BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032330
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440 OS=Arabidopsis thaliana
GN=At4g28440 PE=1 SV=1
Length = 153
Score = 202 bits (513), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/137 (71%), Positives = 112/137 (81%), Gaps = 1/137 (0%)
Query: 6 ATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAEC 65
+T KRKPVF+KV+QLKPGTTGHTLTVKV+ + V V R R SSLS+PS+P RI EC
Sbjct: 14 STVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIV-VPVTRKTRPASSLSRPSQPSRIVEC 72
Query: 66 LVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFE 125
L+GD+TG I FTARNDQVD+M PG TVILRN++IDMFKG+MRL VDKWGRIE T A F
Sbjct: 73 LIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFT 132
Query: 126 VKESNNLSLVEYELVNV 142
VKE NNLSLVEYEL+NV
Sbjct: 133 VKEDNNLSLVEYELINV 149
>sp|Q8N118|CP4X1_HUMAN Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2 SV=1
Length = 509
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 44 PRGARSLSSLSQPSR-------PPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRN 96
P A++L S + P PP + + L D G +F R ++TPG +
Sbjct: 96 PDYAKTLLSRTDPKSQYLQKFSPPLLGKGLAALD-GPKWFQHRR----LLTPGFHFNILK 150
Query: 97 AKIDMFKGSMRLAVDKWGRIEVTEPADFEVKES-NNLSL 134
A I++ S+++ +DKW +I T+ EV E N++SL
Sbjct: 151 AYIEVMAHSVKMMLDKWEKICSTQDTSVEVYEHINSMSL 189
>sp|Q66K94|SOSB1_XENTR SOSS complex subunit B1 OS=Xenopus tropicalis GN=nabp2 PE=2 SV=1
Length = 203
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 65 CLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE 117
C V D TG+I + +D + + PG + L +FKG + L + G ++
Sbjct: 41 CKVADKTGSINISVWDDLGNFIQPGDIIRLTKGYASLFKGCLTLYTGRGGDLQ 93
>sp|Q8R2Y9|SOSB1_MOUSE SOSS complex subunit B1 OS=Mus musculus GN=Nabp2 PE=2 SV=1
Length = 212
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 65 CLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE 117
C V D TG+I + +D +++ PG + L +FKG + L + G ++
Sbjct: 41 CKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQ 93
>sp|Q3SWT1|SOSB1_RAT SOSS complex subunit B1 OS=Rattus norvegicus GN=Nabp2 PE=2 SV=1
Length = 211
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 65 CLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE 117
C V D TG+I + +D +++ PG + L +FKG + L + G ++
Sbjct: 41 CKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQ 93
>sp|A6QLK2|SOSB1_BOVIN SOSS complex subunit B1 OS=Bos taurus GN=NABP2 PE=2 SV=1
Length = 211
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 65 CLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE 117
C V D TG+I + +D +++ PG + L +FKG + L + G ++
Sbjct: 41 CKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQ 93
>sp|Q9BQ15|SOSB1_HUMAN SOSS complex subunit B1 OS=Homo sapiens GN=NABP2 PE=1 SV=1
Length = 211
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 65 CLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE 117
C V D TG+I + +D +++ PG + L +FKG + L + G ++
Sbjct: 41 CKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQ 93
>sp|Q6DE02|SOB1A_XENLA SOSS complex subunit B1-A OS=Xenopus laevis GN=nabp2-a PE=2 SV=1
Length = 203
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 65 CLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE 117
C V D TG+I + ++ + + PG + L +FKG + L + G ++
Sbjct: 41 CKVADKTGSINISVWDELGNFIQPGDIIRLSKGYASLFKGCLTLYTGRGGDLQ 93
>sp|B2TRN5|FOLD_CLOBB Bifunctional protein FolD OS=Clostridium botulinum (strain Eklund
17B / Type B) GN=folD PE=3 SV=1
Length = 282
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 58 RPPRIAECLVGDDTGAIYFTARNDQV 83
R P+IA LVG+D G+IY+ + ++V
Sbjct: 31 RIPKIASILVGNDGGSIYYMSSQEKV 56
>sp|B2V4R7|FOLD_CLOBA Bifunctional protein FolD OS=Clostridium botulinum (strain Alaska
E43 / Type E3) GN=folD PE=3 SV=1
Length = 282
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 58 RPPRIAECLVGDDTGAIYFTARNDQV 83
R P+IA LVG+D G+IY+ + ++V
Sbjct: 31 RIPKIASILVGNDGGSIYYMSSQEKV 56
>sp|Q6NRF9|SOB1B_XENLA SOSS complex subunit B1-B OS=Xenopus laevis GN=nabp2-b PE=2 SV=1
Length = 203
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 65 CLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE 117
C V D TG I + ++ + + PG + L +FKG + L + G ++
Sbjct: 41 CKVADKTGTINISVWDEVGNFIQPGDIIRLTKGYASLFKGCLTLYTGRGGDLQ 93
>sp|C6Y4C0|YFMR_SCHPO Putative splicing factor C222.18 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC222.18 PE=2 SV=1
Length = 111
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 88 PGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKESNNLSLVEYE 138
PG T+ +RN DM ++ A +KWGRI + +++ + VE+E
Sbjct: 16 PGHTLYIRNFGTDMRARTLGQAFEKWGRIVRCDIPISSNPQAHRYAFVEFE 66
>sp|A5D7P8|SOSB2_BOVIN SOSS complex subunit B2 OS=Bos taurus GN=NABP1 PE=2 SV=1
Length = 206
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 12 PVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDT 71
P+FIK +KPG L V + + +V K + + S C V D T
Sbjct: 8 PLFIK--DIKPGL--KNLNVVFIVLEIGRVTKTKDGHEVRS------------CKVADKT 51
Query: 72 GAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE 117
G+I + ++ ++ PG + L M+KG + L + G ++
Sbjct: 52 GSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQ 97
>sp|Q96AH0|SOSB2_HUMAN SOSS complex subunit B2 OS=Homo sapiens GN=NABP1 PE=1 SV=1
Length = 204
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 62 IAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIE 117
+ C V D TG+I + ++ ++ PG + L M+KG + L + G ++
Sbjct: 42 VRSCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQ 97
>sp|Q5I0B4|LST8_XENTR Target of rapamycin complex subunit lst8 OS=Xenopus tropicalis
GN=mlst8 PE=2 SV=1
Length = 326
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 60 PRIAECLVGDDTGAIY-FTARNDQVDIMTPGTTVILRNAKID 100
P AE +VGD +GAI+ + + DQ + + P T V + + ID
Sbjct: 138 PNQAELIVGDQSGAIHIWDLKTDQNEQLIPETDVSINSVHID 179
>sp|Q6PA72|LST8_XENLA Target of rapamycin complex subunit lst8 OS=Xenopus laevis GN=mlst8
PE=2 SV=1
Length = 326
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 60 PRIAECLVGDDTGAIY-FTARNDQVDIMTPGTTVILRNAKID 100
P AE +VGD +GAI+ + + DQ + + P T V + + ID
Sbjct: 138 PNQAELIVGDQSGAIHIWDLKTDQNEQLIPETDVSINSVHID 179
>sp|Q54X41|SOSSB_DICDI SOSS complex subunit B homolog OS=Dictyostelium discoideum
GN=DDB_G0279223 PE=3 SV=1
Length = 183
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 62 IAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEP 121
I + LV D T +I T + + + PG + L+ +++ + L V K G IE
Sbjct: 36 IYQVLVADSTASINMTVWDALGEQIQPGDILRLKGGYSNIYIELLNLYVGKTGIIEKIGE 95
Query: 122 ADFEVKESNNLS 133
F E+ NLS
Sbjct: 96 FTFPFVEAPNLS 107
>sp|O32879|FOLD_MYCLE Bifunctional protein FolD OS=Mycobacterium leprae (strain TN)
GN=folD PE=3 SV=1
Length = 282
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 50 LSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDM 101
+++L++ R P + LVGDD G+ + R D G T I R+ +D+
Sbjct: 23 VAALTESGRTPGLGTILVGDDPGSHAY-VRGKHADCAKVGITSIRRDLPVDI 73
>sp|B8ZUV4|FOLD_MYCLB Bifunctional protein FolD OS=Mycobacterium leprae (strain Br4923)
GN=folD PE=3 SV=1
Length = 282
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 50 LSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDM 101
+++L++ R P + LVGDD G+ + R D G T I R+ +D+
Sbjct: 23 VAALTESGRTPGLGTILVGDDPGSHAY-VRGKHADCAKVGITSIRRDLPVDI 73
>sp|C1AHH2|FOLD_MYCBT Bifunctional protein FolD OS=Mycobacterium bovis (strain BCG /
Tokyo 172 / ATCC 35737 / TMC 1019) GN=folD PE=3 SV=1
Length = 281
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 43 KPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMF 102
KPR +++L R P + LVGDD G+ + R D G T I R+ D+
Sbjct: 20 KPR----VAALDAAGRTPGLGTILVGDDPGSQAYV-RGKHADCAKVGITSIRRDLPADIS 74
Query: 103 KGSMRLAVDKW 113
++ +D+
Sbjct: 75 TATLNETIDEL 85
>sp|A1KP49|FOLD_MYCBP Bifunctional protein FolD OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=folD PE=3 SV=1
Length = 281
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 43 KPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMF 102
KPR +++L R P + LVGDD G+ + R D G T I R+ D+
Sbjct: 20 KPR----VAALDAAGRTPGLGTILVGDDPGSQAYV-RGKHADCAKVGITSIRRDLPADIS 74
Query: 103 KGSMRLAVDKW 113
++ +D+
Sbjct: 75 TATLNETIDEL 85
>sp|Q7TWN0|FOLD_MYCBO Bifunctional protein FolD OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=folD PE=3 SV=1
Length = 281
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 43 KPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMF 102
KPR +++L R P + LVGDD G+ + R D G T I R+ D+
Sbjct: 20 KPR----VAALDAAGRTPGLGTILVGDDPGSQAYV-RGKHADCAKVGITSIRRDLPADIS 74
Query: 103 KGSMRLAVDKW 113
++ +D+
Sbjct: 75 TATLNETIDEL 85
>sp|P27649|HUPD_RHILV Hydrogenase expression/formation protein HupD OS=Rhizobium
leguminosarum bv. viciae GN=hupD PE=3 SV=2
Length = 202
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 81 DQVDI-MTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKESNNLSLVEYEL 139
D +D + PGT ++ + ++ F G+ ++++ + G EV ADF L+L+ +
Sbjct: 74 DAIDYGLEPGTMKVVEDDEVPKFTGAKKMSLHQTGFQEVLSAADFMGHYPERLTLIGCQP 133
Query: 140 VNVE 143
+++E
Sbjct: 134 LDLE 137
>sp|Q73UA5|FOLD_MYCPA Bifunctional protein FolD OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=folD PE=3 SV=1
Length = 281
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 50 LSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLA 109
+++L+ R P + LVGDD G+ + R D G T I R+ D+ ++
Sbjct: 23 VAALTAAGRTPGLGTILVGDDPGSQAYV-RGKHADCAKVGITSIRRDLPADISTAALNDT 81
Query: 110 VDKW 113
+D+
Sbjct: 82 IDEL 85
>sp|A0QKM1|FOLD_MYCA1 Bifunctional protein FolD OS=Mycobacterium avium (strain 104)
GN=folD PE=3 SV=1
Length = 281
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 50 LSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLA 109
+++L+ R P + LVGDD G+ + R D G T I R+ D+ ++
Sbjct: 23 VAALTAAGRTPGLGTILVGDDPGSQAYV-RGKHADCAKVGITSIRRDLPADISTAALNDT 81
Query: 110 VDKW 113
+D+
Sbjct: 82 IDEL 85
>sp|A1B2Q2|RBL_PARDP Ribulose bisphosphate carboxylase large chain OS=Paracoccus
denitrificans (strain Pd 1222) GN=cbbL PE=3 SV=1
Length = 487
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 78 ARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEV----TEPADF 124
ARN+ VD+ T G V+ R AK + + A+D WG I T+ +DF
Sbjct: 433 ARNEGVDLKTEGPEVLRRAAK---WCKPLEAALDVWGNITFNYTSTDTSDF 480
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,277,119
Number of Sequences: 539616
Number of extensions: 1867523
Number of successful extensions: 4882
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4863
Number of HSP's gapped (non-prelim): 38
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)