniid 20.5 2.3E+02 0.005 17.7 5.8 42 34-76 14-55 (64)
232 PTZ00382 Variant-specific surf 20.4 57 0.0012 21.9 1.1 9 128-136 84-92 (96)
233 PTZ00046 rifin; Provisional 20.4 4.8E+02 0.01 21.9 6.7 48 29-78 50-101 (358)
234 PF05957 DUF883: Bacterial pro 20.3 2.6E+02 0.0056 18.1 11.3 6 105-110 69-74 (94)
235 PRK15048 methyl-accepting chem 20.3 5.6E+02 0.012 22.0 13.7 12 51-62 118-129 (553)
236 PF00523 Fusion_gly: Fusion gl 20.3 91 0.002 27.2 2.6 18 51-69 432-449 (490)
237 PHA02141 hypothetical protein 20.2 1.3E+02 0.0029 20.0 2.8 16 109-124 10-25 (105)
238 KOG0058 Peptide exporter, ABC 20.2 6.9E+02 0.015 23.1 8.7 48 30-78 226-273 (716)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-45 Score=271.01 Aligned_cols=141 Identities=70% Similarity=1.080 Sum_probs=136.1
Q ss_pred CchHHHHHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 032327 1 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEK 80 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~ 80 (143)
|+||++|+++|.++|+ ....++.+|+||.+|+++|++.|+||.++|. .|++++++.|++||+++|.+|||++++|||+
T Consensus 77 faFLe~Ik~~F~k~YG-~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvldRGek 154 (217)
T KOG0859|consen 77 FAFLERIKEDFKKRYG-GGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLDRGEK 154 (217)
T ss_pred HHHHHHHHHHHHHHhc-cchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCe
Confidence 7899999999999994 5588899999999999999999999999998 6999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCccCC
Q 032327 81 IELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVLSVCHGFNCGK 143 (143)
Q Consensus 81 L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~~~~c~gf~C~~ 143 (143)
||.|++||++|+.+|..|++++++++|+|||+|+|++++++++++++++||++.+||||.|.+
T Consensus 155 iELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~~s 217 (217)
T KOG0859|consen 155 IELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTCPS 217 (217)
T ss_pred EEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 2
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.97 E-value=6.6e-30 Score=171.68 Aligned_cols=87 Identities=47% Similarity=0.841 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILI 130 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~i 130 (143)
|++.+++.++++|+++|.+|++++++|||+|++|+++|++|+++|..|+++|++++|++||+++|+++++++++++++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 032327 131 IVLSVCH 137 (143)
Q Consensus 131 i~~~~c~ 137 (143)
|++++||
T Consensus 83 i~~~~~g 89 (89)
T PF00957_consen 83 IIIVICG 89 (89)
T ss_dssp HHHTT--
T ss_pred HHHHHhC
Confidence 9999997
No 3
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.5e-30 Score=176.39 Aligned_cols=89 Identities=39% Similarity=0.713 Sum_probs=83.1
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 032327 46 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILI 125 (143)
Q Consensus 46 ~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~ 125 (143)
+|.+ +++++++++++||.+||++|++|+||||++|++|++||++|+.+|..|.+.|.++||+|||+|.|+.++++++++
T Consensus 25 ~~~~-~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~ 103 (116)
T KOG0860|consen 25 NTAN-DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVII 103 (116)
T ss_pred chhh-HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434 999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHh
Q 032327 126 ALILIIVLSV 135 (143)
Q Consensus 126 ~~~~ii~~~~ 135 (143)
+++++|++++
T Consensus 104 i~l~iiii~~ 113 (116)
T KOG0860|consen 104 ILLVVIIIYI 113 (116)
T ss_pred HHHHHHHHHH
Confidence 8888777655
No 4
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.5e-22 Score=147.79 Aligned_cols=102 Identities=32% Similarity=0.500 Sum_probs=93.4
Q ss_pred CchHHHHHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 032327 1 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEK 80 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~ 80 (143)
|++|++|.++|....++.+|+...+.. .+| |.|+.++.+| +||.++|+|.++|+||+|+|.||+++|+.+|+|||+
T Consensus 91 ~tLL~kvld~~~~k~~~~~W~~~~~~~--~~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEK 166 (198)
T KOG0861|consen 91 FTLLNKVLDEFTTKVPATQWPVGETAD--LSY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHKTIESVLERGEK 166 (198)
T ss_pred HHHHHHHHHHHhhcCcccccCcCCCcC--CCc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 679999999998888899999554443 344 7999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhHHHHHhhhHHHH
Q 032327 81 IELLVDKTENLHQQAQDFRSTGTKMR 106 (143)
Q Consensus 81 L~~L~~ks~~L~~~a~~F~~~a~~l~ 106 (143)
||+|++||+.|+.+|+.|+++|++.+
T Consensus 167 LDdLV~KSe~Ls~qSKmfYKsAKK~N 192 (198)
T KOG0861|consen 167 LDDLVSKSENLSLQSKMFYKSAKKTN 192 (198)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999875
No 5
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.7e-20 Score=141.43 Aligned_cols=114 Identities=22% Similarity=0.424 Sum_probs=106.0
Q ss_pred CchHHHHHHHHHhhcCCCCCc-cCCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032327 1 MAFLERVKDEFVSKYGGGKAA-TAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 79 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~-~~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge 79 (143)
|+|||++.++|.+.|+..-.. ...||++ .+|++.|++.-+.| +|++..+++.++.+++.+|+.+|.+||+.++.|||
T Consensus 85 F~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~y-nd~r~~~n~~~~n~el~~v~~im~~niedvl~rg~ 162 (216)
T KOG0862|consen 85 FSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRY-NDTRSQRNLLKLNQELQDVQRIMVENLEDVLQRGE 162 (216)
T ss_pred HHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhch
Confidence 789999999999999755544 5679998 99999999999999 57887799999999999999999999999999999
Q ss_pred hHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHH
Q 032327 80 KIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKI 116 (143)
Q Consensus 80 ~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~ 116 (143)
.|+.|...+.+|+..|+..+++|+.++++..|.+|.-
T Consensus 163 ~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa 199 (216)
T KOG0862|consen 163 VLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAA 199 (216)
T ss_pred HHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988873
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.64 E-value=8e-16 Score=115.37 Aligned_cols=107 Identities=23% Similarity=0.299 Sum_probs=90.4
Q ss_pred CchHHHHHHHHHhhcCCCCCccCC-CCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032327 1 MAFLERVKDEFVSKYGGGKAATAP-ANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 79 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~~~~-~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge 79 (143)
|++++++..+|..+....++..+. ++.+ ..|++.+++ .| +||...|++.+++.+++|++.+|.+||++++.|||
T Consensus 83 ~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~---~y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~e 157 (190)
T COG5143 83 YGYLNSIATEFLKSSALEQLIDDTVGIMR-VNIDKVIEK---GY-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDE 157 (190)
T ss_pred hHHHHhhccHhhhhhhHhhcccCccchhh-hhHHHHHHh---hc-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 467888888888777544444333 3333 566666665 26 78888899999999999999999999999999999
Q ss_pred hHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHH
Q 032327 80 KIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQ 112 (143)
Q Consensus 80 ~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk 112 (143)
+|+.|+++|+.|...|..|++.|++.+..+||+
T Consensus 158 kl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 158 KLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 999999999999999999999999999999984
No 7
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.92 E-value=5.4e-05 Score=57.21 Aligned_cols=81 Identities=23% Similarity=0.324 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032327 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 131 (143)
Q Consensus 52 ki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii 131 (143)
+...++...++++.+|..|+++.+++|.+...+.|+..++++.++.|++-+.+...++|||.-|+=.+++....+..-.+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~ 174 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSK 174 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 46678888999999999999999999999999999999999999999999999999999999998888777665544444
Q ss_pred H
Q 032327 132 V 132 (143)
Q Consensus 132 ~ 132 (143)
.
T Consensus 175 ~ 175 (190)
T COG5143 175 M 175 (190)
T ss_pred H
Confidence 3
No 8
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=97.31 E-value=0.00018 Score=47.07 Aligned_cols=33 Identities=42% Similarity=0.823 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHhhcCCCCCccCCCCCccchhch
Q 032327 1 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGP 34 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~ 34 (143)
|+||++|+++|.++|++.++.++.||++ .+|++
T Consensus 50 F~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~F~~ 82 (83)
T PF13774_consen 50 FAFLEEIKQEFIQTYGGDQIKSASPYSF-KEFDS 82 (83)
T ss_dssp HHHHHHHHHHHHHHCTTTTTTTSTTTTT-HHHHH
T ss_pred HHHHHHHHHHHHHHcCcchhcccCCcch-hhcCC
Confidence 7899999999999997688888899999 88875
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.04 E-value=0.032 Score=36.81 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILI 130 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~i 130 (143)
+.++.++..+.+--+.+.++-+++=+=.++-+.|.+.|+....+|...++.. +-..++-+-+.+++++++++++++
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~----~~~~~k~~~i~~~iv~~~~~~i~~ 85 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM----WWRNYKLYIIIIIIVIIIILIIII 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHhHHhhhhhhhhHHHH
Confidence 4566666667666666777766666666677777778888888777775533 222234444444444444444444
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.03 E-value=0.045 Score=36.55 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHH----------hhhHHHHHHHHHHHhHHHHHHHHHHH
Q 032327 56 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFR----------STGTKMRRKMWLQNMKIKLIVLGILI 125 (143)
Q Consensus 56 ~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~----------~~a~~l~~~~~wk~~k~~iii~~iv~ 125 (143)
+-+.+..++..|.+.+++- ...++.|.+.|+.|......|. +--+++.|+.|.-.+-+++.++++++
T Consensus 6 vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~ 82 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLL 82 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445556666666554433 3345555555655554443332 33345566666666666666666666
Q ss_pred HHHHHHH
Q 032327 126 ALILIIV 132 (143)
Q Consensus 126 ~~~~ii~ 132 (143)
+++||++
T Consensus 83 ~v~yI~~ 89 (92)
T PF03908_consen 83 VVLYILW 89 (92)
T ss_pred HHHHHhh
Confidence 6666654
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.042 Score=43.88 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQA 95 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a 95 (143)
+.|.+++.++-||.+|+++==..+=+-|+.+|.+++.-++.+.+.
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNV 224 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Confidence 788999999999999999988888899999999988776666443
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.11 Score=42.21 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHH---HhHHHHHhhhHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH---QQAQDFRSTGTKMRRKM 109 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~---~~a~~F~~~a~~l~~~~ 109 (143)
+.+.+++..+.|++++-.+=--.+-..||.++.++...++-. ..+..=-++|.+..++.
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka 267 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777888888888777766677788888888776544433 23333334455555443
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.00 E-value=0.35 Score=38.03 Aligned_cols=40 Identities=15% Similarity=0.381 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHH
Q 032327 53 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 92 (143)
Q Consensus 53 i~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~ 92 (143)
+.+++.-+.|+.....+=-+.+.++.+..|.+.+..++-+
T Consensus 187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~ 226 (280)
T COG5074 187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQ 226 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHH
Confidence 4444444444444444444567888888888877766554
No 14
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=93.24 E-value=2.1 Score=33.59 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=12.8
Q ss_pred HHHhhHHHHHhHHHHHhhhHHHHHH
Q 032327 84 LVDKTENLHQQAQDFRSTGTKMRRK 108 (143)
Q Consensus 84 L~~ks~~L~~~a~~F~~~a~~l~~~ 108 (143)
|..-.+.+..+.......+.+|+..
T Consensus 197 L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 197 LDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555565555555543
No 15
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=93.08 E-value=1.7 Score=28.81 Aligned_cols=42 Identities=5% Similarity=0.079 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 92 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~ 92 (143)
+.+....+.+.+.-+-...|++.+.+.-+.|..+.+.=..+.
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~ 49 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQS 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666555544443
No 16
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=92.79 E-value=3.2 Score=38.01 Aligned_cols=9 Identities=0% Similarity=-0.016 Sum_probs=4.0
Q ss_pred HHhHHHHHH
Q 032327 112 QNMKIKLIV 120 (143)
Q Consensus 112 k~~k~~iii 120 (143)
-.|+|++.+
T Consensus 410 ~~yR~~~~l 418 (806)
T PF05478_consen 410 DSYRWIVGL 418 (806)
T ss_pred HHHHHHHHH
Confidence 344544443
No 17
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=3.3 Score=29.03 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=16.6
Q ss_pred HhhHhHHHHHHhhHHHHHhHHHHHh
Q 032327 76 DRGEKIELLVDKTENLHQQAQDFRS 100 (143)
Q Consensus 76 ~Rge~L~~L~~ks~~L~~~a~~F~~ 100 (143)
+=++|-|.|..-|+.-...|...++
T Consensus 61 ~L~drad~L~~~as~F~~~A~klkr 85 (116)
T KOG0860|consen 61 ELDDRADQLQAGASQFEKTAVKLKR 85 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666688888888877744
No 18
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=0.22 Score=46.46 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHH
Q 032327 66 VMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQ 112 (143)
Q Consensus 66 im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk 112 (143)
....--+.+.+|||+|+.++++|++|.+++++|...|.++.-++-.+
T Consensus 942 ~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~k 988 (993)
T KOG1983|consen 942 AASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVK 988 (993)
T ss_pred hhhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhh
Confidence 33444567899999999999999999999999999999887555433
No 19
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=89.32 E-value=3.9 Score=25.84 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=25.7
Q ss_pred hhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032327 77 RGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILI 130 (143)
Q Consensus 77 Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~i 130 (143)
..++++.|+..++.+......-..+-.++.-...| -+.++++++|..++++
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~ 68 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYL 68 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44555566666666666555555555555544433 1224444444444433
No 20
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=10 Score=29.43 Aligned_cols=82 Identities=17% Similarity=0.364 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HH-HHH-HhhHhHHHHHHhhHHHHHhHHHHHhhhHHH---HHHHHHHHhHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMEN--IE-KVL-DRGEKIELLVDKTENLHQQAQDFRSTGTKM---RRKMWLQNMKIKLIVLGI 123 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~n--i~-~~l-~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l---~~~~~wk~~k~~iii~~i 123 (143)
+.+.+.-..+.|-+.|+.++ |. .+| +=+..=+.|+.-=+.|-+......+..+-| .|++.-..+-+++||++.
T Consensus 128 erLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l 207 (220)
T KOG1666|consen 128 ERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALL 207 (220)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666555 21 222 223333344444445555555554444333 334444444455555555
Q ss_pred HHHHHHHHH
Q 032327 124 LIALILIIV 132 (143)
Q Consensus 124 v~~~~~ii~ 132 (143)
+++++++++
T Consensus 208 ~~~il~ilY 216 (220)
T KOG1666|consen 208 VLAILLILY 216 (220)
T ss_pred HHHHHHHHH
Confidence 554444444
No 21
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=88.35 E-value=6.6 Score=29.40 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKM 105 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l 105 (143)
.-..++..+|++++.-|.+.|+.+-+.-++||.+..++..|.+.|..+...-...
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788999999999999999999999999999888888888777665544433
No 22
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=88.07 E-value=9.9 Score=30.59 Aligned_cols=65 Identities=12% Similarity=0.188 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHh----hHHHHHhHHHHHhhhHHHHHHHHHHHhH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDK----TENLHQQAQDFRSTGTKMRRKMWLQNMK 115 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~k----s~~L~~~a~~F~~~a~~l~~~~~wk~~k 115 (143)
..+.++..-+.|+..|.++==.-+.+.|+-.+.++-. +.+|+..++...+.-..-||.-.|+-|-
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~ 263 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYL 263 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhH
Confidence 5667777777788888777777788888888776553 3344445555555444444444444433
No 23
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.09 E-value=4 Score=33.16 Aligned_cols=70 Identities=21% Similarity=0.422 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhHhHHHHHHhhHHHH------------------------HhHHHHHhh-hHHHHHHHH--HHHhHHHHHH
Q 032327 68 MENIEKVLDRGEKIELLVDKTENLH------------------------QQAQDFRST-GTKMRRKMW--LQNMKIKLIV 120 (143)
Q Consensus 68 ~~ni~~~l~Rge~L~~L~~ks~~L~------------------------~~a~~F~~~-a~~l~~~~~--wk~~k~~iii 120 (143)
.+.+.++-+|.+.+-.|+..-.+|. .+|..|-.+ +..++.... -++=||.+++
T Consensus 195 ~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ 274 (297)
T KOG0810|consen 195 KQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIII 274 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeee
Confidence 3445566666666666555544444 356666665 345554433 3344566665
Q ss_pred HHHHHHHHHHHHHHhcc
Q 032327 121 LGILIALILIIVLSVCH 137 (143)
Q Consensus 121 ~~iv~~~~~ii~~~~c~ 137 (143)
+++++++++|+++++++
T Consensus 275 ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 275 IIILIIIIVVLVVVIVV 291 (297)
T ss_pred ehHHHHHHHHHhhhhcc
Confidence 55555555556566664
No 24
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.06 E-value=4.8 Score=28.24 Aligned_cols=73 Identities=10% Similarity=0.175 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH----hhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVD----KTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIA 126 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~----ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~ 126 (143)
..+..+++.|..+|..-.+--+++-....-|+.+.+ -|.-|+.+=..|+.-|+.=.++.| .|.+++++|++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~-----~~m~~f~lV~~ 110 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLL-----CWMAVFSLVAF 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHH
Confidence 678888899998888776655555444444444433 233344444555555554333222 34445544443
Q ss_pred HH
Q 032327 127 LI 128 (143)
Q Consensus 127 ~~ 128 (143)
++
T Consensus 111 fi 112 (118)
T KOG3385|consen 111 FI 112 (118)
T ss_pred HH
Confidence 33
No 25
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=86.59 E-value=4.5 Score=31.98 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 032327 50 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEK 80 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~ni~~~l~Rge~ 80 (143)
.-|+.+.-+++.++-+-|.+-+.+--+.=+.
T Consensus 187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~ 217 (280)
T COG5074 187 IKKIEKTMAELTQLFNDMEELVIEQQENVDV 217 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 4677777777777766666544433333333
No 26
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=84.59 E-value=6.3 Score=24.44 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=33.5
Q ss_pred HHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032327 82 ELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVL 133 (143)
Q Consensus 82 ~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~~ 133 (143)
+.+.+...+.-.++..+-+.|++=.++-.++..+...+..+++-++.++|-+
T Consensus 4 ~~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~Ikl 55 (61)
T PRK09400 4 NKLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFIIYL 55 (61)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566667777777777777777777777766655555555555543
No 27
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=82.54 E-value=0.92 Score=27.14 Aligned_cols=15 Identities=27% Similarity=0.689 Sum_probs=8.5
Q ss_pred HHHHHHHhcc-----CCccC
Q 032327 128 ILIIVLSVCH-----GFNCG 142 (143)
Q Consensus 128 ~~ii~~~~c~-----gf~C~ 142 (143)
..++.+++|. |++|.
T Consensus 13 ~~lLg~~I~~~~K~ygYkht 32 (50)
T PF12606_consen 13 MGLLGLSICTTLKAYGYKHT 32 (50)
T ss_pred HHHHHHHHHHHhhccccccc
Confidence 3344455673 66885
No 28
>PTZ00478 Sec superfamily; Provisional
Probab=82.06 E-value=7.5 Score=25.57 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=36.6
Q ss_pred HHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032327 75 LDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILI 130 (143)
Q Consensus 75 l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~i 130 (143)
.+..+.++.+.+...+.-..+..|-+.++|=.|+-..+-.+...+..+++-++.++
T Consensus 10 ~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~ 65 (81)
T PTZ00478 10 TDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYS 65 (81)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566777777777777888888888877777777766665544444333333
No 29
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.03 E-value=23 Score=27.87 Aligned_cols=27 Identities=7% Similarity=0.286 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDR 77 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~R 77 (143)
..+...|.++-+=++..-++|.+-+.|
T Consensus 137 ~~~~~~qqqm~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 137 QEIVQLQQQMLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444433
No 30
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=81.60 E-value=3.5 Score=27.38 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHh
Q 032327 102 GTKMRRKMWLQNM 114 (143)
Q Consensus 102 a~~l~~~~~wk~~ 114 (143)
.++.||+..|++.
T Consensus 5 ~kK~K~k~~l~~~ 17 (96)
T PF13800_consen 5 LKKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555554
No 31
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=81.17 E-value=24 Score=27.60 Aligned_cols=16 Identities=13% Similarity=0.272 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 032327 118 LIVLGILIALILIIVL 133 (143)
Q Consensus 118 iii~~iv~~~~~ii~~ 133 (143)
.+.+.++++++++.++
T Consensus 153 gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 153 GIGAMLFVFMLFALVM 168 (230)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333344444433
No 32
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=80.17 E-value=4.5 Score=26.87 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 032327 104 KMRRKMWLQNMKIKLIVLGILI 125 (143)
Q Consensus 104 ~l~~~~~wk~~k~~iii~~iv~ 125 (143)
-+|+..|+..++.+++.+++++
T Consensus 4 i~kK~K~k~~l~~~~isi~~~l 25 (96)
T PF13800_consen 4 ILKKAKRKSRLRTVVISIISAL 25 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 4667777777788776655533
No 33
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.80 E-value=25 Score=26.96 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=26.5
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHH-----------HHHHhhHhHHHHHHhhHHHHHhHHHHHhhh
Q 032327 47 PEEISKLAKVKAQVSEVKGVMMENIE-----------KVLDRGEKIELLVDKTENLHQQAQDFRSTG 102 (143)
Q Consensus 47 ~~~~dki~~~~~~l~ev~~im~~ni~-----------~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a 102 (143)
|...+.+.++++++++++.-+.+--+ ++-++...+++|...-++|...-..-+...
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666666666665544333211 122233444445555555555444444433
No 34
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=79.44 E-value=0.82 Score=33.57 Aligned_cols=37 Identities=24% Similarity=0.470 Sum_probs=23.6
Q ss_pred HHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 032327 97 DFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVLSVC 136 (143)
Q Consensus 97 ~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~~~~c 136 (143)
-.++.-.+.||...| |+..+|+++||.+++||++.+|
T Consensus 119 LLKkKEae~kr~K~C---ki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 119 LLKKKEAELKRSKVC---KIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHheEEEEEEEE
Confidence 344555566666444 5666666677677777777777
No 35
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.24 E-value=33 Score=27.93 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDK 87 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~k 87 (143)
+.++.++..+.|+=+|+.+=-..+=+.||-+..+.+.
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~n 263 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDN 263 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888999999999999998877777887755544443
No 36
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=78.78 E-value=15 Score=23.86 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=14.8
Q ss_pred hHHHHHHhhHHHHHhHHHHHhhhHHHHHH
Q 032327 80 KIELLVDKTENLHQQAQDFRSTGTKMRRK 108 (143)
Q Consensus 80 ~L~~L~~ks~~L~~~a~~F~~~a~~l~~~ 108 (143)
|||++++|-|. .+|.-|++.-+++=|-
T Consensus 23 rLD~iEeKVEf--tn~Ei~Qr~GkkvGRD 49 (77)
T PRK01026 23 RLDEIEEKVEF--TNAEIFQRIGKKVGRD 49 (77)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhhhH
Confidence 34444444443 3456677777777654
No 37
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=77.69 E-value=32 Score=26.96 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=35.0
Q ss_pred hhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHH
Q 032327 34 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDF 98 (143)
Q Consensus 34 ~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F 98 (143)
+.|.+.+..|+ +++..++.-+++..+...+.-+.--.+..+++++..+-+.++..-..+
T Consensus 181 ~~i~~~L~~~~------~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~ 239 (264)
T PF06008_consen 181 EAIRDDLNDYN------AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEV 239 (264)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555552 566666666666666666665555566666666666666666544333
No 38
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=75.03 E-value=59 Score=29.89 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=14.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 032327 106 RRKMWLQNMKIKLIVLGILIALILIIVLSVCH 137 (143)
Q Consensus 106 ~~~~~wk~~k~~iii~~iv~~~~~ii~~~~c~ 137 (143)
.+.-.+|.+--.++..++++++++.++...||
T Consensus 407 ~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G 438 (806)
T PF05478_consen 407 EKYDSYRWIVGLILCCVLLLIVLCLLLGLLCG 438 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444544444444444444444433443
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.93 E-value=36 Score=26.14 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=12.9
Q ss_pred hHHHHHHhhHHHHHhHHHHHhhhHHHHH
Q 032327 80 KIELLVDKTENLHQQAQDFRSTGTKMRR 107 (143)
Q Consensus 80 ~L~~L~~ks~~L~~~a~~F~~~a~~l~~ 107 (143)
..+.|..+-+.++.........-..+++
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555444443333433
No 40
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=74.73 E-value=17 Score=22.19 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHH
Q 032327 50 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 107 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~ 107 (143)
.+.+.....-++++.++-.+.+..+-..++.|.....+..++...-..-.+.-+++.|
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 3788888999999999999999999999999999888887777655544444444443
No 41
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=73.82 E-value=1.3 Score=39.17 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=13.5
Q ss_pred HHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032327 82 ELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVL 133 (143)
Q Consensus 82 ~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~~ 133 (143)
+.|++--++|.++--+.++-. +++....|--|-|.+|++++++++++++|.
T Consensus 518 ~~Lq~~I~~LN~tlVdLe~Ln-~~e~YiKWPWyVWL~i~~~li~~~~~l~~~ 568 (610)
T PF01601_consen 518 DELQEVIDNLNNTLVDLEWLN-RYETYIKWPWYVWLAIILALIAFALILLWC 568 (610)
T ss_dssp HHHHHHHHHHHCCHHHCCHHT-TCCCHH------------------------
T ss_pred HHHHHHHHHhhhhheeHHHhc-ceeEEeehHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666655554432 333444454455555555555555555554
No 42
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=73.34 E-value=13 Score=26.99 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=23.7
Q ss_pred hhchhHHHHHHHhhc-ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032327 31 EFGPKLKELMQYCVD-HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 79 (143)
Q Consensus 31 ~F~~~l~~~~~~~n~-~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge 79 (143)
.|.+.++++.+.-+. -|-- +.|..++.+++.-..-..+-+...|++|.
T Consensus 31 ~fk~~l~~L~sTl~~i~P~i-~eI~~~~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 31 SFKSILKRLESTLESIIPII-KEIDKLNVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred hhhhHHHHHHHHHHHhhhHH-HHHHHHhhhcCCchhHHHHHHHHHHHHHH
Confidence 455555555443321 2332 55666666666554444444555555553
No 43
>smart00096 UTG Uteroglobin.
Probab=73.14 E-value=10 Score=24.17 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=31.4
Q ss_pred HHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032327 37 KELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 77 (143)
Q Consensus 37 ~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~R 77 (143)
...++.||.||...+...+++.=+|....-=+.||-+++++
T Consensus 22 ~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 22 EASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44567888888888888888888888777777777776653
No 44
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=72.12 E-value=28 Score=23.60 Aligned_cols=23 Identities=4% Similarity=0.114 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEK 73 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~ 73 (143)
+.|..-+...++|..-|-.|+|+
T Consensus 28 ~~Ik~gq~~qe~v~~kld~tlD~ 50 (98)
T PF11166_consen 28 DEIKDGQHDQELVNQKLDRTLDE 50 (98)
T ss_pred HHHHHhHhhHHHHHHHHHhhHHH
Confidence 33444444556666666666666
No 45
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=71.50 E-value=38 Score=25.00 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLD 76 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~ 76 (143)
....+++.+++.++.-+.+-|+++-.
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888888887776543
No 46
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=70.59 E-value=50 Score=25.91 Aligned_cols=18 Identities=6% Similarity=0.303 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032327 115 KIKLIVLGILIALILIIV 132 (143)
Q Consensus 115 k~~iii~~iv~~~~~ii~ 132 (143)
.+..+++++++++++..+
T Consensus 153 gi~aml~Vf~LF~lvmt~ 170 (230)
T PF03904_consen 153 GIGAMLFVFMLFALVMTI 170 (230)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344444444444444433
No 47
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=70.28 E-value=8.3 Score=28.33 Aligned_cols=25 Identities=12% Similarity=0.528 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcc
Q 032327 113 NMKIKLIVLGILIALILIIVLSVCH 137 (143)
Q Consensus 113 ~~k~~iii~~iv~~~~~ii~~~~c~ 137 (143)
.+.++++++++|.++++++.+..|.
T Consensus 29 thm~tILiaIvVliiiiivli~lcs 53 (189)
T PF05568_consen 29 THMYTILIAIVVLIIIIIVLIYLCS 53 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555556674
No 48
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.04 E-value=24 Score=28.71 Aligned_cols=36 Identities=8% Similarity=0.252 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVD 86 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ 86 (143)
.-+.++-.-+-|+..|+.+==..+.+.|--+|-+.=
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDy 253 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDY 253 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheec
Confidence 457788888889999999988889999977775543
No 49
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=69.89 E-value=38 Score=26.62 Aligned_cols=14 Identities=7% Similarity=0.150 Sum_probs=6.1
Q ss_pred HHHHhhhHHHHHHH
Q 032327 96 QDFRSTGTKMRRKM 109 (143)
Q Consensus 96 ~~F~~~a~~l~~~~ 109 (143)
....-.+.++++..
T Consensus 197 ~~L~~~Serve~y~ 210 (244)
T KOG2678|consen 197 QGLMDVSERVEKYD 210 (244)
T ss_pred HHHHhhhHHHHHHH
Confidence 33444444454443
No 50
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=69.83 E-value=26 Score=22.35 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=15.9
Q ss_pred HhHHHHHHhhHHHHHhHHHHHhhhHHHHHH
Q 032327 79 EKIELLVDKTENLHQQAQDFRSTGTKMRRK 108 (143)
Q Consensus 79 e~L~~L~~ks~~L~~~a~~F~~~a~~l~~~ 108 (143)
+|||.+++|-|. .+|.-+++.-+++=|-
T Consensus 19 ~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRD 46 (70)
T PF04210_consen 19 KRLDEIEEKVEF--TNAEIAQRAGKKIGRD 46 (70)
T ss_pred HHHHHHHHHHHh--HHHHHHHHHhHHhhhH
Confidence 345555555443 3456677777777654
No 51
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=69.77 E-value=10 Score=23.65 Aligned_cols=44 Identities=27% Similarity=0.342 Sum_probs=31.5
Q ss_pred hhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032327 34 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 77 (143)
Q Consensus 34 ~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~R 77 (143)
+..+..++.|+.+|...+...++++=+++...--+.|+.++|+.
T Consensus 17 ~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 17 EEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566778888888888888899998888888888888877763
No 52
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=69.15 E-value=22 Score=21.21 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 93 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~ 93 (143)
+.+..+...+.+++++..+==+.+-+.++-|+.+.+..+.-..
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~ 46 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANE 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHH
Confidence 6788999999999999888878888899999998886665543
No 53
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=68.86 E-value=3.2 Score=28.08 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 032327 114 MKIKLIVLGILIALILIIVLSVC 136 (143)
Q Consensus 114 ~k~~iii~~iv~~~~~ii~~~~c 136 (143)
|+.++..++-+++++++|.+..|
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHH
Confidence 45566666655555666666666
No 54
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=68.49 E-value=75 Score=27.13 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=26.8
Q ss_pred cchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHH
Q 032327 29 NKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIE 72 (143)
Q Consensus 29 ~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~ 72 (143)
|.+|..-+.+..++. ++ ..+-++.+.++++.+...+..+++
T Consensus 104 N~~~h~gV~~t~~si-~~--an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 104 NDETHDGVVQLTYSL-RN--ANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred cHHHhhhHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 566666677666665 22 336677777777777777766665
No 55
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=67.85 E-value=74 Score=26.85 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMM 68 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~ 68 (143)
+.+..++..++++.+-|.
T Consensus 103 ~t~~~i~~~v~~~~~~l~ 120 (406)
T PF04906_consen 103 HTLSGIDNLVSDTTEALN 120 (406)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544443
No 56
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=67.04 E-value=24 Score=21.90 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=28.7
Q ss_pred HHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032327 90 NLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVL 133 (143)
Q Consensus 90 ~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~~ 133 (143)
+.-.++..+-+.+++=.|+-.++..+...+..+++-++.++|-+
T Consensus 8 ~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~Ikl 51 (61)
T TIGR00327 8 EFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYIIKI 51 (61)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777777888888888777665555555555443
No 57
>PHA02911 C-type lectin-like protein; Provisional
Probab=66.59 E-value=15 Score=28.39 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=17.8
Q ss_pred HhhHhHHHHHHhhHHHHHhHHHHHh
Q 032327 76 DRGEKIELLVDKTENLHQQAQDFRS 100 (143)
Q Consensus 76 ~Rge~L~~L~~ks~~L~~~a~~F~~ 100 (143)
+|-..+|.|++++.-+.+.|..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (213)
T PHA02911 2 EMLGPIEVLEEKMKFFADASSIYQK 26 (213)
T ss_pred CccccHHHHHHHHHHHHhhhhhhhh
Confidence 4556778888887777777776655
No 58
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=66.01 E-value=7.3 Score=25.39 Aligned_cols=7 Identities=57% Similarity=0.904 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 032327 115 KIKLIVL 121 (143)
Q Consensus 115 k~~iii~ 121 (143)
|++++++
T Consensus 5 kii~iii 11 (85)
T PF11337_consen 5 KIILIII 11 (85)
T ss_pred HHHHHHH
Confidence 3333333
No 59
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=65.73 E-value=20 Score=22.14 Aligned_cols=43 Identities=28% Similarity=0.299 Sum_probs=32.8
Q ss_pred hhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 34 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 76 (143)
Q Consensus 34 ~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~ 76 (143)
..+...++.||.+|...+...++++=+++...--+.|+-++++
T Consensus 17 ~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 17 EEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 4566777889888888888888888888776666777666664
No 60
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.67 E-value=75 Score=26.11 Aligned_cols=45 Identities=22% Similarity=0.538 Sum_probs=25.0
Q ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHhhHhHHHHHH----hhHHHHHhHHHH
Q 032327 51 SKLAKVKAQ---VSEVKGVMMENIEKVLDRGEKIELLVD----KTENLHQQAQDF 98 (143)
Q Consensus 51 dki~~~~~~---l~ev~~im~~ni~~~l~Rge~L~~L~~----ks~~L~~~a~~F 98 (143)
|.+.+++.. +..++++|.+ ++++..+++|.+.+ -++++++.-...
T Consensus 232 devrqie~~lvEI~~Lq~ifse---hvl~Q~~~Id~I~d~~~~~teNIk~gNe~i 283 (316)
T KOG3894|consen 232 DEVRQIEKRLVEISALQDIFSE---HVLQQDQNIDLIHDLQSGATENIKDGNEEI 283 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence 444444444 4444455544 57777777777776 345555544444
No 61
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=65.37 E-value=39 Score=24.03 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhcCC-CCC---ccCCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032327 4 LERVKDEFVSKYGG-GKA---ATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEK 73 (143)
Q Consensus 4 L~ei~~~F~~~~~~-~~~---~~~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~ 73 (143)
|.++-+.|.++|-| ... ++-+..+. .++...|+++.+..+.-.+ .-...+++-+||++....+.+-+
T Consensus 52 ~~dLiD~F~E~yiG~~Gr~Y~P~l~~~s~-~d~~~~l~~~l~~a~~i~~--~l~s~L~N~~DdI~~~~~qt~Yk 122 (126)
T PHA02604 52 MPDLIDKFAEQYIGISGRKYKPSLPSASE-LDTIAFLDELLQEAEEIYK--ELPSALQSTLDDITGLCYQTKYK 122 (126)
T ss_pred hhHHHHHHHHHHHhhcccCcCcccccccc-cCHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677889888865 222 22222221 2556666665533211111 23355777788887777766544
No 62
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.61 E-value=31 Score=26.62 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHH
Q 032327 59 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 110 (143)
Q Consensus 59 ~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~ 110 (143)
.+..++..|.+==+-++++=|++-+--+|-|-|-+.+...+.++...|....
T Consensus 126 ~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r 177 (217)
T KOG0859|consen 126 KLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGR 177 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHH
Confidence 4566777777766667776666666566666666899999999988886643
No 63
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=63.26 E-value=29 Score=21.45 Aligned_cols=9 Identities=22% Similarity=0.468 Sum_probs=5.2
Q ss_pred HHhHHHHHh
Q 032327 92 HQQAQDFRS 100 (143)
Q Consensus 92 ~~~a~~F~~ 100 (143)
+++|..|-+
T Consensus 8 nETA~~FL~ 16 (60)
T PF06072_consen 8 NETATEFLR 16 (60)
T ss_pred cccHHHHHH
Confidence 456666654
No 64
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=63.09 E-value=12 Score=35.29 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032327 104 KMRRKMWLQNMKIKLIVLGILIALILII 131 (143)
Q Consensus 104 ~l~~~~~wk~~k~~iii~~iv~~~~~ii 131 (143)
|--++..|+.|+++++..++++++++..
T Consensus 1060 K~~~~i~W~~yr~~il~~l~ililll~l 1087 (1105)
T KOG1326|consen 1060 KSFKFILWHRYRWYILLLLLILILLLLL 1087 (1105)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3336789999999888766555544433
No 65
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=62.13 E-value=39 Score=21.56 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=15.0
Q ss_pred hHHHHHHhhHHHHHhHHHHHhhhHHHHHH
Q 032327 80 KIELLVDKTENLHQQAQDFRSTGTKMRRK 108 (143)
Q Consensus 80 ~L~~L~~ks~~L~~~a~~F~~~a~~l~~~ 108 (143)
|||.+++|-|. .+|.-|++.-+++=|-
T Consensus 20 rLd~iEeKVEf--~~~E~~Qr~Gkk~GRD 46 (70)
T TIGR01149 20 RLDEIEEKVEF--VNGEVAQRIGKKVGRD 46 (70)
T ss_pred HHHHHHHHHHH--HHHHHHHHHhHHhhhH
Confidence 34444554443 2456677777777654
No 66
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=60.74 E-value=56 Score=25.68 Aligned_cols=23 Identities=4% Similarity=-0.009 Sum_probs=15.8
Q ss_pred HHHHhhHHHHHhHHHHHhhhHHH
Q 032327 83 LLVDKTENLHQQAQDFRSTGTKM 105 (143)
Q Consensus 83 ~L~~ks~~L~~~a~~F~~~a~~l 105 (143)
.+.+.++.|.+.|....+.+++=
T Consensus 191 ~~D~N~~~L~~~Serve~y~ksk 213 (244)
T KOG2678|consen 191 GIDVNSQGLMDVSERVEKYDKSK 213 (244)
T ss_pred HHhHHHHHHHhhhHHHHHHHHhh
Confidence 34556777778888887777554
No 67
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.73 E-value=90 Score=25.05 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=11.3
Q ss_pred hHHHHHhhhHHHHHHHHHHH
Q 032327 94 QAQDFRSTGTKMRRKMWLQN 113 (143)
Q Consensus 94 ~a~~F~~~a~~l~~~~~wk~ 113 (143)
.+..-+..+..|++.+..++
T Consensus 220 a~~nveqg~~~L~kA~~yq~ 239 (269)
T KOG0811|consen 220 ASVNVEQGTENLRKAAKYQR 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555667776655443
No 68
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=58.42 E-value=74 Score=24.89 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=9.2
Q ss_pred CCCCccchhchhHHHHHHHh
Q 032327 24 PANGLNKEFGPKLKELMQYC 43 (143)
Q Consensus 24 ~~~~l~~~F~~~l~~~~~~~ 43 (143)
.||.+...+. .+......|
T Consensus 18 ~~~~l~~~~e-~~~~~L~~~ 36 (264)
T PF06008_consen 18 APYKLLSSIE-DLTNQLRSY 36 (264)
T ss_pred hHHHHHHHHH-HHHHHHHHH
Confidence 4666655554 333344444
No 69
>PRK11546 zraP zinc resistance protein; Provisional
Probab=58.22 E-value=51 Score=23.94 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGV 66 (143)
Q Consensus 51 dki~~~~~~l~ev~~i 66 (143)
.+|.++.+|+.+++.-
T Consensus 89 ~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 89 SKINAVAKEMENLRQS 104 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555666665555543
No 70
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=58.10 E-value=70 Score=24.98 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=10.5
Q ss_pred hHhHHHHHHhhHHHHHhHHHH
Q 032327 78 GEKIELLVDKTENLHQQAQDF 98 (143)
Q Consensus 78 ge~L~~L~~ks~~L~~~a~~F 98 (143)
++.|+.|+.+-++++-.+...
T Consensus 14 ~~~L~rle~qi~q~~~~~~~~ 34 (251)
T COG5415 14 TADLSRLESQIHQLDVALKKS 34 (251)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444
No 71
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=57.99 E-value=36 Score=19.91 Aligned_cols=44 Identities=14% Similarity=0.405 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 94 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~ 94 (143)
+.+..+...+.+++++..+=-..+-+.++.|+.+....+.....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67888889999999988866667777888888888766655544
No 72
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=57.59 E-value=25 Score=31.03 Aligned_cols=21 Identities=14% Similarity=0.395 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 032327 50 ISKLAKVKAQVSEVKGVMMEN 70 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~n 70 (143)
.+.+..++++++.+.++..+|
T Consensus 441 ~~~i~~l~~~~~sl~~~v~qn 461 (561)
T PF00429_consen 441 EDSISALQEQLTSLAEVVLQN 461 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 378899999999999988888
No 73
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=56.53 E-value=37 Score=19.54 Aligned_cols=44 Identities=20% Similarity=0.417 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 94 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~ 94 (143)
+.+..+...+.+++++..+=-..+-+-|+.|+.+....+.....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888899988887755556667778888888765555443
No 74
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=55.57 E-value=26 Score=26.72 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHH--HHHHHHHhhHhHHHHHHhhHHHHH
Q 032327 58 AQVSEVKGVMME--NIEKVLDRGEKIELLVDKTENLHQ 93 (143)
Q Consensus 58 ~~l~ev~~im~~--ni~~~l~Rge~L~~L~~ks~~L~~ 93 (143)
-+++.++.+|++ |-+.+++|.-.=++|.++-++|+.
T Consensus 23 iq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE~ 60 (214)
T PF06837_consen 23 IQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLET 60 (214)
T ss_pred HHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHhh
Confidence 347777888875 677888775555555555555553
No 75
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=55.51 E-value=21 Score=22.89 Aligned_cols=19 Identities=42% Similarity=1.057 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 032327 119 IVLGILIALILIIVLSVCH 137 (143)
Q Consensus 119 ii~~iv~~~~~ii~~~~c~ 137 (143)
+++++++++++++...+|+
T Consensus 6 ~~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhheeEEEEE
Confidence 3444444444454455563
No 76
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=55.06 E-value=36 Score=23.05 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=21.4
Q ss_pred HHHHHhHHHHHhhhHHHHHH----HHHHHhHHHHHHHHHHHH
Q 032327 89 ENLHQQAQDFRSTGTKMRRK----MWLQNMKIKLIVLGILIA 126 (143)
Q Consensus 89 ~~L~~~a~~F~~~a~~l~~~----~~wk~~k~~iii~~iv~~ 126 (143)
|+|.-.-..|.+++.++++. ..-+|||-.+-.+++..+
T Consensus 28 EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~al 69 (108)
T KOG4782|consen 28 EDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIGAL 69 (108)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 35555566777777666544 344566655555444443
No 77
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=54.41 E-value=17 Score=23.85 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 032327 116 IKLIVLGILIALILIIVLSVC 136 (143)
Q Consensus 116 ~~iii~~iv~~~~~ii~~~~c 136 (143)
+..+++++|++++.++++.++
T Consensus 6 i~~iialiv~~iiaIvvW~iv 26 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTIV 26 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554
No 78
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=54.31 E-value=21 Score=23.57 Aligned_cols=12 Identities=25% Similarity=0.700 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 032327 120 VLGILIALILII 131 (143)
Q Consensus 120 i~~iv~~~~~ii 131 (143)
++++|+++++|+
T Consensus 31 LivLVIIiLlIm 42 (85)
T PF10717_consen 31 LIVLVIIILLIM 42 (85)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 79
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=54.23 E-value=1.1e+02 Score=24.36 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHh
Q 032327 56 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 94 (143)
Q Consensus 56 ~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~ 94 (143)
++...++.+.....+..++-++.++++..+++.++++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~kaeeaqK~ 55 (306)
T PF04888_consen 17 LKSKKEQIERASEAQEKKAEEKAEEIEEAQEKAEEAQKA 55 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444445555567777777777777766555433
No 80
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=53.87 E-value=68 Score=21.85 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=11.6
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 032327 107 RKMWLQNMKIKLIVLGILIA 126 (143)
Q Consensus 107 ~~~~wk~~k~~iii~~iv~~ 126 (143)
++.-|+.|...+++-+++.+
T Consensus 38 kki~~KKyg~~~il~~l~~l 57 (104)
T PF12420_consen 38 KKIIFKKYGLIFILPFLVPL 57 (104)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 34566777766665554443
No 81
>PLN03223 Polycystin cation channel protein; Provisional
Probab=53.27 E-value=43 Score=32.98 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHH
Q 032327 49 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 93 (143)
Q Consensus 49 ~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~ 93 (143)
+.|.+.+-+..|-+++.-+.++-.++++|+++|.++++|-.+|.+
T Consensus 1579 e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1579 EVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 346777778888888888999999999999999999998777654
No 82
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=52.85 E-value=1.5e+02 Score=25.52 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032327 57 KAQVSEVKGVMMENIEKVLDR 77 (143)
Q Consensus 57 ~~~l~ev~~im~~ni~~~l~R 77 (143)
..+.+++.....+.+...++.
T Consensus 67 ~~~~~~~~~~w~~~~~~~~~~ 87 (569)
T PRK10600 67 LAQLQALQDYWRNELKPALQQ 87 (569)
T ss_pred HHHHHHHHHHHHHhhhHHhhc
Confidence 344555555555555555543
No 83
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=49.97 E-value=27 Score=22.70 Aligned_cols=12 Identities=8% Similarity=0.216 Sum_probs=5.0
Q ss_pred hchhHHHHHHHh
Q 032327 32 FGPKLKELMQYC 43 (143)
Q Consensus 32 F~~~l~~~~~~~ 43 (143)
+...+++.....
T Consensus 31 l~~~~~~~~~~l 42 (124)
T PF00482_consen 31 LREELQKIRRRL 42 (124)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 84
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.33 E-value=69 Score=20.56 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=37.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHH
Q 032327 49 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKM 105 (143)
Q Consensus 49 ~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l 105 (143)
+.|-|+-++-++++.++-=..=-+.+-+-.+..+.|+...++|...-...+.+-+.|
T Consensus 16 AvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888899999998875433333444445566777777777777666665544443
No 85
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.06 E-value=1.1e+02 Score=24.65 Aligned_cols=53 Identities=13% Similarity=0.292 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGT 103 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~ 103 (143)
+++.++.+-+..+|+...+-=.++=...+.|+.+.++++++...-..=-++++
T Consensus 218 ~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~ 270 (273)
T KOG3065|consen 218 ENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAK 270 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHH
Confidence 45566666666666666555556666778889999999888765444434343
No 86
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.44 E-value=70 Score=20.13 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHH
Q 032327 82 ELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKL 118 (143)
Q Consensus 82 ~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~i 118 (143)
+.+.+-+.+-..++..|.++.++=-||-.-+-.+-..
T Consensus 5 ~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~a 41 (67)
T KOG3498|consen 5 DQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATA 41 (67)
T ss_pred HHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3334444444445555555555555555544444333
No 87
>COG4327 Predicted membrane protein [Function unknown]
Probab=47.40 E-value=46 Score=22.53 Aligned_cols=33 Identities=15% Similarity=0.424 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032327 100 STGTKMRRKMWLQNMKIKLIVLGILIALILIIV 132 (143)
Q Consensus 100 ~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~ 132 (143)
+.+...++..|-.|..++.++.++-.++.++.+
T Consensus 4 k~~~~~a~aywranttli~~lL~vwflVSfvvi 36 (101)
T COG4327 4 KDAEHPARAYWRANTTLIAALLGVWFLVSFVVI 36 (101)
T ss_pred cccccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345556677788888887776665555555443
No 88
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=47.32 E-value=46 Score=18.52 Aligned_cols=16 Identities=19% Similarity=0.625 Sum_probs=9.2
Q ss_pred HHHHHHhHHHHHHHHH
Q 032327 108 KMWLQNMKIKLIVLGI 123 (143)
Q Consensus 108 ~~~wk~~k~~iii~~i 123 (143)
+.|-||...-..+.++
T Consensus 17 qkwirnit~cfal~vv 32 (40)
T PF13124_consen 17 QKWIRNITFCFALLVV 32 (40)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677887655444333
No 89
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=47.25 E-value=33 Score=22.68 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=8.7
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 032327 113 NMKIKLIVLGILIALILII 131 (143)
Q Consensus 113 ~~k~~iii~~iv~~~~~ii 131 (143)
+.|-.+|+.++|++++.+|
T Consensus 32 ~lKrlliivvVvVlvVvvi 50 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVI 50 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehhHHHH
Confidence 4444444444444444444
No 90
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=46.79 E-value=34 Score=20.31 Aligned_cols=13 Identities=23% Similarity=0.141 Sum_probs=8.1
Q ss_pred HHHHHhHHHHHHH
Q 032327 109 MWLQNMKIKLIVL 121 (143)
Q Consensus 109 ~~wk~~k~~iii~ 121 (143)
-+|++++..++-+
T Consensus 2 e~~~~~~~~iiG~ 14 (51)
T PF10031_consen 2 EFWKNHRGKIIGG 14 (51)
T ss_pred hHHHHCcchHHHH
Confidence 4688887555433
No 91
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=46.69 E-value=31 Score=22.17 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 032327 60 VSEVKGVM 67 (143)
Q Consensus 60 l~ev~~im 67 (143)
++.|+.+|
T Consensus 24 i~vVksVl 31 (72)
T PF12575_consen 24 INVVKSVL 31 (72)
T ss_pred HHHHHHHH
Confidence 34444443
No 92
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=46.30 E-value=1.4e+02 Score=23.22 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=9.7
Q ss_pred HHHHhhHHHHHhHHHHHhh
Q 032327 83 LLVDKTENLHQQAQDFRST 101 (143)
Q Consensus 83 ~L~~ks~~L~~~a~~F~~~ 101 (143)
.++..+..|...+......
T Consensus 203 ~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 203 GLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455566665555443
No 93
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=46.25 E-value=21 Score=26.20 Aligned_cols=9 Identities=22% Similarity=0.099 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 032327 114 MKIKLIVLG 122 (143)
Q Consensus 114 ~k~~iii~~ 122 (143)
.|+++.+.+
T Consensus 119 nklilaisv 127 (154)
T PF14914_consen 119 NKLILAISV 127 (154)
T ss_pred chhHHHHHH
Confidence 344444433
No 94
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.14 E-value=30 Score=24.47 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 032327 117 KLIVLGILIALI 128 (143)
Q Consensus 117 ~iii~~iv~~~~ 128 (143)
..|++++++.++
T Consensus 67 ~~Ii~gv~aGvI 78 (122)
T PF01102_consen 67 IGIIFGVMAGVI 78 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehhHHHHHHHH
Confidence 333333333333
No 95
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.54 E-value=1.4e+02 Score=23.19 Aligned_cols=47 Identities=11% Similarity=0.187 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 032327 83 LLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILI 130 (143)
Q Consensus 83 ~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~i 130 (143)
-|.+-.++|..+.+....-++++-+..| --+-+++++++++.+++|.
T Consensus 171 rL~~td~~lgkS~kiL~tM~RR~~~nk~-~~~aii~~l~~~il~ilY~ 217 (220)
T KOG1666|consen 171 RLRETDANLGKSRKILTTMTRRLIRNKF-TLTAIIALLVLAILLILYS 217 (220)
T ss_pred HHHhchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666644443 3444444455444555543
No 96
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=45.34 E-value=11 Score=27.94 Aligned_cols=16 Identities=44% Similarity=0.955 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhc
Q 032327 121 LGILIALILIIVLSVC 136 (143)
Q Consensus 121 ~~iv~~~~~ii~~~~c 136 (143)
++|++++++|+++.+|
T Consensus 82 vgvi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 82 VGVICGVIAIVVLIVC 97 (179)
T ss_pred eehhhHHHHHHHhHhh
Confidence 3333333444444455
No 97
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.05 E-value=1.5e+02 Score=23.09 Aligned_cols=14 Identities=36% Similarity=0.178 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 032327 115 KIKLIVLGILIALI 128 (143)
Q Consensus 115 k~~iii~~iv~~~~ 128 (143)
|++.++++++++++
T Consensus 191 k~iF~~G~i~~~v~ 204 (213)
T KOG3251|consen 191 KIIFYGGVILTLVI 204 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555444444
No 98
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=45.03 E-value=57 Score=19.45 Aligned_cols=15 Identities=7% Similarity=0.328 Sum_probs=7.1
Q ss_pred HHHhHHHHHHHHHHH
Q 032327 111 LQNMKIKLIVLGILI 125 (143)
Q Consensus 111 wk~~k~~iii~~iv~ 125 (143)
|.+.++..++.+.|+
T Consensus 11 y~tLrigGLi~A~vl 25 (50)
T PF02038_consen 11 YETLRIGGLIFAGVL 25 (50)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHhhccchHHHHHH
Confidence 455555544444333
No 99
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.17 E-value=1.4e+02 Score=22.46 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHH
Q 032327 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFR 99 (143)
Q Consensus 52 ki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~ 99 (143)
.+...+.++++--.-+.+.|+.+-+-..++..|.+|+..|...-..|.
T Consensus 117 ~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 117 QVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555444444555555555555555555443
No 100
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=43.80 E-value=29 Score=28.13 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=19.0
Q ss_pred hhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHH
Q 032327 31 EFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMEN 70 (143)
Q Consensus 31 ~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~n 70 (143)
+=+|.+++.|+.+|+ ++..|.++.++.-++.++.|.+|
T Consensus 55 ~nDpEmK~iid~~n~--eaikkyqqT~~~f~e~~e~~~k~ 92 (295)
T TIGR01478 55 HNDPELKEIIDKLNE--EAIKKYQETHDPYEQLQELVEKN 92 (295)
T ss_pred CCcHHHHHHHHHHhH--HHhhhhhhhcchHHHHHHHHHhc
Confidence 336788888877753 22233344444444444444333
No 101
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=43.78 E-value=46 Score=27.33 Aligned_cols=84 Identities=17% Similarity=0.305 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Q 032327 2 AFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVM---MENIEKVLDRG 78 (143)
Q Consensus 2 ~fL~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im---~~ni~~~l~Rg 78 (143)
.||+.++.+|....-.. . +..-++ ...|+.+|..|. +..+.++.++..-.....-| .+.++.+++--
T Consensus 248 ~~Ldklh~eit~~LEkI--~-SREK~l----NnqL~~l~q~fr---~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~ 317 (384)
T KOG0972|consen 248 PYLDKLHKEITKALEKI--A-SREKSL----NNQLASLMQKFR---RATDTLSELREKYKQASVGVSSRTETLDEVMDEI 317 (384)
T ss_pred HHHHHHHHHHHHHHHHH--H-HHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 47888888887665211 1 111223 456677776662 12244444444333333322 22344444333
Q ss_pred HhH-HHHHHhhHHHHHhH
Q 032327 79 EKI-ELLVDKTENLHQQA 95 (143)
Q Consensus 79 e~L-~~L~~ks~~L~~~a 95 (143)
|.+ +.++++-..|++.|
T Consensus 318 E~~KqemEe~G~~msDGa 335 (384)
T KOG0972|consen 318 EQLKQEMEEQGAKMSDGA 335 (384)
T ss_pred HHHHHHHHHhcccccCCc
Confidence 332 34555555566555
No 102
>PHA02557 22 prohead core protein; Provisional
Probab=43.57 E-value=73 Score=25.60 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=56.7
Q ss_pred chHHHHHHHHHhhcCCCCCccCCCCCccchhchhHHHHH-HHhhcChh-HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032327 2 AFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELM-QYCVDHPE-EISKLAKVKAQVSEVKGVMMENIEKVLDRGE 79 (143)
Q Consensus 2 ~fL~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~-~~~n~~~~-~~dki~~~~~~l~ev~~im~~ni~~~l~Rge 79 (143)
.||+.+-++|...-. -.........|..+|-.-|+.+. .++-.-|. ..|.+..+..+|++...-...-++...+..+
T Consensus 91 ~~l~~~~~eW~~ENk-~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e 169 (271)
T PHA02557 91 KYLDHLAKEWLAENK-LAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALEE 169 (271)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888876542 11112222233344544566655 33323454 4589999999999999988888888877777
Q ss_pred hHHHH------HHhhHHHHH
Q 032327 80 KIELL------VDKTENLHQ 93 (143)
Q Consensus 80 ~L~~L------~~ks~~L~~ 93 (143)
.++.+ .+.|.+|.+
T Consensus 170 ~i~~~~r~~i~~e~t~gLtd 189 (271)
T PHA02557 170 YINEVKREVILSEVTKDLTE 189 (271)
T ss_pred HHHHHHHHHHHHHHHcchhH
Confidence 76654 445555654
No 103
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=43.22 E-value=16 Score=30.67 Aligned_cols=13 Identities=15% Similarity=0.399 Sum_probs=9.7
Q ss_pred HHHHHHHHHhccC
Q 032327 126 ALILIIVLSVCHG 138 (143)
Q Consensus 126 ~~~~ii~~~~c~g 138 (143)
||-|+-||++|.|
T Consensus 383 lvGfLcWwf~crg 395 (397)
T PF03302_consen 383 LVGFLCWWFICRG 395 (397)
T ss_pred HHHHHhhheeecc
Confidence 4457788999965
No 104
>PF15339 Afaf: Acrosome formation-associated factor
Probab=42.41 E-value=45 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.644 Sum_probs=14.7
Q ss_pred HhHHHHHHHH-HHHHHHHHHHHHhcc
Q 032327 113 NMKIKLIVLG-ILIALILIIVLSVCH 137 (143)
Q Consensus 113 ~~k~~iii~~-iv~~~~~ii~~~~c~ 137 (143)
-.|+.+++++ +.-++++++++.+|.
T Consensus 127 ~~KlkLmLGIsLmTl~lfv~Ll~~c~ 152 (200)
T PF15339_consen 127 ELKLKLMLGISLMTLFLFVILLAFCS 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 344556777778884
No 105
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=42.19 E-value=87 Score=19.69 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=16.9
Q ss_pred HHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032327 96 QDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVL 133 (143)
Q Consensus 96 ~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~~ 133 (143)
..|-+.|++=-|.-..+-.|...+.++++-++-++|.+
T Consensus 19 ~rvl~~arKP~~eEy~~~aKi~~~Gi~liG~IGfiI~l 56 (65)
T COG2443 19 RRVLKVARKPDWEEYSKIAKITGLGILLIGIIGFIIYL 56 (65)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444445554444444444444443
No 106
>PTZ00370 STEVOR; Provisional
Probab=41.97 E-value=32 Score=27.91 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=9.5
Q ss_pred hchhHHHHHHHhh
Q 032327 32 FGPKLKELMQYCV 44 (143)
Q Consensus 32 F~~~l~~~~~~~n 44 (143)
=+|.+++.|+.+|
T Consensus 55 NDpemK~i~d~~n 67 (296)
T PTZ00370 55 NDPELKEIIDKMN 67 (296)
T ss_pred CcHHHHHHHHHHh
Confidence 3678888887775
No 107
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=41.73 E-value=51 Score=17.97 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=8.7
Q ss_pred HHHHHHhHHHHHHHHHH
Q 032327 108 KMWLQNMKIKLIVLGIL 124 (143)
Q Consensus 108 ~~~wk~~k~~iii~~iv 124 (143)
+.+.+-+++..++++++
T Consensus 2 r~~~~~H~W~Gl~~g~~ 18 (37)
T PF13706_consen 2 RILRKLHRWLGLILGLL 18 (37)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34445556655555544
No 108
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=41.70 E-value=53 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=10.4
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 032327 109 MWLQNMKIKLIVLGILIALI 128 (143)
Q Consensus 109 ~~wk~~k~~iii~~iv~~~~ 128 (143)
.+||+++++++++++++++.
T Consensus 16 ~l~r~~~~ill~~ll~~~~a 35 (226)
T TIGR01006 16 KLWKRKLLILIVALIFLIIS 35 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666555554444333
No 109
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=41.39 E-value=56 Score=17.30 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=8.3
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 032327 107 RKMWLQNMKIKLIVLGIL 124 (143)
Q Consensus 107 ~~~~wk~~k~~iii~~iv 124 (143)
|+.|++-+++..++++++
T Consensus 2 r~~~~~~H~~~g~~~~~~ 19 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIF 19 (34)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444455544444433
No 110
>PF07296 TraP: TraP protein; InterPro: IPR009913 This family consists of several bacterial conjugative transfer TraP proteins from Escherichia coli and Salmonella typhimurium. TraP appears to play a minor role in conjugation and may interact with TraB, which varies in sequence along with TraP, in order to stabilise the proposed transmembrane complex formed by the tra operon products [].
Probab=41.35 E-value=1.5e+02 Score=22.76 Aligned_cols=45 Identities=7% Similarity=0.194 Sum_probs=32.9
Q ss_pred hhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032327 87 KTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 132 (143)
Q Consensus 87 ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~ 132 (143)
.+.++...|..| .-|.-|++-.|.=+|-++.=++-..++++++.|
T Consensus 5 ~~~~~a~~a~~~-~Va~vLRWl~W~vky~VI~PlATmaLmalfVlw 49 (202)
T PF07296_consen 5 MSSRQAGHALRY-VVARVLRWLFWCVKYAVIWPLATMALMALFVLW 49 (202)
T ss_pred hhhHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667776 568899999998877777667777777677766
No 111
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=41.07 E-value=38 Score=22.85 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=22.0
Q ss_pred HHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032327 96 QDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 131 (143)
Q Consensus 96 ~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii 131 (143)
.+|-..+-.....-.|||+-+.+...++.+++.++.
T Consensus 34 ~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~ 69 (103)
T PF06422_consen 34 DDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLA 69 (103)
T ss_pred HHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 345555556666778999887766655544433333
No 112
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=40.86 E-value=1.4e+02 Score=21.69 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=3.8
Q ss_pred HHHHHHHhhc
Q 032327 6 RVKDEFVSKY 15 (143)
Q Consensus 6 ei~~~F~~~~ 15 (143)
++-++-..++
T Consensus 7 eiI~~IA~kh 16 (144)
T PF11657_consen 7 EIIAEIARKH 16 (144)
T ss_pred HHHHHHHHHc
Confidence 3333333343
No 113
>PRK09793 methyl-accepting protein IV; Provisional
Probab=40.83 E-value=2.4e+02 Score=24.32 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 032327 37 KELMQYC 43 (143)
Q Consensus 37 ~~~~~~~ 43 (143)
.+..+.|
T Consensus 98 ~~~~~~~ 104 (533)
T PRK09793 98 TTLFKSF 104 (533)
T ss_pred HHHHHHH
Confidence 3334444
No 114
>COG5547 Small integral membrane protein [Function unknown]
Probab=40.47 E-value=42 Score=20.67 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHH
Q 032327 110 WLQNMKIKLIVLGILI 125 (143)
Q Consensus 110 ~wk~~k~~iii~~iv~ 125 (143)
|.+.+|+-++-+++.+
T Consensus 3 flk~fkypIIgglvgl 18 (62)
T COG5547 3 FLKKFKYPIIGGLVGL 18 (62)
T ss_pred HHHHhccchHHHHHHH
Confidence 5667776665544433
No 115
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=39.97 E-value=58 Score=25.34 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 032327 102 GTKMRRKMWLQNMKIKLIVLGILIALI 128 (143)
Q Consensus 102 a~~l~~~~~wk~~k~~iii~~iv~~~~ 128 (143)
.++.-..+|.+.+|.+.+++++++++.
T Consensus 22 ~~~~~~~~~~k~~r~~Al~alil~i~a 48 (218)
T PF10039_consen 22 NKKGVFRMWRKYKRAIALAALILFILA 48 (218)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333455555555555555444433
No 116
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.88 E-value=1.5e+02 Score=23.00 Aligned_cols=20 Identities=25% Similarity=0.669 Sum_probs=13.1
Q ss_pred HhHHHHHhhhHHHHHH-HHHH
Q 032327 93 QQAQDFRSTGTKMRRK-MWLQ 112 (143)
Q Consensus 93 ~~a~~F~~~a~~l~~~-~~wk 112 (143)
..-..|+..|...+.+ |||-
T Consensus 167 ~RE~~FR~tSES~NsRvm~Ws 187 (215)
T KOG1690|consen 167 EREETFRDTSESANSRVMWWS 187 (215)
T ss_pred HHHHHHHhhhhhhcceeeehh
Confidence 3346788888777754 6763
No 117
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=39.28 E-value=41 Score=30.57 Aligned_cols=29 Identities=14% Similarity=0.574 Sum_probs=21.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 032327 109 MWLQNMKIKLIVLGILIALILIIVLSVCH 137 (143)
Q Consensus 109 ~~wk~~k~~iii~~iv~~~~~ii~~~~c~ 137 (143)
.|..--.|...|+++++|++.++|+.+|.
T Consensus 677 ~w~~~~w~~v~i~gi~~i~~m~~fik~~a 705 (764)
T KOG3658|consen 677 EWIVLNWLAVNIVGIVLIVLMAFFIKICA 705 (764)
T ss_pred HHHHhhhHHhHhHHHHHHHHHHHhhhheE
Confidence 45555556667778888888888888883
No 118
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=38.66 E-value=1.3e+02 Score=20.85 Aligned_cols=50 Identities=14% Similarity=0.345 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh----hHhHHHHHHhhHHHHHhHHHHHh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDR----GEKIELLVDKTENLHQQAQDFRS 100 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~R----ge~L~~L~~ks~~L~~~a~~F~~ 100 (143)
.++..++.+++++++-|++.-++.-.. ..++|+|+++...|+.....++.
T Consensus 8 ~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~ 61 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKA 61 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 345566666777776666665544321 23566666666666554444443
No 119
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.19 E-value=94 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHh
Q 032327 59 QVSEVKGVMMENIEKVLDRGEK 80 (143)
Q Consensus 59 ~l~ev~~im~~ni~~~l~Rge~ 80 (143)
.++-..+.|.++||..|+..+.
T Consensus 134 ~Mdm~~Emm~daIDdal~~~ed 155 (224)
T KOG3230|consen 134 IMDMKEEMMDDAIDDALGDDED 155 (224)
T ss_pred HHHHHHHHHHHHHHHhhcccch
Confidence 4667788999999999964443
No 120
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=37.96 E-value=74 Score=25.22 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 032327 102 GTKMRRKMWLQNMKIKLIVLGILIALIL 129 (143)
Q Consensus 102 a~~l~~~~~wk~~k~~iii~~iv~~~~~ 129 (143)
+.+-+--.||..|.+++++++.++++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLLGV 236 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556899999988888776544443
No 121
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=37.95 E-value=1.4e+02 Score=20.74 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=12.4
Q ss_pred HHHhhhHHHHHHHHHHHhHHHHHH
Q 032327 97 DFRSTGTKMRRKMWLQNMKIKLIV 120 (143)
Q Consensus 97 ~F~~~a~~l~~~~~wk~~k~~iii 120 (143)
...+++++ ++.++++|.++.+.
T Consensus 57 ~~~~k~~~--~~~~i~kyg~~GL~ 78 (121)
T PF06695_consen 57 WLEKKAEK--KSKKIEKYGFWGLA 78 (121)
T ss_pred HHHHHHHH--HHHHHHHHhHHHHH
Confidence 33444444 56677788755443
No 122
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=37.61 E-value=1.7e+02 Score=22.01 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHH
Q 032327 59 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 113 (143)
Q Consensus 59 ~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~ 113 (143)
-+.++-.+|.+.+.++++||...+-+.. .|+.-.+-+++.++|=+
T Consensus 127 ~vk~L~~~mv~Sv~elV~~g~E~~~l~r----------gl~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 127 LVKELLPKMVKSVKELVERGMEVGFLRR----------GLRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHH----------HHHHHHHHHHHHHHHhh
Confidence 4566777799999999999977666654 34444556666666633
No 123
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=37.30 E-value=1.8e+02 Score=22.05 Aligned_cols=12 Identities=33% Similarity=0.764 Sum_probs=3.6
Q ss_pred HHHHHhHHHHHH
Q 032327 109 MWLQNMKIKLIV 120 (143)
Q Consensus 109 ~~wk~~k~~iii 120 (143)
.|..-+|+.+++
T Consensus 152 ~W~~~Iki~i~i 163 (204)
T PF00517_consen 152 KWLWYIKIFIMI 163 (204)
T ss_dssp HHHHHHHH----
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 124
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.03 E-value=1.3e+02 Score=21.74 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=18.4
Q ss_pred HHHHhhhHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Q 032327 96 QDFRSTGTKMRRKMWLQNMK-IKLIVLGILIALILIIV 132 (143)
Q Consensus 96 ~~F~~~a~~l~~~~~wk~~k-~~iii~~iv~~~~~ii~ 132 (143)
..+...|..+-+++.|..-+ .|++--.++++++-+|+
T Consensus 64 ~~~~~~av~~~kk~~~fsg~a~Wi~tTt~lIL~vP~i~ 101 (136)
T KOG4111|consen 64 GATAGDAVFVVKKLYSFSGKAAWIATTTFLILVVPLIF 101 (136)
T ss_pred hhcchhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 33334444444555554443 55555555555555554
No 125
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=36.93 E-value=1.2e+02 Score=19.60 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMEN--IEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKM 105 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~n--i~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l 105 (143)
+.|.+...++.+..++-..+ ++..- --.+|..+..+-..+.......++++.++
T Consensus 35 ~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 35 QQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555555444422211 22222 44455555555555555555555555444
No 126
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=36.93 E-value=81 Score=17.85 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhH
Q 032327 64 KGVMMENIEKVLDRGEKIELLVDKTE 89 (143)
Q Consensus 64 ~~im~~ni~~~l~Rge~L~~L~~ks~ 89 (143)
.+.+.+|-..+|...+-++.++++-+
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie 34 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIE 34 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 45667777777777777777777654
No 127
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=36.85 E-value=63 Score=21.95 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=10.2
Q ss_pred HHHHHHhHHHHHHHHHH
Q 032327 108 KMWLQNMKIKLIVLGIL 124 (143)
Q Consensus 108 ~~~wk~~k~~iii~~iv 124 (143)
++.|+.+++.++++++.
T Consensus 2 ~~~~~~~~~~ii~~~l~ 18 (103)
T PRK14125 2 KLKESKIHVSIFFVLTA 18 (103)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 46677777666544443
No 128
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.79 E-value=2e+02 Score=22.36 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HhHHHHHHh---hHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRG--------EKIELLVDK---TENLHQQAQDFRSTGTKMRRKMWLQNMKIKLI 119 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rg--------e~L~~L~~k---s~~L~~~a~~F~~~a~~l~~~~~wk~~k~~ii 119 (143)
.=|+++++.-.+++. ++|+.++.+-- ++|+++-.+ .+.|+..|..+...|++-+....-=|.+..+.
T Consensus 118 ~~IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~ 195 (216)
T KOG0862|consen 118 TFIQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIR 195 (216)
T ss_pred HHHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHH
Confidence 457788888888865 45544443221 334444444 44455677778777766665554445544333
No 129
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=36.36 E-value=69 Score=19.80 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=7.6
Q ss_pred HHHHhHHHHHHHHH
Q 032327 110 WLQNMKIKLIVLGI 123 (143)
Q Consensus 110 ~wk~~k~~iii~~i 123 (143)
|...|.++++++++
T Consensus 3 WladYWWiiLl~lv 16 (63)
T PF13980_consen 3 WLADYWWIILLILV 16 (63)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666444333
No 130
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.26 E-value=27 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 032327 105 MRRKMWLQNMKIKLIVLGILIALIL 129 (143)
Q Consensus 105 l~~~~~wk~~k~~iii~~iv~~~~~ 129 (143)
+++|...||..+|+-++..+++++.
T Consensus 2 INwKvR~kN~~~w~ali~~i~l~vq 26 (84)
T PF04531_consen 2 INWKVRFKNKAFWVALISAILLLVQ 26 (84)
T ss_pred CchhhcccCHHHHHHHHHHHHHHHH
Confidence 3456666777777766665554443
No 131
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=36.20 E-value=41 Score=16.89 Aligned_cols=10 Identities=40% Similarity=0.610 Sum_probs=6.6
Q ss_pred HHHHHHHhcc
Q 032327 128 ILIIVLSVCH 137 (143)
Q Consensus 128 ~~ii~~~~c~ 137 (143)
+....++.||
T Consensus 7 ~~~~~LsgCG 16 (24)
T PF13627_consen 7 ALALALSGCG 16 (24)
T ss_pred HHHHHHHhcc
Confidence 3445578997
No 132
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=36.06 E-value=1.7e+02 Score=21.34 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=4.6
Q ss_pred hHHHHHHHH
Q 032327 3 FLERVKDEF 11 (143)
Q Consensus 3 fL~ei~~~F 11 (143)
||+++.+..
T Consensus 6 fL~~L~~~L 14 (181)
T PF08006_consen 6 FLNELEKYL 14 (181)
T ss_pred HHHHHHHHH
Confidence 555555544
No 133
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=36.05 E-value=63 Score=26.72 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVM 67 (143)
Q Consensus 51 dki~~~~~~l~ev~~im 67 (143)
|.+..++.+++.++.+|
T Consensus 230 ~eL~~iqaqL~tvks~m 246 (372)
T COG3524 230 DELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67788888888888888
No 134
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=36.00 E-value=42 Score=28.35 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=14.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 032327 106 RRKMWLQNMKIKLIVLGILIA 126 (143)
Q Consensus 106 ~~~~~wk~~k~~iii~~iv~~ 126 (143)
+++-||.++...+++.+++++
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL 314 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLL 314 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHH
Confidence 456799999877765554433
No 135
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.69 E-value=45 Score=22.40 Aligned_cols=17 Identities=41% Similarity=0.399 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032327 115 KIKLIVLGILIALILII 131 (143)
Q Consensus 115 k~~iii~~iv~~~~~ii 131 (143)
|..++++++++++++|.
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444554444444443
No 136
>PHA03011 hypothetical protein; Provisional
Probab=35.24 E-value=1.5e+02 Score=20.41 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=39.0
Q ss_pred chhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHH
Q 032327 33 GPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 91 (143)
Q Consensus 33 ~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L 91 (143)
...+.++..+||. -.|...-+..+..+...++++|.+.+.--...+|.|.+.-.++
T Consensus 63 ~e~ldeL~~qYN~---L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 63 IEILDELIAQYNE---LLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 3456667777752 2366777888888888888998888877666677666554443
No 137
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=35.12 E-value=1.2e+02 Score=19.75 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=13.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 032327 106 RRKMWLQNMKIKLIVLGILIALIL 129 (143)
Q Consensus 106 ~~~~~wk~~k~~iii~~iv~~~~~ 129 (143)
++..|-+|.+++.++.++=.++.+
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvsf 26 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVSF 26 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777776665544333333
No 138
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=35.06 E-value=3.7e+02 Score=24.83 Aligned_cols=85 Identities=13% Similarity=0.239 Sum_probs=44.5
Q ss_pred CCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhHHHHHH---hhHHHHHhHHHH
Q 032327 23 APANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR-GEKIELLVD---KTENLHQQAQDF 98 (143)
Q Consensus 23 ~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~R-ge~L~~L~~---ks~~L~~~a~~F 98 (143)
+++.++...|...+++.+..+. +.....-..+++.|++.|-.+....++.+-+. .+++..+.. ..+......+-|
T Consensus 649 dkeralk~q~~~~~~kkLq~~~-~~h~a~cs~qi~~El~~vfa~l~r~v~~~~~~~~d~~~~~~~~le~lds~q~~~K~~ 727 (749)
T KOG0448|consen 649 DKERALKVQFVNHLKKKLQEFD-DSHTANCSHQIRQELRTVFAILCRTVDRVEEQMRDDLLATKKQLESLDSIQSRLKFF 727 (749)
T ss_pred CchhhhHHHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888776652 22222334566666666666666655433211 111111111 333444555666
Q ss_pred HhhhHHHHHH
Q 032327 99 RSTGTKMRRK 108 (143)
Q Consensus 99 ~~~a~~l~~~ 108 (143)
+..|..+.+.
T Consensus 728 ~~ka~~l~~e 737 (749)
T KOG0448|consen 728 RSKALKLEYE 737 (749)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 139
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.93 E-value=51 Score=26.76 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEK 73 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~ 73 (143)
+.+++++.|+.|.=+-|--+=..
T Consensus 103 e~~~klEKel~e~~~~~fg~e~~ 125 (295)
T TIGR01478 103 EPMSTIEKELLEKYEEMFGDESH 125 (295)
T ss_pred chhhHHHHHHHHHHHHHhCCccc
Confidence 55677777777777766655444
No 140
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=34.85 E-value=1.8e+02 Score=21.33 Aligned_cols=14 Identities=7% Similarity=0.354 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHH
Q 032327 100 STGTKMRRKMWLQN 113 (143)
Q Consensus 100 ~~a~~l~~~~~wk~ 113 (143)
....+++.-.-|+.
T Consensus 80 t~gERl~allsWrd 93 (156)
T PF08372_consen 80 TQGERLQALLSWRD 93 (156)
T ss_pred HHHHHHHHhhccCC
Confidence 33444554455543
No 141
>PHA03386 P10 fibrous body protein; Provisional
Probab=34.57 E-value=1.2e+02 Score=20.39 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGV 66 (143)
Q Consensus 51 dki~~~~~~l~ev~~i 66 (143)
+|+..+|.+|++++.-
T Consensus 19 ~KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 19 TKVDALQTQLNGLEED 34 (94)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 7888899999988743
No 142
>PF15102 TMEM154: TMEM154 protein family
Probab=34.53 E-value=10 Score=27.68 Aligned_cols=9 Identities=22% Similarity=0.453 Sum_probs=4.2
Q ss_pred HHHHhccCC
Q 032327 131 IVLSVCHGF 139 (143)
Q Consensus 131 i~~~~c~gf 139 (143)
+++.+|.-+
T Consensus 72 Ll~vV~lv~ 80 (146)
T PF15102_consen 72 LLSVVCLVI 80 (146)
T ss_pred HHHHHHhee
Confidence 334456544
No 143
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=34.49 E-value=66 Score=26.88 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=10.8
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 032327 108 KMWLQNMKIKLIVLGILIA 126 (143)
Q Consensus 108 ~~~wk~~k~~iii~~iv~~ 126 (143)
..+|++.++++++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~~~~ 52 (377)
T PRK10381 34 SVLWKAKKTIIAITFAFAC 52 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667776666655544433
No 144
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=34.26 E-value=80 Score=20.15 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=17.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 032327 109 MWLQNMKIKLIVLGILIALILIIVL 133 (143)
Q Consensus 109 ~~wk~~k~~iii~~iv~~~~~ii~~ 133 (143)
.||+..|..++..+..+++-+.+.+
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~~w 26 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAILW 26 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888877776665554443
No 145
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=34.23 E-value=1.4e+02 Score=22.98 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=35.6
Q ss_pred CCccchhchhHHHHH-HHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 26 NGLNKEFGPKLKELM-QYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKV 74 (143)
Q Consensus 26 ~~l~~~F~~~l~~~~-~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~ 74 (143)
.++ ..|...++.+- ..-++||-+...+.+++.+++++...|.+.++.+
T Consensus 37 ~Gm-~~~~~~~~~i~~~a~~DdPyAD~~L~~iEe~i~~~~~~l~~~~~~l 85 (217)
T PF08900_consen 37 IGM-PGFASRLNRIWRDARQDDPYADWWLLRIEEKINEARQELQELIARL 85 (217)
T ss_pred cCH-HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354 56666666665 3334689888899999999999999888876644
No 146
>PRK13664 hypothetical protein; Provisional
Probab=34.15 E-value=86 Score=19.30 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=7.2
Q ss_pred HHHHhHHHHHHHHH
Q 032327 110 WLQNMKIKLIVLGI 123 (143)
Q Consensus 110 ~wk~~k~~iii~~i 123 (143)
|...|.+++++++.
T Consensus 3 WLadyWWilill~l 16 (62)
T PRK13664 3 WLAKYWWILVLVFL 16 (62)
T ss_pred hHHHHHHHHHHHHH
Confidence 55556666444433
No 147
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=33.79 E-value=36 Score=22.78 Aligned_cols=9 Identities=44% Similarity=1.003 Sum_probs=4.9
Q ss_pred HHHHHHHhc
Q 032327 128 ILIIVLSVC 136 (143)
Q Consensus 128 ~~ii~~~~c 136 (143)
+.||.+.+|
T Consensus 46 l~VilwfvC 54 (94)
T PF05393_consen 46 LLVILWFVC 54 (94)
T ss_pred HHHHHHHHH
Confidence 444555667
No 148
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=33.51 E-value=3.4e+02 Score=23.92 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 52 KLAKVKAQVSEVKGVMMENIEKVLD 76 (143)
Q Consensus 52 ki~~~~~~l~ev~~im~~ni~~~l~ 76 (143)
-++-++.++.++++-|.+..+..++
T Consensus 128 tv~ti~~qv~~~~~~l~~~~~~~l~ 152 (526)
T KOG4433|consen 128 TVSTIDAQVSDTAEGLNNTAEQLLE 152 (526)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666666655444443
No 149
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=33.40 E-value=1e+02 Score=20.72 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhHhHHHHHHh--hHHHHHhHHHHHhhhHHHHH
Q 032327 67 MMENIEKVLDRGEKIELLVDK--TENLHQQAQDFRSTGTKMRR 107 (143)
Q Consensus 67 m~~ni~~~l~Rge~L~~L~~k--s~~L~~~a~~F~~~a~~l~~ 107 (143)
+...+..+|.++..|+.+..- ++.|+.........++.++.
T Consensus 3 v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 3 VAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 345666777777777777775 66677777777777777765
No 150
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=33.38 E-value=92 Score=23.83 Aligned_cols=6 Identities=0% Similarity=0.058 Sum_probs=2.6
Q ss_pred HHHhHH
Q 032327 111 LQNMKI 116 (143)
Q Consensus 111 wk~~k~ 116 (143)
++.-++
T Consensus 19 ~k~~~~ 24 (200)
T PRK10617 19 RTPSRL 24 (200)
T ss_pred HhhHHH
Confidence 444444
No 151
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=33.29 E-value=59 Score=23.54 Aligned_cols=13 Identities=38% Similarity=0.365 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 032327 120 VLGILIALILIIV 132 (143)
Q Consensus 120 i~~iv~~~~~ii~ 132 (143)
|+++|+++.++|+
T Consensus 125 i~g~ll~i~~giy 137 (145)
T PF10661_consen 125 IGGILLAICGGIY 137 (145)
T ss_pred HHHHHHHHHHHHH
Confidence 3334333333333
No 152
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.74 E-value=2.5e+02 Score=22.18 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=20.1
Q ss_pred hhchhHHHHH-HHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 31 EFGPKLKELM-QYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVL 75 (143)
Q Consensus 31 ~F~~~l~~~~-~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l 75 (143)
.|+..++... ++||+-.+-..++++.+.+.+....-+.+..+.+-
T Consensus 30 ~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~ 75 (246)
T KOG4657|consen 30 KIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELV 75 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 33332222224555555555555555555444433
No 153
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.53 E-value=2.5e+02 Score=22.07 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 032327 121 LGILIALILIIVL 133 (143)
Q Consensus 121 ~~iv~~~~~ii~~ 133 (143)
++.+|++++++|+
T Consensus 217 Vis~C~llllfy~ 229 (231)
T KOG3208|consen 217 VISVCTLLLLFYW 229 (231)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 154
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=32.52 E-value=35 Score=20.03 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=12.1
Q ss_pred HHhHHHHHHH-HHHHHHHHHHHH-Hhc
Q 032327 112 QNMKIKLIVL-GILIALILIIVL-SVC 136 (143)
Q Consensus 112 k~~k~~iii~-~iv~~~~~ii~~-~~c 136 (143)
|.++|+++++ ++++++++...+ +.|
T Consensus 2 kk~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 2 KKFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred ceeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555543 344555544333 566
No 155
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.41 E-value=51 Score=25.46 Aligned_cols=25 Identities=32% Similarity=0.073 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 032327 108 KMWLQNMKIKLIVLGILIALILIIV 132 (143)
Q Consensus 108 ~~~wk~~k~~iii~~iv~~~~~ii~ 132 (143)
+.||+..-.++++++++.+..++-|
T Consensus 15 k~wwkeNGk~li~gviLg~~~lfGW 39 (207)
T COG2976 15 KDWWKENGKALIVGVILGLGGLFGW 39 (207)
T ss_pred HHHHHHCCchhHHHHHHHHHHHHHH
Confidence 4688776666655555544444443
No 156
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=32.25 E-value=65 Score=22.92 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 032327 109 MWLQNMKIKLIVLGILIALILIIVLS 134 (143)
Q Consensus 109 ~~wk~~k~~iii~~iv~~~~~ii~~~ 134 (143)
.|-=--||+++|++.-+++++.+++.
T Consensus 18 lw~iItKWyL~IavaSlI~lyy~v~g 43 (139)
T PF10875_consen 18 LWSIITKWYLIIAVASLITLYYTVLG 43 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444578998888887778877753
No 157
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=32.13 E-value=1.6e+02 Score=21.87 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=4.0
Q ss_pred HHHHHHHHhH
Q 032327 106 RRKMWLQNMK 115 (143)
Q Consensus 106 ~~~~~wk~~k 115 (143)
|.||.-|-++
T Consensus 24 r~k~~~R~i~ 33 (161)
T PHA02673 24 RQKAIRRYIK 33 (161)
T ss_pred HHHHHHHHHH
Confidence 3344434333
No 158
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=31.64 E-value=2e+02 Score=20.64 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=2.6
Q ss_pred hHHHHHh
Q 032327 94 QAQDFRS 100 (143)
Q Consensus 94 ~a~~F~~ 100 (143)
.|..|.+
T Consensus 109 ~ae~~eR 115 (143)
T PF12718_consen 109 KAEHFER 115 (143)
T ss_pred HhHHHHH
Confidence 3333333
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.30 E-value=2.7e+02 Score=25.49 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhHhHHH
Q 032327 64 KGVMMENIEKVLDRGEKIEL 83 (143)
Q Consensus 64 ~~im~~ni~~~l~Rge~L~~ 83 (143)
.+.+.+.++.+.+|++.|..
T Consensus 595 ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 595 AEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445556666655554443
No 160
>PF10372 YojJ: Bacterial membrane-spanning protein N-terminus; InterPro: IPR019457 This entry is found at the N terminus of a family of putative membrane-spanning bacterial proteins. These proteins often contain IPR003390 from INTERPRO towards the C terminus. ; PDB: 2FB5_A.
Probab=31.17 E-value=1.4e+02 Score=18.94 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=18.4
Q ss_pred hHHHHHHhhHHHHHhHHHHHhhh
Q 032327 80 KIELLVDKTENLHQQAQDFRSTG 102 (143)
Q Consensus 80 ~L~~L~~ks~~L~~~a~~F~~~a 102 (143)
.+|.+.++-.+++..|..|+=++
T Consensus 43 e~e~i~~~f~~~q~~AssyYLq~ 65 (70)
T PF10372_consen 43 EFEEIREKFLDIQTLASSYYLQC 65 (70)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888998888887654
No 161
>PTZ00370 STEVOR; Provisional
Probab=30.66 E-value=57 Score=26.53 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032327 52 KLAKVKAQVSEVKGVMMEN 70 (143)
Q Consensus 52 ki~~~~~~l~ev~~im~~n 70 (143)
..++++.|+-|.=+-|--+
T Consensus 103 ~k~klEKel~e~~ee~fg~ 121 (296)
T PTZ00370 103 PMSTLEKELLETYEEMFGD 121 (296)
T ss_pred hhHHHHHHHHHHHHHHhcC
Confidence 3444444444444444433
No 162
>PHA03164 hypothetical protein; Provisional
Probab=30.63 E-value=80 Score=20.60 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032327 116 IKLIVLGILIALILIIV 132 (143)
Q Consensus 116 ~~iii~~iv~~~~~ii~ 132 (143)
..++.++++..++++|+
T Consensus 60 FlvLtgLaIamILfiif 76 (88)
T PHA03164 60 FLVLTGLAIAMILFIIF 76 (88)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33333344444444444
No 163
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=30.58 E-value=1.7e+02 Score=19.64 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032327 5 ERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 79 (143)
Q Consensus 5 ~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge 79 (143)
++.+++|..-+.... .+ ..+....+.+..+.|+ - .+.+.....++..-+.-+.+|+..++.+=.
T Consensus 1 eea~~ef~~I~~n~~------lt-~~e~~~~l~~Wa~~~~---v-~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~ 64 (113)
T PF02520_consen 1 EEARKEFFQIFQNPN------LT-KAEIEEQLDEWAEKYG---V-QDQYNEFKAQVQAQKEEVRKNVTAVISNLS 64 (113)
T ss_pred ChHHHHHHHHHcCCC------CC-HHHHHHHHHHHHHHCC---c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788887774211 12 1344556666666663 2 278888888888888888888887776543
No 164
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=30.28 E-value=90 Score=25.59 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=10.3
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 032327 107 RKMWLQNMKIKLIVLGILI 125 (143)
Q Consensus 107 ~~~~wk~~k~~iii~~iv~ 125 (143)
....|+..+++++++++++
T Consensus 24 ~~~L~r~k~~Ii~~~~~~~ 42 (325)
T PRK15471 24 LVQLWRGKMTIIISVIVAI 42 (325)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 3466766665555444433
No 165
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.92 E-value=3.4e+02 Score=22.91 Aligned_cols=10 Identities=10% Similarity=0.471 Sum_probs=4.3
Q ss_pred HhhHhHHHHH
Q 032327 76 DRGEKIELLV 85 (143)
Q Consensus 76 ~Rge~L~~L~ 85 (143)
||+++|+..-
T Consensus 133 E~~G~L~~~l 142 (397)
T COG1459 133 ERSGNLDEVL 142 (397)
T ss_pred HhcCCHHHHH
Confidence 4444444433
No 166
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.89 E-value=2.8e+02 Score=21.82 Aligned_cols=57 Identities=9% Similarity=0.095 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHH-----HHHHHHHHhHHHHHHHH
Q 032327 66 VMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKM-----RRKMWLQNMKIKLIVLG 122 (143)
Q Consensus 66 im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l-----~~~~~wk~~k~~iii~~ 122 (143)
.+.-+++.+.++-+++..=-.++..+++-+..+..+=+.| .|--||.-.-..+++++
T Consensus 150 ~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v 211 (236)
T KOG3287|consen 150 QLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILV 211 (236)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHH
Confidence 3334445555555555555556666666666555444433 34467766665554443
No 167
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.61 E-value=1.8e+02 Score=19.59 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=11.6
Q ss_pred hHhHHHHHHhhHHHHHhHHHHHhhhHHH
Q 032327 78 GEKIELLVDKTENLHQQAQDFRSTGTKM 105 (143)
Q Consensus 78 ge~L~~L~~ks~~L~~~a~~F~~~a~~l 105 (143)
.+-+.+|.++-+.+......+.++-..+
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l 93 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERL 93 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333333
No 168
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=29.61 E-value=1.6e+02 Score=21.97 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=24.9
Q ss_pred chhHHHHHHHhh---cChhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 33 GPKLKELMQYCV---DHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 76 (143)
Q Consensus 33 ~~~l~~~~~~~n---~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~ 76 (143)
-|.+.++++.|. +.|...+.+.+...+.+++-+.+.+++++.++
T Consensus 135 Lp~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~ 181 (199)
T PF10112_consen 135 LPTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLD 181 (199)
T ss_pred hhHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666663 23333355566666666666666666655554
No 169
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=29.22 E-value=2.9e+02 Score=21.82 Aligned_cols=50 Identities=22% Similarity=0.112 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST 101 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~ 101 (143)
..+..+.+.+..-+++ .+--++.+..-...++|.+++......|+.|..+
T Consensus 71 ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ 120 (236)
T KOG3003|consen 71 AEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQ 120 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555 5555666555556667777777777666666443
No 170
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=29.04 E-value=1.9e+02 Score=24.06 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=20.1
Q ss_pred hhHhHHHHHHhhHHHHHhHHHHHhh-------hHHHHHHHHHHHhHHHHH
Q 032327 77 RGEKIELLVDKTENLHQQAQDFRST-------GTKMRRKMWLQNMKIKLI 119 (143)
Q Consensus 77 Rge~L~~L~~ks~~L~~~a~~F~~~-------a~~l~~~~~wk~~k~~ii 119 (143)
=+++++.++++.+.+...-....+. ...+..+..+.|.+++.+
T Consensus 149 ~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGi 198 (370)
T PF02994_consen 149 LEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGI 198 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES-
T ss_pred HHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEec
Confidence 3455555555555555544333332 223334445555665544
No 171
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=28.98 E-value=3.9e+02 Score=23.21 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 032327 53 LAKVKAQVSEVKGVM 67 (143)
Q Consensus 53 i~~~~~~l~ev~~im 67 (143)
+..++...+.-...+
T Consensus 122 ~~~~~~~~~~y~~~~ 136 (554)
T PRK15041 122 AAEIKRNYDIYHNAL 136 (554)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666655554443
No 172
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=28.69 E-value=1.4e+02 Score=19.69 Aligned_cols=10 Identities=0% Similarity=0.481 Sum_probs=5.5
Q ss_pred HHHHHHHhHH
Q 032327 107 RKMWLQNMKI 116 (143)
Q Consensus 107 ~~~~wk~~k~ 116 (143)
++...|.+-+
T Consensus 29 N~sfirdFvL 38 (84)
T PF06143_consen 29 NRSFIRDFVL 38 (84)
T ss_pred ChHHHHHHHH
Confidence 3455566655
No 173
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=28.13 E-value=1.2e+02 Score=25.57 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=27.1
Q ss_pred hHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHH
Q 032327 80 KIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLI 119 (143)
Q Consensus 80 ~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~ii 119 (143)
..|+..+|+.+---.++.|-..-+.-+|.+|-|.+++-++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (379)
T PRK12430 102 SKDEVIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRII 141 (379)
T ss_pred chhHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666777776677777788777777665
No 174
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=27.96 E-value=93 Score=25.70 Aligned_cols=19 Identities=0% Similarity=-0.162 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 032327 108 KMWLQNMKIKLIVLGILIA 126 (143)
Q Consensus 108 ~~~wk~~k~~iii~~iv~~ 126 (143)
+..|++.+++++++++.++
T Consensus 17 ~~Lw~~k~~Ii~~t~~~~~ 35 (342)
T PRK11638 17 RTLWAGKLWIIGMALLFAL 35 (342)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4667776666655554443
No 175
>COG4499 Predicted membrane protein [Function unknown]
Probab=27.89 E-value=1.2e+02 Score=25.81 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=16.4
Q ss_pred HHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 032327 97 DFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIVL 133 (143)
Q Consensus 97 ~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~~ 133 (143)
...++-..+. +..|.-+||..+ |+++++++.+||+
T Consensus 204 ~~~kn~a~Vp-K~k~~ifk~~gi-Gliillvl~li~~ 238 (434)
T COG4499 204 KINKNYAFVP-KKKYTIFKYFGI-GLIILLVLLLIYF 238 (434)
T ss_pred HHhcceeecc-cccceehhhHHH-hHHHHHHHHHHHH
Confidence 3333333443 334566776654 3344444444443
No 176
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=27.83 E-value=2.1e+02 Score=19.90 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHH
Q 032327 51 SKLAKVKAQVSEVK----GVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 109 (143)
Q Consensus 51 dki~~~~~~l~ev~----~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~ 109 (143)
..+.+++..++++. ..+.+|-+.+++.-..++.++.-.+.+...-........+++.+.
T Consensus 33 ~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 33 TPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544 455566677888777777777777777777777766666666543
No 177
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=27.65 E-value=3.5e+02 Score=24.00 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFR 99 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~ 99 (143)
+.+...++++++++.-=.+|...+.+.-+.++.|.............|+
T Consensus 191 ~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777774334455666777777766666655554444433
No 178
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.24 E-value=1.5e+02 Score=19.55 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=16.3
Q ss_pred HHHHHHhhHHHHHhHHHHHhhhHHHHHH
Q 032327 81 IELLVDKTENLHQQAQDFRSTGTKMRRK 108 (143)
Q Consensus 81 L~~L~~ks~~L~~~a~~F~~~a~~l~~~ 108 (143)
|+.|++|++.|......+-...++.|..
T Consensus 42 LD~LE~rnD~l~~~L~~LLesnrq~R~e 69 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQELLESNRQIRLE 69 (83)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555555543
No 179
>PRK11901 hypothetical protein; Reviewed
Probab=27.10 E-value=70 Score=26.43 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 032327 120 VLGILIALILI 130 (143)
Q Consensus 120 i~~iv~~~~~i 130 (143)
++++|+++++|
T Consensus 42 iGilVLlLLIi 52 (327)
T PRK11901 42 IGILVLLLLII 52 (327)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 180
>PRK09697 protein secretion protein GspB; Provisional
Probab=27.07 E-value=56 Score=22.95 Aligned_cols=26 Identities=4% Similarity=0.204 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 032327 109 MWLQNMKIKLIVLGILIALILIIVLSVC 136 (143)
Q Consensus 109 ~~wk~~k~~iii~~iv~~~~~ii~~~~c 136 (143)
||-++.. ..|+.++++.++.+|...|
T Consensus 19 ~~~~~~~--~TI~~Vi~L~~~~L~~AG~ 44 (139)
T PRK09697 19 IFSRQKH--STIIYVICLLLICLWFAGM 44 (139)
T ss_pred hhhhhhc--cchHHHHHHHHHHHHHhcc
Confidence 5544443 3345566666777787777
No 181
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=26.63 E-value=55 Score=17.93 Aligned_cols=19 Identities=11% Similarity=0.361 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 032327 50 ISKLAKVKAQVSEVKGVMM 68 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~ 68 (143)
.|+|..+.+++.++.++|.
T Consensus 16 R~NI~~il~~m~~mpgim~ 34 (35)
T PF12579_consen 16 RDNILAILNDMNDMPGIMS 34 (35)
T ss_pred HHHHHHHHHHHHcchhhhc
Confidence 3778888888888887775
No 182
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=26.58 E-value=92 Score=19.57 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 032327 62 EVKGVMMENIEK 73 (143)
Q Consensus 62 ev~~im~~ni~~ 73 (143)
+++.+|.+|+..
T Consensus 10 ~L~~ii~~~~~~ 21 (76)
T PF04155_consen 10 ELRKIILKNMKE 21 (76)
T ss_pred HHHHHHHHHhcc
Confidence 456666666664
No 183
>PF14992 TMCO5: TMCO5 family
Probab=26.49 E-value=3.5e+02 Score=21.91 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=24.1
Q ss_pred hHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 032327 35 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 81 (143)
Q Consensus 35 ~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L 81 (143)
.++.....+- .....+.++.++.+.|+.+-.+-..-+.+=.+.|
T Consensus 117 ~lqql~~~~~---~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L 160 (280)
T PF14992_consen 117 KLQQLLESCA---SQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKL 160 (280)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444545442 1225677777777777777666554444333333
No 184
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=26.19 E-value=2.4e+02 Score=22.04 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHH
Q 032327 68 MENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGIL 124 (143)
Q Consensus 68 ~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv 124 (143)
++.++|++.-|..+.+|+.|..-|=..-..-.+.-|+.=--...+.-|+|..|+=|+
T Consensus 6 hdKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI~ 62 (231)
T PF03238_consen 6 HDKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEIV 62 (231)
T ss_pred hhhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 355777888888888888888877666555544444443446777778777766543
No 185
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=26.15 E-value=2.5e+02 Score=20.01 Aligned_cols=51 Identities=16% Similarity=0.344 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhHHHHHHhhHHHHHhHHHHHh
Q 032327 50 ISKLAKVKAQVSEVKGVMMENIEKVLDR-GEKIELLVDKTENLHQQAQDFRS 100 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~ni~~~l~R-ge~L~~L~~ks~~L~~~a~~F~~ 100 (143)
..+|..++.+++++...|.+.|+.+-++ .+.+..|..+.+.|...-..|..
T Consensus 9 l~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e 60 (149)
T PF07352_consen 9 LRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAE 60 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888998888877643 45667777777777776666644
No 186
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=26.09 E-value=4.2e+02 Score=22.70 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcc
Q 032327 113 NMKIKLIVLGILIALILIIVLSVCH 137 (143)
Q Consensus 113 ~~k~~iii~~iv~~~~~ii~~~~c~ 137 (143)
-|+|++++.++.++++++++++.|+
T Consensus 383 ~F~~vv~~~~~~~~~lf~~i~~~~k 407 (414)
T KOG2662|consen 383 AFKWVVGITFTLCIVLFVVILGYAK 407 (414)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777878888888776663
No 187
>PHA03240 envelope glycoprotein M; Provisional
Probab=26.03 E-value=57 Score=25.58 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 032327 118 LIVLGILIALILIIV 132 (143)
Q Consensus 118 iii~~iv~~~~~ii~ 132 (143)
+|+++++++++++++
T Consensus 216 IiilIIiIiIIIL~c 230 (258)
T PHA03240 216 IFIAIIIIIVIILFF 230 (258)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333443
No 188
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=25.86 E-value=1.1e+02 Score=15.94 Aligned_cols=8 Identities=38% Similarity=0.517 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 032327 115 KIKLIVLG 122 (143)
Q Consensus 115 k~~iii~~ 122 (143)
+..+++..
T Consensus 11 r~~l~~l~ 18 (30)
T PF08525_consen 11 RRALIALS 18 (30)
T ss_pred HHHHHHHH
Confidence 33333333
No 189
>PRK09793 methyl-accepting protein IV; Provisional
Probab=25.86 E-value=3.8e+02 Score=23.06 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=5.4
Q ss_pred HHHhhHHHHHhHHHH
Q 032327 84 LVDKTENLHQQAQDF 98 (143)
Q Consensus 84 L~~ks~~L~~~a~~F 98 (143)
|.+.+++|......|
T Consensus 497 l~~~a~~l~~~v~~F 511 (533)
T PRK09793 497 LANQADHLSSRVAVF 511 (533)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 190
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=25.71 E-value=76 Score=24.63 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=14.6
Q ss_pred hHHHHHHHHHH----HhHHHHHH
Q 032327 102 GTKMRRKMWLQ----NMKIKLIV 120 (143)
Q Consensus 102 a~~l~~~~~wk----~~k~~iii 120 (143)
...+.++.||+ .+|+++.+
T Consensus 95 ~~~fw~k~w~eg~~~~ik~Ylfl 117 (227)
T COG1969 95 IVPFWRKAWWEGVWYQIKWYLFL 117 (227)
T ss_pred hhhhhHHHHHHHHHHHhhhheee
Confidence 34677899999 88888764
No 191
>PHA02898 virion envelope protein; Provisional
Probab=25.56 E-value=1.8e+02 Score=19.52 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=19.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH---HhccC
Q 032327 108 KMWLQNMKIKLIVLGILIALILIIVL---SVCHG 138 (143)
Q Consensus 108 ~~~wk~~k~~iii~~iv~~~~~ii~~---~~c~g 138 (143)
-.-||..-.+..+.++++++-++++. --|+|
T Consensus 41 ~~~wRalSii~FIlgivl~lG~~ifs~y~r~C~~ 74 (92)
T PHA02898 41 DSALRSISIISFILAIILILGIIFFKGYNMFCGG 74 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 45677777777777766665555553 25653
No 192
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=25.36 E-value=1.5e+02 Score=17.21 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKV 74 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~ 74 (143)
..+..+.+-+.++++.|.+.+.++
T Consensus 8 ~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 8 KQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677888888888877654
No 193
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=25.32 E-value=3.4e+02 Score=21.38 Aligned_cols=72 Identities=25% Similarity=0.405 Sum_probs=37.5
Q ss_pred cchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHhhHhHHHHHHhhHHHHH-----hHHHH
Q 032327 29 NKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMM-----ENIEKVLDRGEKIELLVDKTENLHQ-----QAQDF 98 (143)
Q Consensus 29 ~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~-----~ni~~~l~Rge~L~~L~~ks~~L~~-----~a~~F 98 (143)
..+|-..|.+++...+ .+|.+-+..|+....-.. .+.+++-+=.++|+.+..+++.|.. .|...
T Consensus 81 E~e~~~~L~~~i~d~d------rrI~~~k~RL~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~ 154 (254)
T PF03194_consen 81 EREFLRYLQRLIRDCD------RRIERAKERLEQTQEEQAKEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKL 154 (254)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHhCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3456666777665542 345555555544333111 1234455555666666666666663 45555
Q ss_pred HhhhHHHH
Q 032327 99 RSTGTKMR 106 (143)
Q Consensus 99 ~~~a~~l~ 106 (143)
...+.+|+
T Consensus 155 ~~~~e~Lk 162 (254)
T PF03194_consen 155 MEEVEKLK 162 (254)
T ss_pred HHHHHHHH
Confidence 55555554
No 194
>TIGR02509 type_III_yopR type III secretion effector, YopR family. Members of this family are type III secretion system effectors, named differently in different species and designated YopR (Yersinia outer protein R), encoded by the YscH (Yersinia secretion H) gene. This Yops protein is unusual in that it is released to extracellularly rather than injected directly into the target cell as are most Yops.
Probab=25.24 E-value=2.6e+02 Score=20.00 Aligned_cols=78 Identities=13% Similarity=0.348 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhcChhHHh---HHHHHHHHHHH--------HHHHHHHHHH
Q 032327 4 LERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEIS---KLAKVKAQVSE--------VKGVMMENIE 72 (143)
Q Consensus 4 L~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~~~~~~d---ki~~~~~~l~e--------v~~im~~ni~ 72 (143)
+.-+.++....|++.+....+|-. .+.|+.+|..| +|-... -+-++-.++.. +-+..++-+.
T Consensus 38 ~~pv~e~Ll~~F~g~~l~v~p~~D-----~~ELrA~lref--~Plg~q~E~~Ll~~l~~lK~~~~~~~~yL~dL~RrEL~ 110 (131)
T TIGR02509 38 LSPVKERLLGRFGGQQLPVVPPID-----RLELRAMLRQF--DPLGRQQEAALLQLLGKLKSLPQVGMEYLSDLARRELM 110 (131)
T ss_pred HHHHHHHHHHHhcccccCCCCccc-----hHHHHHHHHHh--CccchHHHHHHHHHHHHccCCcccCcHHHHHHHHHHHH
Confidence 445677777788766555554433 37899999776 453322 33333333333 2234444444
Q ss_pred HHHHhhHhHHHHHHhh
Q 032327 73 KVLDRGEKIELLVDKT 88 (143)
Q Consensus 73 ~~l~Rge~L~~L~~ks 88 (143)
-++.+..=.++|..-|
T Consensus 111 tlIp~NgMVdNl~rnS 126 (131)
T TIGR02509 111 TLIPKNGMVDNLMRNS 126 (131)
T ss_pred HHhhhhHHHHHHHhcc
Confidence 4445444444444433
No 195
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=25.08 E-value=2.9e+02 Score=23.94 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHH
Q 032327 53 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKM 105 (143)
Q Consensus 53 i~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l 105 (143)
+.++...++++..+..+|-...-+-..-.+.|.+.++.|......|+-...++
T Consensus 470 ~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk~~~~~~ 522 (554)
T PRK15041 470 IDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQQQQ 522 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 33344444444444444444443434444555555555555555555444433
No 196
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=24.84 E-value=1.3e+02 Score=16.42 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhHh
Q 032327 62 EVKGVMMENIEKVLDRGEK 80 (143)
Q Consensus 62 ev~~im~~ni~~~l~Rge~ 80 (143)
--++-+.+.||..|++|++
T Consensus 9 ~~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 9 FRKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 3455677888889988865
No 197
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.81 E-value=1.2e+02 Score=24.78 Aligned_cols=7 Identities=29% Similarity=0.738 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 032327 126 ALILIIV 132 (143)
Q Consensus 126 ~~~~ii~ 132 (143)
+++++||
T Consensus 273 vIIYLIL 279 (299)
T PF02009_consen 273 VIIYLIL 279 (299)
T ss_pred HHHHHHH
Confidence 3334443
No 198
>PRK07668 hypothetical protein; Validated
Probab=24.53 E-value=3.5e+02 Score=21.52 Aligned_cols=56 Identities=9% Similarity=0.053 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhH
Q 032327 57 KAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 115 (143)
Q Consensus 57 ~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k 115 (143)
++|.+++-+-+.+.+-+--++|...+++-.. +-+.-|+++-+...+ .++-|+++.-
T Consensus 24 eeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~--sPk~yA~EL~~~~~~-~~~~~~~~l~ 79 (254)
T PRK07668 24 EEDIESFLEDAELHLIEGEKDGKTVEDIFGD--SPKEYANELVKEMEV-DRKENIKLIL 79 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHhCC--CHHHHHHHHhcccCC-CcchHHHHHH
Confidence 4456677777777777778889888888876 334445555443322 3344555443
No 199
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.53 E-value=4.1e+02 Score=22.05 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=25.9
Q ss_pred hHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032327 35 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 77 (143)
Q Consensus 35 ~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~R 77 (143)
.+.++...|. |.. .++..++.++++++..+.+.+.++...
T Consensus 269 ~l~~l~~~y~--~~h-P~v~~l~~~i~~l~~~l~~e~~~~~~~ 308 (444)
T TIGR03017 269 KLAELSQRLG--PNH-PQYKRAQAEINSLKSQLNAEIKKVTSS 308 (444)
T ss_pred HHHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555563 222 567788888888888887777666543
No 200
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=24.44 E-value=1.9e+02 Score=24.00 Aligned_cols=64 Identities=9% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHhccC
Q 032327 71 IEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR--KMWLQNMKIKLIVLGILIALILIIVLSVCHG 138 (143)
Q Consensus 71 i~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~--~~~wk~~k~~iii~~iv~~~~~ii~~~~c~g 138 (143)
...-++=+.|.+.|.+|-+-.++....+......=+. --| -++++|++-|++.++=|++..|++
T Consensus 265 ~~~yLdI~~RvnvLN~Rl~vi~d~l~il~e~ln~~~s~~lEW----ivIiLI~~eVllsl~~i~~~~~~~ 330 (331)
T COG1723 265 VREYLDINPRVNVLNRRLEVISDLLDILNEQLNHSHSTRLEW----IVIILIGLEVLLSLYNIIVKYIGA 330 (331)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeEE----EehhHHHHHHHHHHHHHHHHHhcC
Confidence 3445555666667777666666666655443321110 012 123334444445555566666654
No 201
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=24.12 E-value=1.1e+02 Score=20.80 Aligned_cols=20 Identities=15% Similarity=0.095 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 032327 117 KLIVLGILIALILIIVLSVCH 137 (143)
Q Consensus 117 ~iii~~iv~~~~~ii~~~~c~ 137 (143)
++..+++ .+++..+++..||
T Consensus 21 ~faGgll-~~~il~~iLYi~G 40 (96)
T PF13571_consen 21 YFAGGLL-GLFILFVILYIAG 40 (96)
T ss_pred HHHHHHH-HHHHHHHHHHHhc
Confidence 4433333 3334445566665
No 202
>PF15106 TMEM156: TMEM156 protein family
Probab=23.98 E-value=51 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.384 Sum_probs=12.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032327 106 RRKMWLQNMKIKLIVLGILIALILII 131 (143)
Q Consensus 106 ~~~~~wk~~k~~iii~~iv~~~~~ii 131 (143)
+.-++-=.+.||+++.+|.++++++|
T Consensus 168 kn~~CsmKITWYvLVllVfiflii~i 193 (226)
T PF15106_consen 168 KNSTCSMKITWYVLVLLVFIFLIILI 193 (226)
T ss_pred cCceeehhhHHHHHHHHHHHHHHHHH
Confidence 33445444556665555544444333
No 203
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=23.96 E-value=3e+02 Score=20.26 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=12.7
Q ss_pred HhhHhHHHHHHhhHHHHHhHHHH
Q 032327 76 DRGEKIELLVDKTENLHQQAQDF 98 (143)
Q Consensus 76 ~Rge~L~~L~~ks~~L~~~a~~F 98 (143)
++|+.++.+.++-+.|+..-..|
T Consensus 75 ~~a~~~~~~~~R~~~L~~~~~~l 97 (167)
T PF11157_consen 75 ARAESMQATIERYQRLSQQLQAL 97 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444
No 204
>PHA02902 putative IMV membrane protein; Provisional
Probab=23.77 E-value=1.2e+02 Score=19.10 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 032327 118 LIVLGILIALILIIV 132 (143)
Q Consensus 118 iii~~iv~~~~~ii~ 132 (143)
+|++++|+++.++|+
T Consensus 7 vi~~v~v~Ivclliy 21 (70)
T PHA02902 7 VILAVIVIIFCLLIY 21 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 205
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=23.62 E-value=1.7e+02 Score=19.55 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=14.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 032327 109 MWLQNMKIKLIVLGILIALILIIV 132 (143)
Q Consensus 109 ~~wk~~k~~iii~~iv~~~~~ii~ 132 (143)
.-||..-.+..+.++++++.++++
T Consensus 43 ~~wRalSii~FIlG~vl~lGilif 66 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVF 66 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777776666666655554443
No 206
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=23.42 E-value=1.5e+02 Score=21.04 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 032327 107 RKMWLQNMKIKLIVLGILIALI 128 (143)
Q Consensus 107 ~~~~wk~~k~~iii~~iv~~~~ 128 (143)
..-||.+....+.++.+++.++
T Consensus 67 ~~~~~~r~~~~~pl~aLv~gL~ 88 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALVAGLA 88 (131)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 4568888886655555544333
No 207
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=23.33 E-value=82 Score=24.46 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=11.7
Q ss_pred chhchhHHHHHHHhhcChh
Q 032327 30 KEFGPKLKELMQYCVDHPE 48 (143)
Q Consensus 30 ~~F~~~l~~~~~~~n~~~~ 48 (143)
.+|+-.++.+.+-|+.=|.
T Consensus 61 ~sf~lli~a~~Et~~~Lp~ 79 (215)
T PHA02947 61 LSFTLLIKTFKEVISTLPE 79 (215)
T ss_pred HHHHHHHHHHHHHHHhCCH
Confidence 4666667777776654443
No 208
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.29 E-value=5.6e+02 Score=23.15 Aligned_cols=24 Identities=8% Similarity=0.401 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKV 74 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~ 74 (143)
..+..++.++++++.-+.+-++++
T Consensus 316 P~v~~l~~qi~~l~~~i~~e~~~~ 339 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIRSELQKI 339 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667766666655544444
No 209
>PF13675 PilJ: Type IV pili methyl-accepting chemotaxis transducer N-term; PDB: 3EZI_D 3EZH_B.
Probab=23.24 E-value=1.6e+02 Score=19.22 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=2.3
Q ss_pred hhchhHHHHHH
Q 032327 31 EFGPKLKELMQ 41 (143)
Q Consensus 31 ~F~~~l~~~~~ 41 (143)
.|+..+..+..
T Consensus 54 ~f~~~l~~L~~ 64 (112)
T PF13675_consen 54 EFEQSLQALQN 64 (112)
T ss_dssp ------HHHHH
T ss_pred HHHHHHHHHHc
Confidence 44445544443
No 210
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.20 E-value=1.2e+02 Score=20.61 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=7.3
Q ss_pred HHHhHHHHHHHHHHH
Q 032327 111 LQNMKIKLIVLGILI 125 (143)
Q Consensus 111 wk~~k~~iii~~iv~ 125 (143)
..|+.+-+++++++.
T Consensus 76 ~tn~fyGf~igL~i~ 90 (97)
T PF05440_consen 76 FTNMFYGFIIGLVIA 90 (97)
T ss_pred hhhHHHHHHHHHHHH
Confidence 344445555555443
No 211
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=23.14 E-value=2.8e+02 Score=21.38 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIE 72 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~ 72 (143)
.+.++.-+++++-+..|.+|++
T Consensus 70 ~~Fs~~l~el~~~~~~L~~~~~ 91 (207)
T cd07634 70 KEFARLLIAVEEERRRLIQNAN 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666654
No 212
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.99 E-value=69 Score=24.50 Aligned_cols=49 Identities=14% Similarity=0.311 Sum_probs=33.5
Q ss_pred HHhhcChhHHhHHHHHHHHHHHHHHHHHHH------HHHHHHhhHhHHHHHHhhH
Q 032327 41 QYCVDHPEEISKLAKVKAQVSEVKGVMMEN------IEKVLDRGEKIELLVDKTE 89 (143)
Q Consensus 41 ~~~n~~~~~~dki~~~~~~l~ev~~im~~n------i~~~l~Rge~L~~L~~ks~ 89 (143)
+.|....++..++.++..++-.++-++.+| ++.+|.-||+|+-+.-+|+
T Consensus 141 k~ya~yaeq~~k~n~ls~~l~riq~~l~~~Vp~le~lN~~L~~~eRLePf~~~~d 195 (217)
T KOG4515|consen 141 KQYAGYAEQLSKLNQLSDDLCRIQIILEDIVPMLETLNEILTPDERLEPFNLGSD 195 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcccccCCcccCcc
Confidence 444333345567777777777777766665 5788888999988777765
No 213
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=22.94 E-value=76 Score=26.95 Aligned_cols=22 Identities=5% Similarity=-0.268 Sum_probs=16.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 032327 111 LQNMKIKLIVLGILIALILIIV 132 (143)
Q Consensus 111 wk~~k~~iii~~iv~~~~~ii~ 132 (143)
|+++-+|.++++.|+++.++.|
T Consensus 406 ~~~~~LW~~Lv~gV~vL~~mA~ 427 (429)
T PF13163_consen 406 WKRWLLWGALVLGVAVLGGMAW 427 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHhe
Confidence 7888888888887776666554
No 214
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.80 E-value=2.2e+02 Score=18.24 Aligned_cols=14 Identities=14% Similarity=0.340 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 032327 52 KLAKVKAQVSEVKG 65 (143)
Q Consensus 52 ki~~~~~~l~ev~~ 65 (143)
-+..++.+++.+..
T Consensus 34 ti~~l~~~~~~i~~ 47 (90)
T PF06103_consen 34 TIDTLQEQVDPITK 47 (90)
T ss_pred HHHHHHHhHHHHHH
Confidence 34444555544443
No 215
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.64 E-value=4.3e+02 Score=21.56 Aligned_cols=38 Identities=18% Similarity=0.366 Sum_probs=16.4
Q ss_pred hhHHHHHHHhhc----ChhHHhHHHHHHHHHHHHHHHHHHHHH
Q 032327 34 PKLKELMQYCVD----HPEEISKLAKVKAQVSEVKGVMMENIE 72 (143)
Q Consensus 34 ~~l~~~~~~~n~----~~~~~dki~~~~~~l~ev~~im~~ni~ 72 (143)
..+..+..||.- .|.. +++.+++.++++....+.+.-+
T Consensus 201 ~WV~A~~~Y~~v~~~V~P~~-~~l~~a~~~l~~~~~~L~~~~~ 242 (344)
T PF12777_consen 201 KWVRAMVKYYEVNKEVEPKR-QKLEEAEAELEEAEEQLAEKQA 242 (344)
T ss_dssp HHHHHHHHHHHHCCCCCHHH-HHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345555565531 2432 4444444444444444433333
No 216
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=22.56 E-value=1.4e+02 Score=16.65 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=10.9
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 032327 108 KMWLQNMKIKLIVLGILI 125 (143)
Q Consensus 108 ~~~wk~~k~~iii~~iv~ 125 (143)
+.+.-+...|+++.++++
T Consensus 18 ~eCCf~lq~Wv~v~l~v~ 35 (38)
T PF10853_consen 18 KECCFRLQIWVIVLLAVL 35 (38)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 445666777776665543
No 217
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=22.32 E-value=1.9e+02 Score=17.43 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=28.1
Q ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Q 032327 45 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIEL 83 (143)
Q Consensus 45 ~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~ 83 (143)
.|+....++.+...++++....+.+.+-..+.++...+.
T Consensus 22 ~d~~~a~~i~~~e~~id~~~~~~~~~~~~~~~~~~~~~~ 60 (88)
T PF01895_consen 22 RDSELAQEIIQLEEEIDELYREIRRQILKILKNQNPLEE 60 (88)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGHHH
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 455556788888888888888888877666666666555
No 218
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=22.28 E-value=4.5e+02 Score=21.88 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=12.5
Q ss_pred HhHHHHHHhhHHHHHhHHHHHh
Q 032327 79 EKIELLVDKTENLHQQAQDFRS 100 (143)
Q Consensus 79 e~L~~L~~ks~~L~~~a~~F~~ 100 (143)
.++++++++...|.+.......
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~ 165 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQ 165 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhh
Confidence 4566666666666655555444
No 219
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=22.10 E-value=1.1e+02 Score=21.38 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 032327 116 IKLIVLGILIALILIIVLSVC 136 (143)
Q Consensus 116 ~~iii~~iv~~~~~ii~~~~c 136 (143)
+++++++-..++.++|++.+=
T Consensus 67 lii~LivSLaLVsFvIFLiiQ 87 (128)
T PF15145_consen 67 LIIVLIVSLALVSFVIFLIIQ 87 (128)
T ss_pred HHHHHHHHHHHHHHHHHheee
Confidence 344444444555667766543
No 220
>PF05803 Chordopox_L2: Chordopoxvirus L2 protein; InterPro: IPR008447 This family consists of several Chordopoxvirus L2 proteins.
Probab=21.83 E-value=2.1e+02 Score=19.00 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 032327 108 KMWLQNMKIKLIVLGILI 125 (143)
Q Consensus 108 ~~~wk~~k~~iii~~iv~ 125 (143)
++.||||+..++++.+..
T Consensus 60 Rlv~RN~~ill~l~l~~~ 77 (87)
T PF05803_consen 60 RLVKRNYKILLILALSYA 77 (87)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 467788877666555443
No 221
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=21.68 E-value=3.5e+02 Score=20.93 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=33.4
Q ss_pred CccchhchhHHHHH-HHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 27 GLNKEFGPKLKELM-QYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKV 74 (143)
Q Consensus 27 ~l~~~F~~~l~~~~-~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~ 74 (143)
++ ..|...++++- .-.++||-+..-+.+++..++++...|.+-++.+
T Consensus 36 Gl-~~f~s~~~~i~~~a~~DdPyAD~~Ll~~E~~l~~~~~~l~~~~~~l 83 (216)
T TIGR03761 36 GM-PGFISRLNRINQASEQDDPYADWALLRIEEKLLSARQEMQALLQRL 83 (216)
T ss_pred Cc-HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 56777777655 3334789888888999999988888776655443
No 222
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=21.39 E-value=2e+02 Score=17.30 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhH
Q 032327 53 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQA 95 (143)
Q Consensus 53 i~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a 95 (143)
+.+++.+.+.+..-+.. ++=+=|.||++|+..-.+|..+|
T Consensus 12 L~qmq~kFq~mS~~I~~---riDeM~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILG---RIDEMSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHCCHHHH-------
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHhc
Confidence 34444444443333333 33344666777666665655544
No 223
>PRK10132 hypothetical protein; Provisional
Probab=21.32 E-value=2.8e+02 Score=18.98 Aligned_cols=18 Identities=17% Similarity=0.160 Sum_probs=8.0
Q ss_pred hHhHHHHHHhhHHHHHhH
Q 032327 78 GEKIELLVDKTENLHQQA 95 (143)
Q Consensus 78 ge~L~~L~~ks~~L~~~a 95 (143)
|+.++.+-++.+..-..+
T Consensus 40 ~~~~~~lR~r~~~~L~~a 57 (108)
T PRK10132 40 KGEAEAARRKAQALLKET 57 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 224
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=21.29 E-value=2.3e+02 Score=18.06 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=14.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 032327 109 MWLQNMKIKLIVLGILIALILIIV 132 (143)
Q Consensus 109 ~~wk~~k~~iii~~iv~~~~~ii~ 132 (143)
+.++..+.-+++++++.+++...+
T Consensus 12 ll~~~l~~~i~~a~~ls~~~~~~~ 35 (73)
T PF02937_consen 12 LLAKRLKRHIVVAFVLSLGVAAAY 35 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665554444
No 225
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=21.23 E-value=3.9e+02 Score=20.56 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIE 72 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~ 72 (143)
.+...+-+++++-+.+|.++.+
T Consensus 70 ~kF~~~L~ei~~~r~~L~~qa~ 91 (207)
T cd07636 70 QEFAAVLRNLEDERTRMIENAS 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666654
No 226
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=21.18 E-value=32 Score=27.92 Aligned_cols=28 Identities=7% Similarity=0.251 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRG 78 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rg 78 (143)
+.|.++...+-+-.+-..+...+.|.-+
T Consensus 67 eeI~~L~~~L~~~~g~~~~~f~~am~pe 94 (290)
T PF05454_consen 67 EEIEKLRKRLVDDDGKPSQEFVRAMGPE 94 (290)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHhCCC
Confidence 3455555555554445555555555443
No 227
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.02 E-value=8.5e+02 Score=24.40 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHH
Q 032327 55 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRK 108 (143)
Q Consensus 55 ~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~ 108 (143)
.++...+-+.+.+.+-.+....-.+|.+.|.+.++.|-.+|..-.+.-+.|...
T Consensus 1665 ~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~ 1718 (1758)
T KOG0994|consen 1665 ILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELE 1718 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555666666666666666665555555555443
No 228
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=21.00 E-value=2.3e+02 Score=17.87 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=6.6
Q ss_pred HHHHhhhHHHHHHHHH
Q 032327 96 QDFRSTGTKMRRKMWL 111 (143)
Q Consensus 96 ~~F~~~a~~l~~~~~w 111 (143)
..|-+.+++-=+|.-|
T Consensus 21 ~~f~~~~~~E~~KV~W 36 (73)
T COG0690 21 FNFFKEVRKELKKVVW 36 (73)
T ss_pred HHHHHHHHHHHHhccC
Confidence 3444444433333333
No 229
>PRK13739 conjugal transfer protein TraP; Provisional
Probab=20.86 E-value=3.9e+02 Score=20.41 Aligned_cols=44 Identities=7% Similarity=0.193 Sum_probs=28.8
Q ss_pred hHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032327 88 TENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 132 (143)
Q Consensus 88 s~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~ 132 (143)
+.++...|-.+ .-|.-||+-.|.=+|-.+.=++-..++++++.|
T Consensus 6 ~~~~~~~all~-~va~~LRWL~W~vkyaVIwPlATmaLlv~lvlw 49 (198)
T PRK13739 6 SSRQACHALLY-VVARVLRWLFWCVKYAVIWPLATMALMVLFVLW 49 (198)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445444 557889999998777766666666666666665
No 230
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=20.65 E-value=3.1e+02 Score=19.15 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=5.8
Q ss_pred hhHHHHHHHHHHHh
Q 032327 101 TGTKMRRKMWLQNM 114 (143)
Q Consensus 101 ~a~~l~~~~~wk~~ 114 (143)
+-+.+++++.+=+.
T Consensus 51 el~~L~rR~~li~~ 64 (130)
T PF11026_consen 51 ELRILRRRARLIRR 64 (130)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 231
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=20.54 E-value=2.3e+02 Score=17.65 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032327 34 PKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 76 (143)
Q Consensus 34 ~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~ 76 (143)
..|...-..|..||-. .+|.++-.++.++-...+.-|...|.
T Consensus 14 K~i~~v~~FF~~DPlG-qkIa~l~kdw~~~~~~~r~KiR~~L~ 55 (64)
T PF05596_consen 14 KWIEEVRNFFYEDPLG-QKIAQLAKDWNEICQEVRKKIRAALA 55 (64)
T ss_pred HHHHHHHHHhccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777788977 78998888888887777776666553
No 232
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.44 E-value=57 Score=21.86 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.5
Q ss_pred HHHHHHHhc
Q 032327 128 ILIIVLSVC 136 (143)
Q Consensus 128 ~~ii~~~~c 136 (143)
.++.|+++|
T Consensus 84 ~~l~w~f~~ 92 (96)
T PTZ00382 84 GFLCWWFVC 92 (96)
T ss_pred HHHhheeEE
Confidence 344555555
No 233
>PTZ00046 rifin; Provisional
Probab=20.36 E-value=4.8e+02 Score=21.93 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=30.0
Q ss_pred cchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHH----HHHHHHHHhh
Q 032327 29 NKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMM----ENIEKVLDRG 78 (143)
Q Consensus 29 ~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~----~ni~~~l~Rg 78 (143)
+.+=+|.+++.|+.|++. ...+..+-...+.+-+.... ++|++++-.+
T Consensus 50 nYDNDPeMK~Vme~F~rq--TsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKD 101 (358)
T PTZ00046 50 NYDNDPEMKSVMENFDRQ--TSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKD 101 (358)
T ss_pred CCCCcHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 345579999999999643 22566655555555555444 4566766543
No 234
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.33 E-value=2.6e+02 Score=18.13 Aligned_cols=6 Identities=33% Similarity=1.071 Sum_probs=2.3
Q ss_pred HHHHHH
Q 032327 105 MRRKMW 110 (143)
Q Consensus 105 l~~~~~ 110 (143)
++.+.|
T Consensus 69 V~e~P~ 74 (94)
T PF05957_consen 69 VRENPW 74 (94)
T ss_pred HHHChH
Confidence 333333
No 235
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=20.29 E-value=5.6e+02 Score=21.99 Aligned_cols=12 Identities=0% Similarity=0.122 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSE 62 (143)
Q Consensus 51 dki~~~~~~l~e 62 (143)
+.+..+......
T Consensus 118 ~~~~~~~~~~~~ 129 (553)
T PRK15048 118 ATSRNIDEKYKN 129 (553)
T ss_pred HHHHHHHHHHHH
Confidence 334444333333
No 236
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=20.28 E-value=91 Score=27.23 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMME 69 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ 69 (143)
++++ +-.++.++.+-+.+
T Consensus 432 ~PlD-IS~eL~~vn~sL~~ 449 (490)
T PF00523_consen 432 DPLD-ISSELGQVNNSLNN 449 (490)
T ss_dssp SHHH-HHHHHHHHHHHHHH
T ss_pred Cccc-hhhHHHHHHHHHHH
Confidence 4555 66666666554443
No 237
>PHA02141 hypothetical protein
Probab=20.23 E-value=1.3e+02 Score=20.00 Aligned_cols=16 Identities=38% Similarity=0.937 Sum_probs=12.1
Q ss_pred HHHHHhHHHHHHHHHH
Q 032327 109 MWLQNMKIKLIVLGIL 124 (143)
Q Consensus 109 ~~wk~~k~~iii~~iv 124 (143)
.|.|+.-+|+||.++.
T Consensus 10 swl~~n~ly~ii~~l~ 25 (105)
T PHA02141 10 SWLRNNVLYMIIIGLL 25 (105)
T ss_pred HHHHhchHHHHHHHHH
Confidence 5888888888776554
No 238
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.22 E-value=6.9e+02 Score=23.08 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=38.2
Q ss_pred chhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032327 30 KEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRG 78 (143)
Q Consensus 30 ~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rg 78 (143)
.-|.+.+.+-+..|..+ +..|-++++-.+.+.+.+.+..|++..+.+.
T Consensus 226 ~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~ 273 (716)
T KOG0058|consen 226 DLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNL 273 (716)
T ss_pred HHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888443 4558999999999999999999988776644
Done!