BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032330
         (143 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJJ|A Chain A, Solution Structure Of Hypothetical Protein F20o9.120 From
           Arabidopsis Thaliana
          Length = 145

 Score =  172 bits (436), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 96/132 (72%), Gaps = 1/132 (0%)

Query: 7   TAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXXXIAECL 66
           T KRKPVF+KV+QLKPGTTGHTLTVKV+ +  + V   R                I ECL
Sbjct: 9   TVKRKPVFVKVEQLKPGTTGHTLTVKVIEAN-IVVPVTRKTRPASSLSRPSQPSRIVECL 67

Query: 67  VGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEV 126
           +GD+TG I FTARNDQVD+M PG TVILRN++IDMFKG+MRL VDKWGRIE T  A F V
Sbjct: 68  IGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTV 127

Query: 127 KESNNLSLVEYE 138
           KE NNLSLVEYE
Sbjct: 128 KEDNNLSLVEYE 139


>pdb|1O7I|A Chain A, Crystal Structure Of A Single Stranded Dna Binding Protein
 pdb|1O7I|B Chain B, Crystal Structure Of A Single Stranded Dna Binding Protein
          Length = 119

 Score = 36.6 bits (83), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 16  KVDQLKPGTTGHTLTVKVV-SSKPVQVNKPRGAXXXXXXXXXXXXXXIAECLVGDDTGAI 74
           KV  LKP      +TV+V+ +S+  Q+    G               I+E +VGD+TG +
Sbjct: 4   KVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRT------------ISEAIVGDETGRV 51

Query: 75  YFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRL 108
             T        +  G  V + NA    FKG ++L
Sbjct: 52  KLTLWGKHAGSIKEGQVVKIENAWTTAFKGQVQL 85


>pdb|2KEN|A Chain A, Solution Nmr Structure Of The Ob Domain (Residues 67-166)
           Of Mm0293 From Methanosarcina Mazei. Northeast
           Structural Genomics Consortium Target Mar214a.
 pdb|2KBN|A Chain A, Solution Nmr Structure Of The Ob Domain (Residues 67-166)
           Of Mm0293 From Methanosarcina Mazei. Northeast
           Structural Genomics Consortium Target Mar214a
          Length = 109

 Score = 33.1 bits (74), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 66  LVGDDTGAIYFT-ARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE-VTEPAD 123
           L+GD+TG I FT  +N ++ ++  G + +LR+  +  +    ++ V+K   IE ++EP +
Sbjct: 40  LLGDETGIIKFTIWKNAELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEPIE 99


>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom
           Thrombin- Like Enzyme From Agkistrodon Halys
          Length = 238

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 113 WGRIEVTEPADFEVKESNNLSLVEYELV 140
           WGRI  TE    +V    N++L+EYE+ 
Sbjct: 125 WGRISPTEGTYPDVPHCVNINLLEYEMC 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,573,409
Number of Sequences: 62578
Number of extensions: 113122
Number of successful extensions: 225
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 7
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)