Query 032327
Match_columns 143
No_of_seqs 143 out of 948
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:39:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_A Vesicle-associated memb 100.0 2.7E-32 9.3E-37 183.3 13.1 88 50-137 4-91 (91)
2 4b93_A Vesicle-associated memb 100.0 3.1E-34 1.1E-38 215.7 -10.2 113 1-115 77-189 (189)
3 2kog_A Vesicle-associated memb 100.0 1.2E-31 4.1E-36 188.0 0.6 88 50-137 32-119 (119)
4 2nut_C Vesicle-trafficking pro 100.0 2.8E-31 9.5E-36 200.3 0.1 110 1-113 86-196 (196)
5 2nps_A VAMP-4, vesicle-associa 99.9 2.3E-26 7.9E-31 148.9 4.9 72 46-117 3-74 (74)
6 1sfc_A VAMP 2, protein (synapt 99.9 5.2E-25 1.8E-29 149.0 9.2 68 50-117 29-96 (96)
7 1l4a_A Synaptobrevin; snare, s 99.9 8.4E-26 2.9E-30 148.2 3.4 70 47-116 11-80 (80)
8 3kyq_A YKT6, synaptobrevin hom 99.9 7.1E-26 2.4E-30 171.4 -2.9 103 1-107 92-194 (199)
9 1n7s_A Vesicle-associated memb 99.9 3.9E-22 1.4E-26 125.1 8.4 60 51-110 4-63 (63)
10 3b5n_A Synaptobrevin homolog 1 99.9 6.4E-22 2.2E-26 123.4 8.5 60 51-110 2-61 (61)
11 1gl2_A Endobrevin; membrane pr 99.8 1.3E-20 4.5E-25 118.8 6.9 63 45-107 3-65 (65)
12 1urq_A M-tomosyn isoform; tran 99.7 9.7E-18 3.3E-22 104.8 7.3 59 51-109 4-62 (63)
13 3zym_A Phosphatidylinositol-bi 98.3 4.2E-07 1.4E-11 72.5 3.4 53 29-81 244-310 (310)
14 2vx8_A Nucleoporin-like protei 98.0 7E-07 2.4E-11 65.5 0.2 45 1-46 119-163 (169)
15 3fie_C Fragment of vesicle-ass 98.0 1.9E-09 6.4E-14 60.6 -10.7 29 51-79 9-37 (38)
16 3bw6_A Synaptobrevin homolog Y 98.0 3.6E-06 1.2E-10 60.0 3.1 49 1-52 95-144 (144)
17 3hd7_B Syntaxin-1A; membrane p 97.7 0.002 6.9E-08 43.6 13.3 43 51-93 21-63 (109)
18 3hd7_A Vesicle-associated memb 95.5 0.29 9.8E-06 31.8 11.9 48 52-99 13-60 (91)
19 2kog_A Vesicle-associated memb 89.6 0.085 2.9E-06 36.1 0.6 49 52-100 41-89 (119)
20 1jth_B Syntaxin 1A; coiled-coi 84.8 5.1 0.00017 24.7 8.2 43 51-93 10-52 (77)
21 1n7s_A Vesicle-associated memb 83.2 5.3 0.00018 23.7 8.7 56 58-113 4-59 (63)
22 3b5n_A Synaptobrevin homolog 1 81.7 6.1 0.00021 23.3 8.5 53 59-111 3-55 (61)
23 1sfc_A VAMP 2, protein (synapt 81.1 8.9 0.00031 24.8 9.4 55 57-111 29-83 (96)
24 1rh5_B Preprotein translocase 80.8 1.7 5.7E-05 27.2 3.4 52 81-132 5-56 (74)
25 3hd7_B Syntaxin-1A; membrane p 79.8 11 0.00036 24.9 13.2 13 51-63 24-36 (109)
26 1t3j_A Mitofusin 1; coiled coi 79.6 10 0.00036 24.7 8.9 49 51-99 36-84 (96)
27 2ww9_B Protein transport prote 76.4 2.8 9.7E-05 26.6 3.5 45 87-131 24-68 (80)
28 1utg_A Uteroglobin; steroid bi 71.2 5.5 0.00019 24.3 3.8 43 35-77 20-62 (70)
29 1ccd_A Clara cell 17 KD protei 70.2 6.4 0.00022 24.5 4.0 43 35-77 22-64 (77)
30 2k1a_A Integrin alpha-IIB; sin 64.5 14 0.00046 20.4 4.1 20 121-140 19-38 (42)
31 1l4a_C S-SNAP25 fusion protein 63.2 25 0.00087 22.1 6.4 60 35-96 13-72 (83)
32 2knc_A Integrin alpha-IIB; tra 62.5 7.4 0.00025 22.7 2.9 19 121-139 21-39 (54)
33 3b5n_B Protein SSO1; snare com 62.5 22 0.00076 21.2 9.1 44 51-94 10-53 (69)
34 1l4a_A Synaptobrevin; snare, s 61.2 12 0.0004 23.3 4.0 50 51-100 22-71 (80)
35 1txp_A HnRNP C, heterogeneous 61.1 6.7 0.00023 19.7 2.2 24 55-82 3-26 (28)
36 2nps_B Syntaxin 13, vesicle-as 61.0 24 0.00083 21.2 9.3 43 51-93 6-48 (71)
37 2l8s_A Integrin alpha-1; trans 60.9 8.4 0.00029 22.5 3.0 19 121-139 18-36 (54)
38 2wwb_B SEC61gamma, protein tra 58.7 1.5 5.3E-05 26.9 -0.5 46 86-131 9-54 (68)
39 2nps_A VAMP-4, vesicle-associa 58.6 28 0.00096 21.1 6.4 49 52-100 16-64 (74)
40 3mp7_B Preprotein translocase 57.1 6.7 0.00023 23.5 2.1 49 84-132 4-52 (61)
41 1gl2_A Endobrevin; membrane pr 56.9 28 0.00096 20.6 7.1 52 58-109 9-60 (65)
42 1utr_A Uteroglobin; clara cell 55.4 9.8 0.00033 24.6 2.9 43 35-77 41-83 (96)
43 2zxe_G FXYD10, phospholemman-l 55.2 20 0.00067 22.2 4.1 31 111-142 16-46 (74)
44 2ygg_A Sodium/hydrogen exchang 54.2 15 0.00052 22.5 3.5 21 58-78 7-27 (70)
45 1gl2_B Syntaxin 7; membrane pr 53.6 32 0.0011 20.3 8.4 44 51-94 9-52 (65)
46 3fym_A Putative uncharacterize 52.9 2.9 9.8E-05 28.2 0.0 24 110-133 101-124 (130)
47 1zkr_A Major allergen I polype 51.6 28 0.00094 24.6 4.9 43 35-77 21-64 (153)
48 1n7s_B Syntaxin 1A; neuronal s 51.4 36 0.0012 20.2 8.6 43 51-93 12-54 (68)
49 1urq_A M-tomosyn isoform; tran 50.8 37 0.0013 20.1 8.0 50 51-100 11-60 (63)
50 1nhl_A Synaptosomal-associated 50.5 33 0.0011 19.5 6.9 40 56-95 5-44 (54)
51 3lcn_C MRNA transport factor G 50.2 23 0.0008 17.7 3.2 22 50-71 5-26 (29)
52 1f5n_A Interferon-induced guan 48.5 43 0.0015 28.5 6.6 18 30-47 434-451 (592)
53 2pjw_V Vacuolar protein sortin 46.8 54 0.0019 21.0 5.9 41 50-90 32-72 (91)
54 1spf_A Pulmonary surfactant-as 44.2 34 0.0012 17.8 3.3 17 115-131 11-27 (35)
55 3b5n_C Protein transport prote 41.1 58 0.002 19.7 9.2 56 51-106 12-67 (70)
56 3h3g_B Parathyroid hormone-rel 39.8 18 0.0006 17.5 1.7 13 102-114 4-16 (24)
57 1sfc_B Protein (syntaxin 1A), 39.4 66 0.0023 19.8 8.8 43 51-93 21-63 (83)
58 1pi7_A VPU protein, U ORF prot 39.0 34 0.0012 18.2 2.9 16 118-133 7-22 (36)
59 3j1r_A Archaeal adhesion filam 38.3 37 0.0013 16.6 2.8 10 123-132 15-24 (26)
60 3ghg_A Fibrinogen alpha chain; 37.5 82 0.0028 26.7 6.4 28 34-63 49-76 (562)
61 1n7s_C SNAP-25A; neuronal snar 37.1 72 0.0025 19.6 8.8 47 49-95 21-67 (79)
62 3t97_C Nuclear pore glycoprote 36.4 58 0.002 19.4 4.0 19 74-92 7-25 (64)
63 2yko_A LINE-1 ORF1P; RNA-bindi 35.7 95 0.0033 23.3 6.0 38 51-88 13-50 (233)
64 2jp3_A FXYD domain-containing 35.2 50 0.0017 20.0 3.6 11 111-121 14-24 (67)
65 2klu_A T-cell surface glycopro 34.6 8.6 0.00029 23.5 0.1 19 118-136 12-30 (70)
66 3nmd_A CGMP dependent protein 32.7 87 0.003 19.2 6.1 42 60-101 21-62 (72)
67 1dn1_B Syntaxin 1A, syntaxin b 31.0 32 0.0011 26.0 2.8 42 51-92 200-241 (267)
68 3vmt_A Monofunctional glycosyl 30.7 26 0.0009 26.9 2.2 26 104-129 26-51 (263)
69 1iij_A ERBB-2 receptor protein 25.9 67 0.0023 16.9 2.7 16 116-131 7-22 (35)
70 1qu7_A Methyl-accepting chemot 25.4 2E+02 0.0067 20.9 7.8 15 84-98 208-222 (227)
71 3vkg_A Dynein heavy chain, cyt 24.8 3.6E+02 0.012 28.0 9.5 29 50-78 1926-1954(3245)
72 4gkw_A Spindle assembly abnorm 24.5 1.8E+02 0.006 20.1 8.4 21 51-71 11-31 (167)
73 2kmf_A Photosystem II 11 kDa p 23.6 84 0.0029 21.0 3.5 59 7-67 50-111 (115)
74 4e81_A Chaperone protein DNAK; 23.4 1.8E+02 0.0062 21.1 5.7 17 82-98 194-210 (219)
75 1y4m_A HERV-FRD_6P24.1 proviru 23.3 1.1E+02 0.0037 17.6 3.5 20 51-70 7-26 (53)
76 3vkg_A Dynein heavy chain, cyt 22.7 4.1E+02 0.014 27.6 9.4 7 133-139 2114-2120(3245)
77 2y6x_A PSB27, photosystem II 1 22.5 1.2E+02 0.0041 20.2 4.1 60 6-67 45-107 (113)
78 3dl8_C SECE; RECA-type ATPase 22.2 73 0.0025 18.7 2.7 20 112-131 25-44 (65)
79 3k4t_A Virion-associated prote 20.5 1.7E+02 0.0058 18.7 4.3 27 52-78 3-32 (95)
80 1pd7_B MAD1; PAH2, SIN3, eukar 20.5 75 0.0026 15.5 2.0 20 70-89 4-23 (26)
81 1mof_A Moloney murine leukemia 20.5 1.3E+02 0.0045 17.4 3.5 20 51-70 9-28 (55)
No 1
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=100.00 E-value=2.7e-32 Score=183.26 Aligned_cols=88 Identities=32% Similarity=0.594 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 032327 50 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALIL 129 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ 129 (143)
.|++++++++|+||+++|.+||+++++|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++++++++++++++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 032327 130 IIVLSVCH 137 (143)
Q Consensus 130 ii~~~~c~ 137 (143)
+|++.+|.
T Consensus 84 ii~~~~~~ 91 (91)
T 3hd7_A 84 IIIVYFST 91 (91)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhC
Confidence 99999983
No 2
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=99.97 E-value=3.1e-34 Score=215.72 Aligned_cols=113 Identities=38% Similarity=0.648 Sum_probs=75.8
Q ss_pred CchHHHHHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 032327 1 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEK 80 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~ 80 (143)
|+||++|+++|...| +..+.++.|++++.+|++.|+++|++|+ ||.+.|++.+++.+|+||++||.+||+++|+|||+
T Consensus 77 f~fL~~i~~eF~~~~-~~~~~~~~~~~~~~~f~~~l~~~~~~y~-d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~ 154 (189)
T 4b93_A 77 FSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHS-ENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGER 154 (189)
T ss_dssp HHHHHHHHHHHHHHH-GGGGGTCCTTTTHHHHHHHHHHHHHHHH-CC-------CCHHHHHTTTTCCEECCCCBCTTSSB
T ss_pred HHHHHHHHHHHHhhc-cccccccCCccccchhhHHHHHHHHhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 789999999999999 4556778889998999999999999994 66677999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhH
Q 032327 81 IELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMK 115 (143)
Q Consensus 81 L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k 115 (143)
||.|++||++|+.+|..|+++|++|+|+|||+|+|
T Consensus 155 l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 155 LELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp CCCCEETTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999987
No 3
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.96 E-value=1.2e-31 Score=188.01 Aligned_cols=88 Identities=32% Similarity=0.574 Sum_probs=85.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 032327 50 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALIL 129 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ 129 (143)
.|++.+++.+|+||+++|.+||+++|+|||+||+|++||++|+.+|..|+++|++++++|||+|+|++++++++++++++
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii~ 111 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 111 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 032327 130 IIVLSVCH 137 (143)
Q Consensus 130 ii~~~~c~ 137 (143)
+|++.+|.
T Consensus 112 iIi~~~c~ 119 (119)
T 2kog_A 112 IIIVYFST 119 (119)
T ss_dssp HHHHHHHC
T ss_pred HhhhheeC
Confidence 99999993
No 4
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.96 E-value=2.8e-31 Score=200.34 Aligned_cols=110 Identities=24% Similarity=0.407 Sum_probs=48.5
Q ss_pred CchHHHHHHHHHhhcCCCCCcc-CCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032327 1 MAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGE 79 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~~-~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge 79 (143)
|+||++|+++|...|+. .+.. +.||++ .+|++.|+++|++| +||.+.|++.+++.+|+||++||.+||+++|+|||
T Consensus 86 f~fL~~i~~~F~~~~~~-~~~~~~~~~~~-~~f~~~l~~~~~~y-~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~Rge 162 (196)
T 2nut_C 86 FAYLEDLHSEFDEQHGK-KVPTVSRPYSF-IEFDTFIQKTKKLY-IDSRARRNLGSINTELQDVQRIMVANIEEVLQRGE 162 (196)
T ss_dssp HHHHHHHHHHHHHHHTT-TTTTCCSTTTT-GGGHHHHHHHHTTT-SCCC-----------------CCEEEHHHHC----
T ss_pred HHHHHHHHHHHHHhccc-hhccccCCCch-HHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 78999999999999964 4543 578998 59999999999999 67877799999999999999999999999999999
Q ss_pred hHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHH
Q 032327 80 KIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 113 (143)
Q Consensus 80 ~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~ 113 (143)
+||.|++||++|+.+|..|+++|++++|+|||++
T Consensus 163 ~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 163 ALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp ----------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999984
No 5
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.92 E-value=2.3e-26 Score=148.87 Aligned_cols=72 Identities=42% Similarity=0.666 Sum_probs=62.1
Q ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHH
Q 032327 46 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIK 117 (143)
Q Consensus 46 ~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~ 117 (143)
+|.+.|++.+++.+|+||++||.+||+++|+|||+|+.|++||++|+..|..|+++|++++++|||+|+|++
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455569999999999999999999999999999999999999999999999999999999999999999974
No 6
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.92 E-value=5.2e-25 Score=148.96 Aligned_cols=68 Identities=35% Similarity=0.639 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHH
Q 032327 50 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIK 117 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~ 117 (143)
.|++.+++.+|+||++||.+||+++|+|||+|+.|++||++|+..|..|+++|++++++|||+|+|++
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 49999999999999999999999999999999999999999999999999999999999999999975
No 7
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.91 E-value=8.4e-26 Score=148.23 Aligned_cols=70 Identities=36% Similarity=0.620 Sum_probs=61.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHH
Q 032327 47 PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKI 116 (143)
Q Consensus 47 ~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~ 116 (143)
|.+.|++.+++.+|+||++||.+||+++|+|||+|+.|++||++|+..|..|+++|++++++|||+|+|+
T Consensus 11 ~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 11 VQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455999999999999999999999999999999999999999999999999999999999999999985
No 8
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.90 E-value=7.1e-26 Score=171.39 Aligned_cols=103 Identities=28% Similarity=0.433 Sum_probs=91.4
Q ss_pred CchHHHHHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 032327 1 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEK 80 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~ 80 (143)
|+||++|+++|.+.|++..|..+.+.+ ..| +.|+++|++| +||++.|++.+++.+|+||++||.+||+++|+|||+
T Consensus 92 F~fL~ei~~eF~~~~~~~~~~~~~~~~--~~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM~~NI~~vl~Rgek 167 (199)
T 3kyq_A 92 FTLLEKVLDEFSKQVDRIDWPVGSPAT--IHY-TALDGHLSRY-QNPREADPMSKVQAELDETKIILHNTMESLLERGEK 167 (199)
T ss_dssp HHHHHHHHHHHHHHSCGGGSTTCCTTT--CCC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEEESSGGGTSCTTCC
T ss_pred HHHHHHHHHHHHHhccchhhhcccccc--ccc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 789999999999999766664433332 346 7899999999 678888999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHhHHHHHhhhHHHHH
Q 032327 81 IELLVDKTENLHQQAQDFRSTGTKMRR 107 (143)
Q Consensus 81 L~~L~~ks~~L~~~a~~F~~~a~~l~~ 107 (143)
||.|++||++|+.+|..|+++|+++++
T Consensus 168 Ld~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 168 LDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999985
No 9
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.87 E-value=3.9e-22 Score=125.15 Aligned_cols=60 Identities=37% Similarity=0.675 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 110 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~ 110 (143)
|++.+++.+|+||++||.+||+++|+|||+|+.|++||++|+..|..|+++|++++++||
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 10
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.87 E-value=6.4e-22 Score=123.43 Aligned_cols=60 Identities=37% Similarity=0.730 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMW 110 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~ 110 (143)
|++.+++.+|+||++||.+||+++|+|||+|+.|++||++|+..|..|+++|++|+|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 799999999999999999999999999999999999999999999999999999999998
No 11
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.82 E-value=1.3e-20 Score=118.85 Aligned_cols=63 Identities=30% Similarity=0.587 Sum_probs=52.8
Q ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHH
Q 032327 45 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRR 107 (143)
Q Consensus 45 ~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~ 107 (143)
++|.+.|++.+++.+|+||+.||.+||+++|+|||+|+.|++||++|+..|..|+++|++|+|
T Consensus 3 ~~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 3 HMSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356666999999999999999999999999999999999999999999999999999999985
No 12
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.73 E-value=9.7e-18 Score=104.83 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 109 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~ 109 (143)
.+++.++.++++|+++|.+||+++++|||+|+.|++||++|.++|..|.+.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999875
No 13
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.26 E-value=4.2e-07 Score=72.52 Aligned_cols=53 Identities=23% Similarity=0.518 Sum_probs=33.4
Q ss_pred cchhchhHHHHHHHhhc----------C----hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q 032327 29 NKEFGPKLKELMQYCVD----------H----PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 81 (143)
Q Consensus 29 ~~~F~~~l~~~~~~~n~----------~----~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L 81 (143)
...|.....++.++|.. - +...|.+.+++++++||++||.+||+++++|||+|
T Consensus 244 ykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 244 YKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 45566666666666631 0 11238999999999999999999999999999986
No 14
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=98.03 E-value=7e-07 Score=65.50 Aligned_cols=45 Identities=31% Similarity=0.544 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhcC
Q 032327 1 MAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDH 46 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~~ 46 (143)
|+||++|+++|...|+ ..|.++.||+|+.+|++.|++.|++|+++
T Consensus 119 F~fLedI~~eF~~~y~-~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 119 FSFLNEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHHHHHT-TGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHhh-hhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 6899999999999995 56777789999779999999999999654
No 15
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.01 E-value=1.9e-09 Score=60.57 Aligned_cols=29 Identities=41% Similarity=0.601 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGE 79 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge 79 (143)
|++.+++.+|+||++||.+||+++|+||+
T Consensus 9 d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 9 RRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 89999999999999999999999999996
No 16
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=97.98 E-value=3.6e-06 Score=60.00 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHhhcCCCCCccC-CCCCccchhchhHHHHHHHhhcChhHHhH
Q 032327 1 MAFLERVKDEFVSKYGGGKAATA-PANGLNKEFGPKLKELMQYCVDHPEEISK 52 (143)
Q Consensus 1 F~fL~ei~~~F~~~~~~~~~~~~-~~~~l~~~F~~~l~~~~~~~n~~~~~~dk 52 (143)
|+||++|+++|.++|++..|.++ .+++ +..| +.|++.|++| +||++.|+
T Consensus 95 F~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 95 YTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp HHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred HHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 78999999999999965546653 3222 3456 8999999999 78887664
No 17
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.72 E-value=0.002 Score=43.61 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 93 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~ 93 (143)
+.+.+++..+.|+.+++.+=-..+-+.|+.++.++...++-..
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~ 63 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6789999999999999998888899999999999887666554
No 18
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=95.45 E-value=0.29 Score=31.79 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHH
Q 032327 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFR 99 (143)
Q Consensus 52 ki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~ 99 (143)
.+++++.-+.+--+-+.++=+++-+=.++-++|...|.....+|...+
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~ 60 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 60 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444455555555555555553
No 19
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=89.58 E-value=0.085 Score=36.14 Aligned_cols=49 Identities=10% Similarity=0.178 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHh
Q 032327 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 100 (143)
Q Consensus 52 ki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~ 100 (143)
.++.++..+.+.-+-+.+.=+++-+=.++-++|.+.|.....+|...++
T Consensus 41 evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~r 89 (119)
T 2kog_A 41 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333333334444455555555554433
No 20
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=84.82 E-value=5.1 Score=24.70 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 93 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~ 93 (143)
+.+.+++..+.|+.+++.+=-..+.+.|+-++.++...+.-..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6789999999999999999888999999999988776655553
No 21
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=83.23 E-value=5.3 Score=23.67 Aligned_cols=56 Identities=9% Similarity=0.098 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHH
Q 032327 58 AQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWLQN 113 (143)
Q Consensus 58 ~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~ 113 (143)
..+..++.-+.+..+-+.++-+++-.=.++-+.|.+.|......|...++..---+
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~ 59 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777777777888888888877776654333
No 22
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=81.73 E-value=6.1 Score=23.30 Aligned_cols=53 Identities=9% Similarity=0.181 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHH
Q 032327 59 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWL 111 (143)
Q Consensus 59 ~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~w 111 (143)
.+..++.-+.+..+-+.++-+++-.=.++-+.|.+.|......|...++..--
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~ 55 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANR 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777777777888887777777766543
No 23
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=81.08 E-value=8.9 Score=24.83 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHHHH
Q 032327 57 KAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKMWL 111 (143)
Q Consensus 57 ~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~w 111 (143)
...+..++.-+.+..+-+.++-+++-+=.++-+.|.+.|......|...++..--
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~k 83 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAK 83 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777777777777777666543
No 24
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=80.84 E-value=1.7 Score=27.20 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=31.2
Q ss_pred HHHHHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032327 81 IELLVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 132 (143)
Q Consensus 81 L~~L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~ 132 (143)
++.+.+...+.-.++..|-+.|++=-|+-..+-.|...+.++++-++.|+|-
T Consensus 5 ~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 5 FNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp -------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666778888888888888888888877665555555455443
No 25
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=79.78 E-value=11 Score=24.90 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEV 63 (143)
Q Consensus 51 dki~~~~~~l~ev 63 (143)
.++.+--.++.++
T Consensus 24 ~~Ie~~I~eL~~i 36 (109)
T 3hd7_B 24 IKLENSIRELHDM 36 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444443444433
No 26
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=79.64 E-value=10 Score=24.73 Aligned_cols=49 Identities=16% Similarity=0.288 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFR 99 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~ 99 (143)
.-..++..+|++++.-|.+-|+.+-..=..||.+..++..|.+.|..+.
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~ 84 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLE 84 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3457788999999999999999998888888887777776666555443
No 27
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=76.43 E-value=2.8 Score=26.57 Aligned_cols=45 Identities=13% Similarity=0.015 Sum_probs=28.2
Q ss_pred hhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032327 87 KTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 131 (143)
Q Consensus 87 ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii 131 (143)
...+.-.++..|-+.+++=.|+-.++..|...+..+++-++.|+|
T Consensus 24 ~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiI 68 (80)
T 2ww9_B 24 APVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAI 68 (80)
T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556667777777777778777777666555555555553
No 28
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=71.21 E-value=5.5 Score=24.30 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=34.5
Q ss_pred hHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032327 35 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 77 (143)
Q Consensus 35 ~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~R 77 (143)
.-...++.|+.+|...+...++++=++....--+.||.+++++
T Consensus 20 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556678888888888888999988888888888888887764
No 29
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=70.24 E-value=6.4 Score=24.50 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=34.6
Q ss_pred hHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032327 35 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 77 (143)
Q Consensus 35 ~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~R 77 (143)
.-...++.|+.+|...+...++++=++....--+.||.+++++
T Consensus 22 ~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 22 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556678888888888888999988888888888888888764
No 30
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=64.51 E-value=14 Score=20.43 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhccCCc
Q 032327 121 LGILIALILIIVLSVCHGFN 140 (143)
Q Consensus 121 ~~iv~~~~~ii~~~~c~gf~ 140 (143)
++++++.+++..+.=||-|+
T Consensus 19 ~GLllL~li~~~LwK~GFFk 38 (42)
T 2k1a_A 19 GGLLLLTILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHcCccc
Confidence 34444444445566786553
No 31
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=63.22 E-value=25 Score=22.12 Aligned_cols=60 Identities=8% Similarity=0.245 Sum_probs=45.7
Q ss_pred hHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHH
Q 032327 35 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQ 96 (143)
Q Consensus 35 ~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~ 96 (143)
.++..+.+. .+ ...+.......-+++.+.+...++..+..-||.|+..+...+.+...-.
T Consensus 13 ~l~~~~~~~-~~-esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~ 72 (83)
T 1l4a_C 13 EIQQQCNQV-TD-DSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMK 72 (83)
T ss_dssp HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 22 3347778888889999999999999999999999999988877775543
No 32
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=62.53 E-value=7.4 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 032327 121 LGILIALILIIVLSVCHGF 139 (143)
Q Consensus 121 ~~iv~~~~~ii~~~~c~gf 139 (143)
++++++.+++..+.-||-|
T Consensus 21 ~GLllL~li~~~LwK~GFF 39 (54)
T 2knc_A 21 GGLLLLTILVLAMWKVGFF 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 3444444445556678655
No 33
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=62.45 E-value=22 Score=21.22 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 94 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~ 94 (143)
+.+.+++..+.|+.+++.+=-..+.+.|+-|+.++...+.-...
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLD 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67899999999999999998899999999999998866655543
No 34
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=61.23 E-value=12 Score=23.29 Aligned_cols=50 Identities=10% Similarity=0.176 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 100 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~ 100 (143)
+.+..++..+.+..+-+.+.=+++-+=.++-+.|...|......|...++
T Consensus 22 ~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~r 71 (80)
T 1l4a_A 22 AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555666666666666666544
No 35
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=61.14 E-value=6.7 Score=19.71 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHH
Q 032327 55 KVKAQVSEVKGVMMENIEKVLDRGEKIE 82 (143)
Q Consensus 55 ~~~~~l~ev~~im~~ni~~~l~Rge~L~ 82 (143)
.++.|+.++ ..++|.+|+|-|+++
T Consensus 3 ~IkkELtQI----K~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQI----KQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHH----HHHHHHHHHHHHhhh
Confidence 455555554 457788888766653
No 36
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=61.04 E-value=24 Score=21.15 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 93 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~ 93 (143)
+.+.+++..+.|+.+++.+=-..+-+.|+-|+.++...+.-..
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 48 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEV 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6789999999999999999888899999999999887666554
No 37
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.87 E-value=8.4 Score=22.51 Aligned_cols=19 Identities=32% Similarity=0.502 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 032327 121 LGILIALILIIVLSVCHGF 139 (143)
Q Consensus 121 ~~iv~~~~~ii~~~~c~gf 139 (143)
++++++.+++..+.-||-|
T Consensus 18 ~GLLLL~Lii~~LwK~GFF 36 (54)
T 2l8s_A 18 AGLLLLMLLILALWKIGFF 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 3444444444556678655
No 38
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=58.71 E-value=1.5 Score=26.92 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=28.0
Q ss_pred HhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032327 86 DKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILII 131 (143)
Q Consensus 86 ~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii 131 (143)
+...+.-.++..|-+.++|=.|+-.++..|...+..+++-++.|+|
T Consensus 9 e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~I 54 (68)
T 2wwb_B 9 EPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFV 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566677777777777777777776665555544444543
No 39
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=58.64 E-value=28 Score=21.12 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHh
Q 032327 52 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 100 (143)
Q Consensus 52 ki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~ 100 (143)
.+..++.-+.+.-+-+.+.-+++-.=.++-+.|...|......|....+
T Consensus 16 el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r 64 (74)
T 2nps_A 16 QVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRR 64 (74)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444445555566666666666665544
No 40
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=57.11 E-value=6.7 Score=23.45 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=28.6
Q ss_pred HHHhhHHHHHhHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032327 84 LVDKTENLHQQAQDFRSTGTKMRRKMWLQNMKIKLIVLGILIALILIIV 132 (143)
Q Consensus 84 L~~ks~~L~~~a~~F~~~a~~l~~~~~wk~~k~~iii~~iv~~~~~ii~ 132 (143)
+.+...+.-.++..|-+.|+|=.|+-..+..|...+.++++-++-++|-
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666777777777777777777766665555544444443
No 41
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=56.89 E-value=28 Score=20.58 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHHHHH
Q 032327 58 AQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMRRKM 109 (143)
Q Consensus 58 ~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~~~~ 109 (143)
..+..++.-+.+..+-+.++-+++-.=.++-+.|.+.|......|...++..
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A 60 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTS 60 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666767666666666666777777777777777666553
No 42
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=55.41 E-value=9.8 Score=24.59 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=33.7
Q ss_pred hHHHHHHHhhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032327 35 KLKELMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 77 (143)
Q Consensus 35 ~l~~~~~~~n~~~~~~dki~~~~~~l~ev~~im~~ni~~~l~R 77 (143)
..+..++.||.+|...+...++++=+++....-+.|+.++++.
T Consensus 41 ~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 41 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4556667898888888888888888888887888888877763
No 43
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=55.19 E-value=20 Score=22.24 Aligned_cols=31 Identities=6% Similarity=0.351 Sum_probs=10.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhccCCccC
Q 032327 111 LQNMKIKLIVLGILIALILIIVLSVCHGFNCG 142 (143)
Q Consensus 111 wk~~k~~iii~~iv~~~~~ii~~~~c~gf~C~ 142 (143)
|...++..++.+.|++ +..|++..+|-.+|.
T Consensus 16 Y~tLRigGLifA~vLf-i~GI~iilS~kcrCk 46 (74)
T 2zxe_G 16 YYRLRVVGLIVAAVLC-VIGIIILLAGKCRCK 46 (74)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHTTTC----
T ss_pred hHHheeccchhHHHHH-HHHHHHHHcCccccC
Confidence 4455554444433333 222333334433554
No 44
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=54.21 E-value=15 Score=22.53 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 032327 58 AQVSEVKGVMMENIEKVLDRG 78 (143)
Q Consensus 58 ~~l~ev~~im~~ni~~~l~Rg 78 (143)
.+++++++|+..|+.++-+|.
T Consensus 7 ~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 7 DKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 569999999999999998875
No 45
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=53.61 E-value=32 Score=20.26 Aligned_cols=44 Identities=11% Similarity=0.284 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQ 94 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~ 94 (143)
+.+.+++..+.++.+++.+=-..+-+.|+-|+.++...+.-...
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 52 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVH 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998888999999999998866555443
No 46
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=52.89 E-value=2.9 Score=28.23 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 032327 110 WLQNMKIKLIVLGILIALILIIVL 133 (143)
Q Consensus 110 ~wk~~k~~iii~~iv~~~~~ii~~ 133 (143)
.++.+.+.++++++++++++++|+
T Consensus 101 ~~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 101 KSKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666665555555554
No 47
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=51.56 E-value=28 Score=24.60 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=32.4
Q ss_pred hHHHHHHHhhcChhHHhHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 032327 35 KLKELMQYCVDHPEEISKLAKVKAQVS-EVKGVMMENIEKVLDR 77 (143)
Q Consensus 35 ~l~~~~~~~n~~~~~~dki~~~~~~l~-ev~~im~~ni~~~l~R 77 (143)
.....++.|+.+|...+...++++=++ ....--+.|+.+++++
T Consensus 21 eYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLek 64 (153)
T 1zkr_A 21 EYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDK 64 (153)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 355667888888888888888888888 6666667777777664
No 48
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=51.45 E-value=36 Score=20.17 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 93 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~ 93 (143)
+.+.+++..+.++.+++.+=-..+.+.|+-|+.++...+.-..
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 54 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 54 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6789999999999999999888999999999999886655543
No 49
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=50.76 E-value=37 Score=20.14 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRS 100 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~ 100 (143)
..+..+.+.+.+-.+-+.+.-+++-.=.++-+.|.+.+++...+|..+++
T Consensus 11 ~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 11 GAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666655566666666666666666665543
No 50
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=50.51 E-value=33 Score=19.52 Aligned_cols=40 Identities=8% Similarity=0.198 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhH
Q 032327 56 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQA 95 (143)
Q Consensus 56 ~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a 95 (143)
...-+.++.++-.+.+..+-+.||.|+.....-++.....
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l 44 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDM 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHH
Confidence 4556788899999999999999999998887666665443
No 51
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=50.16 E-value=23 Score=17.69 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=18.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 032327 50 ISKLAKVKAQVSEVKGVMMENI 71 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~ni 71 (143)
.+++.-++..++|-+.|..++-
T Consensus 5 ~sKm~lLKKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 5 ASKMKLLKKKIEEQREILQKTH 26 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4889999999999999988763
No 52
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=48.51 E-value=43 Score=28.53 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=13.0
Q ss_pred chhchhHHHHHHHhhcCh
Q 032327 30 KEFGPKLKELMQYCVDHP 47 (143)
Q Consensus 30 ~~F~~~l~~~~~~~n~~~ 47 (143)
..|...+.++.+.|+..|
T Consensus 434 ~~~~~~~~~~~~~Y~~~~ 451 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEP 451 (592)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 457777888888886555
No 53
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=46.83 E-value=54 Score=20.96 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHH
Q 032327 50 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 90 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~ 90 (143)
..+++.+-.++..++--|..++++-.++.+.|-++.+|-..
T Consensus 32 d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~ 72 (91)
T 2pjw_V 32 DSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISE 72 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888999999999999999999999888877777776544
No 54
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=44.15 E-value=34 Score=17.79 Aligned_cols=17 Identities=24% Similarity=0.555 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032327 115 KIKLIVLGILIALILII 131 (143)
Q Consensus 115 k~~iii~~iv~~~~~ii 131 (143)
|-.+++..++++++.+|
T Consensus 11 KrLlivVvVvVlvVvVi 27 (35)
T 1spf_A 11 KRLLVVVVVVVLVVVVI 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred heEEEEEeeehhhHHHH
Confidence 33344444444434333
No 55
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=41.14 E-value=58 Score=19.68 Aligned_cols=56 Identities=5% Similarity=0.074 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhhhHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTKMR 106 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~a~~l~ 106 (143)
+.......-.++..++=..++..+-+-||+|+..+..-+.+....+.=.+..+.|+
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666778888888999999999999999999988888887777666666665
No 56
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=39.83 E-value=18 Score=17.55 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHh
Q 032327 102 GTKMRRKMWLQNM 114 (143)
Q Consensus 102 a~~l~~~~~wk~~ 114 (143)
-..++|+||..+.
T Consensus 4 ~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 4 IQDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3578999998874
No 57
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=39.38 E-value=66 Score=19.78 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQ 93 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~ 93 (143)
+.+.+++..+.|+.+++.+=-..+-+.|+-|+.++...+.-..
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 63 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6789999999999999999888899999999998886655543
No 58
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=38.96 E-value=34 Score=18.15 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 032327 118 LIVLGILIALILIIVL 133 (143)
Q Consensus 118 iii~~iv~~~~~ii~~ 133 (143)
.++++++++++.++++
T Consensus 7 ~ivalivalIiaIVVW 22 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVW 22 (36)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 59
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=38.28 E-value=37 Score=16.61 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 032327 123 ILIALILIIV 132 (143)
Q Consensus 123 iv~~~~~ii~ 132 (143)
++..+++.+|
T Consensus 15 v~aaVllylW 24 (26)
T 3j1r_A 15 VAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333344444
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.51 E-value=82 Score=26.67 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=18.0
Q ss_pred hhHHHHHHHhhcChhHHhHHHHHHHHHHHH
Q 032327 34 PKLKELMQYCVDHPEEISKLAKVKAQVSEV 63 (143)
Q Consensus 34 ~~l~~~~~~~n~~~~~~dki~~~~~~l~ev 63 (143)
-.|+.+|.+.++|- ...|.+|+++++++
T Consensus 49 CrLQglLdkqErDl--tkrINELKnqLEdl 76 (562)
T 3ghg_A 49 CRMKGLIDEVNQDF--TNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHTHH
T ss_pred cchhhhHHhhcCcH--HHHHHHHHHHHHHH
Confidence 34777776654442 25777777777776
No 61
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=37.12 E-value=72 Score=19.60 Aligned_cols=47 Identities=13% Similarity=0.269 Sum_probs=39.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhH
Q 032327 49 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQA 95 (143)
Q Consensus 49 ~~dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a 95 (143)
..+.+.....-+.++.++-.+.+..+-..||.|+.......+.....
T Consensus 21 s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l 67 (79)
T 1n7s_C 21 SLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDM 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHH
Confidence 44788888999999999999999999999999998888766665543
No 62
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=36.41 E-value=58 Score=19.44 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=8.4
Q ss_pred HHHhhHhHHHHHHhhHHHH
Q 032327 74 VLDRGEKIELLVDKTENLH 92 (143)
Q Consensus 74 ~l~Rge~L~~L~~ks~~L~ 92 (143)
++++|++|..|...+....
T Consensus 7 LveNgekI~~L~~~v~~~e 25 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVK 25 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 63
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=35.71 E-value=95 Score=23.33 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKT 88 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks 88 (143)
+.++.+...++++.......-..+-...++|.+|.+.+
T Consensus 13 ErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 13 ERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57777777777777766666666666667777776654
No 64
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=35.17 E-value=50 Score=20.01 Aligned_cols=11 Identities=0% Similarity=0.347 Sum_probs=4.5
Q ss_pred HHHhHHHHHHH
Q 032327 111 LQNMKIKLIVL 121 (143)
Q Consensus 111 wk~~k~~iii~ 121 (143)
|...++..++.
T Consensus 14 Y~tLRigGLif 24 (67)
T 2jp3_A 14 WESLQLGGLIF 24 (67)
T ss_dssp GHHHHHHHHHH
T ss_pred hHHheecchhh
Confidence 34444444333
No 65
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=34.61 E-value=8.6 Score=23.49 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 032327 118 LIVLGILIALILIIVLSVC 136 (143)
Q Consensus 118 iii~~iv~~~~~ii~~~~c 136 (143)
+++++++.++++.-+..+|
T Consensus 12 ivlGg~~~lll~~glcI~c 30 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFF 30 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 5666666666665555555
No 66
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.71 E-value=87 Score=19.19 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHHHhHHHHHhh
Q 032327 60 VSEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRST 101 (143)
Q Consensus 60 l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~~~a~~F~~~ 101 (143)
+.+++..+.+-.+++-++.+.|+.|+..-++....-..++..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666777777777777777777666666555555443
No 67
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=31.02 E-value=32 Score=26.02 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLH 92 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni~~~l~Rge~L~~L~~ks~~L~ 92 (143)
+-+.+++..+.|+.+++.+=-..+.+.|+-|+.++...+.-.
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~ 241 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAV 241 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 568889999999999988888888899999999988776654
No 68
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=30.66 E-value=26 Score=26.88 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 032327 104 KMRRKMWLQNMKIKLIVLGILIALIL 129 (143)
Q Consensus 104 ~l~~~~~wk~~k~~iii~~iv~~~~~ 129 (143)
+-.+|.|+++.-.+++++++++++++
T Consensus 26 ~~~kk~~~~~~~~~~~~~~l~~~~~~ 51 (263)
T 3vmt_A 26 KPPKKKKSKRILLKILLTILIIIALF 51 (263)
T ss_dssp ---------CCTTHHHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44566677766555555554444443
No 69
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.94 E-value=67 Score=16.88 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 032327 116 IKLIVLGILIALILII 131 (143)
Q Consensus 116 ~~iii~~iv~~~~~ii 131 (143)
...|+++++.+++++|
T Consensus 7 ~~sIaagVvglll~vi 22 (35)
T 1iij_A 7 VTFIIATVVGVLLFLI 22 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHHH
Confidence 3444555554333333
No 70
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=25.39 E-value=2e+02 Score=20.95 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=5.4
Q ss_pred HHHhhHHHHHhHHHH
Q 032327 84 LVDKTENLHQQAQDF 98 (143)
Q Consensus 84 L~~ks~~L~~~a~~F 98 (143)
|.+.++.|......|
T Consensus 208 L~~~a~~L~~~v~~F 222 (227)
T 1qu7_A 208 LEEQASRLTEAVAVF 222 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333333333333
No 71
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.78 E-value=3.6e+02 Score=28.00 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=17.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032327 50 ISKLAKVKAQVSEVKGVMMENIEKVLDRG 78 (143)
Q Consensus 50 ~dki~~~~~~l~ev~~im~~ni~~~l~Rg 78 (143)
.+|+.....+|++.+..+.+--.++-+..
T Consensus 1926 L~KL~et~~~V~~l~~~L~~~~~~L~~k~ 1954 (3245)
T 3vkg_A 1926 LKKLRDTEAQVKDLQVSLAQKNRELDVKN 1954 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777766655544444333
No 72
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.54 E-value=1.8e+02 Score=20.09 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMENI 71 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~ni 71 (143)
+.++.++..+++++.-+.+|-
T Consensus 11 ~~ia~L~~D~~s~~~eleEnq 31 (167)
T 4gkw_A 11 DEVADLKQDTESLQKQLEENQ 31 (167)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555665555555553
No 73
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=23.56 E-value=84 Score=20.97 Aligned_cols=59 Identities=10% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhc---ChhHHhHHHHHHHHHHHHHHHH
Q 032327 7 VKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVD---HPEEISKLAKVKAQVSEVKGVM 67 (143)
Q Consensus 7 i~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~---~~~~~dki~~~~~~l~ev~~im 67 (143)
.-++|...|.+. ..++...|+ ..+...|..+-.+|+. -|-..+...++.+|++++...+
T Consensus 50 ~ind~vsrYRr~-~~v~g~~Sf-~tm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~al 111 (115)
T 2kmf_A 50 QINDYISRYRRK-GDAGGLKSF-TTMQTALNSLAGYYTSYGARPIPEKLKKRLQLEFTQAERSI 111 (115)
T ss_dssp HHHHHHHHTHHH-HCSSSCHHH-HHHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345677777432 122223343 5567788888888863 2333367788888888765543
No 74
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=23.38 E-value=1.8e+02 Score=21.07 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=7.1
Q ss_pred HHHHHhhHHHHHhHHHH
Q 032327 82 ELLVDKTENLHQQAQDF 98 (143)
Q Consensus 82 ~~L~~ks~~L~~~a~~F 98 (143)
+.+..+.+.|...+..+
T Consensus 194 ~~i~~~~~~L~~~~~~i 210 (219)
T 4e81_A 194 AAIEAKMQELAQVSQKL 210 (219)
T ss_dssp HHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 75
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=23.35 E-value=1.1e+02 Score=17.61 Aligned_cols=20 Identities=20% Similarity=0.488 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMEN 70 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~n 70 (143)
+.+..++.+++.+.++..+|
T Consensus 7 ~sl~~l~~ql~sla~vvlQN 26 (53)
T 1y4m_A 7 KALTTMQEQIDSLAAVVLQN 26 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999888
No 76
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.73 E-value=4.1e+02 Score=27.64 Aligned_cols=7 Identities=29% Similarity=0.159 Sum_probs=3.5
Q ss_pred HHhccCC
Q 032327 133 LSVCHGF 139 (143)
Q Consensus 133 ~~~c~gf 139 (143)
++-||.|
T Consensus 2114 isY~G~f 2120 (3245)
T 3vkg_A 2114 LAYIGFF 2120 (3245)
T ss_dssp HHTGGGS
T ss_pred HHHcCCC
Confidence 3445655
No 77
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=22.47 E-value=1.2e+02 Score=20.17 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCCccCCCCCccchhchhHHHHHHHhhcC---hhHHhHHHHHHHHHHHHHHHH
Q 032327 6 RVKDEFVSKYGGGKAATAPANGLNKEFGPKLKELMQYCVDH---PEEISKLAKVKAQVSEVKGVM 67 (143)
Q Consensus 6 ei~~~F~~~~~~~~~~~~~~~~l~~~F~~~l~~~~~~~n~~---~~~~dki~~~~~~l~ev~~im 67 (143)
+.-++|...|.+. ..++...|+ ..+...|..+-.+|+.. |-..+...++.+|++++...+
T Consensus 45 ~~ind~vsrYRr~-~~v~g~~Sf-ttm~tAlNaLAGHY~s~g~~PlPek~k~Rl~~el~~AE~al 107 (113)
T 2y6x_A 45 KKLNDFFALYRRD-DSLRSLSSF-MTMQTALNSLAGHYSSYPNRPLPEKLKARLEQEFKQVELAL 107 (113)
T ss_dssp HHHHHHHHHHTTC-HHHHTSHHH-HHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCccccchH-HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3446788888544 222223343 56677888888888643 323367777888887765433
No 78
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=22.24 E-value=73 Score=18.74 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=7.7
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 032327 112 QNMKIKLIVLGILIALILII 131 (143)
Q Consensus 112 k~~k~~iii~~iv~~~~~ii 131 (143)
+..+..++++++++++.+++
T Consensus 25 e~~~~T~vViv~v~i~~~~i 44 (65)
T 3dl8_C 25 LVVKATISVIIFSLAIGVYL 44 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33345554444444444333
No 79
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=20.55 E-value=1.7e+02 Score=18.73 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhh
Q 032327 52 KLAKVKAQVSEVKG---VMMENIEKVLDRG 78 (143)
Q Consensus 52 ki~~~~~~l~ev~~---im~~ni~~~l~Rg 78 (143)
++.+++.+++++.. .|..-|+.+|++-
T Consensus 3 nl~~i~~Ei~~~~~~~~~~~~~i~aiL~~~ 32 (95)
T 3k4t_A 3 NLNQIQKEVSEILSDQKSMKADIKAILELL 32 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777655 4556677777654
No 80
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=20.48 E-value=75 Score=15.52 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=13.3
Q ss_pred HHHHHHHhhHhHHHHHHhhH
Q 032327 70 NIEKVLDRGEKIELLVDKTE 89 (143)
Q Consensus 70 ni~~~l~Rge~L~~L~~ks~ 89 (143)
||+.+|+--+-||..+.+++
T Consensus 4 nvq~LLeAAeyLErrEre~E 23 (26)
T 1pd7_B 4 NIQMLLEAADYLERREREAE 23 (26)
T ss_dssp STHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 66677777777776665543
No 81
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=20.48 E-value=1.3e+02 Score=17.37 Aligned_cols=20 Identities=10% Similarity=0.428 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032327 51 SKLAKVKAQVSEVKGVMMEN 70 (143)
Q Consensus 51 dki~~~~~~l~ev~~im~~n 70 (143)
+.+..++.++..+.++.-+|
T Consensus 9 ~si~~l~~ql~sla~vvlQN 28 (55)
T 1mof_A 9 KSISNLEKSLTSLSEVVLQN 28 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999988888
Done!