BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032328
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZV51|ATL56_ARATH RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2
SV=1
Length = 181
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 48 ISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL 107
+SS +K++P F++ + DCVVC + FR G CR LP C H FH +C+D+WLL
Sbjct: 84 LSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLL 143
Query: 108 KTPICPICRTRV 119
K CPICR RV
Sbjct: 144 KASTCPICRARV 155
>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana
GN=ATL49 PE=3 SV=1
Length = 423
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%)
Query: 56 IPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPIC 115
+P F YK+ SP DC VCL F DK RLLP C H+FH +CID+WLL CP+C
Sbjct: 108 LPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLC 167
Query: 116 RTRV 119
R+ +
Sbjct: 168 RSNL 171
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 38/69 (55%)
Query: 56 IPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPIC 115
+P F Y P DC VCL F DK RLLP C H+FH CID+WLL CP+C
Sbjct: 189 LPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLC 248
Query: 116 RTRVSPSKV 124
R +S S V
Sbjct: 249 RRSLSTSNV 257
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 35 YEQSGFAQGGFKMISSDDLKQIPCFEYKAAADRGSSP-VDCVVCLENFRMGDKCRLLPNC 93
+ +S + F + ++ +P F + A +GS +DC VCL F + RLLP C
Sbjct: 85 FNRSTASSDRFSGLDKTAIESLPLFRFSAL--KGSKQGLDCSVCLSKFESVEILRLLPKC 142
Query: 94 RHSFHAQCIDSWLLKTPICPICRTRVSPSKVGVILKDGSS 133
RH+FH CID WL + CP+CR RVS + +L +G+S
Sbjct: 143 RHAFHIGCIDQWLEQHATCPLCRDRVSMEEDSSVLTNGNS 182
>sp|Q940Q4|ATL13_ARATH RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2
SV=2
Length = 472
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 37/61 (60%)
Query: 56 IPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPIC 115
+P F YK+ + P DC VCL F DK RLLP C H+FH CID+WLL CP+C
Sbjct: 116 LPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLC 175
Query: 116 R 116
R
Sbjct: 176 R 176
>sp|Q9FHG8|ATL50_ARATH Putative RING-H2 finger protein ATL50 OS=Arabidopsis thaliana
GN=ATL50 PE=3 SV=1
Length = 210
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 5 ILISLTLLFVGIAALVVIHVCV---------VGRAFRRGYEQSGFAQGGFKM-------- 47
+L+ +TLL + +IH+ V + A+ E S QG ++
Sbjct: 36 VLLYITLLSIIFFVAALIHLLVKFLHRPQTRLDDAYDGITESSTALQGRYQTRFNLHDAE 95
Query: 48 ISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL 107
I + +P YK DC VCL F D+ RLLP C H+FH +CID+WLL
Sbjct: 96 IDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLL 155
Query: 108 KTPICPICR 116
CP+CR
Sbjct: 156 TNSTCPLCR 164
>sp|Q9M0C3|ATL14_ARATH RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2
SV=1
Length = 176
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Query: 53 LKQIPCFEY-KAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPI 111
+K++P F+Y + +++ G DCVVC++ FR G CR LP C H FH +C+D WL+K
Sbjct: 95 VKRLPQFKYCEPSSEYGGD--DCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVST 152
Query: 112 CPICRTRV 119
CPICR RV
Sbjct: 153 CPICRDRV 160
>sp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23
PE=1 SV=2
Length = 163
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 1 MVMEILISLTLLFVGIAALVVIHVCVVGRAFRRGYEQSGFAQG----GFKMISSDDLKQI 56
M+ + ++L L VG+ + +I++ ++ + RR E+ FA+ K +S +L++I
Sbjct: 28 MIATVFMALLLPCVGMCIVFLIYLFLLWCSTRRRIERLRFAEPVKPVTGKGLSVLELEKI 87
Query: 57 PCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICR 116
P + A S +C VCLE+ G RL+P C H FH C D+WL +CP+CR
Sbjct: 88 PKLTGRELAVIARS-TECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCR 146
Query: 117 TRVSPS 122
++P+
Sbjct: 147 AELAPN 152
>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2
SV=1
Length = 369
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 56 IPCFEYKAAADRGS-SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPI 114
+P F YK +G+ P DC VCL F DK RLLPNC H+FH CID+WLL CP+
Sbjct: 127 LPVFLYKEI--KGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPL 184
Query: 115 CR 116
CR
Sbjct: 185 CR 186
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 40 FAQGGFKMISSDDLKQIP--CFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSF 97
F GG K ++ D +++IP D + C VCL++F++G+ R LP+C H F
Sbjct: 160 FDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMF 219
Query: 98 HAQCIDSWLLKTPICPICR 116
H CID+WLL+ CP+CR
Sbjct: 220 HLPCIDNWLLRHGSCPMCR 238
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 39 GFAQGGFKMISSDD--LKQIPCFEYKAAADRGSSPV---------DCVVCLENFRMGDKC 87
F + DD +K +P F Y AAA G V DC VCL F GD
Sbjct: 110 SFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYV 169
Query: 88 RLLPNCRHSFHAQCIDSWLLKTPICPICRTRV 119
R LP C H+FH +CID WL P CP+CRT +
Sbjct: 170 RTLPLCFHAFHLECIDEWLRSHPNCPLCRTAI 201
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 13/122 (10%)
Query: 7 ISLTLLFVGIAALVVIHVCVVGRAFRRGYEQSGFAQGGFKMIS----SDDLKQIPCFEYK 62
+SL L + I L+++ +C++ + + F Q + D LK++P ++K
Sbjct: 176 LSLPLEYYLIPFLIIVGICLILIVI---FMITKFVQDRHRNRRNRLRKDQLKKLPVHKFK 232
Query: 63 AAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT-PICPICRTRVSP 121
+G C +CLE + GDK R+LP C H++H +C+D WL KT CP+C+ +V P
Sbjct: 233 ----KGDEYDVCAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKVVP 287
Query: 122 SK 123
S+
Sbjct: 288 SQ 289
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 13/122 (10%)
Query: 7 ISLTLLFVGIAALVVIHVCVVGRAFRRGYEQSGFAQGGFKMIS----SDDLKQIPCFEYK 62
+SL L + I L+++ +C++ + + F Q + D LK++P ++K
Sbjct: 176 LSLPLEYYLIPFLIIVGICLILIVI---FMITKFVQDRHRNRRNRLRKDQLKKLPVHKFK 232
Query: 63 AAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT-PICPICRTRVSP 121
+G C +CLE + GDK R+LP C H++H +C+D WL KT CP+C+ +V P
Sbjct: 233 ----KGDEYDVCAICLEEYEDGDKLRILP-CSHAYHCKCVDPWLTKTKKTCPVCKQKVVP 287
Query: 122 SK 123
S+
Sbjct: 288 SQ 289
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 4 EILISLTLLFVGIAALVVIHVCVVGRA------FRRGYEQSGFAQGGFKMISSDDLKQIP 57
E++ + + + V ++AL+ +CV G A + R + G + K + L+ +P
Sbjct: 20 EMIAAESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAGGDSPSPNKGLKKKALQSLP 79
Query: 58 CFEYKAA-------ADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP 110
+ AA A+ G S +C +CL +F G++ R+LP C HSFH +CID WL+
Sbjct: 80 RSTFTAAESTSGAAAEEGDS-TECAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRS 138
Query: 111 ICPICRTRVSP 121
CP CR ++P
Sbjct: 139 SCPSCRRILTP 149
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 40 FAQGGFKMISSDDLKQIPCFEY--KAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSF 97
F GG K ++ D + +IP + K D + C VCL++F++G+ R LP+C H F
Sbjct: 155 FDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMF 214
Query: 98 HAQCIDSWLLKTPICPICR 116
H CID+WL + CP+CR
Sbjct: 215 HLPCIDNWLFRHGSCPMCR 233
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 38/69 (55%)
Query: 53 LKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPIC 112
+ +P F A +S +C VCL + DK R LPNC+H FH C+D+WL C
Sbjct: 87 IASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTC 146
Query: 113 PICRTRVSP 121
P+CRT V P
Sbjct: 147 PVCRTEVEP 155
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 48 ISSDDLKQIPCFEYKAAADRGSSP----VDCVVCLENFRMGDKCRLLPNCRHSFHAQCID 103
+ ++ +K P F Y A RG P ++CVVCL F+ + RL+P C H FHA C+D
Sbjct: 57 LDAEAIKSFPSFVYTEA--RGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVD 114
Query: 104 SWLLKTPICPICRTRVSP 121
WL + CPICR +V P
Sbjct: 115 IWLSHSSTCPICRAKVVP 132
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 51 DDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT- 109
D LK++P ++K +G C +CL+ + GDK R+LP C H++H +C+D WL KT
Sbjct: 221 DQLKKLPVHKFK----KGDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTK 275
Query: 110 PICPICRTRVSPSK 123
CP+C+ +V PS+
Sbjct: 276 KTCPVCKQKVVPSQ 289
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 51 DDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT- 109
D LK++P ++K +G C +CL+ + GDK R+LP C H++H +C+D WL KT
Sbjct: 221 DQLKKLPVHKFK----KGDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTK 275
Query: 110 PICPICRTRVSPSK 123
CP+C+ +V PS+
Sbjct: 276 KTCPVCKQKVVPSQ 289
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 51 DDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT- 109
D LK++P ++K +G C +CL+ + GDK R+LP C H++H +C+D WL KT
Sbjct: 221 DQLKKLPVHKFK----KGDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTK 275
Query: 110 PICPICRTRVSPSK 123
CP+C+ +V PS+
Sbjct: 276 KTCPVCKQKVVPSQ 289
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 51 DDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT- 109
D LK++P ++K +G C +CL+ + GDK R+LP C H++H +C+D WL KT
Sbjct: 221 DQLKKLPVHKFK----KGDEYDVCAICLDEYEDGDKLRILP-CSHAYHCKCVDPWLTKTK 275
Query: 110 PICPICRTRVSPSK 123
CP+C+ +V PS+
Sbjct: 276 KTCPVCKQKVVPSQ 289
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 53 LKQIPCFEYKAAADRGSSPVD-----CVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL 107
LKQIP Y GS +D C++CL +F G+K R+LP C H FH +CID+WLL
Sbjct: 94 LKQIPVGLY------GSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLL 147
Query: 108 KTPICPICRTRV---SPSKVGVILKDGSSVSSDV 138
CP CR + PS + V +D V S V
Sbjct: 148 SRSSCPTCRQSLLLEQPSPMAVSRRDEDMVVSIV 181
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 53 LKQIPCFEYKAAADRGSS--PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP 110
L +P F++ + R SS DC VCL F D+ RLLP C H+FHA CID WL+
Sbjct: 94 LDSLPIFKFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQ 153
Query: 111 ICPICRT 117
CP+CR+
Sbjct: 154 TCPLCRS 160
>sp|Q9LUL6|ATL61_ARATH Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana
GN=ATL61 PE=3 SV=1
Length = 204
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 53 LKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPIC 112
L+ IP ++ + ++CVVCL GDK R+LP+C H FH +CIDSWL C
Sbjct: 69 LRSIPIVDFNTKDFK--YVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTC 126
Query: 113 PICRTRV 119
PICR RV
Sbjct: 127 PICRKRV 133
>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2
SV=2
Length = 407
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 53 LKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPIC 112
++ +P F + A + ++C VCL F + RLLP C+H+FH +C+D+WL C
Sbjct: 126 IESLPVFRFGALSGHKDG-LECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTC 184
Query: 113 PICRTRVSPSKVGVI 127
P+CR RV P + +I
Sbjct: 185 PLCRYRVDPEDILLI 199
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 53 LKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPIC 112
+K +P F + + P++C VCL F + R+LPNC+H+FH CID W C
Sbjct: 100 IKSLPVFTFSDETHKD--PIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTC 157
Query: 113 PICRTRV 119
P+CR+ V
Sbjct: 158 PLCRSLV 164
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 53 LKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPIC 112
+K +P F + A + ++C VCL F+ + R++PNC+H+FH CID W C
Sbjct: 57 IKSLPIFTFSAVTALFA--MECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSC 114
Query: 113 PICRTRVSPSKVGV 126
P+CR+++ P GV
Sbjct: 115 PLCRSQIEPFAGGV 128
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 48 ISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL 107
+S D L+++PC+ + R C +CL++ + G+ R LP C H+FH C+D WL+
Sbjct: 151 LSGDSLRKLPCYIMSSEMVR-RQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLI 209
Query: 108 KTPICPICRTRV 119
+ CPICR V
Sbjct: 210 RHGSCPICRQAV 221
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 53 LKQIPCFEYK------AAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWL 106
++ IP F++K D+ + +C VCL F+ +K R++PNC H FH CID WL
Sbjct: 107 IRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWL 166
Query: 107 LKTPICPICRTRVS 120
CP+CRT VS
Sbjct: 167 QGNANCPLCRTSVS 180
>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2
SV=1
Length = 375
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 53 LKQIPCFEYKAAADRGSS-------------PVDCVVCLENFRMGDKCRLLPNCRHSFHA 99
++ IP F++K D+ +C VCL F+ +K R++PNC H FH
Sbjct: 104 IRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHI 163
Query: 100 QCIDSWLLKTPICPICRTRVS 120
CID WL CP+CRTRVS
Sbjct: 164 DCIDVWLQNNANCPLCRTRVS 184
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
Query: 26 VVGR--AFRRGYEQSGFAQGGFKMISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRM 83
VV R +FRRG + S ++ +P + Y AA + + DCV+CL +F
Sbjct: 105 VVSRPYSFRRG-------------LDSQAVRSLPVYRYTKAAKQRNE--DCVICLSDFEE 149
Query: 84 GDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRT 117
G+ +++P+C H FH C+D+WL CP+CR+
Sbjct: 150 GETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 34 GYEQSGFAQGGFKMISSDDLKQIPCFEYKAAADR--GSSPVDCVVCLENFRMGDKCRLLP 91
G+ + F + + + D + P F Y G V+C +CL F + RL+P
Sbjct: 86 GHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMP 145
Query: 92 NCRHSFHAQCIDSWLLKTPICPICRTRVSP 121
C H+FHA CID WL CP+CR + P
Sbjct: 146 PCSHAFHASCIDVWLSSRSTCPVCRASLPP 175
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 72 VDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122
+C VCL D R+LPNC+H FH C+D+WL CP+CRT PS
Sbjct: 98 TECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPS 148
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 4 EILISLTLLFVGIAALVVIHV---CVVGRAFRRGYEQ-----SGFAQGGFKMISSDDLKQ 55
+++ L++L GI + +H C + R+ R + S K I L+
Sbjct: 57 NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRM 116
Query: 56 IPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPIC 115
P Y + +CV+CL +F G++ RLLP C H FH +CID WL + CP C
Sbjct: 117 FPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKC 176
Query: 116 RT 117
R
Sbjct: 177 RN 178
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 46 KMISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSW 105
K ++ D L +IP D V C VCL++F++G+ R LP+C H FH CID W
Sbjct: 151 KGLTGDSLNRIPKVRI---TDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKW 207
Query: 106 LLKTPICPICRTRV 119
L + CP+CR +
Sbjct: 208 LRRHASCPLCRRHL 221
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 72 VDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGV 126
DC VCL F G+ RLLP C H+FH QCID+WL CP+CR ++ VG+
Sbjct: 155 TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGL 209
>sp|Q9FL07|ATL46_ARATH RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2
SV=1
Length = 376
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 56 IPCFEYKA---------AADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWL 106
+P F YK P DC VCL F DK RLLP C H+FH CID+WL
Sbjct: 116 LPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWL 175
Query: 107 LKTPICPICR-TRVSP 121
CP+CR T SP
Sbjct: 176 QSNSTCPLCRGTLFSP 191
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 26 VVGRAFRRGY----EQSGFAQGGFKMISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENF 81
VV R RR + Q + G ++S +L +P ++ D ++C +CL
Sbjct: 80 VVTRRQRRRFIFVPGQDALSNTG---LTSFELSSLPIVFFRQ--DSCKDGLECSICLSEL 134
Query: 82 RMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRV 119
GDK RLLP C HSFH +CID W CPICR V
Sbjct: 135 VKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 74 CVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP-ICPICRTR 118
C+VCL NF + D+CR L C H FH +CID WL + CP+CRT+
Sbjct: 525 CLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCPLCRTK 570
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 4 EILISLTLLFVGIAALVVIHVCVVGRAFRR------GYEQSGFAQ---GGFKMISSDDLK 54
+L+ L++L GI + +H ++ AFRR +G + K I+ L+
Sbjct: 58 NVLMLLSVLICGIICCLGLHY-IIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALR 116
Query: 55 QIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPI 114
P Y + +CV+CL +F G++ R+LP C H FH +CID WL + CP
Sbjct: 117 MFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPK 176
Query: 115 CR 116
CR
Sbjct: 177 CR 178
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 48 ISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL 107
++ + LKQIP +Y+ +G C +CL+ + GDK R+LP C H++H++C+D WL
Sbjct: 208 LTKEQLKQIPTHDYQ----KGDEYDVCAICLDEYEDGDKLRILP-CAHAYHSRCVDPWLT 262
Query: 108 KT-PICPICRTRV 119
+T CPIC+ V
Sbjct: 263 QTRKTCPICKQPV 275
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 53 LKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPIC 112
++ P F Y +A + +C +CL F D RL+ CRH FH+ CID W C
Sbjct: 83 IRSFPVFHYSSATKKNHG-TECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTC 141
Query: 113 PICRTRVSPSKVG 125
P+CR + P +G
Sbjct: 142 PVCRCELDPGMIG 154
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 48 ISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL 107
++ + LKQIP +Y+ +G C +CL+ + GDK R+LP C H++H++C+D WL
Sbjct: 208 LTKEQLKQIPTHDYQ----KGDQYDVCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLT 262
Query: 108 KT-PICPICRTRV 119
+T CPIC+ V
Sbjct: 263 QTRKTCPICKQPV 275
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 52 DLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPI 111
+LK+ P EY + + + +C +CL F G++ R+LP C HSFH CID+WL+
Sbjct: 84 ELKKFPVAEYGSGEVK-IAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSS 142
Query: 112 CPICR 116
CP CR
Sbjct: 143 CPNCR 147
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 48 ISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL 107
++ + LKQIP +Y+ +G C +CL+ + GDK R+LP C H++H++C+D WL
Sbjct: 208 LTKEQLKQIPTHDYQ----KGDEYDVCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLT 262
Query: 108 KT-PICPICRTRV 119
+T CPIC+ V
Sbjct: 263 QTRKTCPICKQPV 275
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 2 VMEILISLTLLFVGIAALVVIHVCVVG-----RAFRRGYEQSGFAQGGFKMISSDDLKQI 56
V +L++L L G+ ++ + H R FR +GG + + ++
Sbjct: 49 VFAVLVTLFFL-TGLLSVYIRHCARSNPDSSTRYFRNRANDGSSRRGG---LDNAVVESF 104
Query: 57 PCFEYKAAADR--GSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPI 114
P F Y + + GS ++C +CL + RLLP C H FH CID+WL CP+
Sbjct: 105 PVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPV 164
Query: 115 CRTRVS 120
CR+ ++
Sbjct: 165 CRSNLT 170
>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2
SV=1
Length = 362
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 53 LKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPIC 112
+K I ++YK+ D DC VCL F + RLLP C H+FH CID+WL C
Sbjct: 122 IKSITVYKYKSG-DGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNC 180
Query: 113 PICRTRVS 120
P+CR V+
Sbjct: 181 PLCRAFVT 188
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 5 ILISLTLLFVGIAAL-VVIHVCVVGRAF-RRGYEQSGFAQ---------GGFKMISSDDL 53
+L++L FV + V+I+ C RA RR + + Q + + + +
Sbjct: 50 VLVALITAFVLLTVFSVLINRCAQARAPPRRAFRSTASHQPVGGAAAASRASRGLDKEVV 109
Query: 54 KQIPCFEY---KAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP 110
+ P Y KA S P++C VCL F D+ R+LP C H FH CID WL
Sbjct: 110 EAFPTAVYGDVKARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWLAAAV 169
Query: 111 ICPICRTRVSPSKVGVILKDGSSVSS 136
CP+CR ++ V + + S +++
Sbjct: 170 TCPLCRANLTAPPVSLAAAESSDLTA 195
>sp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2
SV=1
Length = 220
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%)
Query: 46 KMISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSW 105
K I LK +P Y + +CV+CL +F G++ R+LP C H FH +CID W
Sbjct: 102 KGIKKKALKMLPVVNYSPEINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKW 161
Query: 106 LLKTPICPICR 116
L + CP CR
Sbjct: 162 LTQHMTCPKCR 172
>sp|Q9FLC6|ATL73_ARATH RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2
SV=1
Length = 176
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Query: 10 TLLFVGIAALVVIHVCVVG------------RAFRRGYEQSGFAQGGFKMISSDDLKQIP 57
T + + +AAL+ +C +G R F + K I LK IP
Sbjct: 39 THMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIP 98
Query: 58 CFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRT 117
Y ++ +C++CL +F G+ R+LP C H FH +CID+WLL CP CR
Sbjct: 99 VDSYSPELKMKAT--ECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQ 156
Query: 118 RVSPSKVGVILKDGSSVSSDVA 139
+ + +GS DVA
Sbjct: 157 SLLEHQTPA---NGSRRGDDVA 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,694,057
Number of Sequences: 539616
Number of extensions: 1921158
Number of successful extensions: 5630
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 5098
Number of HSP's gapped (non-prelim): 562
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)