Query 032328
Match_columns 143
No_of_seqs 130 out of 1768
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.9 5.5E-22 1.9E-26 121.4 8.5 83 38-121 7-89 (91)
2 1x4j_A Ring finger protein 38; 99.8 1.9E-20 6.5E-25 110.5 3.7 69 52-122 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.8 2.9E-19 9.9E-24 99.2 4.3 51 70-120 4-54 (55)
4 2ect_A Ring finger protein 126 99.8 7.5E-19 2.6E-23 104.3 6.0 58 69-127 13-70 (78)
5 2ep4_A Ring finger protein 24; 99.8 9.1E-19 3.1E-23 102.9 5.8 54 69-123 13-66 (74)
6 2kiz_A E3 ubiquitin-protein li 99.8 8.8E-19 3E-23 101.7 5.6 54 68-122 11-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.8 4.6E-19 1.6E-23 106.1 3.7 55 70-124 14-79 (81)
8 3ng2_A RNF4, snurf, ring finge 99.7 1E-17 3.6E-22 97.5 3.9 57 69-126 8-68 (71)
9 3dpl_R Ring-box protein 1; ubi 99.7 1.5E-17 5E-22 104.1 4.5 54 69-123 35-103 (106)
10 2ecm_A Ring finger and CHY zin 99.7 2.1E-17 7.1E-22 91.6 4.1 50 70-120 4-54 (55)
11 2d8s_A Cellular modulator of i 99.7 2.7E-17 9.2E-22 97.9 4.9 56 66-123 10-72 (80)
12 2xeu_A Ring finger protein 4; 99.7 1.4E-17 4.9E-22 94.9 3.2 56 70-126 2-61 (64)
13 1v87_A Deltex protein 2; ring- 99.7 8.3E-17 2.8E-21 102.0 7.1 54 70-124 24-97 (114)
14 2ecn_A Ring finger protein 141 99.7 1.8E-17 6.3E-22 96.3 2.9 57 69-130 13-69 (70)
15 2ea6_A Ring finger protein 4; 99.7 6E-17 2E-21 93.7 4.5 52 69-121 13-68 (69)
16 2djb_A Polycomb group ring fin 99.7 1.6E-16 5.5E-21 92.8 5.6 56 69-128 13-69 (72)
17 2d8t_A Dactylidin, ring finger 99.6 3.1E-17 1.1E-21 95.6 2.2 53 69-125 13-65 (71)
18 4a0k_B E3 ubiquitin-protein li 99.6 3.4E-17 1.2E-21 103.8 0.6 56 69-125 46-116 (117)
19 1chc_A Equine herpes virus-1 r 99.6 4.9E-16 1.7E-20 89.7 4.6 50 70-122 4-53 (68)
20 2ct2_A Tripartite motif protei 99.6 1.5E-15 5.1E-20 91.8 6.9 57 69-126 13-73 (88)
21 2ysl_A Tripartite motif-contai 99.6 1.5E-15 5E-20 88.8 5.6 52 69-124 18-72 (73)
22 2ecy_A TNF receptor-associated 99.6 1.7E-15 5.9E-20 86.9 5.1 51 69-123 13-64 (66)
23 2yur_A Retinoblastoma-binding 99.6 1.7E-15 6E-20 88.8 4.7 52 69-123 13-66 (74)
24 2csy_A Zinc finger protein 183 99.6 1.9E-15 6.4E-20 90.2 4.7 48 69-120 13-60 (81)
25 4ap4_A E3 ubiquitin ligase RNF 99.6 2.5E-15 8.6E-20 97.2 4.7 61 69-130 5-69 (133)
26 1g25_A CDK-activating kinase a 99.6 6.1E-15 2.1E-19 84.3 5.4 58 70-128 2-62 (65)
27 2ct0_A Non-SMC element 1 homol 99.5 6.8E-15 2.3E-19 85.8 5.1 50 70-122 14-65 (74)
28 4ayc_A E3 ubiquitin-protein li 99.5 3.3E-15 1.1E-19 97.7 3.9 49 71-123 53-101 (138)
29 2ecw_A Tripartite motif-contai 99.5 1.6E-14 5.6E-19 86.5 6.4 53 69-125 17-75 (85)
30 1t1h_A Gspef-atpub14, armadill 99.5 1.2E-14 4.2E-19 86.0 5.0 51 69-123 6-57 (78)
31 2egp_A Tripartite motif-contai 99.5 5.2E-15 1.8E-19 87.7 3.1 51 69-123 10-67 (79)
32 2ecv_A Tripartite motif-contai 99.5 2.3E-14 7.8E-19 85.9 5.7 53 69-125 17-75 (85)
33 3lrq_A E3 ubiquitin-protein li 99.5 7.8E-15 2.7E-19 90.9 3.4 51 70-124 21-73 (100)
34 2y43_A E3 ubiquitin-protein li 99.5 2.1E-14 7.2E-19 88.7 4.1 50 70-123 21-71 (99)
35 2ysj_A Tripartite motif-contai 99.5 5E-14 1.7E-18 80.0 5.3 43 69-115 18-63 (63)
36 4ap4_A E3 ubiquitin ligase RNF 99.5 1.7E-14 5.7E-19 93.3 3.1 57 69-126 70-130 (133)
37 2ecj_A Tripartite motif-contai 99.5 5.9E-14 2E-18 78.2 4.4 43 69-115 13-58 (58)
38 2ckl_A Polycomb group ring fin 99.5 5E-14 1.7E-18 88.4 4.2 50 70-122 14-63 (108)
39 3ztg_A E3 ubiquitin-protein li 99.4 1.5E-13 5.2E-18 83.6 5.0 49 69-120 11-61 (92)
40 3fl2_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 88.8 4.2 48 70-121 51-99 (124)
41 1jm7_A BRCA1, breast cancer ty 99.4 1.3E-13 4.5E-18 86.8 4.4 51 71-125 21-74 (112)
42 1e4u_A Transcriptional repress 99.4 5.2E-13 1.8E-17 78.9 6.4 56 69-125 9-66 (78)
43 2ckl_B Ubiquitin ligase protei 99.4 2.2E-13 7.7E-18 91.4 3.9 49 71-122 54-103 (165)
44 1bor_A Transcription factor PM 99.4 2.1E-13 7.2E-18 75.6 2.6 50 69-125 4-53 (56)
45 3hct_A TNF receptor-associated 99.4 2.4E-13 8.2E-18 86.5 3.0 51 69-123 16-67 (118)
46 1rmd_A RAG1; V(D)J recombinati 99.4 3.1E-13 1E-17 85.7 3.4 51 71-125 23-74 (116)
47 1z6u_A NP95-like ring finger p 99.4 4.9E-13 1.7E-17 88.5 4.4 49 70-122 77-126 (150)
48 2vje_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 76.4 3.1 48 70-121 7-57 (64)
49 2y1n_A E3 ubiquitin-protein li 99.3 4.7E-13 1.6E-17 100.2 4.1 52 69-124 330-382 (389)
50 2vje_B MDM4 protein; proto-onc 99.3 3.4E-13 1.2E-17 76.5 2.3 50 70-121 6-56 (63)
51 3l11_A E3 ubiquitin-protein li 99.3 2.9E-13 1E-17 85.7 1.7 48 70-121 14-62 (115)
52 2kr4_A Ubiquitin conjugation f 99.3 1.6E-12 5.4E-17 78.1 4.4 52 69-124 12-63 (85)
53 2kre_A Ubiquitin conjugation f 99.3 1.6E-12 5.6E-17 80.3 4.4 53 69-125 27-79 (100)
54 3knv_A TNF receptor-associated 99.3 6.4E-13 2.2E-17 87.1 2.6 51 69-123 29-80 (141)
55 1wgm_A Ubiquitin conjugation f 99.3 3.9E-12 1.3E-16 78.3 5.6 53 69-125 20-73 (98)
56 1jm7_B BARD1, BRCA1-associated 99.3 1.5E-12 5.2E-17 82.7 2.3 48 70-123 21-69 (117)
57 4ic3_A E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 74.7 1.7 45 70-122 23-68 (74)
58 3k1l_B Fancl; UBC, ring, RWD, 99.2 3.3E-12 1.1E-16 93.6 1.7 54 69-122 306-374 (381)
59 2ea5_A Cell growth regulator w 99.1 3.4E-11 1.1E-15 69.2 3.9 46 69-122 13-59 (68)
60 3hcs_A TNF receptor-associated 99.1 2E-11 6.9E-16 82.2 2.9 51 69-123 16-67 (170)
61 2yu4_A E3 SUMO-protein ligase 99.1 3.5E-11 1.2E-15 73.5 3.1 52 69-123 5-65 (94)
62 1vyx_A ORF K3, K3RING; zinc-bi 99.1 6.6E-11 2.3E-15 66.3 3.8 50 69-121 4-59 (60)
63 2ecg_A Baculoviral IAP repeat- 99.1 5.5E-11 1.9E-15 69.6 3.0 44 71-122 25-69 (75)
64 2c2l_A CHIP, carboxy terminus 99.1 6.4E-11 2.2E-15 85.2 3.9 51 69-123 206-257 (281)
65 1wim_A KIAA0161 protein; ring 99.1 2.7E-11 9.2E-16 74.0 1.1 55 70-125 4-70 (94)
66 2yho_A E3 ubiquitin-protein li 99.0 7.2E-11 2.5E-15 69.8 1.1 44 71-122 18-62 (79)
67 2f42_A STIP1 homology and U-bo 99.0 2.3E-10 8E-15 77.4 3.4 52 69-124 104-156 (179)
68 2bay_A PRE-mRNA splicing facto 98.9 4.1E-10 1.4E-14 63.3 2.3 55 71-128 3-57 (61)
69 3t6p_A Baculoviral IAP repeat- 98.8 7.2E-10 2.5E-14 82.3 1.2 45 70-122 294-339 (345)
70 3htk_C E3 SUMO-protein ligase 98.8 1.9E-09 6.5E-14 76.6 2.9 52 70-124 180-235 (267)
71 3nw0_A Non-structural maintena 98.7 3.1E-08 1E-12 70.0 5.9 52 70-124 179-232 (238)
72 3vk6_A E3 ubiquitin-protein li 98.6 4.1E-08 1.4E-12 59.5 4.3 48 73-123 3-51 (101)
73 1wil_A KIAA1045 protein; ring 97.1 0.0017 5.8E-08 37.9 5.5 59 69-135 13-87 (89)
74 2lri_C Autoimmune regulator; Z 97.0 0.00075 2.6E-08 38.0 3.8 47 70-120 11-61 (66)
75 2ko5_A Ring finger protein Z; 96.8 0.00092 3.2E-08 39.8 2.9 50 68-122 25-74 (99)
76 2jun_A Midline-1; B-BOX, TRIM, 96.1 0.0047 1.6E-07 37.3 3.1 35 71-106 3-37 (101)
77 2l5u_A Chromodomain-helicase-D 95.8 0.0077 2.6E-07 33.1 3.0 46 69-118 9-58 (61)
78 1we9_A PHD finger family prote 95.5 0.0034 1.2E-07 34.8 0.7 50 69-118 4-58 (64)
79 1mm2_A MI2-beta; PHD, zinc fin 95.2 0.0061 2.1E-07 33.6 1.0 49 68-120 6-58 (61)
80 3u5n_A E3 ubiquitin-protein li 95.2 0.0036 1.2E-07 43.0 0.1 49 68-120 4-56 (207)
81 3o36_A Transcription intermedi 95.0 0.006 2.1E-07 41.1 0.7 47 70-120 3-53 (184)
82 1weo_A Cellulose synthase, cat 94.9 0.24 8.2E-06 29.1 7.3 54 70-123 15-72 (93)
83 2yql_A PHD finger protein 21A; 94.8 0.0029 9.8E-08 34.2 -0.9 46 68-117 6-55 (56)
84 2k16_A Transcription initiatio 94.8 0.008 2.8E-07 34.4 0.9 53 69-122 16-72 (75)
85 3lqh_A Histone-lysine N-methyl 94.7 0.014 4.6E-07 39.4 2.0 50 71-120 2-65 (183)
86 2l43_A N-teminal domain from h 94.6 0.012 4E-07 34.9 1.2 54 69-122 23-79 (88)
87 1f62_A Transcription factor WS 94.5 0.023 7.8E-07 29.9 2.2 44 73-117 2-49 (51)
88 2lbm_A Transcriptional regulat 94.5 0.071 2.4E-06 34.4 4.8 47 68-118 60-117 (142)
89 2ku3_A Bromodomain-containing 93.9 0.025 8.6E-07 32.1 1.6 49 69-117 14-65 (71)
90 2vpb_A Hpygo1, pygopus homolog 93.6 0.072 2.5E-06 29.6 3.2 35 69-103 6-41 (65)
91 1wep_A PHF8; structural genomi 93.6 0.16 5.5E-06 29.2 4.9 53 69-122 10-67 (79)
92 3v43_A Histone acetyltransfera 93.6 0.022 7.5E-07 35.2 1.2 45 73-117 63-111 (112)
93 2ysm_A Myeloid/lymphoid or mix 93.4 0.028 9.5E-07 34.6 1.3 39 68-107 4-42 (111)
94 2ro1_A Transcription intermedi 93.3 0.056 1.9E-06 36.6 2.9 46 71-120 2-51 (189)
95 3ql9_A Transcriptional regulat 93.3 0.13 4.6E-06 32.5 4.4 48 67-118 53-111 (129)
96 2puy_A PHD finger protein 21A; 93.1 0.0057 2E-07 33.5 -1.9 47 70-120 4-54 (60)
97 1fp0_A KAP-1 corepressor; PHD 93.0 0.056 1.9E-06 32.0 2.2 46 69-118 23-72 (88)
98 1xwh_A Autoimmune regulator; P 92.4 0.022 7.7E-07 31.7 -0.1 46 69-118 6-55 (66)
99 3m62_A Ubiquitin conjugation f 92.2 0.12 4.2E-06 43.0 4.0 53 69-125 889-942 (968)
100 3v43_A Histone acetyltransfera 91.5 0.46 1.6E-05 29.1 5.2 34 70-103 4-42 (112)
101 2e6r_A Jumonji/ARID domain-con 91.3 0.02 7E-07 34.1 -1.2 49 69-118 14-66 (92)
102 2lv9_A Histone-lysine N-methyl 91.0 0.11 3.9E-06 31.2 1.9 46 71-118 28-76 (98)
103 1wev_A Riken cDNA 1110020M19; 90.7 0.044 1.5E-06 32.4 -0.1 53 70-122 15-76 (88)
104 2kgg_A Histone demethylase jar 90.6 0.25 8.5E-06 26.0 2.9 44 73-116 4-52 (52)
105 2yt5_A Metal-response element- 90.5 0.18 6.3E-06 27.8 2.4 51 69-119 4-62 (66)
106 1z60_A TFIIH basal transcripti 90.4 0.23 7.9E-06 27.0 2.6 43 72-115 16-58 (59)
107 2ri7_A Nucleosome-remodeling f 90.3 0.14 4.7E-06 33.9 2.1 48 70-118 7-59 (174)
108 4gne_A Histone-lysine N-methyl 90.2 0.26 8.9E-06 30.2 3.1 45 68-118 12-62 (107)
109 3shb_A E3 ubiquitin-protein li 90.1 0.045 1.5E-06 31.5 -0.4 45 73-118 28-77 (77)
110 1wen_A Inhibitor of growth fam 88.4 0.58 2E-05 26.3 3.5 46 70-120 15-67 (71)
111 2e6s_A E3 ubiquitin-protein li 88.3 0.14 4.8E-06 29.4 0.8 45 72-117 27-76 (77)
112 2kwj_A Zinc finger protein DPF 87.6 0.43 1.5E-05 29.4 2.8 34 72-105 2-41 (114)
113 1wem_A Death associated transc 87.4 0.27 9.4E-06 27.9 1.7 48 70-119 15-71 (76)
114 2cs3_A Protein C14ORF4, MY039 87.2 1.4 5E-05 25.3 4.6 39 69-108 13-52 (93)
115 3asl_A E3 ubiquitin-protein li 86.7 0.15 5E-06 28.7 0.3 45 73-118 20-69 (70)
116 2xb1_A Pygopus homolog 2, B-ce 86.1 0.55 1.9E-05 28.5 2.7 50 71-120 3-63 (105)
117 1weu_A Inhibitor of growth fam 85.6 0.69 2.4E-05 27.4 2.8 45 70-119 35-86 (91)
118 3c6w_A P28ING5, inhibitor of g 82.9 0.38 1.3E-05 26.0 0.8 43 70-117 8-57 (59)
119 2vnf_A ING 4, P29ING4, inhibit 82.6 0.37 1.2E-05 26.2 0.7 43 70-117 9-58 (60)
120 1wfk_A Zinc finger, FYVE domai 82.1 1.4 4.7E-05 25.8 3.1 53 70-122 8-67 (88)
121 2ysm_A Myeloid/lymphoid or mix 82.0 0.21 7.1E-06 30.6 -0.6 45 73-118 56-104 (111)
122 3ask_A E3 ubiquitin-protein li 81.9 0.38 1.3E-05 33.4 0.7 45 73-118 176-225 (226)
123 1vfy_A Phosphatidylinositol-3- 81.4 1.3 4.5E-05 24.8 2.8 33 72-104 12-44 (73)
124 1wew_A DNA-binding family prot 81.1 0.8 2.7E-05 26.1 1.8 49 70-119 15-73 (78)
125 3a1b_A DNA (cytosine-5)-methyl 81.0 1.4 4.9E-05 28.8 3.1 37 68-108 76-114 (159)
126 1z2q_A LM5-1; membrane protein 80.8 1.5 5E-05 25.4 2.9 36 70-105 20-55 (84)
127 2yw8_A RUN and FYVE domain-con 80.6 1.5 5.1E-05 25.2 2.9 35 70-104 18-52 (82)
128 2kwj_A Zinc finger protein DPF 80.2 0.098 3.3E-06 32.3 -2.5 47 73-120 60-110 (114)
129 3t7l_A Zinc finger FYVE domain 80.0 1.2 4E-05 26.2 2.3 50 71-120 20-75 (90)
130 1joc_A EEA1, early endosomal a 79.6 1.3 4.5E-05 27.7 2.6 34 71-104 69-102 (125)
131 3o70_A PHD finger protein 13; 79.4 0.44 1.5E-05 26.5 0.3 47 69-117 17-66 (68)
132 2cu8_A Cysteine-rich protein 2 79.0 3.3 0.00011 22.9 4.0 43 70-123 8-50 (76)
133 1y02_A CARP2, FYVE-ring finger 78.6 0.24 8E-06 31.0 -1.1 49 71-119 19-67 (120)
134 2pv0_B DNA (cytosine-5)-methyl 78.3 2 6.9E-05 32.2 3.6 47 68-118 90-148 (386)
135 1zfo_A LAsp-1; LIM domain, zin 77.5 0.97 3.3E-05 20.9 1.1 28 71-101 3-30 (31)
136 1dvp_A HRS, hepatocyte growth 77.4 1.3 4.4E-05 30.4 2.3 34 71-104 161-194 (220)
137 3i2d_A E3 SUMO-protein ligase 77.1 1.9 6.5E-05 32.2 3.1 47 73-122 251-301 (371)
138 1x4u_A Zinc finger, FYVE domai 77.1 2 6.8E-05 24.8 2.7 35 70-104 13-47 (84)
139 1x4l_A Skeletal muscle LIM-pro 76.8 3.1 0.00011 22.7 3.4 42 71-122 5-48 (72)
140 1x61_A Thyroid receptor intera 76.8 4 0.00014 22.2 3.9 40 71-120 5-44 (72)
141 3zyq_A Hepatocyte growth facto 76.7 1.4 4.9E-05 30.4 2.3 35 71-105 164-198 (226)
142 1wyh_A SLIM 2, skeletal muscle 76.5 2.9 9.8E-05 22.8 3.2 42 71-122 5-46 (72)
143 2g6q_A Inhibitor of growth pro 76.3 0.86 2.9E-05 24.8 0.9 43 70-117 10-59 (62)
144 4fo9_A E3 SUMO-protein ligase 76.1 2.2 7.4E-05 31.7 3.2 48 73-123 217-268 (360)
145 1g47_A Pinch protein; LIM doma 76.1 2.4 8.2E-05 23.5 2.8 44 69-122 9-52 (77)
146 2co8_A NEDD9 interacting prote 76.1 3.8 0.00013 23.2 3.7 44 69-123 13-56 (82)
147 3f6q_B LIM and senescent cell 76.0 1.8 6.3E-05 23.5 2.3 43 70-122 10-52 (72)
148 2gmg_A Hypothetical protein PF 75.4 0.74 2.5E-05 28.0 0.5 27 92-123 72-98 (105)
149 1zbd_B Rabphilin-3A; G protein 74.3 2.2 7.5E-05 27.1 2.5 36 69-104 53-89 (134)
150 2o35_A Hypothetical protein DU 73.8 1.4 4.8E-05 26.4 1.4 12 96-107 42-53 (105)
151 3fyb_A Protein of unknown func 73.7 1.4 4.8E-05 26.4 1.4 12 96-107 41-52 (104)
152 1x4k_A Skeletal muscle LIM-pro 72.6 3.5 0.00012 22.4 2.9 42 71-122 5-46 (72)
153 1wee_A PHD finger family prote 72.6 1.6 5.3E-05 24.4 1.4 48 70-118 15-66 (72)
154 2a20_A Regulating synaptic mem 70.8 0.26 8.9E-06 26.6 -2.0 17 68-84 6-23 (62)
155 3mpx_A FYVE, rhogef and PH dom 70.5 0.88 3E-05 34.2 0.0 51 70-120 374-431 (434)
156 2dj7_A Actin-binding LIM prote 69.5 4.4 0.00015 22.8 2.9 40 70-120 14-53 (80)
157 1x68_A FHL5 protein; four-and- 68.8 6 0.0002 21.8 3.4 42 71-122 5-48 (76)
158 2dar_A PDZ and LIM domain prot 68.6 3.3 0.00011 23.8 2.2 43 69-123 23-65 (90)
159 1x64_A Alpha-actinin-2 associa 68.4 8.5 0.00029 21.9 4.1 43 69-123 23-65 (89)
160 1a7i_A QCRP2 (LIM1); LIM domai 66.9 1.6 5.5E-05 24.6 0.6 41 71-122 7-47 (81)
161 1wd2_A Ariadne-1 protein homol 64.9 1.1 3.7E-05 24.3 -0.4 37 72-108 7-47 (60)
162 2cor_A Pinch protein; LIM doma 64.8 9.2 0.00032 21.3 3.7 41 70-122 14-54 (79)
163 2jmi_A Protein YNG1, ING1 homo 64.8 1.8 6.2E-05 25.5 0.5 44 69-117 24-75 (90)
164 3mjh_B Early endosome antigen 64.2 2.3 7.7E-05 20.3 0.7 11 111-121 7-17 (34)
165 1m3v_A FLIN4, fusion of the LI 64.2 5.8 0.0002 24.2 2.9 51 72-124 33-84 (122)
166 2zet_C Melanophilin; complex, 64.0 3.3 0.00011 26.8 1.8 46 70-117 67-116 (153)
167 1iml_A CRIP, cysteine rich int 63.9 4.8 0.00016 22.2 2.3 42 70-116 26-68 (76)
168 1tac_A TAT protein; transcript 63.8 4.1 0.00014 23.5 1.9 32 88-130 18-49 (86)
169 2jne_A Hypothetical protein YF 63.8 2.2 7.6E-05 25.5 0.8 44 70-122 31-74 (101)
170 2egq_A FHL1 protein; LIM domai 63.1 8.3 0.00028 21.2 3.2 42 71-122 15-59 (77)
171 2jmo_A Parkin; IBR, E3 ligase, 63.1 1 3.4E-05 25.8 -0.8 20 92-113 55-74 (80)
172 2d8y_A Eplin protein; LIM doma 62.8 11 0.00037 21.6 3.8 41 71-122 15-55 (91)
173 3kqi_A GRC5, PHD finger protei 62.7 8.7 0.0003 21.4 3.2 52 70-122 9-65 (75)
174 2jvx_A NF-kappa-B essential mo 61.5 2.1 7.1E-05 19.5 0.3 13 109-121 3-15 (28)
175 2rsd_A E3 SUMO-protein ligase 61.5 0.73 2.5E-05 25.5 -1.5 45 72-117 11-64 (68)
176 2l4z_A DNA endonuclease RBBP8, 60.6 9.5 0.00032 23.5 3.4 39 71-120 61-99 (123)
177 1x62_A C-terminal LIM domain p 59.7 7.9 0.00027 21.5 2.7 40 70-121 14-53 (79)
178 2d8v_A Zinc finger FYVE domain 59.7 7.4 0.00025 21.4 2.4 34 68-106 5-39 (67)
179 2rgt_A Fusion of LIM/homeobox 59.3 9.1 0.00031 24.8 3.3 9 94-102 52-60 (169)
180 2d8x_A Protein pinch; LIM doma 59.0 5.3 0.00018 21.6 1.8 40 71-122 5-44 (70)
181 1nyp_A Pinch protein; LIM doma 58.4 11 0.00038 19.9 3.1 40 71-122 5-44 (66)
182 2d8z_A Four and A half LIM dom 58.2 17 0.00059 19.3 3.9 40 71-122 5-44 (70)
183 2ehe_A Four and A half LIM dom 57.9 11 0.00036 21.0 3.1 42 71-122 15-56 (82)
184 2xjy_A Rhombotin-2; oncoprotei 57.2 8.9 0.0003 23.5 2.9 50 70-121 28-78 (131)
185 2ct7_A Ring finger protein 31; 57.2 1.2 4.2E-05 25.8 -1.2 18 88-105 44-61 (86)
186 3o7a_A PHD finger protein 13 v 57.1 1.5 5.3E-05 22.7 -0.6 41 76-117 8-51 (52)
187 1rut_X Flinc4, fusion protein 55.5 7.7 0.00026 25.6 2.5 48 72-121 33-81 (188)
188 2iyb_E Testin, TESS, TES; LIM 54.8 8.8 0.0003 20.4 2.3 41 72-122 3-45 (65)
189 2pk7_A Uncharacterized protein 54.4 3.2 0.00011 23.1 0.3 17 105-121 4-20 (69)
190 3j1r_A Archaeal adhesion filam 53.1 14 0.00049 16.1 3.8 18 7-24 6-23 (26)
191 2jny_A Uncharacterized BCR; st 52.5 2.6 8.9E-05 23.4 -0.2 19 104-122 5-23 (67)
192 1wig_A KIAA1808 protein; LIM d 51.8 13 0.00045 20.3 2.7 37 72-120 6-42 (73)
193 2cur_A Skeletal muscle LIM-pro 51.5 12 0.00042 20.0 2.5 40 71-122 5-44 (69)
194 2jrp_A Putative cytoplasmic pr 51.2 9.2 0.00031 22.0 2.0 17 111-127 53-69 (81)
195 2jtn_A LIM domain-binding prot 49.7 11 0.00036 24.8 2.4 48 69-122 85-132 (182)
196 1x63_A Skeletal muscle LIM-pro 48.5 11 0.00039 20.9 2.1 42 71-122 15-56 (82)
197 2das_A Zinc finger MYM-type pr 47.9 26 0.00087 18.9 3.2 37 70-106 19-56 (62)
198 3pwf_A Rubrerythrin; non heme 47.5 13 0.00045 24.4 2.5 25 87-118 138-162 (170)
199 2kpi_A Uncharacterized protein 47.2 7.2 0.00025 20.6 1.0 14 70-83 9-22 (56)
200 2fiy_A Protein FDHE homolog; F 46.4 1.4 4.8E-05 32.0 -2.5 48 70-118 181-231 (309)
201 2cuq_A Four and A half LIM dom 45.9 22 0.00074 19.5 3.1 40 71-122 15-54 (80)
202 1vf5_E Protein PET L; photosyn 45.5 24 0.00081 16.4 3.4 23 1-23 1-23 (32)
203 2xqn_T Testin, TESS; metal-bin 44.7 45 0.0015 20.0 4.6 47 70-121 29-75 (126)
204 2ku7_A MLL1 PHD3-CYP33 RRM chi 43.7 44 0.0015 20.1 4.6 31 92-122 7-48 (140)
205 2cup_A Skeletal muscle LIM-pro 42.8 15 0.00051 21.3 2.1 30 71-102 66-95 (101)
206 2k9j_B Integrin beta-3; transm 42.7 32 0.0011 17.0 4.3 11 15-25 24-34 (43)
207 1v6g_A Actin binding LIM prote 42.6 12 0.00042 20.7 1.6 40 71-122 15-54 (81)
208 1loi_A Cyclic 3',5'-AMP specif 41.9 1.1 3.7E-05 19.2 -2.2 12 96-107 6-17 (26)
209 2jr6_A UPF0434 protein NMA0874 41.1 2.8 9.7E-05 23.3 -1.3 18 105-122 4-21 (68)
210 2akl_A PHNA-like protein PA012 40.8 16 0.00054 23.0 2.0 26 70-95 26-52 (138)
211 1j2o_A FLIN2, fusion of rhombo 40.4 26 0.00088 20.9 3.0 38 70-109 29-67 (114)
212 1b8t_A Protein (CRP1); LIM dom 40.0 20 0.00068 23.6 2.6 41 71-122 115-155 (192)
213 1oqw_A Fimbrial protein; type 39.8 43 0.0015 20.8 4.1 25 2-26 3-27 (144)
214 2dlo_A Thyroid receptor-intera 37.2 21 0.00071 19.7 2.1 40 71-122 15-54 (81)
215 2l3k_A Rhombotin-2, linker, LI 36.9 14 0.00047 22.5 1.3 36 70-107 35-70 (123)
216 1x3h_A Leupaxin; paxillin fami 36.6 24 0.00082 19.3 2.3 40 71-122 15-54 (80)
217 3sok_A Fimbrial protein; pilus 36.5 51 0.0018 20.8 4.1 26 2-27 3-28 (151)
218 3kv5_D JMJC domain-containing 36.4 28 0.00095 26.9 3.2 51 69-120 35-90 (488)
219 2js4_A UPF0434 protein BB2007; 36.3 3.1 0.00011 23.3 -1.6 17 106-122 5-21 (70)
220 3c5k_A HD6, histone deacetylas 36.2 29 0.00098 21.0 2.6 24 71-98 24-47 (109)
221 2hf1_A Tetraacyldisaccharide-1 36.0 2.8 9.6E-05 23.3 -1.8 14 109-122 8-21 (68)
222 1lko_A Rubrerythrin all-iron(I 35.8 15 0.00052 24.5 1.5 25 88-118 156-180 (191)
223 1yuz_A Nigerythrin; rubrythrin 34.9 25 0.00086 23.7 2.5 25 87-118 171-195 (202)
224 1l8d_A DNA double-strand break 34.4 11 0.00038 22.6 0.6 12 110-121 48-59 (112)
225 2k21_A Potassium voltage-gated 32.3 57 0.002 20.4 3.5 11 12-22 61-71 (138)
226 2hi2_A Fimbrial protein; type 30.6 34 0.0012 21.6 2.5 23 2-24 3-25 (158)
227 3vhs_A ATPase wrnip1; zinc fin 30.1 17 0.00057 15.9 0.6 13 110-122 7-19 (29)
228 3i1m_R 30S ribosomal protein S 29.8 14 0.00047 20.9 0.4 19 106-124 5-23 (75)
229 3arc_M Photosystem II reaction 28.7 54 0.0019 15.6 3.6 8 8-15 11-18 (36)
230 2k5r_A Uncharacterized protein 28.0 8.8 0.0003 22.9 -0.7 19 104-122 3-21 (97)
231 3mkr_B Coatomer subunit alpha; 27.0 92 0.0031 22.7 4.4 42 69-116 260-301 (320)
232 3mi9_C Protein TAT; P-TEFB, HI 25.7 24 0.00082 20.3 0.9 14 88-102 18-31 (86)
233 4b6d_A RAC GTPase-activating p 24.2 52 0.0018 17.5 2.1 34 70-103 18-51 (61)
234 2csz_A Synaptotagmin-like prot 23.1 53 0.0018 18.5 2.0 34 68-101 22-56 (76)
235 3ph0_C ASCG; type III secretio 22.2 58 0.002 17.3 1.9 18 93-110 17-36 (61)
236 4bbq_A Lysine-specific demethy 21.9 26 0.00089 21.0 0.6 45 73-117 61-113 (117)
237 3epz_A DNA (cytosine-5)-methyl 21.2 39 0.0013 23.9 1.4 17 109-125 18-34 (268)
238 3mv2_A Coatomer subunit alpha; 21.1 98 0.0033 22.6 3.6 41 70-116 270-310 (325)
239 2vrw_B P95VAV, VAV1, proto-onc 21.0 70 0.0024 23.5 2.9 34 70-104 356-391 (406)
240 2vqe_R 30S ribosomal protein S 20.2 42 0.0014 19.5 1.3 15 108-122 18-32 (88)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.87 E-value=5.5e-22 Score=121.38 Aligned_cols=83 Identities=25% Similarity=0.565 Sum_probs=73.6
Q ss_pred CCCCCCCCCCCChHHhhcCCeeeecccccCCCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccC
Q 032328 38 SGFAQGGFKMISSDDLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRT 117 (143)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~ 117 (143)
.........+++++.+..+|...+.........+..|+||+++|..++.+..+| |||.||..||.+|+..+.+||+||.
T Consensus 7 ~~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 7 HHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp CSCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred cCCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCc
Confidence 345666788899999999999998876666667889999999999999999999 9999999999999999999999999
Q ss_pred ccCC
Q 032328 118 RVSP 121 (143)
Q Consensus 118 ~i~~ 121 (143)
++..
T Consensus 86 ~~~~ 89 (91)
T 2l0b_A 86 MFPP 89 (91)
T ss_dssp BSSC
T ss_pred cCCC
Confidence 8865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-20 Score=110.55 Aligned_cols=69 Identities=39% Similarity=0.914 Sum_probs=58.1
Q ss_pred HhhcCCeeeecccccCCCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 52 DLKQIPCFEYKAAADRGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
.+.++|..+++... ...++..|+||++++..++.+..++ |+|.||..|+.+|+..+.+||+||.++...
T Consensus 5 ~i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 45567777766533 3346778999999999999999999 999999999999999999999999998765
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.77 E-value=2.9e-19 Score=99.23 Aligned_cols=51 Identities=45% Similarity=1.108 Sum_probs=46.6
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVS 120 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~ 120 (143)
++.+|+||++++..++.+..++.|||.||.+|+.+|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 467899999999998888888779999999999999999999999999874
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=7.5e-19 Score=104.33 Aligned_cols=58 Identities=36% Similarity=0.917 Sum_probs=51.8
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCccee
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGVI 127 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~~~ 127 (143)
.....|+||++.|..++.+..++ |+|.||..||.+|+..+.+||+||.++........
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 45678999999999988888888 99999999999999999999999999998765543
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.1e-19 Score=102.95 Aligned_cols=54 Identities=35% Similarity=0.859 Sum_probs=49.0
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
..+..|+||++.+..++.+..++ |+|.||..|+.+|+..+.+||+||.++....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 45678999999999998888888 9999999999999999899999999997653
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=8.8e-19 Score=101.67 Aligned_cols=54 Identities=37% Similarity=0.970 Sum_probs=49.1
Q ss_pred CCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
......|+||++.+..++.+..++ |||.||..|+.+|+..+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 346678999999999888888898 999999999999999999999999999875
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.6e-19 Score=106.06 Aligned_cols=55 Identities=24% Similarity=0.621 Sum_probs=44.2
Q ss_pred CCCccccccccccC-----------CCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCc
Q 032328 70 SPVDCVVCLENFRM-----------GDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKV 124 (143)
Q Consensus 70 ~~~~C~ICl~~~~~-----------~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~ 124 (143)
+++.|+||++++.+ ++.++.++.|||.||.+||.+|+..+.+||+||+++..+++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhc
Confidence 45668888887754 45556665699999999999999999999999999876643
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.69 E-value=1e-17 Score=97.52 Aligned_cols=57 Identities=25% Similarity=0.601 Sum_probs=48.3
Q ss_pred CCCCccccccccccCC----CeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcce
Q 032328 69 SSPVDCVVCLENFRMG----DKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGV 126 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~~ 126 (143)
.++..|+||++.+.++ +.+..++ |||.||..|+.+|+..+.+||+||.++...++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence 4567899999998763 5556777 9999999999999999999999999999776554
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.69 E-value=1.5e-17 Score=104.08 Aligned_cols=54 Identities=24% Similarity=0.519 Sum_probs=45.0
Q ss_pred CCCCccccccccccCC---------------CeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMG---------------DKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~---------------~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
.+++.|+||++.|.+. ..+..++ |+|.||.+||.+|+..+.+||+||+++..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~~ 103 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQK 103 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCEEE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcceeec
Confidence 3578899999998754 1355667 9999999999999999999999999976543
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.69 E-value=2.1e-17 Score=91.60 Aligned_cols=50 Identities=30% Similarity=0.725 Sum_probs=43.1
Q ss_pred CCCccccccccccCC-CeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccC
Q 032328 70 SPVDCVVCLENFRMG-DKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVS 120 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~-~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~ 120 (143)
.+..|+||++.+.++ +.+..++ |||.||.+|+.+|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 567899999999654 4466677 9999999999999999899999998874
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-17 Score=97.85 Aligned_cols=56 Identities=21% Similarity=0.500 Sum_probs=46.5
Q ss_pred cCCCCCCccccccccccCCCeeeEcCCCC-----CcccHHhHHHHHhCC--CCCccccCccCCCC
Q 032328 66 DRGSSPVDCVVCLENFRMGDKCRLLPNCR-----HSFHAQCIDSWLLKT--PICPICRTRVSPSK 123 (143)
Q Consensus 66 ~~~~~~~~C~ICl~~~~~~~~v~~l~~C~-----H~FH~~Ci~~wl~~~--~~CP~CR~~i~~~~ 123 (143)
....++..|.||++++.+++.+ ++| |+ |.||.+||++|+..+ .+||+||.++....
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3345678899999999877766 578 86 999999999999875 48999999998664
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=94.94 Aligned_cols=56 Identities=23% Similarity=0.588 Sum_probs=47.5
Q ss_pred CCCccccccccccCC----CeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcce
Q 032328 70 SPVDCVVCLENFRMG----DKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGV 126 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~~ 126 (143)
++..|+||++.+.++ +.+..++ |||.||.+|+.+|+..+.+||+||.++...++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccceee
Confidence 467899999998753 4556677 9999999999999999899999999999876554
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.68 E-value=8.3e-17 Score=102.01 Aligned_cols=54 Identities=28% Similarity=0.647 Sum_probs=43.7
Q ss_pred CCCccccccccccCCC---------------eeeEcCCCCCcccHHhHHHHH-----hCCCCCccccCccCCCCc
Q 032328 70 SPVDCVVCLENFRMGD---------------KCRLLPNCRHSFHAQCIDSWL-----LKTPICPICRTRVSPSKV 124 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~---------------~v~~l~~C~H~FH~~Ci~~wl-----~~~~~CP~CR~~i~~~~~ 124 (143)
.++.|+||++.|..+. .+..++ |+|.||.+||.+|+ ..+.+||+||..+.....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 4568999999997643 334666 99999999999999 456789999999987643
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=96.28 Aligned_cols=57 Identities=30% Similarity=0.743 Sum_probs=48.4
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcceeecC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGVILKD 130 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~~~~~~ 130 (143)
.+...|+||++.+.+ ..++ |||.||..|+.+|+..+..||+||.++...+.....++
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 69 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPSS 69 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCCC
Confidence 456789999999877 6677 99999999999999999999999999997765555443
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6e-17 Score=93.68 Aligned_cols=52 Identities=27% Similarity=0.668 Sum_probs=44.3
Q ss_pred CCCCccccccccccCC----CeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCC
Q 032328 69 SSPVDCVVCLENFRMG----DKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSP 121 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~ 121 (143)
.+...|+||++.+.+. +.+..++ |||.||..|+..|+..+..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999998763 4446677 99999999999999998999999998864
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=92.81 Aligned_cols=56 Identities=20% Similarity=0.399 Sum_probs=46.6
Q ss_pred CCCCccccccccccCCCeeeEc-CCCCCcccHHhHHHHHhCCCCCccccCccCCCCcceee
Q 032328 69 SSPVDCVVCLENFRMGDKCRLL-PNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGVIL 128 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l-~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~~~~ 128 (143)
.+...|+||++.+.+. ..+ + |||.||..||..|+..+..||+||..+...+.....
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 13 TPYILCSICKGYLIDA---TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CGGGSCTTTSSCCSSC---EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCCChHHHCc---CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 3567899999998874 444 6 999999999999999889999999999887655443
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.1e-17 Score=95.63 Aligned_cols=53 Identities=23% Similarity=0.567 Sum_probs=45.1
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVG 125 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~ 125 (143)
.++..|+||++.+.+. ..++ |||.||..|+..|+..+..||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 4567899999998664 5667 999999999999999999999999999865443
No 18
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.62 E-value=3.4e-17 Score=103.80 Aligned_cols=56 Identities=25% Similarity=0.568 Sum_probs=1.6
Q ss_pred CCCCccccccccccCC-------------C--eeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcc
Q 032328 69 SSPVDCVVCLENFRMG-------------D--KCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVG 125 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~-------------~--~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~ 125 (143)
..++.|+||+++|.+. + .+..++ |+|.||.+||.+|+..+.+||+||.++..+..+
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k~g 116 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 116 (117)
T ss_dssp CCC---------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeeeccC
Confidence 3568899999999752 1 222235 999999999999999999999999998766543
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.61 E-value=4.9e-16 Score=89.67 Aligned_cols=50 Identities=34% Similarity=0.849 Sum_probs=42.9
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
.+..|+||++.+.+ ....++ |||.||..|+.+|+..+.+||+||.++...
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 46789999999765 346677 999999999999999889999999998743
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=91.81 Aligned_cols=57 Identities=25% Similarity=0.627 Sum_probs=47.4
Q ss_pred CCCCccccccccccCCCe-eeEcCCCCCcccHHhHHHHHhCC---CCCccccCccCCCCcce
Q 032328 69 SSPVDCVVCLENFRMGDK-CRLLPNCRHSFHAQCIDSWLLKT---PICPICRTRVSPSKVGV 126 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~-v~~l~~C~H~FH~~Ci~~wl~~~---~~CP~CR~~i~~~~~~~ 126 (143)
.+...|+||++.|.+.+. ...++ |||.||..|+.+|+..+ ..||+||..+...++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~ 73 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQ 73 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTT
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHH
Confidence 456789999999988664 56677 99999999999999875 78999999988765443
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=88.80 Aligned_cols=52 Identities=27% Similarity=0.593 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh---CCCCCccccCccCCCCc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL---KTPICPICRTRVSPSKV 124 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~---~~~~CP~CR~~i~~~~~ 124 (143)
.+...|+||++.+.+. ..++ |||.||..|+..|+. ....||+||.++...++
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4567899999998763 5567 999999999999997 45679999999987654
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=86.90 Aligned_cols=51 Identities=22% Similarity=0.537 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh-CCCCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL-KTPICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~i~~~~ 123 (143)
.+...|+||++.+.++ ..++ |||.||..|+.+|+. .+..||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4567899999998875 3466 999999999999994 5678999999988764
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=88.84 Aligned_cols=52 Identities=23% Similarity=0.646 Sum_probs=42.5
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC--CCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT--PICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~--~~CP~CR~~i~~~~ 123 (143)
.+...|+||++.+.++ ..++.|||.||..||..|+..+ ..||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3567899999999875 4555599999999999999865 68999999866543
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=90.18 Aligned_cols=48 Identities=29% Similarity=0.669 Sum_probs=42.1
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVS 120 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~ 120 (143)
.....|+||++.+.++ ..++ |||.||..|+.+|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999998763 4567 9999999999999998899999999986
No 25
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.56 E-value=2.5e-15 Score=97.22 Aligned_cols=61 Identities=25% Similarity=0.573 Sum_probs=50.6
Q ss_pred CCCCccccccccccCC----CeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcceeecC
Q 032328 69 SSPVDCVVCLENFRMG----DKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGVILKD 130 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~~~~~~ 130 (143)
.+...|+||++.+.++ +.+..++ |||.||..||.+|+..+.+||+||..+...........
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 3567899999998764 5556777 99999999999999999999999999998876554433
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.55 E-value=6.1e-15 Score=84.32 Aligned_cols=58 Identities=24% Similarity=0.508 Sum_probs=45.8
Q ss_pred CCCccccccc-cccCCCee-eEcCCCCCcccHHhHHHHHhC-CCCCccccCccCCCCcceee
Q 032328 70 SPVDCVVCLE-NFRMGDKC-RLLPNCRHSFHAQCIDSWLLK-TPICPICRTRVSPSKVGVIL 128 (143)
Q Consensus 70 ~~~~C~ICl~-~~~~~~~v-~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~i~~~~~~~~~ 128 (143)
++..|+||++ .+.++... ..++ |||.||..|+.+|+.. ...||+||..+...++....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence 3567999999 77765443 3456 9999999999999765 46799999999988776554
No 27
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=85.82 Aligned_cols=50 Identities=22% Similarity=0.630 Sum_probs=42.7
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC--CCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT--PICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~--~~CP~CR~~i~~~ 122 (143)
..+.|+||.+.+..++... .|+|.||.+||.+||+.+ .+||+||.++..+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4578999999998765443 499999999999999887 7899999998755
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.54 E-value=3.3e-15 Score=97.71 Aligned_cols=49 Identities=35% Similarity=0.896 Sum_probs=42.8
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
+..|+||++.+.++ ..+| |||.||..||..|+..+.+||+||.++....
T Consensus 53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 45799999998764 6677 9999999999999999999999999987653
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=1.6e-14 Score=86.48 Aligned_cols=53 Identities=28% Similarity=0.565 Sum_probs=44.7
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC------CCCCccccCccCCCCcc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK------TPICPICRTRVSPSKVG 125 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~------~~~CP~CR~~i~~~~~~ 125 (143)
.++..|+||++.+.++ ..++ |||.||..|+..|+.. ...||+||..+...+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 4567899999998775 5677 9999999999999987 66799999999876443
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.52 E-value=1.2e-14 Score=85.95 Aligned_cols=51 Identities=16% Similarity=0.381 Sum_probs=43.9
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC-CCCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK-TPICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~i~~~~ 123 (143)
.+...|+||++.+.++ ..++ |||.||+.||.+|+.. +.+||+||.++...+
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 4567899999998875 5567 9999999999999987 788999999988654
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.52 E-value=5.2e-15 Score=87.69 Aligned_cols=51 Identities=29% Similarity=0.550 Sum_probs=43.4
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC-------CCCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK-------TPICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~-------~~~CP~CR~~i~~~~ 123 (143)
.+...|+||++.+.++ ..++ |||.||..|+..|+.. ...||+||..+...+
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 4567899999998775 4567 9999999999999986 567999999998754
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-14 Score=85.86 Aligned_cols=53 Identities=32% Similarity=0.699 Sum_probs=44.5
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC------CCCCccccCccCCCCcc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK------TPICPICRTRVSPSKVG 125 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~------~~~CP~CR~~i~~~~~~ 125 (143)
.+...|+||++.+.+. ..++ |||.||..|+..|+.. ...||+||..+...+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 4567899999998775 5567 9999999999999977 77899999999876443
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.50 E-value=7.8e-15 Score=90.88 Aligned_cols=51 Identities=29% Similarity=0.742 Sum_probs=42.9
Q ss_pred CCCccccccccccCCCeeeE-cCCCCCcccHHhHHHHHhCC-CCCccccCccCCCCc
Q 032328 70 SPVDCVVCLENFRMGDKCRL-LPNCRHSFHAQCIDSWLLKT-PICPICRTRVSPSKV 124 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~-l~~C~H~FH~~Ci~~wl~~~-~~CP~CR~~i~~~~~ 124 (143)
+...|+||++.+.++ .. ++ |||.||..||..|+... ..||+||.++...++
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 21 EVFRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 456899999998763 44 66 99999999999999887 689999999976543
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.48 E-value=2.1e-14 Score=88.71 Aligned_cols=50 Identities=26% Similarity=0.747 Sum_probs=42.6
Q ss_pred CCCccccccccccCCCeeeEc-CCCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLL-PNCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l-~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
+...|+||++.+.++ ..+ + |||.||..|+..|+..+..||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCCcccCChhhCCc---CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 356899999998863 444 6 9999999999999999899999999988643
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5e-14 Score=79.97 Aligned_cols=43 Identities=28% Similarity=0.630 Sum_probs=36.8
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh---CCCCCccc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL---KTPICPIC 115 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~---~~~~CP~C 115 (143)
.++..|+||++.+.++ ..++ |||.||..||.+|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567899999998875 5667 999999999999998 45689998
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.47 E-value=1.7e-14 Score=93.29 Aligned_cols=57 Identities=25% Similarity=0.601 Sum_probs=47.6
Q ss_pred CCCCccccccccccCC----CeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcce
Q 032328 69 SSPVDCVVCLENFRMG----DKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGV 126 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~----~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~~ 126 (143)
.+...|+||++.+.+. .....++ |||.||..|+.+|+..+.+||+||.++...++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhccee
Confidence 4567899999998753 3445666 9999999999999999999999999998876544
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.9e-14 Score=78.23 Aligned_cols=43 Identities=33% Similarity=0.880 Sum_probs=36.1
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh---CCCCCccc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL---KTPICPIC 115 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~---~~~~CP~C 115 (143)
.+...|+||++.+.++ ..++ |||.||..|+.+|+. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999875 5567 999999999999954 56779998
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.45 E-value=5e-14 Score=88.35 Aligned_cols=50 Identities=32% Similarity=0.713 Sum_probs=42.6
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
++..|+||++.+.++ +...+ |||.||..|+..|+..+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 467899999998763 33336 999999999999999989999999998865
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=83.65 Aligned_cols=49 Identities=24% Similarity=0.676 Sum_probs=40.8
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC--CCCccccCccC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT--PICPICRTRVS 120 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~--~~CP~CR~~i~ 120 (143)
.+...|+||++.+.++ ..++.|||.||..||..|+... ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4567899999999875 5555599999999999999653 58999999974
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=88.77 Aligned_cols=48 Identities=23% Similarity=0.537 Sum_probs=41.0
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCC-CCccccCccCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP-ICPICRTRVSP 121 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~-~CP~CR~~i~~ 121 (143)
+...|+||++.+.++ ..++ |||.||..||..|+..+. .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346799999998864 5567 999999999999998644 89999999976
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=1.3e-13 Score=86.77 Aligned_cols=51 Identities=24% Similarity=0.612 Sum_probs=42.7
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCC---CCccccCccCCCCcc
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP---ICPICRTRVSPSKVG 125 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~---~CP~CR~~i~~~~~~ 125 (143)
...|+||++.+.++ ..++ |||.||..|+..|+..+. .||+||..+......
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 45799999998765 4467 999999999999998753 799999999876543
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.41 E-value=5.2e-13 Score=78.91 Aligned_cols=56 Identities=21% Similarity=0.494 Sum_probs=43.3
Q ss_pred CCCCccccccccccCCCeee-EcCCCCCcccHHhHHHHHhC-CCCCccccCccCCCCcc
Q 032328 69 SSPVDCVVCLENFRMGDKCR-LLPNCRHSFHAQCIDSWLLK-TPICPICRTRVSPSKVG 125 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~-~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~i~~~~~~ 125 (143)
.++..|+||++.+...+... .++ |||.||..|+..++.. ...||.||+.+......
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 45678999999986543322 234 9999999999998754 56799999999987654
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.38 E-value=2.2e-13 Score=91.45 Aligned_cols=49 Identities=29% Similarity=0.647 Sum_probs=40.8
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC-CCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK-TPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~i~~~ 122 (143)
...|+||++.+.++ +..++ |||.||..|+..|+.. +..||+||..+...
T Consensus 54 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred CCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence 45899999998863 33346 9999999999999987 77899999998643
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.37 E-value=2.1e-13 Score=75.64 Aligned_cols=50 Identities=24% Similarity=0.566 Sum_probs=41.3
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVG 125 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~ 125 (143)
.+...|+||++.+.++ ..++ |||.||..|+..| ...||+||..+.....+
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~~ 53 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGADT 53 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSSC
T ss_pred ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeecCCcC
Confidence 3567899999999875 6677 9999999999874 56799999999876543
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.36 E-value=2.4e-13 Score=86.55 Aligned_cols=51 Identities=25% Similarity=0.547 Sum_probs=43.0
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCC-CCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP-ICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~-~CP~CR~~i~~~~ 123 (143)
.+...|+||++.+.++ ..++ |||.||..|+..|+.... .||+||..+....
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 3567899999998775 5567 999999999999998755 8999999988653
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.36 E-value=3.1e-13 Score=85.75 Aligned_cols=51 Identities=25% Similarity=0.546 Sum_probs=43.1
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC-CCCCccccCccCCCCcc
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK-TPICPICRTRVSPSKVG 125 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~i~~~~~~ 125 (143)
...|+||++.+.++ ..++ |||.||..|+.+|+.. ...||+||.++...+..
T Consensus 23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 46799999998764 4567 9999999999999987 67899999999876543
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.36 E-value=4.9e-13 Score=88.52 Aligned_cols=49 Identities=22% Similarity=0.495 Sum_probs=41.9
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCC-CCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP-ICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~-~CP~CR~~i~~~ 122 (143)
+...|+||++.+.++ ..++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 345799999998764 5577 999999999999998754 799999999876
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.35 E-value=4.2e-13 Score=76.41 Aligned_cols=48 Identities=21% Similarity=0.485 Sum_probs=40.0
Q ss_pred CCCccccccccccCCCeeeEc--CCCCCc-ccHHhHHHHHhCCCCCccccCccCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLL--PNCRHS-FHAQCIDSWLLKTPICPICRTRVSP 121 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l--~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~i~~ 121 (143)
++..|+||++...+. ..+ | |||. |+.+|+..|...+..||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 456899999985542 444 8 9998 8999999999988899999999863
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.34 E-value=4.7e-13 Score=100.15 Aligned_cols=52 Identities=29% Similarity=0.682 Sum_probs=43.8
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh-CCCCCccccCccCCCCc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL-KTPICPICRTRVSPSKV 124 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~-~~~~CP~CR~~i~~~~~ 124 (143)
.....|+||++.+.+ ...+| |||.||..|+..|+. ....||+||.++.....
T Consensus 330 ~~~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 330 STFQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp TSSSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 345789999999765 36677 999999999999998 67889999999987643
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.34 E-value=3.4e-13 Score=76.55 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=39.9
Q ss_pred CCCccccccccccCCCeeeEcCCCCCc-ccHHhHHHHHhCCCCCccccCccCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHS-FHAQCIDSWLLKTPICPICRTRVSP 121 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~i~~ 121 (143)
....|+||++...+. .+..+| |||. |+..|+..|......||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 456899999985542 112238 9997 9999999999888899999999864
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.32 E-value=2.9e-13 Score=85.70 Aligned_cols=48 Identities=38% Similarity=0.780 Sum_probs=41.1
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC-CCCCccccCccCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK-TPICPICRTRVSP 121 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~i~~ 121 (143)
++..|+||++.+.++ ..++ |||.||..|+..|+.. ...||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356799999998875 6667 9999999999999976 6689999999864
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.31 E-value=1.6e-12 Score=78.09 Aligned_cols=52 Identities=17% Similarity=0.129 Sum_probs=45.4
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKV 124 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~ 124 (143)
.....|+||++-|.++ +.++ |||.|++.||..|+..+.+||+||.++....+
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l 63 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESML 63 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhc
Confidence 4577899999999986 6677 99999999999999988899999999876543
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.31 E-value=1.6e-12 Score=80.33 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=46.3
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVG 125 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~ 125 (143)
.....|+||++-|.++ +.++ |||.|++.||..|+..+.+||+||.++...++.
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence 4567899999999986 6777 999999999999999889999999999876543
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.31 E-value=6.4e-13 Score=87.06 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=42.4
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCC-CCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP-ICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~-~CP~CR~~i~~~~ 123 (143)
.+...|+||++.+.++ ..++ |||.||..||..|+.... .||+||.++...+
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 80 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCCT
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccccc
Confidence 4567899999999876 5566 999999999999998654 7999999876543
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.30 E-value=3.9e-12 Score=78.31 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=46.0
Q ss_pred CCCCccccccccccCCCeeeEcCCCC-CcccHHhHHHHHhCCCCCccccCccCCCCcc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCR-HSFHAQCIDSWLLKTPICPICRTRVSPSKVG 125 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~-H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~ 125 (143)
.++..|+||++-|.++ ++++ || |.|++.||.+|+..+.+||+||.++....+.
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhce
Confidence 4567899999999986 6677 99 9999999999999888999999999876543
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=1.5e-12 Score=82.68 Aligned_cols=48 Identities=25% Similarity=0.547 Sum_probs=40.6
Q ss_pred CCCccccccccccCCCeeeEc-CCCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLL-PNCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l-~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
+...|+||++.+.++ ..+ + |||.||..||..|+. ..||+||..+...+
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 457899999999775 555 6 999999999999987 77999999986543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.20 E-value=3.3e-12 Score=74.70 Aligned_cols=45 Identities=24% Similarity=0.578 Sum_probs=37.6
Q ss_pred CCCccccccccccCCCeeeEcCCCCCc-ccHHhHHHHHhCCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHS-FHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
++..|+||++.+.+. ..+| |||. ||..|+..| ..||+||..+...
T Consensus 23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 346899999996653 6678 9998 999999998 7899999998754
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.20 E-value=3.3e-12 Score=93.60 Aligned_cols=54 Identities=24% Similarity=0.640 Sum_probs=41.6
Q ss_pred CCCCccccccccccCCCeee----EcCCCCCcccHHhHHHHHhCC-----------CCCccccCccCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCR----LLPNCRHSFHAQCIDSWLLKT-----------PICPICRTRVSPS 122 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~----~l~~C~H~FH~~Ci~~wl~~~-----------~~CP~CR~~i~~~ 122 (143)
....+|+||++.+.++..+. ..+.|||.||..|+.+|++.. .+||+||.++...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 45778999999988744333 223599999999999999752 4699999988743
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.4e-11 Score=69.24 Aligned_cols=46 Identities=39% Similarity=0.812 Sum_probs=38.1
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCc-ccHHhHHHHHhCCCCCccccCccCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHS-FHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
.+...|.||++...+ +..+| |||. |+..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 456789999998544 57788 9998 99999984 47899999998864
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.13 E-value=2e-11 Score=82.21 Aligned_cols=51 Identities=25% Similarity=0.550 Sum_probs=42.8
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC-CCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT-PICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~-~~CP~CR~~i~~~~ 123 (143)
.+...|+||++.+.++ +.++ |||.||..|+.+|+... ..||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 4567899999998875 5567 99999999999999764 48999999988653
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=3.5e-11 Score=73.51 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=41.0
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC------CCCcc--ccCc-cCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT------PICPI--CRTR-VSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~------~~CP~--CR~~-i~~~~ 123 (143)
.....|+||++.|.++ +.++.|||.|++.||..|+..+ .+||+ |+.. +...+
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 3567899999999874 4553499999999999999753 47999 9876 65443
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.10 E-value=6.6e-11 Score=66.27 Aligned_cols=50 Identities=22% Similarity=0.620 Sum_probs=37.7
Q ss_pred CCCCccccccccccCCCeeeEcC-CCCC---cccHHhHHHHHhC--CCCCccccCccCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLP-NCRH---SFHAQCIDSWLLK--TPICPICRTRVSP 121 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~-~C~H---~FH~~Ci~~wl~~--~~~CP~CR~~i~~ 121 (143)
++...|.||+++.. +.+ ++| .|+| .||.+|+.+|+.. +.+||+||.++..
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 35678999999833 333 577 3445 9999999999975 5779999988753
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.5e-11 Score=69.62 Aligned_cols=44 Identities=25% Similarity=0.609 Sum_probs=36.1
Q ss_pred CCccccccccccCCCeeeEcCCCCCc-ccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHS-FHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+||++.+.+. ..+| |||. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 45799999997653 5677 9998 99999965 37899999998764
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=6.4e-11 Score=85.20 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=43.2
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC-CCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT-PICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~-~~CP~CR~~i~~~~ 123 (143)
.....|+||++-|.++ ++++ |||.|++.||..|+... .+||+||.++...+
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 4567899999999886 6677 99999999999999864 45999999997554
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=2.7e-11 Score=73.96 Aligned_cols=55 Identities=16% Similarity=0.561 Sum_probs=43.7
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC--------CCCCcc--ccCc--cCCCCcc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK--------TPICPI--CRTR--VSPSKVG 125 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~--------~~~CP~--CR~~--i~~~~~~ 125 (143)
+...|+||++++..++.+...+ |||.||..|+.+++.. ...||. ||.. +....+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~ 70 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE 70 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH
Confidence 4568999999998876666667 9999999999999853 236999 9998 6654443
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.99 E-value=7.2e-11 Score=69.83 Aligned_cols=44 Identities=32% Similarity=0.746 Sum_probs=36.9
Q ss_pred CCccccccccccCCCeeeEcCCCCCc-ccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHS-FHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
+..|+||++...+ ...+| |||. |+..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 4579999998654 47778 9998 999999876 4899999999875
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.98 E-value=2.3e-10 Score=77.39 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=43.7
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC-CCCccccCccCCCCc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT-PICPICRTRVSPSKV 124 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~-~~CP~CR~~i~~~~~ 124 (143)
.....|+||++-|.++ ++++ |||.|++.||..|+..+ .+||+||.++....+
T Consensus 104 p~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred cHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 4567899999999985 6667 99999999999999864 469999999876543
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.92 E-value=4.1e-10 Score=63.26 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=45.4
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcceee
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGVIL 128 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~~~~ 128 (143)
...|+|+++.+.++ .+.+.+||.|.+.||.+|+..+.+||+.+.++...++....
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 45799999999875 55523999999999999999888899999999887766543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.82 E-value=7.2e-10 Score=82.27 Aligned_cols=45 Identities=29% Similarity=0.671 Sum_probs=37.8
Q ss_pred CCCccccccccccCCCeeeEcCCCCCc-ccHHhHHHHHhCCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHS-FHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~-FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
++..|+||++.+.+. ..+| |||. ||..|+..| ..||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 457899999997653 6678 9998 999999987 6799999998743
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.9e-09 Score=76.56 Aligned_cols=52 Identities=21% Similarity=0.446 Sum_probs=41.0
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC--CCCcc--ccCccCCCCc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT--PICPI--CRTRVSPSKV 124 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~--~~CP~--CR~~i~~~~~ 124 (143)
....|+||++.|.++ +....|||.|++.||.+|+..+ ..||+ ||..+...+.
T Consensus 180 ~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 180 IELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred eeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 455799999999774 3332399999999999999764 46999 9998876543
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.68 E-value=3.1e-08 Score=70.00 Aligned_cols=52 Identities=17% Similarity=0.435 Sum_probs=43.2
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCC--CCccccCccCCCCc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP--ICPICRTRVSPSKV 124 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~--~CP~CR~~i~~~~~ 124 (143)
....|+||.+-...+ ...+.|+|.||..|+..|++.+. .||.|+..+.-+..
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 467899999998877 44455999999999999998754 79999999876643
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.61 E-value=4.1e-08 Score=59.46 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=37.7
Q ss_pred ccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC-CCCCccccCccCCCC
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK-TPICPICRTRVSPSK 123 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~-~~~CP~CR~~i~~~~ 123 (143)
-|.+|--++.. -.++.| |+|.|+.+|+..|.+. .+.||.||.++..-+
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 37777766543 347788 9999999999999854 688999999998653
No 73
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.07 E-value=0.0017 Score=37.89 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=36.4
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHH------------HhCC----CCCccccCccCCCCcceeecCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSW------------LLKT----PICPICRTRVSPSKVGVILKDGS 132 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~w------------l~~~----~~CP~CR~~i~~~~~~~~~~~~~ 132 (143)
..++.|.||-.- ..++...-. -|+-.||..|+.+. +..+ =+||.| ++++..+.+..
T Consensus 13 ~~D~~C~VC~~~-t~~~l~pCR-vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C------enL~lLLtEeE 84 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAESLFPCR-VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC------DNINLLLTEES 84 (89)
T ss_dssp CCSCCCTTTCCC-CSSCCSSCS-SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT------CCCCSSSCCCC
T ss_pred CCCcccCccccc-cccceeccc-cccccccHhhcccccccccHHHHHHHHccCCCCCcccccc------chhhhhcchhh
Confidence 467889999732 223222222 38999999999996 2222 249999 44555555554
Q ss_pred CCC
Q 032328 133 SVS 135 (143)
Q Consensus 133 ~~~ 135 (143)
-.+
T Consensus 85 ~~~ 87 (89)
T 1wil_A 85 GPS 87 (89)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.05 E-value=0.00075 Score=37.95 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=34.4
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCC----CCccccCccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP----ICPICRTRVS 120 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~----~CP~CR~~i~ 120 (143)
....|.||.+. ++ +.....|...||..|+.+.+.... .||.|+....
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 45679999854 44 444446899999999998876543 4999976544
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.80 E-value=0.00092 Score=39.82 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=40.1
Q ss_pred CCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
.-....|..|+.+.+ .++.. ..|.+|..|+...+.....||+|..++...
T Consensus 25 ~~G~~nCKsCWf~~k---~LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK---GLVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS---SEEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccC---Ceeee--cchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 345668999999844 33431 469999999999999999999999998866
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.07 E-value=0.0047 Score=37.30 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=25.4
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHH
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWL 106 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl 106 (143)
+..|.||.+.+..+....-++ |+|.|+..|+..+.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHh
Confidence 467999998754333333366 99999999999843
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.83 E-value=0.0077 Score=33.14 Aligned_cols=46 Identities=28% Similarity=0.636 Sum_probs=32.1
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccCc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRTR 118 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~ 118 (143)
..+..|.+|.+. + .+.....|...||..|+..=+... -.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999874 3 344444588899999998754332 249999653
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.48 E-value=0.0034 Score=34.82 Aligned_cols=50 Identities=24% Similarity=0.481 Sum_probs=35.2
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh-----CCCCCccccCc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL-----KTPICPICRTR 118 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~-----~~~~CP~CR~~ 118 (143)
.+...|++|...+.++...+....|..=||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999999875555555446888999999854221 24569999764
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=95.18 E-value=0.0061 Score=33.57 Aligned_cols=49 Identities=24% Similarity=0.541 Sum_probs=32.8
Q ss_pred CCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccCccC
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRTRVS 120 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~i~ 120 (143)
..++..|.+|.+. ++ +.....|...||..|+.+=+... -.||.|+....
T Consensus 6 d~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 3457789999864 33 33333588899999998644432 24999976543
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=95.17 E-value=0.0036 Score=43.04 Aligned_cols=49 Identities=29% Similarity=0.498 Sum_probs=35.3
Q ss_pred CCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccCccC
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRTRVS 120 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~i~ 120 (143)
..+++.|.+|.+. + .+.....|...||..|+.+-+... -.||.|+..-.
T Consensus 4 d~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3467789999865 3 345555688999999998766543 34999987544
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=94.96 E-value=0.006 Score=41.09 Aligned_cols=47 Identities=28% Similarity=0.518 Sum_probs=34.3
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccCccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRTRVS 120 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~i~ 120 (143)
+++.|.+|.+. ++ +.....|...||..|+.+-+... -.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 56789999865 44 44444688999999998766543 34999987654
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=94.88 E-value=0.24 Score=29.12 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=36.9
Q ss_pred CCCcccccccccc---CCCeeeEcCCCCCcccHHhHHHHH-hCCCCCccccCccCCCC
Q 032328 70 SPVDCVVCLENFR---MGDKCRLLPNCRHSFHAQCIDSWL-LKTPICPICRTRVSPSK 123 (143)
Q Consensus 70 ~~~~C~ICl~~~~---~~~~v~~l~~C~H~FH~~Ci~~wl-~~~~~CP~CR~~i~~~~ 123 (143)
....|.||-+++- +++.......|+---|+.|.+-=. ..++.||-|+.+....+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~k 72 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLR 72 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCT
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccccc
Confidence 5678999999963 233322222466667889987644 34788999999987553
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.85 E-value=0.0029 Score=34.25 Aligned_cols=46 Identities=30% Similarity=0.737 Sum_probs=31.5
Q ss_pred CCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCC----CCccccC
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP----ICPICRT 117 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~----~CP~CR~ 117 (143)
..++..|.+|.+. ++ +.....|...||..|+.+=+...+ .||.|+.
T Consensus 6 ~~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4467789999975 33 344446889999999986444322 3888854
No 84
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=94.83 E-value=0.008 Score=34.40 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=36.2
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC----CCCCccccCccCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK----TPICPICRTRVSPS 122 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~i~~~ 122 (143)
.+...|.+|..... ++.++....|..-||..|+..-... .-.||.|+..+...
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 45567999988754 3444444468899999999754432 34599998776543
No 85
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=94.73 E-value=0.014 Score=39.44 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=36.0
Q ss_pred CCccccccccccCCCe---eeEcCCCCCcccHHhHHH------HHh-----CCCCCccccCccC
Q 032328 71 PVDCVVCLENFRMGDK---CRLLPNCRHSFHAQCIDS------WLL-----KTPICPICRTRVS 120 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~---v~~l~~C~H~FH~~Ci~~------wl~-----~~~~CP~CR~~i~ 120 (143)
+..|+||...|.+++. ++....|..=||..|..- -+. ....||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 4579999999988763 555556999999999732 111 1567999987644
No 86
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=94.56 E-value=0.012 Score=34.94 Aligned_cols=54 Identities=13% Similarity=0.362 Sum_probs=35.6
Q ss_pred CCCCccccccccc-cCCCeeeEcCCCCCcccHHhHHHHHhC--CCCCccccCccCCC
Q 032328 69 SSPVDCVVCLENF-RMGDKCRLLPNCRHSFHAQCIDSWLLK--TPICPICRTRVSPS 122 (143)
Q Consensus 69 ~~~~~C~ICl~~~-~~~~~v~~l~~C~H~FH~~Ci~~wl~~--~~~CP~CR~~i~~~ 122 (143)
.++..|.||.+.- .+++.+.....|.-.||..|+..=... .-.||.|+......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 4567899999763 233455555568889999999753222 23499997655443
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.48 E-value=0.023 Score=29.86 Aligned_cols=44 Identities=32% Similarity=0.654 Sum_probs=29.2
Q ss_pred ccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccC
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRT 117 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~ 117 (143)
.|.+|...-.. +.+..-..|...||..|+.+=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48888876433 3444444688999999997644332 23999964
No 88
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=94.48 E-value=0.071 Score=34.40 Aligned_cols=47 Identities=26% Similarity=0.464 Sum_probs=33.9
Q ss_pred CCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh-----------CCCCCccccCc
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL-----------KTPICPICRTR 118 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~-----------~~~~CP~CR~~ 118 (143)
...++.|.+|.+- ++-+- ...|-..||..|+.+-+. ..-.||.|+..
T Consensus 60 Dg~~d~C~vC~~G---G~Llc-CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLIC-CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEE-CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEe-CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4567899999987 55443 334889999999997652 12359999743
No 89
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=93.86 E-value=0.025 Score=32.08 Aligned_cols=49 Identities=14% Similarity=0.409 Sum_probs=32.9
Q ss_pred CCCCccccccccc-cCCCeeeEcCCCCCcccHHhHHHHHhC--CCCCccccC
Q 032328 69 SSPVDCVVCLENF-RMGDKCRLLPNCRHSFHAQCIDSWLLK--TPICPICRT 117 (143)
Q Consensus 69 ~~~~~C~ICl~~~-~~~~~v~~l~~C~H~FH~~Ci~~wl~~--~~~CP~CR~ 117 (143)
.++..|.||.+.- .+++.+.....|.-.||..|+..=... .-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4677899998763 334455555578899999999753211 224888864
No 90
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=93.64 E-value=0.072 Score=29.58 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=27.0
Q ss_pred CCCCccccccccccCCCeeeEcC-CCCCcccHHhHH
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLP-NCRHSFHAQCID 103 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~-~C~H~FH~~Ci~ 103 (143)
.....|++|...+.+++..+... .|.-=||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 34568999999998877777766 688999999963
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.63 E-value=0.16 Score=29.16 Aligned_cols=53 Identities=25% Similarity=0.528 Sum_probs=35.0
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHH-----hCCCCCccccCccCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWL-----LKTPICPICRTRVSPS 122 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl-----~~~~~CP~CR~~i~~~ 122 (143)
.....| ||...+.++...+....|..=||..|+.--. .....||.|+..-...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~ 67 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPS 67 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSC
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCC
Confidence 345567 9999886444445544688899999984211 1245699998765443
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=93.62 E-value=0.022 Score=35.21 Aligned_cols=45 Identities=31% Similarity=0.690 Sum_probs=31.0
Q ss_pred ccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccC
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRT 117 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~ 117 (143)
.|.+|.+.-.+++.+..-..|...||..|+.+-+... =.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6888887533334455555689999999997655442 24999975
No 93
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.38 E-value=0.028 Score=34.61 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=27.2
Q ss_pred CCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL 107 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~ 107 (143)
..+++.|.+|.+.-+.++ +..-..|+..||..|+...+.
T Consensus 4 ~~~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccc
Confidence 346788999988733222 233345999999999987664
No 94
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=93.32 E-value=0.056 Score=36.55 Aligned_cols=46 Identities=26% Similarity=0.541 Sum_probs=31.6
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC----CCCCccccCccC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK----TPICPICRTRVS 120 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~----~~~CP~CR~~i~ 120 (143)
++.|.+|.+. ++ +.....|...||..|+.+=+.. .-.||.|+..-.
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSCC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCCC
Confidence 4679999966 44 3333358889999999764433 224999987644
No 95
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=93.29 E-value=0.13 Score=32.53 Aligned_cols=48 Identities=25% Similarity=0.475 Sum_probs=33.0
Q ss_pred CCCCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHH------h-----CCCCCccccCc
Q 032328 67 RGSSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWL------L-----KTPICPICRTR 118 (143)
Q Consensus 67 ~~~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl------~-----~~~~CP~CR~~ 118 (143)
+...++.|.+|-+- ++ +.....|-..||.+|+.+-+ . ..=.|++|+-.
T Consensus 53 ~Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 53 SDGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TTSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34567789999976 43 33334588999999999752 1 12359999654
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=93.14 E-value=0.0057 Score=33.51 Aligned_cols=47 Identities=28% Similarity=0.634 Sum_probs=32.7
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccCccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRTRVS 120 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~i~ 120 (143)
++..|.+|... ++ +.....|...||..|+.+=+... -.||.|+....
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 56789999975 43 34444688999999998644432 23999976544
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.99 E-value=0.056 Score=31.95 Aligned_cols=46 Identities=30% Similarity=0.661 Sum_probs=32.7
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCC----CCccccCc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTP----ICPICRTR 118 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~----~CP~CR~~ 118 (143)
.+++.|.+|.+. ++ +.....|.-.||..|+.+=+...+ .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 467789999976 43 344445888999999977554422 49999754
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=92.42 E-value=0.022 Score=31.73 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=31.9
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccCc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRTR 118 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~ 118 (143)
.++..|.+|.+. ++ +.....|...||..|+.+=+... -.||.|+..
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 357789999975 43 34444588899999998644432 249999653
No 99
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.25 E-value=0.12 Score=42.99 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=45.2
Q ss_pred CCCCccccccccccCCCeeeEcCCCC-CcccHHhHHHHHhCCCCCccccCccCCCCcc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCR-HSFHAQCIDSWLLKTPICPICRTRVSPSKVG 125 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~-H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~ 125 (143)
++...|+|-++-|.++ +++| -| +.|-+..|.+|+..+.+||+=|.++...++.
T Consensus 889 P~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~li 942 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVT 942 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCE
T ss_pred cHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccccc
Confidence 5667899999999987 7777 77 5899999999999999999999988866443
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.52 E-value=0.46 Score=29.11 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCccccccccc-----cCCCeeeEcCCCCCcccHHhHH
Q 032328 70 SPVDCVVCLENF-----RMGDKCRLLPNCRHSFHAQCID 103 (143)
Q Consensus 70 ~~~~C~ICl~~~-----~~~~~v~~l~~C~H~FH~~Ci~ 103 (143)
....|.+|+..- ..++.+..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456799998753 1234455555699999999995
No 101
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.32 E-value=0.02 Score=34.14 Aligned_cols=49 Identities=24% Similarity=0.410 Sum_probs=33.4
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccCc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRTR 118 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~ 118 (143)
.+...|.||...-.. +.+.....|...||..|+.+=+... -.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 355679999987433 3444444688999999998544332 239999764
No 102
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=90.95 E-value=0.11 Score=31.21 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=30.0
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC---CCCCccccCc
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK---TPICPICRTR 118 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~---~~~CP~CR~~ 118 (143)
...| ||-.....+.. +....|.--||..|+..=... ...||.|+..
T Consensus 28 ~vrC-iC~~~~~~~~m-i~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYM-ICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp BCCC-TTSCCSCSSCE-EEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CEEe-ECCCccCCCcE-EEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 3457 88877655543 444458999999998652222 2359999743
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.71 E-value=0.044 Score=32.36 Aligned_cols=53 Identities=19% Similarity=0.432 Sum_probs=36.5
Q ss_pred CCCccccccccccC-CCeeeEcCCCCCcccHHhHHHHHh--------CCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRM-GDKCRLLPNCRHSFHAQCIDSWLL--------KTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~wl~--------~~~~CP~CR~~i~~~ 122 (143)
.+..|.+|...-.. ++.+.....|...||..|+.+=+. ..-.||.|+......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 35679999976433 244555557899999999987543 123499998766544
No 104
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=90.58 E-value=0.25 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=30.2
Q ss_pred ccccccccccCCCeeeEcC-CCCCcccHHhHHHH----HhCCCCCcccc
Q 032328 73 DCVVCLENFRMGDKCRLLP-NCRHSFHAQCIDSW----LLKTPICPICR 116 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~w----l~~~~~CP~CR 116 (143)
.|.+|...+.+++..+.-. .|..=||..|+.-- ...+..||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988887666666655 58889999996421 12456799885
No 105
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=90.45 E-value=0.18 Score=27.75 Aligned_cols=51 Identities=18% Similarity=0.484 Sum_probs=34.3
Q ss_pred CCCCcccccccccc-CCCeeeEcCCCCCcccHHhHHHHHh-------CCCCCccccCcc
Q 032328 69 SSPVDCVVCLENFR-MGDKCRLLPNCRHSFHAQCIDSWLL-------KTPICPICRTRV 119 (143)
Q Consensus 69 ~~~~~C~ICl~~~~-~~~~v~~l~~C~H~FH~~Ci~~wl~-------~~~~CP~CR~~i 119 (143)
.++..|.+|..... ++..+.....|...||..|+.+=+. ..-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 45678999998643 2344555556889999999876331 223499986543
No 106
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=90.36 E-value=0.23 Score=26.99 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=31.4
Q ss_pred CccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccc
Q 032328 72 VDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPIC 115 (143)
Q Consensus 72 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~C 115 (143)
..|--|...+.+. .....+.|++.|+.+|=.---..--+||-|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4599999998643 335567899999999975444445679988
No 107
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=90.27 E-value=0.14 Score=33.91 Aligned_cols=48 Identities=17% Similarity=0.517 Sum_probs=33.6
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHH-----hCCCCCccccCc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWL-----LKTPICPICRTR 118 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl-----~~~~~CP~CR~~ 118 (143)
+...| +|.....++...+....|..-||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45679 9998876555555555688999999984211 124569999864
No 108
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=90.23 E-value=0.26 Score=30.15 Aligned_cols=45 Identities=22% Similarity=0.605 Sum_probs=29.2
Q ss_pred CCCCCccccccccccCCCeeeEcC--CCCCcccHHhHHHHHhCCC----CCccccCc
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLP--NCRHSFHAQCIDSWLLKTP----ICPICRTR 118 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~wl~~~~----~CP~CR~~ 118 (143)
..+++.|.+|.+. + .+..-. .|...||..|+. +...+ .||.|+-.
T Consensus 12 ~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 12 QMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp CSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 3567889999843 3 344433 487899999997 44322 38866533
No 109
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=90.09 E-value=0.045 Score=31.53 Aligned_cols=45 Identities=31% Similarity=0.608 Sum_probs=28.1
Q ss_pred ccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC-----CCCccccCc
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT-----PICPICRTR 118 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~-----~~CP~CR~~ 118 (143)
.|.+|...-.. +.+..-..|...||..|+.+-+... =.||.|+++
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 46677655322 3344444688999999998765442 359999753
No 110
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=88.43 E-value=0.58 Score=26.31 Aligned_cols=46 Identities=28% Similarity=0.626 Sum_probs=28.8
Q ss_pred CCCccccccccccCCCeeeEcCC--CC-CcccHHhHHHHHhC----CCCCccccCccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPN--CR-HSFHAQCIDSWLLK----TPICPICRTRVS 120 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~wl~~----~~~CP~CR~~i~ 120 (143)
+...| ||-.... ++ ++.... |. .-||..|+. +.. +-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 45568 8987643 33 333334 55 689999997 433 234999976543
No 111
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.29 E-value=0.14 Score=29.40 Aligned_cols=45 Identities=29% Similarity=0.580 Sum_probs=29.6
Q ss_pred CccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC-----CCCCccccC
Q 032328 72 VDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK-----TPICPICRT 117 (143)
Q Consensus 72 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~-----~~~CP~CR~ 117 (143)
..|.+|...-.. ..+..-..|...||..|+.+=+.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378999865333 334444468899999999864433 224888864
No 112
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=87.63 E-value=0.43 Score=29.39 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=23.4
Q ss_pred Ccccccccccc------CCCeeeEcCCCCCcccHHhHHHH
Q 032328 72 VDCVVCLENFR------MGDKCRLLPNCRHSFHAQCIDSW 105 (143)
Q Consensus 72 ~~C~ICl~~~~------~~~~v~~l~~C~H~FH~~Ci~~w 105 (143)
+.|.+|+..-. +++.+..-..|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 56999987541 12344544469999999998754
No 113
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=87.39 E-value=0.27 Score=27.91 Aligned_cols=48 Identities=21% Similarity=0.429 Sum_probs=31.4
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHH---------HhCCCCCccccCcc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSW---------LLKTPICPICRTRV 119 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~w---------l~~~~~CP~CR~~i 119 (143)
+...| ||...+..+.. +....|..=||..|+.-- ......||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~~~M-I~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFM-ICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSSCE-EECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCCCCE-EEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 34567 89888764333 333458899999998421 12457799997543
No 114
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.20 E-value=1.4 Score=25.32 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=29.7
Q ss_pred CCCCccccccccccCCCeeeEcC-CCCCcccHHhHHHHHhC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLP-NCRHSFHAQCIDSWLLK 108 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~wl~~ 108 (143)
...-.|.+|.+.+++..-|. .| .=.|-||..|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQ-CPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEE-CSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceee-CCCccCCeeeccccHHHHHh
Confidence 45668999999998865544 33 33699999999998865
No 115
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=86.70 E-value=0.15 Score=28.72 Aligned_cols=45 Identities=31% Similarity=0.614 Sum_probs=28.3
Q ss_pred ccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC-----CCCCccccCc
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK-----TPICPICRTR 118 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~-----~~~CP~CR~~ 118 (143)
.|.+|...-. +..+..-..|...||..|+.+=+.. .=.||.|+.+
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4667775422 2344444468899999999854433 2249998753
No 116
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=86.08 E-value=0.55 Score=28.51 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=35.0
Q ss_pred CCccccccccccCCCeeeEcC-CCCCcccHHhHHHH------H----hCCCCCccccCccC
Q 032328 71 PVDCVVCLENFRMGDKCRLLP-NCRHSFHAQCIDSW------L----LKTPICPICRTRVS 120 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~w------l----~~~~~CP~CR~~i~ 120 (143)
...|.||...+.++...+... .|..=||..|+.-= + .....||.|+..-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 357999999987766666554 58889999997421 1 02355999987644
No 117
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.62 E-value=0.69 Score=27.38 Aligned_cols=45 Identities=29% Similarity=0.636 Sum_probs=28.1
Q ss_pred CCCccccccccccCCCeeeEcCC--CC-CcccHHhHHHHHhC----CCCCccccCcc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPN--CR-HSFHAQCIDSWLLK----TPICPICRTRV 119 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~wl~~----~~~CP~CR~~i 119 (143)
+...| ||-.... ++ ++.... |. .-||..|+. +.. +-.||.|+..-
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 45567 9988643 32 233234 54 579999997 333 33599997643
No 118
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=82.86 E-value=0.38 Score=26.00 Aligned_cols=43 Identities=33% Similarity=0.675 Sum_probs=27.3
Q ss_pred CCCccccccccccCCCeeeEcCC--CC-CcccHHhHHHHHhC----CCCCccccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPN--CR-HSFHAQCIDSWLLK----TPICPICRT 117 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~wl~~----~~~CP~CR~ 117 (143)
+...| +|-+... + ..+.... |. .-||..|+. +.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44567 8987642 3 3444445 65 699999997 433 234998864
No 119
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=82.58 E-value=0.37 Score=26.15 Aligned_cols=43 Identities=30% Similarity=0.659 Sum_probs=26.6
Q ss_pred CCCccccccccccCCCeeeEcCC--CC-CcccHHhHHHHHhC----CCCCccccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPN--CR-HSFHAQCIDSWLLK----TPICPICRT 117 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~wl~~----~~~CP~CR~ 117 (143)
+...| ||..... + .++.... |. .-||..|+. +.. +-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44567 8987632 3 3343334 44 689999997 443 234998864
No 120
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=82.10 E-value=1.4 Score=25.80 Aligned_cols=53 Identities=23% Similarity=0.440 Sum_probs=34.0
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh-------CCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL-------KTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~-------~~~~CP~CR~~i~~~ 122 (143)
+...|.+|...|..-..--....||++|+..|...... ....|-.|...+...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 45679999999875422222235999999999865321 123488886665543
No 121
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.95 E-value=0.21 Score=30.56 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=29.1
Q ss_pred ccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccCc
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRTR 118 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~ 118 (143)
.|.+|...-.+ +.+..-..|...||..|+.+=+... -.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57777766333 3344444689999999998644432 248888554
No 122
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=81.94 E-value=0.38 Score=33.41 Aligned_cols=45 Identities=31% Similarity=0.625 Sum_probs=26.0
Q ss_pred ccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC--C---CCCccccCc
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK--T---PICPICRTR 118 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~--~---~~CP~CR~~ 118 (143)
.|.+|...-. +..+.....|...||..|+.+=+.. . =.||.|+.+
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 5888876422 2334444468899999999864433 2 249999653
No 123
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=81.44 E-value=1.3 Score=24.82 Aligned_cols=33 Identities=15% Similarity=0.430 Sum_probs=23.0
Q ss_pred CccccccccccCCCeeeEcCCCCCcccHHhHHH
Q 032328 72 VDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDS 104 (143)
Q Consensus 72 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 104 (143)
..|.+|...|..-..--....||++|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999999875322122235999999999753
No 124
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.10 E-value=0.8 Score=26.12 Aligned_cols=49 Identities=22% Similarity=0.374 Sum_probs=30.8
Q ss_pred CCCccccccccccCCCeeeEcC-CCCCcccHHhHHHHH---------hCCCCCccccCcc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLP-NCRHSFHAQCIDSWL---------LKTPICPICRTRV 119 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~-~C~H~FH~~Ci~~wl---------~~~~~CP~CR~~i 119 (143)
....| ||-.....+..|.--. .|..=||..|+.-=- ..+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45678 7988754443333320 488899999985311 1245699997653
No 125
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=80.99 E-value=1.4 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.468 Sum_probs=27.7
Q ss_pred CCCCCccccccccccCCCeeeEcC--CCCCcccHHhHHHHHhC
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLP--NCRHSFHAQCIDSWLLK 108 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~wl~~ 108 (143)
.+.+..|.||-+. ..+.... .|...|+.+||..++..
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 4457789999975 3445544 58899999999998743
No 126
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.79 E-value=1.5 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=25.2
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHH
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSW 105 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~w 105 (143)
+...|.+|...|..-..--....||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456799999998753222222359999999997653
No 127
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=80.64 E-value=1.5 Score=25.22 Aligned_cols=35 Identities=23% Similarity=0.575 Sum_probs=24.6
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHH
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDS 104 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 104 (143)
+...|.+|...|..-..--....||.+|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 34579999999875322222235999999999865
No 128
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=80.23 E-value=0.098 Score=32.35 Aligned_cols=47 Identities=15% Similarity=0.488 Sum_probs=30.2
Q ss_pred ccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCC----CCCccccCccC
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKT----PICPICRTRVS 120 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~----~~CP~CR~~i~ 120 (143)
.|.+|...-.++ .+..-..|...||..|+.+=+... -.||.|+....
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 588887764333 344444689999999998644332 23888865443
No 129
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=79.99 E-value=1.2 Score=26.18 Aligned_cols=50 Identities=18% Similarity=0.488 Sum_probs=31.3
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhC------CCCCccccCccC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLK------TPICPICRTRVS 120 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~------~~~CP~CR~~i~ 120 (143)
...|.+|...|..-..--....||++|+..|....... ...|-.|-..+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 45799999998753222233359999999998664311 223666655443
No 130
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.61 E-value=1.3 Score=27.69 Aligned_cols=34 Identities=21% Similarity=0.510 Sum_probs=23.8
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHH
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDS 104 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 104 (143)
...|.+|...|..-..--....||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3579999999875322222235999999999754
No 131
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=79.37 E-value=0.44 Score=26.54 Aligned_cols=47 Identities=21% Similarity=0.471 Sum_probs=30.1
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh---CCCCCccccC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL---KTPICPICRT 117 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~---~~~~CP~CR~ 117 (143)
.+...| ||-..... +..+....|..=||..|+.---. ....||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~-~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAG-RPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTT-CCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCC-CCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 355678 99887653 33444445889999999853211 2345888864
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.00 E-value=3.3 Score=22.91 Aligned_cols=43 Identities=19% Similarity=0.520 Sum_probs=32.2
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
....|+.|-+.+..++.+.. -+..||.+|. .|..|+..+....
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 50 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSS---LGKDWHKFCL--------KCERCSKTLTPGG 50 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEE---TTEEEETTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcCCCCEeECCeEEEE---CCeEeeCCCC--------CCCCCCCccCCCc
Confidence 45689999999887666543 5778888774 4888988887553
No 133
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=78.62 E-value=0.24 Score=31.00 Aligned_cols=49 Identities=16% Similarity=0.397 Sum_probs=30.3
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCcc
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRV 119 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i 119 (143)
...|..|-..|..-..--....||.+|+..|..........|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4579999999865322122235999999999766554455677775443
No 134
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=78.30 E-value=2 Score=32.18 Aligned_cols=47 Identities=17% Similarity=0.484 Sum_probs=32.7
Q ss_pred CCCCCccccccccccCCCeeeEcC--CCCCcccHHhHHHHHhC----------CCCCccccCc
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLP--NCRHSFHAQCIDSWLLK----------TPICPICRTR 118 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~--~C~H~FH~~Ci~~wl~~----------~~~CP~CR~~ 118 (143)
...+..|.+|-+. + .+.... .|...||.+||..++-. .=.|=+|.-.
T Consensus 90 DG~~~yCr~C~~G---g-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 90 DGYQSYCSICCSG---E-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSBCSCTTTCCC---S-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCcccceEcCCC---C-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 4457789999875 3 344444 58899999999999832 2347777544
No 135
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=77.46 E-value=0.97 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.365 Sum_probs=18.4
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHh
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQC 101 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~C 101 (143)
.+.|+.|-......+.+.. -|..||+.|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNC---LDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCS---SSSCCCGGG
T ss_pred CCcCCccCCEEecceeEEE---CCeEecccC
Confidence 3568888877665544332 577888877
No 136
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=77.42 E-value=1.3 Score=30.37 Aligned_cols=34 Identities=24% Similarity=0.482 Sum_probs=24.0
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHH
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDS 104 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 104 (143)
+..|.+|...|..-..--....||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999864322222335999999999754
No 137
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=77.10 E-value=1.9 Score=32.15 Aligned_cols=47 Identities=21% Similarity=0.531 Sum_probs=29.3
Q ss_pred ccccccccccCCCeeeEcCCCCCc--ccHHhHHHHHhC--CCCCccccCccCCC
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHS--FHAQCIDSWLLK--TPICPICRTRVSPS 122 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~--FH~~Ci~~wl~~--~~~CP~CR~~i~~~ 122 (143)
.|++-...+.. .++-.. |.|. |-..=+-..... .-.||+|...+...
T Consensus 251 ~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 251 QCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp BCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred cCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 68988777655 344454 9996 654433333333 34599999887543
No 138
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.07 E-value=2 Score=24.78 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=23.4
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHH
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDS 104 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~ 104 (143)
+...|.+|...|..-..--....||.+|+..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34579999999864321112225999999999643
No 139
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.82 E-value=3.1 Score=22.72 Aligned_cols=42 Identities=19% Similarity=0.460 Sum_probs=29.3
Q ss_pred CCccccccccccC--CCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRM--GDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~--~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+.. ++.+... -+..||.+|. .|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF--EERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC--SSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcceEEE--CCcccCcccC--------EeccCCCcCCCC
Confidence 4679999998875 3333332 5788888775 588888888644
No 140
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.80 E-value=4 Score=22.20 Aligned_cols=40 Identities=23% Similarity=0.542 Sum_probs=24.7
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVS 120 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~ 120 (143)
...|+.|-+.+...+.+... -+..||.+|. .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC--------cccccCCcCC
Confidence 45688888777654333322 4667777664 4777777774
No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.72 E-value=1.4 Score=30.37 Aligned_cols=35 Identities=17% Similarity=0.465 Sum_probs=25.0
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHH
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSW 105 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~w 105 (143)
+..|.+|...|..-..--....||++||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999998754222233359999999997653
No 142
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.52 E-value=2.9 Score=22.80 Aligned_cols=42 Identities=19% Similarity=0.524 Sum_probs=29.2
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+..++.+... -+..||.+|. .|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY--GGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS--TTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEE--CccccCcccC--------eECCCCCcCCCC
Confidence 45799999988864443322 5778888774 488888887654
No 143
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=76.33 E-value=0.86 Score=24.85 Aligned_cols=43 Identities=33% Similarity=0.653 Sum_probs=26.9
Q ss_pred CCCccccccccccCCCeeeEcCC--CC-CcccHHhHHHHHhC----CCCCccccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPN--CR-HSFHAQCIDSWLLK----TPICPICRT 117 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~--C~-H~FH~~Ci~~wl~~----~~~CP~CR~ 117 (143)
+...| +|-+... + ..+.... |. .-||..|+. +.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 44567 8988632 3 3344334 44 799999997 332 334999865
No 144
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=76.14 E-value=2.2 Score=31.72 Aligned_cols=48 Identities=27% Similarity=0.519 Sum_probs=30.5
Q ss_pred ccccccccccCCCeeeEcCCCCCc--ccHHhHHHHHhC--CCCCccccCccCCCC
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHS--FHAQCIDSWLLK--TPICPICRTRVSPSK 123 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~--FH~~Ci~~wl~~--~~~CP~CR~~i~~~~ 123 (143)
.|++-...+.. .++-.. |.|. |-..=+-.+... .-.||+|...+...+
T Consensus 217 ~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 217 MCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp BCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 58888877655 344444 9995 655444443333 345999999886543
No 145
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.08 E-value=2.4 Score=23.47 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=30.6
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
.....|+-|-+.+...+.+... -+..||.+|. .|-.|+.++...
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCCC
Confidence 3457899999998765544332 4778888774 477888877654
No 146
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.06 E-value=3.8 Score=23.15 Aligned_cols=44 Identities=23% Similarity=0.529 Sum_probs=31.8
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
.....|+-|-..+...+.+.. -+..||.+|. .|-.|+..+....
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a---~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCV---NGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCB---TTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCCcccCCCcccceEEEE---CCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 345789999999876655542 4778998884 4778888777654
No 147
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=75.97 E-value=1.8 Score=23.47 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=32.1
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
....|+-|-..+..++.+... -+..||.+|. .|-.|...+...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 456899999998876665433 4778888886 488888887655
No 148
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=75.40 E-value=0.74 Score=27.96 Aligned_cols=27 Identities=19% Similarity=0.477 Sum_probs=17.7
Q ss_pred CCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 92 NCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 92 ~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
+||+.| .+. +.....||.|+.+-.+.+
T Consensus 72 ~CG~~F----~~~-~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 72 KCGFVF----KAE-INIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TTCCBC----CCC-SSCCSSCSSSCCCCBCCC
T ss_pred hCcCee----ccc-CCCCCCCcCCCCCccCCc
Confidence 599988 111 233466999998876653
No 149
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=74.34 E-value=2.2 Score=27.07 Aligned_cols=36 Identities=17% Similarity=0.518 Sum_probs=24.9
Q ss_pred CCCCcccccccccc-CCCeeeEcCCCCCcccHHhHHH
Q 032328 69 SSPVDCVVCLENFR-MGDKCRLLPNCRHSFHAQCIDS 104 (143)
Q Consensus 69 ~~~~~C~ICl~~~~-~~~~v~~l~~C~H~FH~~Ci~~ 104 (143)
.+...|++|...+. ....-.....|+|-+|..|-..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 35678999999983 2222244446999999988643
No 150
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=73.77 E-value=1.4 Score=26.41 Aligned_cols=12 Identities=25% Similarity=0.941 Sum_probs=10.6
Q ss_pred cccHHhHHHHHh
Q 032328 96 SFHAQCIDSWLL 107 (143)
Q Consensus 96 ~FH~~Ci~~wl~ 107 (143)
-||+.|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 151
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=73.73 E-value=1.4 Score=26.35 Aligned_cols=12 Identities=33% Similarity=1.149 Sum_probs=10.7
Q ss_pred cccHHhHHHHHh
Q 032328 96 SFHAQCIDSWLL 107 (143)
Q Consensus 96 ~FH~~Ci~~wl~ 107 (143)
-||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 152
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.61 E-value=3.5 Score=22.43 Aligned_cols=42 Identities=21% Similarity=0.522 Sum_probs=28.7
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+.|-+.+...+.+... -+..||.+|. .|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCCC
Confidence 35789999888875443332 4678887774 477888877654
No 153
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.61 E-value=1.6 Score=24.41 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHH----hCCCCCccccCc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWL----LKTPICPICRTR 118 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl----~~~~~CP~CR~~ 118 (143)
....| ||-....+++..+....|..=||..|+.--- .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 44568 7988876665445544688899999985421 123459999754
No 154
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=70.75 E-value=0.26 Score=26.62 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=11.7
Q ss_pred CCCCCccccccc-cccCC
Q 032328 68 GSSPVDCVVCLE-NFRMG 84 (143)
Q Consensus 68 ~~~~~~C~ICl~-~~~~~ 84 (143)
..+...|.||+. .|.++
T Consensus 6 ~~d~~~C~iC~KTKFADG 23 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADG 23 (62)
T ss_dssp SSCCCCCSSSSCSCCCSS
T ss_pred cCCcchhhhhccceeccC
Confidence 346778999994 45554
No 155
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=70.50 E-value=0.88 Score=34.19 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh-------CCCCCccccCccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL-------KTPICPICRTRVS 120 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~-------~~~~CP~CR~~i~ 120 (143)
....|.+|-..|..-..-.....||++||..|...... ....|-.|-..+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 34679999998864322122225999999999976541 1234777765543
No 156
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=69.52 E-value=4.4 Score=22.84 Aligned_cols=40 Identities=23% Similarity=0.641 Sum_probs=30.0
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVS 120 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~ 120 (143)
....|+-|-+.+..++.+.. -+..||.+|. .|..|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 45679999999887665544 4678888774 5888988876
No 157
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.81 E-value=6 Score=21.82 Aligned_cols=42 Identities=21% Similarity=0.524 Sum_probs=28.9
Q ss_pred CCccccccccccC--CCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRM--GDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~--~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+.|-+.+.. +..+... -+..||.+|. .|..|+..+...
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~~ 48 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLVGK 48 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCSSS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCCCC
Confidence 4579999998875 3333332 5778898885 488888887643
No 158
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.56 E-value=3.3 Score=23.84 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=30.2
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
.....|+-|-+.+. ++.+.. -+..||.+|. .|-.|+..+....
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVA---LGKSWHPEEF--------NCAHCKNTMAYIG 65 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEE---TTEEECTTTC--------BCSSSCCBCSSSC
T ss_pred CCCCCCccCCCEec-ceEEEE---CCccccccCC--------ccCCCCCCCCCCE
Confidence 34578999999885 333332 5788888775 5888988887543
No 159
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=68.42 E-value=8.5 Score=21.92 Aligned_cols=43 Identities=14% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSK 123 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~ 123 (143)
.....|+-|-+.+.. +.+. - -+..||.+|. .|-.|+..+....
T Consensus 23 ~~~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVVK--A-RDKYRHPECF--------VCADCNLNLKQKG 65 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCEE--S-SSCEECTTTC--------CCSSSCCCTTTSC
T ss_pred CcCCCcccCCCEecc-cEEE--E-CCceECccCC--------EecCCCCCCCCCC
Confidence 345689999998875 2222 2 6788998874 4888888887543
No 160
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=66.90 E-value=1.6 Score=24.61 Aligned_cols=41 Identities=22% Similarity=0.580 Sum_probs=27.9
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+.|-+.+.+++.+.. -+..||.+|. .|-.|+.++...
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSSE--------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeEEe---CCcccccccC--------ccCCCCCCCCCC
Confidence 4678899888876665433 4677887764 377787777654
No 161
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.89 E-value=1.1 Score=24.27 Aligned_cols=37 Identities=22% Similarity=0.628 Sum_probs=24.9
Q ss_pred CccccccccccCCCeeeEcC--C--CCCcccHHhHHHHHhC
Q 032328 72 VDCVVCLENFRMGDKCRLLP--N--CRHSFHAQCIDSWLLK 108 (143)
Q Consensus 72 ~~C~ICl~~~~~~~~v~~l~--~--C~H~FH~~Ci~~wl~~ 108 (143)
..|+-|...++..+....+. . |++.|+..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46888887776655433333 2 7788888888887644
No 162
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.84 E-value=9.2 Score=21.30 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
....|+-|-+.+.. ..+. .-+..||.+| ..|..|+.++...
T Consensus 14 ~~~~C~~C~~~I~~-~~v~---a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDE-QPLI---FKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCS-CCCC---CSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCCccCCCEecc-eEEE---ECcceeCCCC--------CEeCCCCCccCCC
Confidence 45679999998873 3222 2577888777 4588888888755
No 163
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=64.77 E-value=1.8 Score=25.49 Aligned_cols=44 Identities=25% Similarity=0.444 Sum_probs=27.0
Q ss_pred CCCCccccccccccCCCeeeEcCCCC---CcccHHhHHHHHhC----CCCCcc-ccC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCR---HSFHAQCIDSWLLK----TPICPI-CRT 117 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~---H~FH~~Ci~~wl~~----~~~CP~-CR~ 117 (143)
.+...| ||-.... ++ ++....|. .-||..|+. |.. .-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345678 8987533 33 33333444 689999995 332 345999 974
No 164
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=64.24 E-value=2.3 Score=20.27 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=6.3
Q ss_pred CCccccCccCC
Q 032328 111 ICPICRTRVSP 121 (143)
Q Consensus 111 ~CP~CR~~i~~ 121 (143)
.||+|...+..
T Consensus 7 iCP~C~~~l~s 17 (34)
T 3mjh_B 7 ICPQCMKSLGS 17 (34)
T ss_dssp ECTTTCCEESS
T ss_pred CCcHHHHHcCC
Confidence 36666655543
No 165
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=64.17 E-value=5.8 Score=24.23 Aligned_cols=51 Identities=10% Similarity=-0.005 Sum_probs=36.0
Q ss_pred CccccccccccC-CCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCc
Q 032328 72 VDCVVCLENFRM-GDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKV 124 (143)
Q Consensus 72 ~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~ 124 (143)
..|..|-..+.+ +...... =|..||..|..+-+..+..|..|...|....+
T Consensus 33 F~C~~C~~~L~~~~~~~~~~--~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTK--SGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEE--TTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEEEE--CCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 468888888753 2222222 57789999998877665589999999986544
No 166
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=64.03 E-value=3.3 Score=26.85 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=29.1
Q ss_pred CCCcccccccccc--CCCeeeEcCCCCCcccHHhHHHHHhCCCC--CccccC
Q 032328 70 SPVDCVVCLENFR--MGDKCRLLPNCRHSFHAQCIDSWLLKTPI--CPICRT 117 (143)
Q Consensus 70 ~~~~C~ICl~~~~--~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~--CP~CR~ 117 (143)
++..|++|...|. .+.. .....|+|.+|..|- .|...... |-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g-~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSR-RQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCC-EECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCC-CcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 5678999999864 2232 333459999999997 23332222 666654
No 167
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=63.94 E-value=4.8 Score=22.22 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=20.9
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccH-HhHHHHHhCCCCCcccc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHA-QCIDSWLLKTPICPICR 116 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~-~Ci~~wl~~~~~CP~CR 116 (143)
+-..|..|-..+..+.- ... =|..|+. .|..+- ....|..|.
T Consensus 26 ~CF~C~~C~~~L~~~~~-~~~--~g~~yC~~~cy~~~--f~~~C~~C~ 68 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGH-AEH--EGKPYCNHPCYSAM--FGPKGFGRG 68 (76)
T ss_dssp TTCBCTTTCCBCCTTTE-EEE--TTEEEETTTHHHHH--SSCCCSSCC
T ss_pred CCCCccccCccCCCCce-ECc--CCeEeeCHHHHHHH--hCccCCCcC
Confidence 34456666666655422 221 3556666 466542 233466664
No 168
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=63.82 E-value=4.1 Score=23.54 Aligned_cols=32 Identities=3% Similarity=0.018 Sum_probs=21.8
Q ss_pred eEcCCCCCcccHHhHHHHHhCCCCCccccCccCCCCcceeecC
Q 032328 88 RLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPSKVGVILKD 130 (143)
Q Consensus 88 ~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~~~~~~~~~ 130 (143)
...+ |..+||+.|. ..|.+| +..+.+|..++.
T Consensus 18 P~T~-C~~CyCKkCc-------~HCq~C---F~~KGLGIsYgR 49 (86)
T 1tac_A 18 PKTA-SNRAHAKKSA-------YHSQVA---FITKGLGISYGR 49 (86)
T ss_dssp TTTC-SSCSSTTTTT-------TTCCCS---CSSTTSSSSSCC
T ss_pred CCCC-CCCceecchh-------hhhhHH---HccCCCceEecc
Confidence 3445 9999998886 458888 666666655543
No 169
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=63.77 E-value=2.2 Score=25.46 Aligned_cols=44 Identities=14% Similarity=0.350 Sum_probs=26.3
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
.+..|+.|..++........ +..|-.. +.....||-|..++..-
T Consensus 31 M~~~CP~Cq~eL~~~g~~~h--------C~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHAR--------CRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEE--------ETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred ccccCccCCCcceecCCEEE--------Cccccch-hhccccCcchhhHHHHH
Confidence 34789999998764322222 2333322 34456699998888643
No 170
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=63.12 E-value=8.3 Score=21.16 Aligned_cols=42 Identities=19% Similarity=0.460 Sum_probs=29.5
Q ss_pred CCccccccccccC---CCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRM---GDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~---~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+.. ...+... -+..||.+|. .|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCCCC
Confidence 4679999999885 3333332 4778888774 588898888754
No 171
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=63.11 E-value=1 Score=25.84 Aligned_cols=20 Identities=20% Similarity=0.649 Sum_probs=15.9
Q ss_pred CCCCcccHHhHHHHHhCCCCCc
Q 032328 92 NCRHSFHAQCIDSWLLKTPICP 113 (143)
Q Consensus 92 ~C~H~FH~~Ci~~wl~~~~~CP 113 (143)
.|+|.|+..|-..|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5999999999998855 4553
No 172
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.80 E-value=11 Score=21.57 Aligned_cols=41 Identities=22% Similarity=0.544 Sum_probs=27.0
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+...+.+. . -+..||.+|. .|-.|...+...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCCC--------eeCCCCCCCCCC
Confidence 457888888887655442 2 5677887774 366676666554
No 173
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=62.66 E-value=8.7 Score=21.43 Aligned_cols=52 Identities=25% Similarity=0.464 Sum_probs=33.2
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh-----CCCCCccccCccCCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL-----KTPICPICRTRVSPS 122 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~-----~~~~CP~CR~~i~~~ 122 (143)
....| ||-..+..+...+....|.-=||..|+.---. ....||.|+..-...
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~~ 65 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKS 65 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCCC
T ss_pred CeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCCC
Confidence 34445 88887764445555446889999999953211 235699998664433
No 174
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=61.48 E-value=2.1 Score=19.46 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=8.8
Q ss_pred CCCCccccCccCC
Q 032328 109 TPICPICRTRVSP 121 (143)
Q Consensus 109 ~~~CP~CR~~i~~ 121 (143)
+..||+|+.....
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3468999876554
No 175
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=61.47 E-value=0.73 Score=25.53 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=26.6
Q ss_pred CccccccccccCCCeeeEc-CCCCCcccHHhHHHHH---h-----CCCCCccccC
Q 032328 72 VDCVVCLENFRMGDKCRLL-PNCRHSFHAQCIDSWL---L-----KTPICPICRT 117 (143)
Q Consensus 72 ~~C~ICl~~~~~~~~v~~l-~~C~H~FH~~Ci~~wl---~-----~~~~CP~CR~ 117 (143)
..| ||-.....+..|.-- +.|..=||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 457 797665555443322 1377789999983200 0 1355999974
No 176
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=60.55 E-value=9.5 Score=23.45 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=29.4
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVS 120 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~ 120 (143)
...|+-|-..+.....+.. -+..||.+| ..|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 4689999999886543433 578899888 45889998886
No 177
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.68 E-value=7.9 Score=21.50 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSP 121 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~ 121 (143)
....|+-|-+.+... .+ .- -+..||.+|. .|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~-~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV-FV--KL-RDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCSS-CE--EC-SSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCCccccCCCCccCc-EE--EE-CcceeCcCcC--------eeCCCCCCCCC
Confidence 456899999998763 22 22 5788998885 48888887753
No 178
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.67 E-value=7.4 Score=21.43 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=25.1
Q ss_pred CCCCCccccccccccCCCeeeEcCCC-CCcccHHhHHHHH
Q 032328 68 GSSPVDCVVCLENFRMGDKCRLLPNC-RHSFHAQCIDSWL 106 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~~~~v~~l~~C-~H~FH~~Ci~~wl 106 (143)
+.+..-|.||.++ ..++-+. | +-+||..|....-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHHc
Confidence 3456679999998 3346665 8 6799999988754
No 179
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=59.35 E-value=9.1 Score=24.77 Aligned_cols=9 Identities=0% Similarity=0.050 Sum_probs=3.7
Q ss_pred CCcccHHhH
Q 032328 94 RHSFHAQCI 102 (143)
Q Consensus 94 ~H~FH~~Ci 102 (143)
|..||..|.
T Consensus 52 g~~yC~~~y 60 (169)
T 2rgt_A 52 ESVYCKDDF 60 (169)
T ss_dssp SCEECHHHH
T ss_pred Ceeeecccc
Confidence 334444443
No 180
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.04 E-value=5.3 Score=21.58 Aligned_cols=40 Identities=20% Similarity=0.484 Sum_probs=27.1
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+.. +.+.. -+..||.+|. .|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 4578888888764 33322 4677887774 578888877765
No 181
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=58.43 E-value=11 Score=19.94 Aligned_cols=40 Identities=15% Similarity=0.375 Sum_probs=28.1
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+. ++. +.. -+..||.+|. .|..|+.++...
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~~ 44 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEHF--------VCAKCEKPFLGH 44 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTTC--------BCTTTCCBCSSS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCcC--------EECCCCCCCCCC
Confidence 457999999887 332 222 5778888774 488888888754
No 182
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.15 E-value=17 Score=19.34 Aligned_cols=40 Identities=25% Similarity=0.688 Sum_probs=26.3
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+..+ .+. . -+..||.+|. .|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~-~~~--a-~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-GVT--Y-REQPWHKECF--------VCTACRKQLSGQ 44 (70)
T ss_dssp CCBCSSSCCBCCSS-EEE--S-SSSEEETTTS--------BCSSSCCBCTTS
T ss_pred CCCCcccCCeeccc-eEE--E-CccccCCCCC--------ccCCCCCcCCcC
Confidence 45688888887643 222 2 5678887774 477888877543
No 183
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.86 E-value=11 Score=21.03 Aligned_cols=42 Identities=17% Similarity=0.441 Sum_probs=28.5
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+.|-..+..++.+... -+..||.+|. .|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF--------RCCRCQRSLADE 56 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS--------BCTTTCCBCSSC
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC--------eecCCCCccCCC
Confidence 45799999988843333221 4778888774 488888888754
No 184
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=57.23 E-value=8.9 Score=23.49 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCCccccccccccC-CCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCC
Q 032328 70 SPVDCVVCLENFRM-GDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSP 121 (143)
Q Consensus 70 ~~~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~ 121 (143)
+-..|..|-..+.+ +...... =|..|+..|..+-+.....|+.|...|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccCc
Confidence 44567777777653 2233332 46677777776654443367777777764
No 185
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=57.18 E-value=1.2 Score=25.81 Aligned_cols=18 Identities=28% Similarity=0.934 Sum_probs=14.5
Q ss_pred eEcCCCCCcccHHhHHHH
Q 032328 88 RLLPNCRHSFHAQCIDSW 105 (143)
Q Consensus 88 ~~l~~C~H~FH~~Ci~~w 105 (143)
+..|.|++.|+..|-.+|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 445569999999998888
No 186
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=57.13 E-value=1.5 Score=22.74 Aligned_cols=41 Identities=22% Similarity=0.513 Sum_probs=24.8
Q ss_pred cccccccCCCeeeEcCCCCCcccHHhHHHHH---hCCCCCccccC
Q 032328 76 VCLENFRMGDKCRLLPNCRHSFHAQCIDSWL---LKTPICPICRT 117 (143)
Q Consensus 76 ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl---~~~~~CP~CR~ 117 (143)
||-.... +...+.-..|+.=||..|+.--- .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5766554 33333334588899999985321 12345888865
No 187
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=55.50 E-value=7.7 Score=25.64 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=22.8
Q ss_pred CccccccccccC-CCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCC
Q 032328 72 VDCVVCLENFRM-GDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSP 121 (143)
Q Consensus 72 ~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~ 121 (143)
..|..|-..+.. +...... =|..||..|..+-+..+..|+.|...|..
T Consensus 33 F~C~~C~~~L~~~g~~~~~~--~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTK--SGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEE--TTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred cccCCCCcccccCCceEEEe--CCccccccccccccccCCccccCCCcccc
Confidence 345555555443 2222222 34556666655543322246666665553
No 188
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=54.78 E-value=8.8 Score=20.40 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=28.0
Q ss_pred CccccccccccCCCeeeEcCCCCCccc--HHhHHHHHhCCCCCccccCccCCC
Q 032328 72 VDCVVCLENFRMGDKCRLLPNCRHSFH--AQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 72 ~~C~ICl~~~~~~~~v~~l~~C~H~FH--~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
..|+-|-+.+..++..... -+..|| .+| ..|-.|+.++...
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCCCC
Confidence 4688898888864333322 577888 877 4588888888644
No 189
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=54.40 E-value=3.2 Score=23.12 Aligned_cols=17 Identities=35% Similarity=0.710 Sum_probs=9.4
Q ss_pred HHhCCCCCccccCccCC
Q 032328 105 WLLKTPICPICRTRVSP 121 (143)
Q Consensus 105 wl~~~~~CP~CR~~i~~ 121 (143)
|+...-.||.|+.++..
T Consensus 4 ~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 4 KLLDILACPICKGPLKL 20 (69)
T ss_dssp CGGGTCCCTTTCCCCEE
T ss_pred HHHhheeCCCCCCcCeE
Confidence 34444456766666553
No 190
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=53.09 E-value=14 Score=16.12 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032328 7 ISLTLLFVGIAALVVIHV 24 (143)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (143)
..++++.+.++...++++
T Consensus 6 A~~lLIviav~aaVllyl 23 (26)
T 3j1r_A 6 ATLLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544444
No 191
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=52.54 E-value=2.6 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.259 Sum_probs=13.3
Q ss_pred HHHhCCCCCccccCccCCC
Q 032328 104 SWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 104 ~wl~~~~~CP~CR~~i~~~ 122 (143)
+|+...-.||+|+.++...
T Consensus 5 ~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEE
T ss_pred HHHHHHhCCCCCCCcCeEe
Confidence 4555666799998877644
No 192
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.75 E-value=13 Score=20.27 Aligned_cols=37 Identities=16% Similarity=0.446 Sum_probs=22.3
Q ss_pred CccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccC
Q 032328 72 VDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVS 120 (143)
Q Consensus 72 ~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~ 120 (143)
..|+-|-..+.. +.+ ..-+..||.+|. .|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~-~~v---~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL---EAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB---CCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE---EeCCCCCCCCcC--------EeCCCCCCCC
Confidence 467777777665 221 225667777663 4666766665
No 193
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.49 E-value=12 Score=19.96 Aligned_cols=40 Identities=20% Similarity=0.595 Sum_probs=25.7
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+.. +.+.. -+..||.+|. .|..|+.++...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADCF--------VCVTCSKKLAGQ 44 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTTT--------BCTTTCCBCTTS
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCcC--------EECCCCCCCCCC
Confidence 4568888888764 33322 4667777764 477788777643
No 194
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=51.20 E-value=9.2 Score=21.99 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=9.1
Q ss_pred CCccccCccCCCCccee
Q 032328 111 ICPICRTRVSPSKVGVI 127 (143)
Q Consensus 111 ~CP~CR~~i~~~~~~~~ 127 (143)
-|+.|..-++...+.+.
T Consensus 53 FC~~C~~LiSkkrv~f~ 69 (81)
T 2jrp_A 53 FCQNGHGLISKKRVNFV 69 (81)
T ss_dssp CCTTTTCCCCTTSSEEE
T ss_pred eeccCCCEeecceEEEE
Confidence 36666555555554443
No 195
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=49.72 E-value=11 Score=24.76 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=32.4
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
..-..|..|-..+.... . .. =|..||..|..+ .....|..|...|...
T Consensus 85 ~~CF~C~~C~~~L~~~~-f-~~--~g~~yC~~~y~~--~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERC-F-SR--GESVYCKDDFFK--RFGTKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCC-E-EE--TTEEECHHHHHH--TTSCCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCc-e-eE--CCEeeecCcccc--ccccccccCCCccCCC
Confidence 35567888888877643 2 22 477888888765 2345688888888754
No 196
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.54 E-value=11 Score=20.86 Aligned_cols=42 Identities=19% Similarity=0.530 Sum_probs=30.5
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+.|-+.+..++.+... -+..||.+|. .|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC--------chhhCCCccCCC
Confidence 46899999998866554332 5778888775 488888887755
No 197
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=47.89 E-value=26 Score=18.86 Aligned_cols=37 Identities=19% Similarity=0.503 Sum_probs=30.4
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccH-HhHHHHH
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHA-QCIDSWL 106 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~-~Ci~~wl 106 (143)
....|+-|-..+..++........-|.||. .||...-
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 456899999999999888887767899987 4988753
No 198
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=47.45 E-value=13 Score=24.37 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=15.6
Q ss_pred eeEcCCCCCcccHHhHHHHHhCCCCCccccCc
Q 032328 87 CRLLPNCRHSFHAQCIDSWLLKTPICPICRTR 118 (143)
Q Consensus 87 v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~ 118 (143)
..+.+.|||++-. .....||+|..+
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3445569988741 223479999654
No 199
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=47.18 E-value=7.2 Score=20.65 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=9.5
Q ss_pred CCCccccccccccC
Q 032328 70 SPVDCVVCLENFRM 83 (143)
Q Consensus 70 ~~~~C~ICl~~~~~ 83 (143)
+--.|+.|...+..
T Consensus 9 ~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 9 EILACPACHAPLEE 22 (56)
T ss_dssp TSCCCSSSCSCEEE
T ss_pred hheeCCCCCCccee
Confidence 34478888887554
No 200
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=46.36 E-value=1.4 Score=32.01 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCCccccccccccCCCeeeE-cCCCC--CcccHHhHHHHHhCCCCCccccCc
Q 032328 70 SPVDCVVCLENFRMGDKCRL-LPNCR--HSFHAQCIDSWLLKTPICPICRTR 118 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~-l~~C~--H~FH~~Ci~~wl~~~~~CP~CR~~ 118 (143)
....|++|-..-... .+.. -..=| +.+|.-|-..|-..+..||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s-~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAG-MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEE-EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCcee-EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 467899998774322 1110 00022 566667888998888899999776
No 201
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.89 E-value=22 Score=19.53 Aligned_cols=40 Identities=20% Similarity=0.609 Sum_probs=26.8
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+..+ . +.. -+..||.+|. .|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~-~--v~a-~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 2cuq_A 15 APRCARCSKTLTQG-G--VTY-RDQPWHRECL--------VCTGCQTPLAGQ 54 (80)
T ss_dssp SCCCTTTCCCCCSC-C--EES-SSSEECTTTC--------BCSSSCCBCTTC
T ss_pred CCcCCCCCCEecCc-E--EEE-CCchhhhhhC--------CcccCCCcCCCC
Confidence 35788888887653 2 222 5778887774 478888887543
No 202
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=45.47 E-value=24 Score=16.39 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=12.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Q 032328 1 MVMEILISLTLLFVGIAALVVIH 23 (143)
Q Consensus 1 ~~~~il~~~~~~~~~~~~~~~~~ 23 (143)
|++.+...++.+.+.+++.+.++
T Consensus 1 mi~a~i~yi~~l~~~f~iA~GL~ 23 (32)
T 1vf5_E 1 MILGAVFYIVFIALFFGIAVGII 23 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH
Confidence 55666555555555555544443
No 203
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=44.67 E-value=45 Score=20.04 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=29.7
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCC
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSP 121 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~ 121 (143)
+-..|..|-..+... ..... =|..||..|..+- ....|+.|...|..
T Consensus 29 ~CF~C~~C~~~L~~~-~f~~~--~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGE-IYVMV--NDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTS-EEEEE--TTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcC-EEEeE--CCEEechHHhCcC--cCccCcccCCcCCc
Confidence 345677777776542 32222 4677877777663 34568888888875
No 204
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=43.65 E-value=44 Score=20.11 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=19.8
Q ss_pred CCCCcccHHhHH------HHHhC-----CCCCccccCccCCC
Q 032328 92 NCRHSFHAQCID------SWLLK-----TPICPICRTRVSPS 122 (143)
Q Consensus 92 ~C~H~FH~~Ci~------~wl~~-----~~~CP~CR~~i~~~ 122 (143)
.|+.=||..|.. +-+.. ...||.|...-...
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~~~ 48 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHVDG 48 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSCCC
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccccccCC
Confidence 489999999951 22222 36699997654433
No 205
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=42.81 E-value=15 Score=21.25 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=18.3
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhH
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCI 102 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci 102 (143)
...|+.|-+.+..++.++.. =+..||.+|.
T Consensus 66 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF 95 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF 95 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEES--SSCEEETTTC
T ss_pred CCccccCCCccccCCeEEEe--CCcchHHhCC
Confidence 45677777777655443332 4667776653
No 206
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=42.67 E-value=32 Score=17.04 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 032328 15 GIAALVVIHVC 25 (143)
Q Consensus 15 ~~~~~~~~~~~ 25 (143)
|+.+++.+.++
T Consensus 24 Gl~lLliwk~~ 34 (43)
T 2k9j_B 24 GLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 207
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.61 E-value=12 Score=20.72 Aligned_cols=40 Identities=20% Similarity=0.644 Sum_probs=27.1
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+.. +.+.. -+..||.+|. .|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 15 GTRCFSCDQFIEG-EVVSA---LGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CCcCccccCEecc-ceEEE---CCceeCccCC--------ccccCCCCCCCC
Confidence 3579999998873 33332 5678887775 377787777644
No 208
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=41.85 E-value=1.1 Score=19.22 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=8.3
Q ss_pred cccHHhHHHHHh
Q 032328 96 SFHAQCIDSWLL 107 (143)
Q Consensus 96 ~FH~~Ci~~wl~ 107 (143)
.||..|-.+|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 467777777764
No 209
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=41.11 E-value=2.8 Score=23.27 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=11.7
Q ss_pred HHhCCCCCccccCccCCC
Q 032328 105 WLLKTPICPICRTRVSPS 122 (143)
Q Consensus 105 wl~~~~~CP~CR~~i~~~ 122 (143)
|+..--.||.|+.++...
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp SSSCCCBCSSSCCBCEEE
T ss_pred HHhhheECCCCCCcCeEe
Confidence 344445688888877643
No 210
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=40.82 E-value=16 Score=23.04 Aligned_cols=26 Identities=19% Similarity=0.526 Sum_probs=18.7
Q ss_pred CCCccccccccccC-CCeeeEcCCCCC
Q 032328 70 SPVDCVVCLENFRM-GDKCRLLPNCRH 95 (143)
Q Consensus 70 ~~~~C~ICl~~~~~-~~~v~~l~~C~H 95 (143)
.-+.||-|-.+|.- .....+.|.|+|
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~h 52 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAH 52 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTE
T ss_pred cCCCCCCCCCcceEecCCeEECCcccc
Confidence 45789999999853 234566677888
No 211
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=40.42 E-value=26 Score=20.91 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=23.2
Q ss_pred CCCccccccccccC-CCeeeEcCCCCCcccHHhHHHHHhCC
Q 032328 70 SPVDCVVCLENFRM-GDKCRLLPNCRHSFHAQCIDSWLLKT 109 (143)
Q Consensus 70 ~~~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~Ci~~wl~~~ 109 (143)
.-..|..|-..+.+ +...... =|..|+..|..+-+..+
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~--~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCB--TTBCCCHHHHHHHHTSC
T ss_pred hcCcccccCCchhcCCCeeEEE--CCeeechHHHHHHhCcc
Confidence 44577888777764 2222222 46788888887755544
No 212
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=40.03 E-value=20 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.424 Sum_probs=25.4
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+.|-..+..++.+.. -+..||.+| ..|-.|+..+...
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~~ 155 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSC--------FRCAKCGKSLEST 155 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTT--------CBCTTTCCBCCSS
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhc--------CCccccCCCCCCC
Confidence 4468888887766555443 356677665 3466676666543
No 213
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=39.77 E-value=43 Score=20.85 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 032328 2 VMEILISLTLLFVGIAALVVIHVCV 26 (143)
Q Consensus 2 ~~~il~~~~~~~~~~~~~~~~~~~~ 26 (143)
++|+++++.++.+..++.+-.+.-+
T Consensus 3 LiEllivi~Ii~il~~ia~p~~~~~ 27 (144)
T 1oqw_A 3 LIELMIVVAIIGILAAIAIPQYQNY 27 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777766666666555444333
No 214
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.22 E-value=21 Score=19.72 Aligned_cols=40 Identities=18% Similarity=0.486 Sum_probs=26.9
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-..+.+ ..+.. -+..||.+|. .|..|+..+...
T Consensus 15 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD-RILRA---MGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS-CCEEE---TTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeecc-eeEEE---CCccccHHhc--------CcccCCCccCCC
Confidence 4678888888774 32222 4677887764 488888887643
No 215
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=36.89 E-value=14 Score=22.51 Aligned_cols=36 Identities=25% Similarity=0.513 Sum_probs=24.9
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL 107 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~ 107 (143)
.-..|..|-..+..++..... =+..||..|..+.+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHhc
Confidence 445678888887655554443 477888888888764
No 216
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.58 E-value=24 Score=19.32 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=27.0
Q ss_pred CCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCccccCccCCC
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~i~~~ 122 (143)
...|+-|-+.+.+ +.+.. -+..||.+|. .|..|+.++...
T Consensus 15 ~~~C~~C~~~I~~-~~v~a---~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLSA---MDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS-SCEEE---TTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CCccccCCCeecc-eeEEE---CCCeEecCcC--------ChhhCCCCCCCC
Confidence 3578888888775 33322 4667777764 488888887654
No 217
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=36.52 E-value=51 Score=20.77 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032328 2 VMEILISLTLLFVGIAALVVIHVCVV 27 (143)
Q Consensus 2 ~~~il~~~~~~~~~~~~~~~~~~~~~ 27 (143)
++|+++++.++.+..++.+-.+.-+.
T Consensus 3 LiEllvviaIigiLaaia~p~~~~~~ 28 (151)
T 3sok_A 3 LIELMIVVAIIGILAAFAIPAYNDYI 28 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777776666666555554443
No 218
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=36.43 E-value=28 Score=26.91 Aligned_cols=51 Identities=24% Similarity=0.479 Sum_probs=33.3
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHh-----CCCCCccccCccC
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL-----KTPICPICRTRVS 120 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~-----~~~~CP~CR~~i~ 120 (143)
.....| +|-..+..+...+....|.-=||..|+.---. ....||.|+..-.
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 344557 99988764455555556899999999843211 1245999986543
No 219
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=36.28 E-value=3.1 Score=23.25 Aligned_cols=17 Identities=35% Similarity=0.923 Sum_probs=10.4
Q ss_pred HhCCCCCccccCccCCC
Q 032328 106 LLKTPICPICRTRVSPS 122 (143)
Q Consensus 106 l~~~~~CP~CR~~i~~~ 122 (143)
+..--.||.|+.++...
T Consensus 5 LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 5 LLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCBCTTTCCBEEEE
T ss_pred HhhheECCCCCCcCEEe
Confidence 33445688888776543
No 220
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=36.23 E-value=29 Score=20.97 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=18.9
Q ss_pred CCccccccccccCCCeeeEcCCCCCccc
Q 032328 71 PVDCVVCLENFRMGDKCRLLPNCRHSFH 98 (143)
Q Consensus 71 ~~~C~ICl~~~~~~~~v~~l~~C~H~FH 98 (143)
...|..|... ++...-|. |||+++
T Consensus 24 ~~~C~~C~~~---~~~W~CL~-CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLS-CYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETT-TCCEEE
T ss_pred CCcCccccCC---CCeeeeee-cCcccc
Confidence 4579999987 56677777 999986
No 221
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=36.00 E-value=2.8 Score=23.27 Aligned_cols=14 Identities=21% Similarity=0.757 Sum_probs=9.6
Q ss_pred CCCCccccCccCCC
Q 032328 109 TPICPICRTRVSPS 122 (143)
Q Consensus 109 ~~~CP~CR~~i~~~ 122 (143)
--.||.|+.++...
T Consensus 8 iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 8 ILVCPLCKGPLVFD 21 (68)
T ss_dssp ECBCTTTCCBCEEE
T ss_pred heECCCCCCcCeEe
Confidence 34688888877643
No 222
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=35.83 E-value=15 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=14.7
Q ss_pred eEcCCCCCcccHHhHHHHHhCCCCCccccCc
Q 032328 88 RLLPNCRHSFHAQCIDSWLLKTPICPICRTR 118 (143)
Q Consensus 88 ~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~ 118 (143)
.+.+.|||++-.. .....||.|..+
T Consensus 156 ~~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 156 WRCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EEETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EEECCCCCEeeCC------CCCCCCCCCcCC
Confidence 3344588886421 122379999764
No 223
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=34.91 E-value=25 Score=23.66 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=15.3
Q ss_pred eeEcCCCCCcccHHhHHHHHhCCCCCccccCc
Q 032328 87 CRLLPNCRHSFHAQCIDSWLLKTPICPICRTR 118 (143)
Q Consensus 87 v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR~~ 118 (143)
..+.+.|||++-. ..-..||.|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 3444569998542 222479999754
No 224
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.44 E-value=11 Score=22.56 Aligned_cols=12 Identities=25% Similarity=0.883 Sum_probs=8.7
Q ss_pred CCCccccCccCC
Q 032328 110 PICPICRTRVSP 121 (143)
Q Consensus 110 ~~CP~CR~~i~~ 121 (143)
..||+|-.++..
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 458888777764
No 225
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=32.34 E-value=57 Score=20.41 Aligned_cols=11 Identities=27% Similarity=0.452 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 032328 12 LFVGIAALVVI 22 (143)
Q Consensus 12 ~~~~~~~~~~~ 22 (143)
.++++.++.++
T Consensus 61 gffgff~~GIm 71 (138)
T 2k21_A 61 GFFGFFTLGIM 71 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 226
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=30.65 E-value=34 Score=21.60 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032328 2 VMEILISLTLLFVGIAALVVIHV 24 (143)
Q Consensus 2 ~~~il~~~~~~~~~~~~~~~~~~ 24 (143)
++|+++++.++.+..++.+-.+.
T Consensus 3 LiEl~vvi~ii~il~~~~~p~~~ 25 (158)
T 2hi2_A 3 LIELMIVIAIVGILAAVALPAYQ 25 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777666666555444443
No 227
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.08 E-value=17 Score=15.93 Aligned_cols=13 Identities=23% Similarity=0.851 Sum_probs=8.6
Q ss_pred CCCccccCccCCC
Q 032328 110 PICPICRTRVSPS 122 (143)
Q Consensus 110 ~~CP~CR~~i~~~ 122 (143)
..||+|.......
T Consensus 7 vqcpvcqq~mpaa 19 (29)
T 3vhs_A 7 VQCPVCQQMMPAA 19 (29)
T ss_dssp EECTTTCCEEEGG
T ss_pred eeChHHHHhCcHH
Confidence 4599997665443
No 228
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=29.75 E-value=14 Score=20.90 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=1.7
Q ss_pred HhCCCCCccccCccCCCCc
Q 032328 106 LLKTPICPICRTRVSPSKV 124 (143)
Q Consensus 106 l~~~~~CP~CR~~i~~~~~ 124 (143)
..+.+.||+|+..+...++
T Consensus 5 ~~r~k~C~fc~~~~~~iDY 23 (75)
T 3i1m_R 5 FRRRKFCRFTAEGVQEIDY 23 (75)
T ss_dssp ---------------CCST
T ss_pred CCCCCCCCcccCCCCcCCc
Confidence 4456789999887764443
No 229
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=28.74 E-value=54 Score=15.60 Aligned_cols=8 Identities=13% Similarity=0.276 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 032328 8 SLTLLFVG 15 (143)
Q Consensus 8 ~~~~~~~~ 15 (143)
..+++++-
T Consensus 11 t~Lfi~iP 18 (36)
T 3arc_M 11 TALFVLVP 18 (36)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 230
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=27.96 E-value=8.8 Score=22.87 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=13.8
Q ss_pred HHHhCCCCCccccCccCCC
Q 032328 104 SWLLKTPICPICRTRVSPS 122 (143)
Q Consensus 104 ~wl~~~~~CP~CR~~i~~~ 122 (143)
.|+..--.||.|+.++...
T Consensus 3 ~~LLdILaCP~cK~pL~l~ 21 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLSLL 21 (97)
T ss_dssp TTTCSSCCCCTTSSCCEEC
T ss_pred hHHhhheECCCCCCccccc
Confidence 3555556799999988754
No 231
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.96 E-value=92 Score=22.67 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=32.0
Q ss_pred CCCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCcccc
Q 032328 69 SSPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICR 116 (143)
Q Consensus 69 ~~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR 116 (143)
..-+.|+.=+.++..+......|-||-.||.+. ..+.||+|.
T Consensus 260 ~~f~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~ 301 (320)
T 3mkr_B 260 NPFDICAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTT 301 (320)
T ss_dssp SCCCBBTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTS
T ss_pred CccceecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCc
Confidence 345679988988877888888888998887653 246699994
No 232
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=25.73 E-value=24 Score=20.34 Aligned_cols=14 Identities=14% Similarity=0.570 Sum_probs=9.9
Q ss_pred eEcCCCCCcccHHhH
Q 032328 88 RLLPNCRHSFHAQCI 102 (143)
Q Consensus 88 ~~l~~C~H~FH~~Ci 102 (143)
...+ |+.+||+.|.
T Consensus 18 P~T~-Cn~CYCKkCc 31 (86)
T 3mi9_C 18 PKTA-CTNCYCKKCC 31 (86)
T ss_dssp CSSC-CCSCCSTTGG
T ss_pred CCCC-CCCccccchh
Confidence 4455 8888888775
No 233
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=24.23 E-value=52 Score=17.46 Aligned_cols=34 Identities=29% Similarity=0.648 Sum_probs=24.3
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHH
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCID 103 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~ 103 (143)
....|..|-+.+.-+.......+|+-.-|.+|-+
T Consensus 18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 18 KPESCVPCGKRIKFGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp SCEECTTTCCEECTTCEEEEESSSSCEECGGGGG
T ss_pred CCcccccccCEEEEeeEeeECCCCCCeEchhHhh
Confidence 3478999977775554445545699899999964
No 234
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.11 E-value=53 Score=18.51 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=20.4
Q ss_pred CCCCCccccccccccC-CCeeeEcCCCCCcccHHh
Q 032328 68 GSSPVDCVVCLENFRM-GDKCRLLPNCRHSFHAQC 101 (143)
Q Consensus 68 ~~~~~~C~ICl~~~~~-~~~v~~l~~C~H~FH~~C 101 (143)
......|+.|.+.+-- .+.-...+.|+|--+.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 3466789999999742 111123335887665555
No 235
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=22.25 E-value=58 Score=17.31 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=13.3
Q ss_pred CCCcccHH--hHHHHHhCCC
Q 032328 93 CRHSFHAQ--CIDSWLLKTP 110 (143)
Q Consensus 93 C~H~FH~~--Ci~~wl~~~~ 110 (143)
-||--|.+ ||..|+..+.
T Consensus 17 TG~HcH~EA~tIA~~L~~~~ 36 (61)
T 3ph0_C 17 TGHHCHQEAASIADWLAQEE 36 (61)
T ss_dssp HTTTCHHHHHHHHHHHHTSS
T ss_pred ccchHHHHHHHHHHHHHhCC
Confidence 36767764 9999998753
No 236
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=21.92 E-value=26 Score=21.03 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=26.1
Q ss_pred ccccccccccCCCeeeEcCCCCCcccHHhHHHHHh----C----CCCCccccC
Q 032328 73 DCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLL----K----TPICPICRT 117 (143)
Q Consensus 73 ~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~----~----~~~CP~CR~ 117 (143)
.|..|.+....+..+.....|...||..|...-.. . ...||.|+.
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 34445444444444444446999999999864221 1 134999964
No 237
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=21.15 E-value=39 Score=23.88 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=14.2
Q ss_pred CCCCccccCccCCCCcc
Q 032328 109 TPICPICRTRVSPSKVG 125 (143)
Q Consensus 109 ~~~CP~CR~~i~~~~~~ 125 (143)
...|+.||+.+...++.
T Consensus 18 ~~~c~~c~q~ld~p~l~ 34 (268)
T 3epz_A 18 GPKCIQCGQYLDDPDLK 34 (268)
T ss_dssp CCBCTTTCCBTTCTTCC
T ss_pred CchhHHHHhhccCcccc
Confidence 45699999999988776
No 238
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.13 E-value=98 Score=22.58 Aligned_cols=41 Identities=12% Similarity=-0.019 Sum_probs=31.0
Q ss_pred CCCccccccccccCCCeeeEcCCCCCcccHHhHHHHHhCCCCCcccc
Q 032328 70 SPVDCVVCLENFRMGDKCRLLPNCRHSFHAQCIDSWLLKTPICPICR 116 (143)
Q Consensus 70 ~~~~C~ICl~~~~~~~~v~~l~~C~H~FH~~Ci~~wl~~~~~CP~CR 116 (143)
.-+.|+.=+.++..+......|-||-.||.+. ..+.||+|.
T Consensus 270 ~F~iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~ 310 (325)
T 3mv2_A 270 KFDICAATYKPIYEDTPSVSDPLTGSKYVITE------KDKIDRIAM 310 (325)
T ss_dssp CEEECTTTCCEEESSSCEEECTTTCCEEEGGG------TTSBCSSSS
T ss_pred CceeecCCcccccCCCCCccCCCCCCeechhh------CCCCCCCCc
Confidence 44568888888777888888888998887653 246699994
No 239
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=20.99 E-value=70 Score=23.53 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=23.8
Q ss_pred CCCccccccccccC--CCeeeEcCCCCCcccHHhHHH
Q 032328 70 SPVDCVVCLENFRM--GDKCRLLPNCRHSFHAQCIDS 104 (143)
Q Consensus 70 ~~~~C~ICl~~~~~--~~~v~~l~~C~H~FH~~Ci~~ 104 (143)
....|..|-..+.. .+... ...||..+|+.|...
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~-C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYR-CYRCRAPAHKECLGR 391 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEE-ETTTCCEECGGGGGG
T ss_pred CCCCCccccchhceeCCCCCC-CCCCcCccchhhhhh
Confidence 45689999988742 22222 335999999999864
No 240
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=20.16 E-value=42 Score=19.46 Aligned_cols=15 Identities=0% Similarity=-0.124 Sum_probs=10.0
Q ss_pred CCCCCccccCccCCC
Q 032328 108 KTPICPICRTRVSPS 122 (143)
Q Consensus 108 ~~~~CP~CR~~i~~~ 122 (143)
+...||+|+..+...
T Consensus 18 r~k~C~~c~~~~~~i 32 (88)
T 2vqe_R 18 RKAKVKATLGEFDLR 32 (88)
T ss_dssp CSCCTTTSCCCEETT
T ss_pred CCCCCCccCCCCCcC
Confidence 356699998775543
Done!