Query 032329
Match_columns 143
No_of_seqs 175 out of 1062
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 99.9 5E-27 1.7E-31 187.4 10.4 71 45-116 1-82 (248)
2 1umu_A UMUD'; induced mutagene 99.2 1.8E-10 6.2E-15 81.3 9.9 77 50-135 27-105 (116)
3 1kca_A Repressor protein CI; g 99.1 1E-09 3.5E-14 77.2 10.2 69 51-127 14-89 (109)
4 2hnf_A Repressor protein CI101 99.0 6.7E-09 2.3E-13 75.0 10.7 76 51-135 45-127 (133)
5 1jhf_A LEXA repressor; LEXA SO 98.9 6.4E-09 2.2E-13 79.1 10.7 75 51-135 111-190 (202)
6 3k2z_A LEXA repressor; winged 98.8 2.3E-08 7.9E-13 76.2 9.9 77 50-135 109-187 (196)
7 3bdn_A Lambda repressor; repre 98.7 5.5E-08 1.9E-12 75.0 7.5 76 51-135 141-223 (236)
8 2fjr_A Repressor protein CI; g 97.1 0.0026 9E-08 46.9 8.2 68 57-135 112-179 (189)
9 1w4s_A Polybromo, polybromo 1 75.0 3.1 0.00011 30.6 4.0 47 61-109 6-52 (174)
10 2pp6_A Gifsy-2 prophage ATP-bi 74.3 8.1 0.00028 26.7 5.6 32 81-116 61-92 (102)
11 1jhf_A LEXA repressor; LEXA SO 61.7 24 0.00083 25.6 6.5 49 84-141 125-175 (202)
12 1pcq_O Groes protein; chaperon 48.8 33 0.0011 23.2 4.9 71 64-136 3-88 (97)
13 1p3h_A 10 kDa chaperonin; beta 46.4 55 0.0019 22.1 5.7 72 64-136 5-90 (99)
14 1we3_O CPN10(groes); chaperoni 42.4 32 0.0011 23.4 4.0 70 64-137 8-93 (100)
15 3i4o_A Translation initiation 39.8 12 0.00042 24.4 1.5 12 83-94 53-64 (79)
16 3nx6_A 10KDA chaperonin; bacte 35.8 97 0.0033 20.7 6.4 69 64-136 3-87 (95)
17 1jt8_A EIF-1A, probable transl 29.9 25 0.00087 23.9 1.9 41 51-93 25-68 (102)
18 2dgy_A MGC11102 protein; EIF-1 26.2 48 0.0016 22.8 2.8 45 49-94 18-64 (111)
19 1xne_A Hypothetical protein PF 25.7 77 0.0026 21.8 3.8 22 82-109 33-54 (113)
20 1wid_A DNA-binding protein RAV 22.9 1E+02 0.0035 21.1 4.1 16 82-97 90-105 (130)
21 2z0t_A Putative uncharacterize 22.4 70 0.0024 21.9 3.0 23 82-109 32-54 (109)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=99.94 E-value=5e-27 Score=187.45 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=61.8
Q ss_pred hhhccEEEEEeeCCCCcccccCCCcEEEEEeecCCC-----------CCCCCcCeEEEEecCCCCCceEEEEEEeeCCcE
Q 032329 45 FQGKLTYLYGNKGDQMAPVMGGLGGTLLVRKLPAAD-----------PKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYE 113 (143)
Q Consensus 45 ~~~~v~~~~~v~G~SM~PTl~~ggD~Vlv~k~~~~~-----------~~~~~rGDVVvf~~P~~~~~~~VKRViglpGD~ 113 (143)
++.|+++++.|+|+||+|||++| |+|+|+|+.+.. ...+++||||+|+.|.+++..+||||+|+|||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~G-D~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~ 79 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIG-DFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDK 79 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTT-EEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCE
T ss_pred CeEEEEEEEEeccccccccccCC-CEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCE
Confidence 46789999999999999999998 999999976421 147899999999999888889999999999999
Q ss_pred EEE
Q 032329 114 MVS 116 (143)
Q Consensus 114 vv~ 116 (143)
|..
T Consensus 80 v~i 82 (248)
T 1b12_A 80 VTY 82 (248)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 2
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.18 E-value=1.8e-10 Score=81.32 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=58.0
Q ss_pred EEEEEeeCCCCcc-cccCCCcEEEEEeecCCCCCCCCcCeEEEEecCCCCCceEEEEEEeeCCcEEEEcCCCCCCEEecC
Q 032329 50 TYLYGNKGDQMAP-VMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDK 128 (143)
Q Consensus 50 ~~~~~v~G~SM~P-Tl~~ggD~Vlv~k~~~~~~~~~~rGDVVvf~~P~~~~~~~VKRViglpGD~vv~~~~~~~~~~VP~ 128 (143)
...+.|.|+||+| ||.+| |.+++++. ..++.||||++..+ ++.++||++..++=.+...+..++++.+++
T Consensus 27 ~~~~~v~GdSM~p~~i~~G-d~v~vd~~-----~~~~~gdivv~~~~---~~~~vKr~~~~~~~~L~s~N~~y~~~~i~~ 97 (116)
T 1umu_A 27 TYFVKASGDSMIDGGISDG-DLLIVDSA-----ITASHGDIVIAAVD---GEFTVKKLQLRPTVQLIPMNSAYSPITISS 97 (116)
T ss_dssp EEEEECCSSTTGGGTCCTT-CEEEEETT-----SCCCTTCEEEEEET---TEEEEEEEECSSSCEEECSSTTSCCEECCT
T ss_pred EEEEEECCCCcCCCCCCCC-CEEEEEcC-----CCCCCCCEEEEEEC---CEEEEEEEEeCCcEEEECCCCCCCCEEcCC
Confidence 3578899999999 89998 99999874 35899999999863 478999999977222233455677888865
Q ss_pred C-cEEEEe
Q 032329 129 D-ECWVLA 135 (143)
Q Consensus 129 g-~~wVlG 135 (143)
+ .+-+.|
T Consensus 98 ~~~~~IiG 105 (116)
T 1umu_A 98 EDTLDVFG 105 (116)
T ss_dssp TSCEEEEE
T ss_pred CCeEEEEE
Confidence 3 444444
No 3
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.08 E-value=1e-09 Score=77.16 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=53.2
Q ss_pred EEEEeeCCCCc------ccccCCCcEEEEEeecCCCCCCCCcCeEEEEecCCCCCceEEEEEEeeCCcEEEE-cCCCCCC
Q 032329 51 YLYGNKGDQMA------PVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVS-TDEKDEP 123 (143)
Q Consensus 51 ~~~~v~G~SM~------PTl~~ggD~Vlv~k~~~~~~~~~~rGDVVvf~~P~~~~~~~VKRViglpGD~vv~-~~~~~~~ 123 (143)
..+.|.|+||+ |||.+| |.+++++. ..++.||||++..+. ++.+|||++..+|..... .+..+.+
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~~G-d~v~Vd~~-----~~~~~Gdivv~~~~~--~~~~vKrl~~~~~~~~L~s~N~~y~~ 85 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFPDG-MLILVDPE-----QAVEPGDFCIARLGG--DEFTFKKLIRDSGQVFLQPLNPQYPM 85 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCCTT-CEEEEETT-----SCCCTTCEEEEECST--TCEEEEEEEEETTEEEEECSSTTSCC
T ss_pred EEEEEeCcCcCCCCCCCCeeCCC-CEEEEecC-----CcCCCCCEEEEEECC--CeEEEEEEEEeCCEEEEEECCCCCCC
Confidence 46789999999 999998 99999874 468999999998642 578999999876654222 3445666
Q ss_pred EEec
Q 032329 124 FVLD 127 (143)
Q Consensus 124 ~~VP 127 (143)
+.++
T Consensus 86 ~~~~ 89 (109)
T 1kca_A 86 IPCN 89 (109)
T ss_dssp EECC
T ss_pred EEcC
Confidence 6664
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.96 E-value=6.7e-09 Score=75.00 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=56.8
Q ss_pred EEEEeeCCCCc------ccccCCCcEEEEEeecCCCCCCCCcCeEEEEecCCCCCceEEEEEEeeCCcEEEE-cCCCCCC
Q 032329 51 YLYGNKGDQMA------PVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVS-TDEKDEP 123 (143)
Q Consensus 51 ~~~~v~G~SM~------PTl~~ggD~Vlv~k~~~~~~~~~~rGDVVvf~~P~~~~~~~VKRViglpGD~vv~-~~~~~~~ 123 (143)
..+.|.|+||. |+|.+| |.+++++. ..++.||+|++... .++.++||++..+|..... .+..+.+
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~~G-d~v~vd~~-----~~~~~Gdivv~~~~--~~~~~vKrl~~~~~~~~L~s~N~~y~~ 116 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFPDG-MLILVDPE-----QAVEPGDFCIARLG--GDEFTFAKLIRDSGQVFLQPLNPQYPM 116 (133)
T ss_dssp EEEECCSSTTCCC---CCCCCTT-CEEEEETT-----SCCCTTSEEEEEET--TTEEEEEEEEEETTEEEEECSSTTSCC
T ss_pred EEEEEeCCCcCCCcCCCCccCCC-CEEEEccC-----CCCCCCCEEEEEEC--CCEEEEEEEEEeCCeEEEEECCCCCCC
Confidence 47889999999 999998 99999973 46899999999864 2578999999876643222 3445666
Q ss_pred EEecCCcEEEEe
Q 032329 124 FVLDKDECWVLA 135 (143)
Q Consensus 124 ~~VP~g~~wVlG 135 (143)
+.++ +++-+.|
T Consensus 117 ~~~~-~~~~IiG 127 (133)
T 2hnf_A 117 IPCN-ESCSVVG 127 (133)
T ss_dssp EECS-TTEEEEE
T ss_pred EEcC-CCCEEEE
Confidence 7665 4455554
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.95 E-value=6.4e-09 Score=79.15 Aligned_cols=75 Identities=25% Similarity=0.321 Sum_probs=58.3
Q ss_pred EEEEeeCCCCccc-ccCCCcEEEEEeecCCCCCCCCcCeEEEEecCCCCCceEEEEEEeeCCcEEEEc--CCCCCCEEec
Q 032329 51 YLYGNKGDQMAPV-MGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVST--DEKDEPFVLD 127 (143)
Q Consensus 51 ~~~~v~G~SM~PT-l~~ggD~Vlv~k~~~~~~~~~~rGDVVvf~~P~~~~~~~VKRViglpGD~vv~~--~~~~~~~~VP 127 (143)
..+.|.|+||.|+ |.+| |.+++++. ..++.||||++.. +++..|||+. .+|+.+... +..++++.++
T Consensus 111 ~~~~v~GdSM~p~~i~~G-d~v~vd~~-----~~~~~G~i~v~~~---~~~~~vKrl~-~~~~~~~l~s~N~~y~~~~~~ 180 (202)
T 1jhf_A 111 FLLRVSGMSMKDIGIMDG-DLLAVHKT-----QDVRNGQVVVARI---DDEVTVKRLK-KQGNKVELLPENSEFKPIVVD 180 (202)
T ss_dssp EEEECCSSTTGGGTCCTT-CEEEEEEC-----SCCCTTSEEEEEE---TTEEEEEEEE-EETTEEEEECSSTTCCCEEEE
T ss_pred EEEEECCCCCCCCCCCCC-CEEEEecc-----CCcCCCeEEEEEE---CCEEEEEEEE-EeCCEEEEEECCCCCCCEEcc
Confidence 4788999999999 9998 99999874 4588999999986 3679999999 577775443 4567788887
Q ss_pred C--CcEEEEe
Q 032329 128 K--DECWVLA 135 (143)
Q Consensus 128 ~--g~~wVlG 135 (143)
. +++-+.|
T Consensus 181 ~~~~~~~IiG 190 (202)
T 1jhf_A 181 LRQQSFTIEG 190 (202)
T ss_dssp TTTSCEEEEE
T ss_pred CCCCceEEEE
Confidence 3 3455544
No 6
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.82 E-value=2.3e-08 Score=76.20 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=60.3
Q ss_pred EEEEEeeCCCC-cccccCCCcEEEEEeecCCCCCCCCcCeEEEEecCCCCCceEEEEEEeeCCcEEEE-cCCCCCCEEec
Q 032329 50 TYLYGNKGDQM-APVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVS-TDEKDEPFVLD 127 (143)
Q Consensus 50 ~~~~~v~G~SM-~PTl~~ggD~Vlv~k~~~~~~~~~~rGDVVvf~~P~~~~~~~VKRViglpGD~vv~-~~~~~~~~~VP 127 (143)
.+.+.|.|+|| +|++.+| |.+++++. ..++.||||++.. +++..|||+.-.+|..... .+..++++.++
T Consensus 109 ~f~l~v~GdSM~~p~i~~G-D~viv~~~-----~~~~~G~ivv~~~---~~~~~vKr~~~~~~~~~L~~~N~~y~~i~i~ 179 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHICDG-DLVLVRRQ-----DWAQNGDIVAAMV---DGEVTLAKFYQRGDTVELRPANREMSSMFFR 179 (196)
T ss_dssp EEEEECCSSTTGGGTCCTT-CEEEEEEC-----SCCCTTCEEEEEE---TTEEEEEEEEEETTEEEEECSCTTSCCEEEE
T ss_pred EEEEEEeCCCcCCCCCCCC-CEEEEecc-----CcCCCCCEEEEEE---CCcEEEEEEEEECCEEEEEECCCCCCCEEec
Confidence 45789999999 6999998 99999984 4678999999985 2589999998876643222 35567888888
Q ss_pred CCcEEEEe
Q 032329 128 KDECWVLA 135 (143)
Q Consensus 128 ~g~~wVlG 135 (143)
.+++-+.|
T Consensus 180 ~~~~~i~G 187 (196)
T 3k2z_A 180 AEKVKILG 187 (196)
T ss_dssp GGGCEEEE
T ss_pred CCCEEEEE
Confidence 77776666
No 7
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.66 E-value=5.5e-08 Score=75.00 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=55.6
Q ss_pred EEEEeeCCCCc------ccccCCCcEEEEEeecCCCCCCCCcCeEEEEecCCCCCceEEEEEEeeCCcEEEE-cCCCCCC
Q 032329 51 YLYGNKGDQMA------PVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVS-TDEKDEP 123 (143)
Q Consensus 51 ~~~~v~G~SM~------PTl~~ggD~Vlv~k~~~~~~~~~~rGDVVvf~~P~~~~~~~VKRViglpGD~vv~-~~~~~~~ 123 (143)
..+.|.|+||. |+|.+| |.|+|++- ..++.||+|++.. +.++..|||+...+|..+.. .++.+++
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~~G-d~v~vd~~-----~~~~~g~ivv~~~--~~~~~~vKrl~~~~~~~~L~s~N~~y~~ 212 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFPDG-MLILVDPE-----QAVEPGDFCIARL--GGDEFTFKKLIRGSGQVFLQPLNPQYPM 212 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCCSS-CEEEECCS-----SCCCTTSEEEEES--TTTCCCCEEEECCSSSCEEECSSTTSCC
T ss_pred EEEEEeCCCcCCCCCCCCcCCCC-CEEEECCC-----CCCCCCcEEEEEE--CCCeEEEEEEEEcCCcEEEEeCCCCCCC
Confidence 46789999999 999998 99999874 4688999999985 34578999999877765333 3445666
Q ss_pred EEecCCcEEEEe
Q 032329 124 FVLDKDECWVLA 135 (143)
Q Consensus 124 ~~VP~g~~wVlG 135 (143)
+.++ +++-+.|
T Consensus 213 ~~~~-~~~~IiG 223 (236)
T 3bdn_A 213 IPCN-ESCSVVG 223 (236)
T ss_dssp BC---CCCEEEE
T ss_pred eecC-CCcEEEE
Confidence 6665 3444444
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=97.06 E-value=0.0026 Score=46.92 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=47.8
Q ss_pred CCCCcccccCCCcEEEEEeecCCCCCCCCcCeEEEEecCCCCCceEEEEEEeeCCcEEEEcCCCCCCEEecCCcEEEEe
Q 032329 57 GDQMAPVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLA 135 (143)
Q Consensus 57 G~SM~PTl~~ggD~Vlv~k~~~~~~~~~~rGDVVvf~~P~~~~~~~VKRViglpGD~vv~~~~~~~~~~VP~g~~wVlG 135 (143)
+.+|...-.+| |.|+|++- .+..|+|+++.. +++.+|||+.-.+|+.+...+.+. ++.++.+++-+.|
T Consensus 112 ~~~~~~v~~~G-d~v~Vd~~------~~~~g~i~vv~~---~g~~~vKrl~~~~~~~i~L~s~N~-~~~i~~~~i~IiG 179 (189)
T 2fjr_A 112 LTDGMAIRSEG-KIYFVDKQ------ASLSDGLWLVDI---KGAISIRELTKLPGRKLHVAGGKV-PFECGIDDIKTLG 179 (189)
T ss_dssp CSSEEEEEETT-EEEEEETT------CCSCSEEEEEEE---TTEEEEEEEEEETTTEEEEESSSS-CEEEETTSSEEEE
T ss_pred CCCeEEEeeCC-cEEEEEcC------CccCCCEEEEEe---CCeEEEEEEEECCCCEEEEEeCCC-CeEecccceEEEE
Confidence 45666655666 99999873 356799999985 357899999999887754433332 6777766655554
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=75.00 E-value=3.1 Score=30.56 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=22.6
Q ss_pred cccccCCCcEEEEEeecCCCCCCCCcCeEEEEecCCCCCceEEEEEEee
Q 032329 61 APVMGGLGGTLLVRKLPAADPKRVSVGDVVVMKDPEKSDNYIVRRLAAI 109 (143)
Q Consensus 61 ~PTl~~ggD~Vlv~k~~~~~~~~~~rGDVVvf~~P~~~~~~~VKRVigl 109 (143)
+|-...+ ++.....+... +..++.||-|.+.++.++...+|-||..+
T Consensus 6 ~~~~~~~-~r~~y~~~~~~-g~~~~vGD~V~v~~~~~~~~p~I~rI~~i 52 (174)
T 1w4s_A 6 SAGLSSL-HRTYSQDCSFK-NSMYHVGDYVYVEPAEANLQPHIVCIERL 52 (174)
T ss_dssp ----------------------CCCTTCEEEECCSSTTSCCEEEEEEEE
T ss_pred CccccCC-CcEEeEEEEEC-CEEEECCCEEEEeCCCCCCCCEEEEEEEE
Confidence 3666655 66666665555 46899999999987765667888898876
No 10
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=74.29 E-value=8.1 Score=26.66 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=26.5
Q ss_pred CCCCCcCeEEEEecCCCCCceEEEEEEeeCCcEEEE
Q 032329 81 PKRVSVGDVVVMKDPEKSDNYIVRRLAAIEGYEMVS 116 (143)
Q Consensus 81 ~~~~~rGDVVvf~~P~~~~~~~VKRViglpGD~vv~ 116 (143)
.+.|++||.|++. ...+.|+|-.-..|-.++.
T Consensus 61 gYrP~r~D~Vv~~----Gk~y~Vtr~~~~ngk~~i~ 92 (102)
T 2pp6_A 61 NVIPRRGDRVVLR----GSEFTVTRIRRFNGKPQLT 92 (102)
T ss_dssp SCCCCTTCEEEET----TEEEEEEEEEEETTEEEEE
T ss_pred CcccCCCCEEEEc----CcEEEEEEEEEECCcEEEE
Confidence 4789999999997 5679999999888877543
No 11
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=61.74 E-value=24 Score=25.56 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=29.0
Q ss_pred CCcCeEEEEecCC--CCCceEEEEEEeeCCcEEEEcCCCCCCEEecCCcEEEEecCCCCC
Q 032329 84 VSVGDVVVMKDPE--KSDNYIVRRLAAIEGYEMVSTDEKDEPFVLDKDECWVLADNENMK 141 (143)
Q Consensus 84 ~~rGDVVvf~~P~--~~~~~~VKRViglpGD~vv~~~~~~~~~~VP~g~~wVlGDNr~~S 141 (143)
+..||+|+++... ..++.++=++ .|+..+ ..+..+.|.+++.+||+...
T Consensus 125 i~~Gd~v~vd~~~~~~~G~i~v~~~---~~~~~v------Krl~~~~~~~~l~s~N~~y~ 175 (202)
T 1jhf_A 125 IMDGDLLAVHKTQDVRNGQVVVARI---DDEVTV------KRLKKQGNKVELLPENSEFK 175 (202)
T ss_dssp CCTTCEEEEEECSCCCTTSEEEEEE---TTEEEE------EEEEEETTEEEEECSSTTCC
T ss_pred CCCCCEEEEeccCCcCCCeEEEEEE---CCEEEE------EEEEEeCCEEEEEECCCCCC
Confidence 8899999997421 1233332222 443322 12345788999999997543
No 12
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=48.85 E-value=33 Score=23.17 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=39.8
Q ss_pred ccCCCcEEEEEeecCCC------------CCCCCcCeEEEEecC--CCCCceEEEEEEeeCCcEEEEcC-CCCCCEEecC
Q 032329 64 MGGLGGTLLVRKLPAAD------------PKRVSVGDVVVMKDP--EKSDNYIVRRLAAIEGYEMVSTD-EKDEPFVLDK 128 (143)
Q Consensus 64 l~~ggD~Vlv~k~~~~~------------~~~~~rGDVVvf~~P--~~~~~~~VKRViglpGD~vv~~~-~~~~~~~VP~ 128 (143)
|.+=+|+|||.+..... ..+++.|.||.+-.- .+.++ .+. .---.||+|+... .....+++-.
T Consensus 3 i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G~-~~p-~~VkvGD~Vlf~k~y~Gtevk~dg 80 (97)
T 1pcq_O 3 IRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVGNGRILENGE-VKP-LDVKVGDIVIFNDGYGVKSEKIDN 80 (97)
T ss_dssp EEECSSEEEEEECCTTCTTTTSSCCCCCCSCCCCEEEEEEECSEECTTSSS-CEE-CSCCTTCEEEECCCSSCEEEEETT
T ss_pred ceEcCCEEEEEEccccccccceEEeCcccccCCcccEEEEEcCceecCCCC-EEe-cccCCCCEEEECCccCCeEEEECC
Confidence 33435999998864221 135778888877421 01121 110 0123589877665 5556677766
Q ss_pred CcEEEEec
Q 032329 129 DECWVLAD 136 (143)
Q Consensus 129 g~~wVlGD 136 (143)
.+|.++-+
T Consensus 81 eey~i~re 88 (97)
T 1pcq_O 81 EEVLIMSE 88 (97)
T ss_dssp EEEEEEEG
T ss_pred EEEEEEEh
Confidence 66777654
No 13
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=46.35 E-value=55 Score=22.09 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=38.6
Q ss_pred ccCCCcEEEEEeecCCC------------CCCCCcCeEEEEecCCCCCceEEEEE--EeeCCcEEEEcCCCCCCEEecCC
Q 032329 64 MGGLGGTLLVRKLPAAD------------PKRVSVGDVVVMKDPEKSDNYIVRRL--AAIEGYEMVSTDEKDEPFVLDKD 129 (143)
Q Consensus 64 l~~ggD~Vlv~k~~~~~------------~~~~~rGDVVvf~~P~~~~~~~VKRV--iglpGD~vv~~~~~~~~~~VP~g 129 (143)
|.+=+|+|||.+..... ..+++.|.||.+-. ...++.=.+|+ ---.||+|+........+++-..
T Consensus 5 i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~-G~~~~~G~~~~p~~VkvGD~Vlf~ky~Gtevk~dge 83 (99)
T 1p3h_A 5 IKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGP-GRWDEDGEKRIPLDVAEGDTVIYSKYGGTEIKYNGE 83 (99)
T ss_dssp EEECTTEEEEEECCCCCBCTTSCBCCCSSCCSEEEEEEEEECC-CEECSSSSCEECCSCCTTCEEEEECTTCEEEEETTE
T ss_pred eEEeCCEEEEEEccccccccceEEeCcccccCCceEEEEEECC-CcCcCCCCEEEccccCCCCEEEECCcCCeEEEECCE
Confidence 44445999998864221 13466777777742 10000000222 12258887766555566777666
Q ss_pred cEEEEec
Q 032329 130 ECWVLAD 136 (143)
Q Consensus 130 ~~wVlGD 136 (143)
+|.++-+
T Consensus 84 ey~i~re 90 (99)
T 1p3h_A 84 EYLILSA 90 (99)
T ss_dssp EEEEEEG
T ss_pred EEEEEEh
Confidence 6776654
No 14
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=42.37 E-value=32 Score=23.36 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=39.7
Q ss_pred ccCCCcEEEEEeecCCC------------CCCCCcCeEEEEecCC--CCCceEEEEE--EeeCCcEEEEcCCCCCCEEec
Q 032329 64 MGGLGGTLLVRKLPAAD------------PKRVSVGDVVVMKDPE--KSDNYIVRRL--AAIEGYEMVSTDEKDEPFVLD 127 (143)
Q Consensus 64 l~~ggD~Vlv~k~~~~~------------~~~~~rGDVVvf~~P~--~~~~~~VKRV--iglpGD~vv~~~~~~~~~~VP 127 (143)
|.+=+|+|||.+..... ..+++.|.||.+-.-. +.+ +|+ ---.||+|+........+++.
T Consensus 8 i~PL~DRVlVk~~e~e~kT~gGI~LP~sakeKp~~G~VvAVG~G~~~~~G----~~~p~~VkvGD~Vlf~ky~Gtevk~d 83 (100)
T 1we3_O 8 IKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENG----QRVPLEVKEGDIVVFAKYGGTEIEID 83 (100)
T ss_dssp EEECTTCEEEEECCCCSSCTTCCCCCTTTSCCCSEEEESCCCCCEECTTS----CEECCSCCTTCEEEECTTCSEEEECS
T ss_pred eEEeCCEEEEEEccccccccceEEeCcccccCCcCCEEEEECCCcCCCCC----CEEeeecCCCCEEEECCCCCeEEEEC
Confidence 66656999998864221 1356677766664210 111 122 123588877665555667776
Q ss_pred CCcEEEEecC
Q 032329 128 KDECWVLADN 137 (143)
Q Consensus 128 ~g~~wVlGDN 137 (143)
..+|.++-+.
T Consensus 84 geeyli~re~ 93 (100)
T 1we3_O 84 GEEYVILSER 93 (100)
T ss_dssp SCEEEEECTT
T ss_pred CEEEEEEEhH
Confidence 6667776543
No 15
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=39.77 E-value=12 Score=24.40 Aligned_cols=12 Identities=33% Similarity=0.318 Sum_probs=8.6
Q ss_pred CCCcCeEEEEec
Q 032329 83 RVSVGDVVVMKD 94 (143)
Q Consensus 83 ~~~rGDVVvf~~ 94 (143)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 467788888753
No 16
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=35.81 E-value=97 Score=20.67 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=34.5
Q ss_pred ccCCCcEEEEEeecCCC------------CCCCCcCeEEEEecC--CCCCceEEEEE--EeeCCcEEEEcCCCCCCEEec
Q 032329 64 MGGLGGTLLVRKLPAAD------------PKRVSVGDVVVMKDP--EKSDNYIVRRL--AAIEGYEMVSTDEKDEPFVLD 127 (143)
Q Consensus 64 l~~ggD~Vlv~k~~~~~------------~~~~~rGDVVvf~~P--~~~~~~~VKRV--iglpGD~vv~~~~~~~~~~VP 127 (143)
|.+=+|+||+.+..... ..+++.|.||..-.- .+.+ +|+ ---.||+|.........+++-
T Consensus 3 i~PL~DRVlVk~~e~e~kT~gGI~LP~~a~eK~~~G~VvAVG~G~~~~~G----~~~p~~VkvGD~Vl~~ky~Gtevk~d 78 (95)
T 3nx6_A 3 IKPLHDRVVVKPIEADEVSAGGIVIPDSAKEKSTKGEVVAIGAGKPLDNG----SLHAPVVKVGDKVIYGQYAGSSYKSE 78 (95)
T ss_dssp CCCCTTEEEEEEC-------------------CEEEEEEEECSCEECTTS----CEECCSCCTTCEEEECTTCSEEEEET
T ss_pred eEEcCCEEEEEEccccccccceEEeCccccCCccccEEEEECCCeECCCC----CEEccccCCCCEEEECCcCCeEEEEC
Confidence 44445999998754220 124566666666421 0111 111 123478876655555566776
Q ss_pred CCcEEEEec
Q 032329 128 KDECWVLAD 136 (143)
Q Consensus 128 ~g~~wVlGD 136 (143)
..+|.++-+
T Consensus 79 g~ey~i~re 87 (95)
T 3nx6_A 79 GVEYKVLRE 87 (95)
T ss_dssp TEEEEEEEG
T ss_pred CEEEEEEEH
Confidence 566776644
No 17
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=29.92 E-value=25 Score=23.92 Aligned_cols=41 Identities=29% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEeeCCCCccc-ccCCCcEEEEEeecCCC--CCCCCcCeEEEEe
Q 032329 51 YLYGNKGDQMAPV-MGGLGGTLLVRKLPAAD--PKRVSVGDVVVMK 93 (143)
Q Consensus 51 ~~~~v~G~SM~PT-l~~ggD~Vlv~k~~~~~--~~~~~rGDVVvf~ 93 (143)
.+...-|+.|.=. +.+| ..+++. ++..+ .--+.+||.|++.
T Consensus 25 ~V~~~lgn~~~~V~l~nG-~~~la~-i~GKmRk~IwI~~GD~VlVe 68 (102)
T 1jt8_A 25 IIEQMLGASRVRVRCLDG-KTRLGR-IPGRLKNRIWVREGDVVIVK 68 (102)
T ss_dssp EEECSSCSSEEEEEEETT-EEEEEE-CCHHHHHHHCCCSCEEEEEC
T ss_pred EEEEEcCCCEEEEEECCC-CEEEEE-EcccceeeEEecCCCEEEEE
Confidence 3444455555543 3343 555553 11110 0136788888885
No 18
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.25 E-value=48 Score=22.81 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=25.9
Q ss_pred cEEEEEeeCCCCcccccCCCcEEEEEeecCCCCC--CCCcCeEEEEec
Q 032329 49 LTYLYGNKGDQMAPVMGGLGGTLLVRKLPAADPK--RVSVGDVVVMKD 94 (143)
Q Consensus 49 v~~~~~v~G~SM~PTl~~ggD~Vlv~k~~~~~~~--~~~rGDVVvf~~ 94 (143)
.+.+...-|+.|.=....+|..+|+. ++..+.+ -+.+||+|++..
T Consensus 18 ~g~V~~~lgn~~f~V~l~nG~~~la~-i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 18 IVRVLRTPGNNLHEVETAQGQRFLVS-MPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp EEEEEECCSSSEEEEECTTSCEEEEE-CCTTCCSCCCCCSSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCCEEEEE-echhhcccEEEcCCCEEEEEe
Confidence 44555666777765443334677663 3322211 367899999973
No 19
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=25.70 E-value=77 Score=21.80 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=15.4
Q ss_pred CCCCcCeEEEEecCCCCCceEEEEEEee
Q 032329 82 KRVSVGDVVVMKDPEKSDNYIVRRLAAI 109 (143)
Q Consensus 82 ~~~~rGDVVvf~~P~~~~~~~VKRVigl 109 (143)
..++.||.++|.. .+.-+|+.+
T Consensus 33 ~~i~vGD~I~f~~------~l~~~V~~v 54 (113)
T 1xne_A 33 KDIKRGDKIIFND------LIPAEVVEV 54 (113)
T ss_dssp TTCCTTCEEEETT------TEEEEEEEE
T ss_pred hccCCCCEEEEcc------ceEEEEEEE
Confidence 5689999999974 355555543
No 20
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=22.89 E-value=1e+02 Score=21.15 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=12.8
Q ss_pred CCCCcCeEEEEecCCC
Q 032329 82 KRVSVGDVVVMKDPEK 97 (143)
Q Consensus 82 ~~~~rGDVVvf~~P~~ 97 (143)
+.++.||+|+|..-.+
T Consensus 90 ~~L~~GD~~~F~~~~~ 105 (130)
T 1wid_A 90 KNLRAGDVVSFSRSNG 105 (130)
T ss_dssp TTCCTTCEEEEEECCS
T ss_pred cCCCCCCEEEEEEecC
Confidence 6799999999975433
No 21
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=22.36 E-value=70 Score=21.90 Aligned_cols=23 Identities=13% Similarity=0.510 Sum_probs=15.7
Q ss_pred CCCCcCeEEEEecCCCCCceEEEEEEee
Q 032329 82 KRVSVGDVVVMKDPEKSDNYIVRRLAAI 109 (143)
Q Consensus 82 ~~~~rGDVVvf~~P~~~~~~~VKRVigl 109 (143)
..++.||.++|. ++.+.-+|+.+
T Consensus 32 ~~ikvGD~I~f~-----~~~l~~~V~~v 54 (109)
T 2z0t_A 32 RQIKPGDIIIFE-----GGKLKVKVKGI 54 (109)
T ss_dssp GGCCTTCEEEEG-----GGTEEEEEEEE
T ss_pred hcCCCCCEEEEC-----CCEEEEEEEEE
Confidence 468999999993 33455566654
Done!