BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032330
MATAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPP
RIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTE
PADFEVKESNNLSLVEYELVNVE

High Scoring Gene Products

Symbol, full name Information P value
AT4G28440 protein from Arabidopsis thaliana 4.5e-43
AT2G33845 protein from Arabidopsis thaliana 5.7e-43
AT1G03810 protein from Arabidopsis thaliana 1.6e-40
AT1G23750 protein from Arabidopsis thaliana 1.1e-39
AT1G10590 protein from Arabidopsis thaliana 7.0e-38

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032330
        (143 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2121313 - symbol:AT4G28440 "AT4G28440" species...   455  4.5e-43   1
TAIR|locus:505006287 - symbol:AT2G33845 "AT2G33845" speci...   454  5.7e-43   1
TAIR|locus:2024239 - symbol:AT1G03810 "AT1G03810" species...   431  1.6e-40   1
TAIR|locus:2034813 - symbol:AT1G23750 "AT1G23750" species...   423  1.1e-39   1
TAIR|locus:2019918 - symbol:AT1G10590 "AT1G10590" species...   406  7.0e-38   1


>TAIR|locus:2121313 [details] [associations]
            symbol:AT4G28440 "AT4G28440" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006511 "ubiquitin-dependent protein catabolic
            process" evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
            [GO:0051788 "response to misfolded protein" evidence=RCA]
            [GO:0080129 "proteasome core complex assembly" evidence=RCA]
            GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL021749
            EMBL:AL161572 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            KO:K07466 EMBL:AY050905 EMBL:AY056432 EMBL:AY091407 EMBL:AY088082
            IPI:IPI00540456 PIR:T04614 RefSeq:NP_194573.1 UniGene:At.23199
            PDB:1WJJ PDBsum:1WJJ ProteinModelPortal:O49453 SMR:O49453
            IntAct:O49453 STRING:O49453 PaxDb:O49453 PRIDE:O49453
            EnsemblPlants:AT4G28440.1 GeneID:828961 KEGG:ath:AT4G28440
            TAIR:At4g28440 eggNOG:NOG287921 HOGENOM:HOG000237696
            InParanoid:O49453 OMA:IVECLIG PhylomeDB:O49453
            ProtClustDB:CLSN2717599 EvolutionaryTrace:O49453
            Genevestigator:O49453 GermOnline:AT4G28440 Uniprot:O49453
        Length = 153

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 91/142 (64%), Positives = 104/142 (73%)

Query:     1 MATAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXX 60
             +AT  +T KRKPVF+KV+QLKPGTTGHTLTVKV+ +  V V   R               
Sbjct:     9 VATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIV-VPVTRKTRPASSLSRPSQPS 67

Query:    61 XIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTE 120
              I ECL+GD+TG I FTARNDQVD+M PG TVILRN++IDMFKG+MRL VDKWGRIE T 
Sbjct:    68 RIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATG 127

Query:   121 PADFEVKESNNLSLVEYELVNV 142
              A F VKE NNLSLVEYEL+NV
Sbjct:   128 AASFTVKEDNNLSLVEYELINV 149


>TAIR|locus:505006287 [details] [associations]
            symbol:AT2G33845 "AT2G33845" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:U78721
            UniGene:At.19977 KO:K07466 HOGENOM:HOG000237696
            ProtClustDB:CLSN2717599 UniGene:At.37877 UniGene:At.72891
            EMBL:AY087128 EMBL:AY136315 EMBL:BT000423 IPI:IPI00527615
            RefSeq:NP_565774.1 ProteinModelPortal:Q8RYC3 SMR:Q8RYC3
            PaxDb:Q8RYC3 PRIDE:Q8RYC3 EnsemblPlants:AT2G33845.1 GeneID:817953
            KEGG:ath:AT2G33845 TAIR:At2g33845 eggNOG:NOG318723
            InParanoid:Q8RYC3 OMA:RISECLV PhylomeDB:Q8RYC3 ArrayExpress:Q8RYC3
            Genevestigator:Q8RYC3 Uniprot:Q8RYC3
        Length = 182

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 95/134 (70%), Positives = 102/134 (76%)

Query:     9 KRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXXXIAECLVG 68
             K+KPVF+KVDQLKPGT+GHTLTVKVV    V   KP GA              I+ECLVG
Sbjct:    52 KKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVP-QKP-GAASSSHLRPAR----ISECLVG 105

Query:    69 DDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKE 128
             D+T  I FTARNDQV++M PG TV LRNAKIDMFKGSMRLAVDKWGRIE TEPAD  VKE
Sbjct:   106 DETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKE 165

Query:   129 SNNLSLVEYELVNV 142
              NNLSLVEYELVNV
Sbjct:   166 DNNLSLVEYELVNV 179


>TAIR|locus:2024239 [details] [associations]
            symbol:AT1G03810 "AT1G03810" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC003027
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K07466
            HOGENOM:HOG000237696 ProtClustDB:CLSN2717599 IPI:IPI00518415
            PIR:F86168 RefSeq:NP_171877.1 UniGene:At.51473
            ProteinModelPortal:Q9ZWA3 SMR:Q9ZWA3 EnsemblPlants:AT1G03810.1
            GeneID:839403 KEGG:ath:AT1G03810 TAIR:At1g03810 eggNOG:NOG289657
            InParanoid:Q9ZWA3 OMA:TQPADFK PhylomeDB:Q9ZWA3
            Genevestigator:Q9ZWA3 Uniprot:Q9ZWA3
        Length = 143

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 88/139 (63%), Positives = 101/139 (72%)

Query:     3 TAGATA-KRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXXX 61
             T   TA KRKPVF+KVDQLKPGT+GHTL VKV+ S PV   KP                 
Sbjct:     7 TNATTAPKRKPVFVKVDQLKPGTSGHTLIVKVLESNPV---KP-AIRKSSLTQQPISSPR 62

Query:    62 IAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEP 121
             IAECL+GDDTG I FTARNDQVD+M  G TVILRNAKID+FK +MR+AVD+WGRIE+T P
Sbjct:    63 IAECLIGDDTGCILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGP 122

Query:   122 ADFEVKESNNLSLVEYELV 140
               FEV  +NNLSLVEYE++
Sbjct:   123 VSFEVNRANNLSLVEYEVI 141


>TAIR|locus:2034813 [details] [associations]
            symbol:AT1G23750 "AT1G23750" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND]
            EMBL:CP002684 GenomeReviews:CT485782_GR Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC005990 KO:K07466
            HOGENOM:HOG000237696 ProtClustDB:CLSN2717599 EMBL:AY085502
            EMBL:BT002959 EMBL:BT004437 IPI:IPI00527528 PIR:F86371
            RefSeq:NP_564202.1 UniGene:At.41522 ProteinModelPortal:Q9ZUC0
            SMR:Q9ZUC0 IntAct:Q9ZUC0 PaxDb:Q9ZUC0 PRIDE:Q9ZUC0
            EnsemblPlants:AT1G23750.1 GeneID:838985 KEGG:ath:AT1G23750
            TAIR:At1g23750 eggNOG:NOG298870 InParanoid:Q9ZUC0 OMA:RISECIV
            PhylomeDB:Q9ZUC0 ArrayExpress:Q9ZUC0 Genevestigator:Q9ZUC0
            Uniprot:Q9ZUC0
        Length = 137

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 86/142 (60%), Positives = 104/142 (73%)

Query:     1 MATAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXX 60
             MA +     +KP F KVDQL+PGT+GH + VK+VS+K V + K R               
Sbjct:     1 MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMV-LQKGRA------DGPQARQL 53

Query:    61 XIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTE 120
              I+EC+VGD+TG I FTARNDQVD+M  G+TV LRNAKIDM+KGSMRLAVDKWGR+EVTE
Sbjct:    54 RISECIVGDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTE 113

Query:   121 PADFEVKESNNLSLVEYELVNV 142
             PA F+VKE  N+SL+EYELVNV
Sbjct:   114 PASFKVKEDTNMSLIEYELVNV 135


>TAIR|locus:2019918 [details] [associations]
            symbol:AT1G10590 "AT1G10590" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AC007067
            KO:K07466 HOGENOM:HOG000237696 ProtClustDB:CLSN2717599
            IPI:IPI00516961 RefSeq:NP_849633.1 UniGene:At.14987
            ProteinModelPortal:Q9XIJ0 SMR:Q9XIJ0 STRING:Q9XIJ0 PRIDE:Q9XIJ0
            EnsemblPlants:AT1G10590.3 GeneID:837601 KEGG:ath:AT1G10590
            TAIR:At1g10590 InParanoid:Q9XIJ0 OMA:IEYELVS PhylomeDB:Q9XIJ0
            Genevestigator:Q9XIJ0 Uniprot:Q9XIJ0
        Length = 153

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 88/144 (61%), Positives = 104/144 (72%)

Query:     1 MATAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXX 60
             MA A  +A RKPVF KV++L+PGT GH+L VKVV++K V     RG              
Sbjct:    15 MAEA-TSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVM---QRGGGRPMGPQSRQMR- 69

Query:    61 XIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTE 120
              IAECLVGD+TG I FTARNDQVD+M  G+ V LRNAKIDM+KGSMRLAVD+WGR+EV E
Sbjct:    70 -IAECLVGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAE 128

Query:   121 -PADFEVKESNNLSLVEYELVNVE 143
              P D  VK+ NNLSL+EYELV+VE
Sbjct:   129 EPTDITVKDDNNLSLIEYELVSVE 152


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       129   0.00091  102 3  11 22  0.42    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  115 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.46u 0.22s 10.68t   Elapsed:  00:00:00
  Total cpu time:  10.46u 0.22s 10.68t   Elapsed:  00:00:00
  Start:  Sat May 11 01:50:37 2013   End:  Sat May 11 01:50:37 2013

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