Query 032330
Match_columns 143
No_of_seqs 106 out of 404
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 20:43:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjj_A Hypothetical protein F2 100.0 2.7E-41 9.1E-46 254.9 10.4 135 3-143 5-144 (145)
2 2k75_A Uncharacterized protein 99.9 7.9E-26 2.7E-30 161.6 10.3 96 13-123 2-97 (106)
3 2kbn_A Conserved protein; nucl 99.9 2.2E-24 7.4E-29 154.7 12.3 101 12-129 3-104 (109)
4 1o7i_A SSB, SSO2364, single st 99.9 6.2E-23 2.1E-27 148.5 13.8 104 14-128 2-105 (119)
5 3e0e_A Replication protein A; 99.9 1.4E-23 4.7E-28 147.5 9.4 93 15-119 3-96 (97)
6 3dm3_A Replication factor A; p 99.9 1.5E-21 5.3E-26 139.3 9.1 97 12-120 3-101 (105)
7 2k50_A Replication factor A re 99.7 1.2E-16 4E-21 114.0 11.3 99 12-121 5-107 (115)
8 1ynx_A Replication factor-A pr 99.5 4.3E-14 1.5E-18 101.3 9.4 98 13-121 3-111 (114)
9 1jmc_A Protein (replication pr 99.5 3.7E-13 1.3E-17 106.3 10.6 99 12-121 6-115 (246)
10 4gop_C Putative uncharacterize 99.2 7.1E-11 2.4E-15 101.0 10.9 97 14-121 3-110 (444)
11 1jmc_A Protein (replication pr 99.0 4.1E-10 1.4E-14 88.8 6.6 102 9-120 121-227 (246)
12 4gop_C Putative uncharacterize 99.0 1.9E-09 6.5E-14 92.1 9.7 102 10-121 117-227 (444)
13 1xjv_A Protection of telomeres 97.7 0.00033 1.1E-08 56.8 10.1 87 10-112 2-94 (294)
14 4gop_B Putative uncharacterize 97.5 0.0008 2.7E-08 48.7 9.7 73 24-120 36-115 (136)
15 3kdf_D Replication protein A 3 97.4 0.0013 4.5E-08 47.3 9.3 74 24-121 31-111 (132)
16 1qzg_A Protection of telomeres 97.2 0.0024 8.2E-08 49.5 9.2 91 11-113 26-128 (187)
17 1xjv_A Protection of telomeres 97.1 0.00033 1.1E-08 56.8 4.0 96 13-112 144-262 (294)
18 2pi2_A Replication protein A 3 97.1 0.0037 1.3E-07 50.2 9.5 86 12-121 46-151 (270)
19 1jb7_A Telomere-binding protei 96.8 0.0059 2E-07 53.3 9.7 91 9-113 33-141 (495)
20 4hik_A Protection of telomeres 96.8 0.0016 5.6E-08 48.3 5.2 93 12-113 3-111 (143)
21 3kf6_A Protein STN1; OB fold, 95.2 0.078 2.7E-06 39.7 7.5 70 25-115 48-125 (159)
22 3m4p_A Ehasnrs, asparaginyl-tR 92.5 0.88 3E-05 39.1 9.9 100 1-119 6-122 (456)
23 1jb7_A Telomere-binding protei 91.2 0.93 3.2E-05 39.4 8.7 87 11-117 208-297 (495)
24 3f2b_A DNA-directed DNA polyme 90.0 0.99 3.4E-05 42.7 8.3 86 12-112 5-97 (1041)
25 1txy_A Primosomal replication 88.1 1.5 5.2E-05 29.9 6.3 63 24-100 2-80 (104)
26 3rn5_A Interferon-inducible pr 86.4 2.2 7.4E-05 33.3 6.8 54 66-119 144-198 (208)
27 2v31_A Ubiquitin-activating en 84.9 1.8 6.3E-05 30.4 5.4 59 69-134 27-85 (112)
28 2xvs_A Tetratricopeptide repea 82.6 8.6 0.0003 28.9 8.5 77 8-102 57-136 (166)
29 2oq0_A Gamma-interferon-induci 81.9 6.7 0.00023 30.5 7.8 88 14-119 114-202 (206)
30 3au7_A TIAS, putative uncharac 79.3 5.9 0.0002 33.7 7.4 74 16-113 277-356 (402)
31 3en2_A Probable primosomal rep 79.1 13 0.00044 25.5 8.0 73 24-110 2-91 (101)
32 3nem_A Aspartyl-tRNA synthetas 79.0 8.7 0.0003 32.7 8.4 84 16-119 6-101 (438)
33 3koj_A Uncharacterized protein 77.2 3.9 0.00013 28.4 4.8 64 23-99 10-84 (108)
34 1n9w_A Aspartyl-tRNA synthetas 74.6 22 0.00075 29.9 9.6 81 16-119 4-88 (422)
35 1gm5_A RECG; helicase, replica 74.4 1.9 6.4E-05 39.3 3.1 69 14-99 156-228 (780)
36 3k8a_A Putative primosomal rep 74.2 18 0.00061 24.6 7.8 73 25-111 8-96 (103)
37 3rlo_A Gamma-interferon-induci 74.0 5.9 0.0002 30.8 5.4 54 66-119 140-195 (204)
38 2xgt_A Asparaginyl-tRNA synthe 73.4 13 0.00044 31.5 7.9 84 15-117 1-95 (435)
39 4gs3_A Single-stranded DNA-bin 73.2 15 0.0005 25.5 6.9 61 24-98 11-78 (107)
40 1z9f_A Single-strand binding p 71.8 6.3 0.00022 28.8 4.9 65 21-99 13-94 (153)
41 3vdy_A SSB, single-stranded DN 71.6 7.4 0.00025 26.6 5.1 63 23-99 4-81 (116)
42 3i7f_A Aspartyl-tRNA synthetas 70.7 21 0.00072 31.4 8.8 90 10-119 46-153 (548)
43 3fhw_A Primosomal replication 69.8 13 0.00045 26.0 6.1 74 24-111 1-91 (115)
44 1qvc_A Single stranded DNA bin 68.8 5.4 0.00019 28.7 4.0 63 23-99 4-84 (145)
45 1nnx_A Protein YGIW; structura 67.5 9.2 0.00031 26.7 4.8 72 16-111 27-102 (109)
46 3afp_A Single-stranded DNA-bin 65.6 10 0.00035 28.0 5.0 63 23-99 3-84 (168)
47 2vw9_A Single-stranded DNA bin 65.4 9.6 0.00033 27.0 4.7 62 24-99 2-80 (134)
48 1eov_A ASPRS, aspartyl-tRNA sy 64.6 52 0.0018 28.1 10.0 89 11-119 20-130 (487)
49 1wyd_A Hypothetical aspartyl-t 63.7 25 0.00087 29.6 7.7 84 16-119 6-98 (429)
50 1v1q_A Primosomal replication 63.1 21 0.00073 25.6 6.2 62 25-100 20-97 (134)
51 1l1o_C Replication protein A 7 63.0 2 6.8E-05 32.1 0.7 25 60-84 78-102 (181)
52 2hpi_A DNA polymerase III alph 61.6 4.6 0.00016 38.9 3.0 59 25-98 1043-1105(1220)
53 3u50_C Telomerase-associated p 59.9 2.1 7.2E-05 32.3 0.3 25 60-84 74-98 (172)
54 3bju_A Lysyl-tRNA synthetase; 59.9 39 0.0013 29.3 8.4 75 25-118 56-140 (521)
55 3ulp_A Single-strand binding p 59.2 9.2 0.00031 26.5 3.6 62 24-99 6-86 (124)
56 2vl6_A SSO MCM N-TER, minichro 57.8 12 0.00041 29.2 4.4 31 73-103 212-242 (268)
57 1e1o_A Lysyl-tRNA synthetase, 57.1 28 0.00097 30.0 7.0 59 60-118 80-147 (504)
58 1x54_A Asparaginyl-tRNA synthe 56.6 29 0.00098 29.3 6.8 84 16-119 6-101 (434)
59 3rn5_A Interferon-inducible pr 55.7 57 0.0019 25.3 7.7 76 29-120 15-92 (208)
60 2fxq_A Single-strand binding p 55.4 16 0.00055 28.5 4.8 63 23-99 127-202 (264)
61 3tqy_A Single-stranded DNA-bin 55.4 11 0.00037 27.6 3.6 63 23-99 7-87 (158)
62 3ull_A DNA binding protein; DN 55.2 14 0.00046 26.0 3.9 63 23-99 13-99 (132)
63 1l0w_A Aspartyl-tRNA synthetas 54.6 53 0.0018 28.8 8.4 67 60-126 32-110 (580)
64 1miu_A BRCA2, breast cancer ty 53.8 4.9 0.00017 36.8 1.6 49 72-120 525-581 (738)
65 3eiv_A Single-stranded DNA-bin 53.4 21 0.00073 27.3 5.0 62 24-99 4-84 (199)
66 1ltl_A DNA replication initiat 53.0 15 0.00051 28.9 4.3 31 73-103 199-229 (279)
67 4ex5_A Lysine--tRNA ligase; st 51.8 44 0.0015 29.2 7.3 60 60-119 102-169 (529)
68 3ebe_A Protein MCM10 homolog; 50.9 23 0.00079 27.1 4.9 96 11-120 35-146 (200)
69 1miu_A BRCA2, breast cancer ty 50.6 58 0.002 29.8 8.1 82 20-120 607-691 (738)
70 1se8_A Single-strand binding p 49.1 15 0.00053 29.5 3.8 66 23-102 128-210 (301)
71 1eqq_A Single stranded DNA bin 48.6 5.7 0.0002 29.7 1.1 29 71-99 53-85 (178)
72 3rlo_A Gamma-interferon-induci 47.7 95 0.0032 24.0 9.4 75 29-120 12-88 (204)
73 3e0j_A DNA polymerase subunit 46.7 41 0.0014 29.0 6.3 40 64-106 139-178 (476)
74 3u5c_c S33, YS27, 40S ribosoma 46.5 56 0.0019 21.0 5.4 37 58-97 21-59 (67)
75 3lgj_A Single-stranded DNA-bin 45.6 20 0.00068 26.5 3.7 84 23-120 22-133 (169)
76 4dam_A Single-stranded DNA-bin 45.5 23 0.00078 24.9 3.8 62 23-99 14-94 (128)
77 3u4v_A Telomerase-associated p 45.3 34 0.0012 23.4 4.5 81 16-110 17-103 (117)
78 3j20_X 30S ribosomal protein S 43.9 50 0.0017 21.4 4.9 36 59-97 21-60 (71)
79 2wkd_A ORF34P2; SSB, single-st 42.2 48 0.0016 23.3 4.9 65 27-104 4-72 (119)
80 2do3_A Transcription elongatio 40.0 60 0.0021 20.8 4.8 21 81-104 13-33 (69)
81 2fxq_A Single-strand binding p 39.7 34 0.0012 26.6 4.4 66 23-102 4-87 (264)
82 3k7u_C MP18 RNA editing comple 37.0 75 0.0026 22.9 5.6 64 23-102 5-88 (148)
83 3pgz_A Single-stranded DNA-bin 36.5 30 0.001 26.4 3.4 84 23-120 25-136 (193)
84 3a74_A Lysyl-tRNA synthetase; 36.3 40 0.0014 29.0 4.6 59 60-118 72-138 (493)
85 3cp0_A Membrane protein implic 34.4 21 0.00072 22.8 2.0 37 59-96 28-70 (82)
86 2k14_A YUAF protein; NFED-like 32.9 13 0.00044 24.1 0.7 29 69-97 34-71 (84)
87 1c0a_A Aspartyl tRNA synthetas 32.0 59 0.002 28.5 5.0 60 60-119 31-105 (585)
88 1qp2_A Protein (PSAE protein); 29.4 43 0.0015 21.7 2.8 56 85-140 1-61 (70)
89 2k52_A Uncharacterized protein 27.3 61 0.0021 20.2 3.3 28 84-111 44-71 (80)
90 4a1k_A Putative L, D-transpept 27.0 7.1 0.00024 28.6 -1.5 26 70-95 137-164 (165)
91 3k81_C MP18 RNA editing comple 26.5 77 0.0026 23.5 4.1 67 17-99 15-100 (164)
92 2oq0_A Gamma-interferon-induci 25.1 2.4E+02 0.0081 21.8 8.4 77 29-120 18-96 (206)
93 3tur_A Mycobacteria tuberculos 22.7 13 0.00045 29.9 -0.8 28 70-97 230-259 (287)
94 1sr3_A APO-CCME; OB fold, beta 22.3 2.2E+02 0.0075 20.4 7.7 40 60-99 48-87 (136)
95 2zzd_A Thiocyanate hydrolase s 20.8 24 0.00082 25.3 0.3 37 83-119 34-70 (126)
96 3f9v_A Minichromosome maintena 20.6 67 0.0023 27.9 3.2 31 73-103 206-236 (595)
No 1
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=100.00 E-value=2.7e-41 Score=254.95 Aligned_cols=135 Identities=67% Similarity=1.042 Sum_probs=122.1
Q ss_pred ccCCCcCCCCceeeeccCCCCCCCceEEEEEEecCcce--eccCCCccccCCCCCC---CCCCeeEEEEEeeCcceEEEE
Q 032330 3 TAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQ--VNKPRGARSLSSLSQP---SRPPRIAECLVGDDTGAIYFT 77 (143)
Q Consensus 3 ~~~~~~~~~~~~~kI~dL~p~~~~v~i~~kVl~~~~~~--~~~~R~~~~~~~DG~~---~~~~~v~~~lVgDeTG~I~lt 77 (143)
+..++++++|.|+||+||+|++++++|++|||+++++. .+++| . ||+. .++++|++|+||||||+|+||
T Consensus 5 ~~~~~~~~kp~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R---~---dG~~~~~~r~~~V~~~lVgDeTG~I~ft 78 (145)
T 1wjj_A 5 SSGSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTR---P---ASSLSRPSQPSRIVECLIGDETGCILFT 78 (145)
T ss_dssp CCCCCCCCCCSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCS---C---SSCCSSCCCCCCCEEEEEECSSCEEEEE
T ss_pred CCCCccccCccceEHHHcCCCCCceEEEEEEEEcccccccccccc---c---CCccccccCCceEEEEEEEcCCcEEEEE
Confidence 34577999999999999999999999999999999742 03555 3 7741 237899999999999999999
Q ss_pred EecCCCCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEEcCCCceEEcCCCCccccceeeeecC
Q 032330 78 ARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKESNNLSLVEYELVNVE 143 (143)
Q Consensus 78 lW~~~~~~i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~~~~~~~~v~e~~n~S~~eye~v~~~ 143 (143)
+|+++++.+++||+|+|+|||+++|+|+|+|++++||+|+++++++|+||+++|||++|||+++++
T Consensus 79 lW~e~~~~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e~~~~v~e~~n~S~~e~e~~~~~ 144 (145)
T 1wjj_A 79 ARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYESGPSS 144 (145)
T ss_dssp ECTTHHHHTCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSCCCSCCCTTSBTTTSCCSSCCSC
T ss_pred EecCCcCcCCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCCCcEEEecCCCcCcceEEEeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999875
No 2
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=99.93 E-value=7.9e-26 Score=161.58 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=87.0
Q ss_pred ceeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCCCCCCCCCEE
Q 032330 13 VFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTV 92 (143)
Q Consensus 13 ~~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~~~i~~Gd~v 92 (143)
.++||+||+|++.+++++++|++++++. . .| || +++++++++|||+||+|+|++|+++ +++||+|
T Consensus 2 ~~~kI~dl~pg~~~v~v~~~V~~~~~~~-~-~k-------~G---~~~~v~~~~l~DeTG~I~~tlW~~~---l~~Gdvv 66 (106)
T 2k75_A 2 DLVKIRDVSLSTPYVSVIGKITGIHKKE-Y-ES-------DG---TTKSVYQGYIEDDTARIRISSFGKQ---LQDSDVV 66 (106)
T ss_dssp CBCCSTTCCTTCSEEEEEEEEEEEEEEE-E-EE-------TT---EEEEEEEEEEECSSCEEEEEEESSC---CCTTEEE
T ss_pred CcEEHHHcCCCCceEEEEEEEEEccccc-c-cc-------CC---CeeEEEEEEEEcCCCeEEEEEEcCc---cCCCCEE
Confidence 5789999999999999999999999865 2 33 66 3568999999999999999999988 9999999
Q ss_pred EEeceEEceeCCeEEEEeCCceeEEEcCCCc
Q 032330 93 ILRNAKIDMFKGSMRLAVDKWGRIEVTEPAD 123 (143)
Q Consensus 93 ~I~na~~~~~~g~~~L~ig~~g~I~~~~~~~ 123 (143)
+|+||++++|+|+++|+++++|+|+++++++
T Consensus 67 ~i~ng~v~~~~g~~~L~v~~~~~I~~~~~~~ 97 (106)
T 2k75_A 67 RIDNARVAQFNGYLSLSVGDSSRIESVNVNI 97 (106)
T ss_dssp EEEEEEEEEETTEEEEEECTTSEEEECCSCC
T ss_pred EEEeeEEeEECCEEEEEECCcEEEEECCCCC
Confidence 9999999999999999999999999997553
No 3
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=99.92 E-value=2.2e-24 Score=154.66 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=88.7
Q ss_pred CceeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEec-CCCCCCCCCC
Q 032330 12 PVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARN-DQVDIMTPGT 90 (143)
Q Consensus 12 ~~~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~-~~~~~i~~Gd 90 (143)
+.+.||+||+|+..+++++++|++++++ | .| .....++|||+||+|+|++|+ ++++.+++|+
T Consensus 3 ~~~~kI~dl~~~~~~v~v~~~V~~~~~~-----~-------~~-----~~~~~~~l~DeTG~I~~t~W~~~~~~~~~~G~ 65 (109)
T 2kbn_A 3 PQLTKIVDIVENGQWANLKAKVIQLWEN-----T-------HE-----SISQVGLLGDETGIIKFTIWKNAELPLLEQGE 65 (109)
T ss_dssp CCBCCTTTCCSTTCEEEEEEEEEEEEEC-----C-------CS-----SEEEEEEEECTTCCEEEEEEGGGCCCCCCTTC
T ss_pred CCceEHHHCCCCCCcEEEEEEEEEeEcC-----C-------CC-----eEEEEEEEECCCCeEEEEEECcccccccCCCC
Confidence 5678999999999999999999999852 2 22 346679999999999999999 7888899999
Q ss_pred EEEEeceEEceeCCeEEEEeCCceeEEEcCCCceEEcCC
Q 032330 91 TVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKES 129 (143)
Q Consensus 91 ~v~I~na~~~~~~g~~~L~ig~~g~I~~~~~~~~~v~e~ 129 (143)
+|+|+||++++|+|+++|+++++|.|+..+++++.+.+.
T Consensus 66 ~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~~~~~~~~ 104 (109)
T 2kbn_A 66 SYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEPIEVGLEH 104 (109)
T ss_dssp EEEEEEEEEEEETTEEEEEECSSSEEEECSSCCCCCCSS
T ss_pred EEEEEEEEEEEECCEEEEEECCceEEEECCCcccccccc
Confidence 999999999999999999999999999998776655554
No 4
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.90 E-value=6.2e-23 Score=148.47 Aligned_cols=104 Identities=25% Similarity=0.359 Sum_probs=91.6
Q ss_pred eeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCCCCCCCCCEEE
Q 032330 14 FIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVI 93 (143)
Q Consensus 14 ~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~~~i~~Gd~v~ 93 (143)
|.+|+||+|++.++++.++|+++++......| +| . +.+++++|+|+||+|++++|+++++.+++|++|+
T Consensus 2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k-------~G---~-~~~~~~~l~D~TG~I~~tlW~~~~~~~~~G~vv~ 70 (119)
T 1o7i_A 2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTK-------NG---V-RTISEAIVGDETGRVKLTLWGKHAGSIKEGQVVK 70 (119)
T ss_dssp BCCGGGCCTTCSSEEEEEEEEEECCCEEECCT-------TC---C-EEEEEEEEEETTEEEEEEEEGGGTTCCCTTCEEE
T ss_pred cEEHHHCcCCCCcEEEEEEEEECCCCeeEEec-------CC---C-EEEEEEEEEeCCCEEEEEEECChhhcCCCCCEEE
Confidence 67899999999999999999999973312333 55 2 6899999999999999999999988899999999
Q ss_pred EeceEEceeCCeEEEEeCCceeEEEcCCCceEEcC
Q 032330 94 LRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKE 128 (143)
Q Consensus 94 I~na~~~~~~g~~~L~ig~~g~I~~~~~~~~~v~e 128 (143)
|+||++++|+|+++|+++++|.|+..++++|..-+
T Consensus 71 i~~g~v~~~~g~~qL~i~~~~~i~~~~~~~~~~~~ 105 (119)
T 1o7i_A 71 IENAWTTAFKGQVQLNAGSKTKIAEASEDGFPESS 105 (119)
T ss_dssp EEEEEEEEETTEEEEEECTTCEEEECCCTTCCCGG
T ss_pred EEeEEEEEeCCEEEEEECCCEEEEEcCCcCCCcHH
Confidence 99999999999999999999999999888875433
No 5
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.90 E-value=1.4e-23 Score=147.54 Aligned_cols=93 Identities=24% Similarity=0.341 Sum_probs=79.6
Q ss_pred eeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCCCC-CCCCCEEE
Q 032330 15 IKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDI-MTPGTTVI 93 (143)
Q Consensus 15 ~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~~~-i~~Gd~v~ 93 (143)
.||+||+|+ .+++++++|+++.++. ++.| . ||+ +++++++.|+|+||+|++|+|+++++. +++||+|+
T Consensus 3 ~kI~dl~~g-~~v~i~~~V~~~~~~r-~~~~---~---~G~---~~~v~~~~l~DeTG~I~~tlW~~~~~~~i~~Gdvv~ 71 (97)
T 3e0e_A 3 YKISELMPN-LSGTINAEVVTAYPKK-EFSR---K---DGT---KGQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAE 71 (97)
T ss_dssp ECGGGCCTT-EEEEEEEEEEEECCCE-EEC----------C---CEEEEEEEEEETTEEEEEEEEGGGGGCCCCTTCEEE
T ss_pred eEHHHCCCC-CcEEEEEEEEECCCce-EEEc---C---CCC---eeEEEEEEEECCCCcEEEEEECCccccccCCCCEEE
Confidence 589999999 7899999999999866 4444 2 773 689999999999999999999999985 99999999
Q ss_pred EeceEEceeCCeEEEEeCCceeEEEc
Q 032330 94 LRNAKIDMFKGSMRLAVDKWGRIEVT 119 (143)
Q Consensus 94 I~na~~~~~~g~~~L~ig~~g~I~~~ 119 (143)
| +|++++|.++++|++|++|.|++.
T Consensus 72 i-~g~v~~~~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 72 V-SGYVKQGYSGLEISVDNIGIIEKS 96 (97)
T ss_dssp E-EEEEEEC--CEEEEEEEEEEEECC
T ss_pred E-EEEEEEcCCeEEEEECCCcEEEEC
Confidence 9 999999999999999999999863
No 6
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=1.5e-21 Score=139.32 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=85.5
Q ss_pred CceeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCCC-CCCCCC
Q 032330 12 PVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVD-IMTPGT 90 (143)
Q Consensus 12 ~~~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~~-~i~~Gd 90 (143)
..+++|+||.|+ .++++.++|++++++. ++.| . || +++.++++.|+|+||+|++|||+++++ .+++||
T Consensus 3 ~~~~~I~dL~~~-~~v~v~g~V~~~~~~r-~~~~---~---~G---~~~~v~~~~l~D~TG~IrvtlW~~~a~~~l~~Gd 71 (105)
T 3dm3_A 3 KDTYNIGELSPG-MTATFEGEVISALPIK-EFKR---A---DG---SIGKLKSFIVRDETGSIRVTLWDNLTDIDVGRGD 71 (105)
T ss_dssp -CEECGGGCCSS-EEEEEEEEEEEEEEEE-EEEC---T---TS---CEEEEEEEEEEETTEEEEEEEEGGGGGSCCCTTC
T ss_pred ccceEHHHCCCC-CeEEEEEEEEECCCce-EEEc---C---CC---CeeEEEEEEEECCCCcEEEEEECcccccccCCCC
Confidence 368999999999 7899999999999865 3433 2 76 478999999999999999999999888 599999
Q ss_pred EEEEeceEEceeC-CeEEEEeCCceeEEEcC
Q 032330 91 TVILRNAKIDMFK-GSMRLAVDKWGRIEVTE 120 (143)
Q Consensus 91 ~v~I~na~~~~~~-g~~~L~ig~~g~I~~~~ 120 (143)
+|.| +||++++. |.++|++|+.|.|++.+
T Consensus 72 vv~i-~g~vk~~~~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 72 YVRV-RGYIREGYYGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEEE-EEEEEECTTSSEEEEEEEEEEEECCC
T ss_pred EEEE-EEEEEEccCCCEEEEeCCceEEEecc
Confidence 9999 99999984 69999999999999875
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.71 E-value=1.2e-16 Score=113.97 Aligned_cols=99 Identities=18% Similarity=0.330 Sum_probs=83.0
Q ss_pred CceeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCCC---CCCC
Q 032330 12 PVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVD---IMTP 88 (143)
Q Consensus 12 ~~~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~~---~i~~ 88 (143)
..+.+|++|.|+.. +++.++|+++++......| +| ++..++++.|+|+||.|++++|+++++ .+++
T Consensus 5 ~~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k-------~G---~~~~~~~~~l~D~TG~I~~t~w~~~~~~~~~l~~ 73 (115)
T 2k50_A 5 HRMDTISKLEEGAE-TPVTGRVMKISSPRTFTTR-------KG---REGKLANVIIADDTGELRAVFWTENIKLLKKFRE 73 (115)
T ss_dssp TCCCCTTTCCTTCE-EEEEEEEEEECCCEECCCT-------TS---SCCEEEEEEEEETTEEEEEEEETTGGGGGGTCCT
T ss_pred cceEEHHHCCCCCE-eEEEEEEEECCCceEEEcC-------CC---CEEEEEEEEEEeCCCeEEEEEeCchhhhhhcCCC
Confidence 45678999999876 6999999999764312233 44 346899999999999999999997654 6899
Q ss_pred CCEEEEeceEEce-eCCeEEEEeCCceeEEEcCC
Q 032330 89 GTTVILRNAKIDM-FKGSMRLAVDKWGRIEVTEP 121 (143)
Q Consensus 89 Gd~v~I~na~~~~-~~g~~~L~ig~~g~I~~~~~ 121 (143)
|++|.|.|++++. |+|.++|++++++.|+..++
T Consensus 74 G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 74 GDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp TSEEEEEEEEECCCSSSSCEEEECTTCCEEEESS
T ss_pred CCEEEEEeeEEccccCCeEEEEECCCceEEECCc
Confidence 9999999999987 99999999999999998864
No 8
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.3e-14 Score=101.33 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=83.6
Q ss_pred ceeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCCCC----CCC
Q 032330 13 VFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDI----MTP 88 (143)
Q Consensus 13 ~~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~~~----i~~ 88 (143)
.+.+|++|.|++.+.+|.|+|+.+++.. .+.+ . +| .+++.++.+.|++|.|+.++|+++++. |++
T Consensus 3 ~~~~Is~L~p~~~~w~I~~rV~~k~~~r-~~~~---~---~~----~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~e 71 (114)
T 1ynx_A 3 PIFAIEQLSPYQNVWTIKARVSYKGEIK-TWHN---Q---RG----DGKLFNVNFLDTSGEIRATAFNDFATKFNEILQE 71 (114)
T ss_dssp CBCCGGGCCTTTCCCEEEEEEEEEEEEE-EEEC---S---SC----EEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCS
T ss_pred ceEEHHHCCCCCCceEEEEEEEEeccce-EEec---C---CC----CceEEEEEEECCCCeEEEEECHHHHHHHHhhccc
Confidence 5778999999999999999999999854 2332 1 33 589999999999999999999987654 799
Q ss_pred CCEEEEeceEEcee-------CCeEEEEeCCceeEEEcCC
Q 032330 89 GTTVILRNAKIDMF-------KGSMRLAVDKWGRIEVTEP 121 (143)
Q Consensus 89 Gd~v~I~na~~~~~-------~g~~~L~ig~~g~I~~~~~ 121 (143)
|+++.|.++.++.- ....+|.+++++.|++.++
T Consensus 72 G~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 72 GKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp SSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred CcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 99999999999873 4578999999999999864
No 9
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=99.46 E-value=3.7e-13 Score=106.32 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=84.2
Q ss_pred CceeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCC----CCCC
Q 032330 12 PVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQV----DIMT 87 (143)
Q Consensus 12 ~~~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~----~~i~ 87 (143)
..+.+|++|.|++.+.+|.+||+.+++.. .+.+ . +| .+++.+++++|++|.|+.++|++++ +.++
T Consensus 6 ~~~~~I~~L~p~~~~w~I~~rV~~k~~~r-~~~~---~---~~----~g~~~~~~L~De~G~I~at~~~~~~~~~~~~l~ 74 (246)
T 1jmc_A 6 SKVVPIASLTPYQSKWTICARVTNKSQIR-TWSN---S---RG----EGKLFSLELVDESGEIRATAFNEQVDKFFPLIE 74 (246)
T ss_dssp -CBCCGGGCCTTCCCCEEEEEEEEECCCE-EEEC---S---SC----EEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCC
T ss_pred cceEEHHHCCCCCCceEEEEEEEEecccc-eeeC---C---CC----CceEEEEEEECCCCeEEEEEChHHHHHhhhhcc
Confidence 46889999999999999999999999844 2332 1 33 5789999999999999999999765 4589
Q ss_pred CCCEEEEeceEEcee-------CCeEEEEeCCceeEEEcCC
Q 032330 88 PGTTVILRNAKIDMF-------KGSMRLAVDKWGRIEVTEP 121 (143)
Q Consensus 88 ~Gd~v~I~na~~~~~-------~g~~~L~ig~~g~I~~~~~ 121 (143)
+|+++.|.|+.++.. .+.++|.++.++.|++.++
T Consensus 75 ~G~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~ 115 (246)
T 1jmc_A 75 VNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCED 115 (246)
T ss_dssp TTCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCS
T ss_pred cCCEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEccC
Confidence 999999999999875 5789999999999999754
No 10
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.21 E-value=7.1e-11 Score=101.01 Aligned_cols=97 Identities=18% Similarity=0.282 Sum_probs=82.6
Q ss_pred eeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCC----CCCCCC
Q 032330 14 FIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQV----DIMTPG 89 (143)
Q Consensus 14 ~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~----~~i~~G 89 (143)
+.+|++|.|++.+..|.++|+.+++.. .+.+ . +| .+++.++.++|++|.|+.++|++++ +.|++|
T Consensus 3 ~~~I~~L~p~~~~w~I~~rV~~k~~ir-~~~~---~---~~----~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG 71 (444)
T 4gop_C 3 IYPIEGLSPYQNRWTIKARVTSKSDIR-HWSN---Q---RG----EGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQEN 71 (444)
T ss_dssp CCCSTTCCTTCCSCEEEEECCEECCCE-EEEC---S---SC----EEEEEEEEEECSSCEEEEEEETHHHHHHTTTCCTT
T ss_pred ceeHHHCCCCCcceEEEEEEEEccCcc-eecC---C---CC----CceEEEEEEEcCCCEEEEEEeHHHHHHHHHheecC
Confidence 678999999999999999999999855 3333 1 33 4789999999999999999999754 568999
Q ss_pred CEEEEeceEEceeC-------CeEEEEeCCceeEEEcCC
Q 032330 90 TTVILRNAKIDMFK-------GSMRLAVDKWGRIEVTEP 121 (143)
Q Consensus 90 d~v~I~na~~~~~~-------g~~~L~ig~~g~I~~~~~ 121 (143)
+++.|.|+.++..+ ...+|.++.++.|++.++
T Consensus 72 ~vy~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d 110 (444)
T 4gop_C 72 HVYLISKARVNIAKKQFSNLQNEYEITFENSTEIEECTD 110 (444)
T ss_dssp CEEEEESCEEEECCGGGCSCCCSEEEEECTTCEEEECSC
T ss_pred CEEEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEccC
Confidence 99999999998764 468999999999999864
No 11
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=99.02 E-value=4.1e-10 Score=88.78 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=80.0
Q ss_pred CCCCceeeeccCCC--CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcc-eEEEEEecCCCCC
Q 032330 9 KRKPVFIKVDQLKP--GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTG-AIYFTARNDQVDI 85 (143)
Q Consensus 9 ~~~~~~~kI~dL~p--~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG-~I~ltlW~~~~~~ 85 (143)
.....|++|++|.. ....++|.|.|+++++......| . +| .....++..|.|+|| +|+++||++++..
T Consensus 121 ~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k---~---~g---~~~~~r~~~l~D~sg~~i~~tLWg~~a~~ 191 (246)
T 1jmc_A 121 TVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVR---S---NN---REVAKRNIYLMDTSGKVVTATLWGEDADK 191 (246)
T ss_dssp CCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEET---T---TT---EEEEEEEEEEECTTCCEEEEEEEHHHHHH
T ss_pred cceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEe---c---CC---CccEEEEEEEECCCCCEEEEEEEchhhhh
Confidence 34456889999974 23458999999999985522222 1 44 357899999999999 5999999987764
Q ss_pred --CCCCCEEEEeceEEceeCCeEEEEeCCceeEEEcC
Q 032330 86 --MTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTE 120 (143)
Q Consensus 86 --i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~~~ 120 (143)
..+|++|.|++++++.| |.++|+++..++|...|
T Consensus 192 ~~~~~~~vv~i~~~~v~~f-~g~~ls~~~~s~i~inp 227 (246)
T 1jmc_A 192 FDGSRQPVLAIKGARVSDF-GGRSLSVLSSSTIIANP 227 (246)
T ss_dssp CCCTTCCEEEEEEEEEECT-TSSEEECCSSCEEESSC
T ss_pred cccCCCCEEEEEEEEEEec-CCeEEEecCcceEEECC
Confidence 47899999999999999 55899999999997443
No 12
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.98 E-value=1.9e-09 Score=92.13 Aligned_cols=102 Identities=13% Similarity=0.182 Sum_probs=82.3
Q ss_pred CCCceeeeccCCC--CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcc-eEEEEEecCCCCC-
Q 032330 10 RKPVFIKVDQLKP--GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTG-AIYFTARNDQVDI- 85 (143)
Q Consensus 10 ~~~~~~kI~dL~p--~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG-~I~ltlW~~~~~~- 85 (143)
..-.|++|.||.. ....++|.|.|+++++......| . +| .....++..|.|+|| +|++|||+++++.
T Consensus 117 ~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k---~---~g---~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f 187 (444)
T 4gop_C 117 VKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSK---A---SQ---RPVQKRELTLVDQGNRSVKLTLWGKTAETF 187 (444)
T ss_dssp CCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCT---T---TC---SCEEEEEEEEECTTCBEEEEEEEHHHHHTS
T ss_pred eeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEc---c---CC---ceeeEEEEEEEeCCCCEEEEEEEhhhhhhh
Confidence 3456889999985 34568999999999985522232 1 45 468899999999999 9999999987754
Q ss_pred -----CCCCCEEEEeceEEceeCCeEEEEeCCceeEEEcCC
Q 032330 86 -----MTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEP 121 (143)
Q Consensus 86 -----i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~~~~ 121 (143)
...|++|.|.+++++.|+|. .|+++..++|...|+
T Consensus 188 ~~~~~~~~~~VV~i~~~kV~~f~G~-~ls~~~~s~i~inPd 227 (444)
T 4gop_C 188 PTNAGVDEKPVLAFKGVKVGDFGGR-SLSMFSSSTMLINPD 227 (444)
T ss_dssp TTSTTSSSCCEEEEESCEEECTTSS-EEECCTTCEEEESCS
T ss_pred hhhhccCCCCEEEEEeEEEeecCCe-EEeccccceEEECCC
Confidence 45799999999999999996 999999999987754
No 13
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=97.66 E-value=0.00033 Score=56.84 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=67.9
Q ss_pred CCCceeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeC--cceEEEEEecC---CCC
Q 032330 10 RKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDD--TGAIYFTARND---QVD 84 (143)
Q Consensus 10 ~~~~~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDe--TG~I~ltlW~~---~~~ 84 (143)
.+..|++|++|+. ...+|+.|.|++..++. . .| | +..++...|.|+ .| +++.+|.+ ...
T Consensus 2 ~~y~y~~l~~l~~-~~~vnvigVV~~~~~p~-~-s~--------G----~d~~~tl~I~D~S~~g-l~v~iF~~~~~~LP 65 (294)
T 1xjv_A 2 TNYIYTPLNQLKG-GTIVNVYGVVKFFKPPY-L-SK--------G----TDYCSVVTIVDQTNVK-LTCLLFSGNYEALP 65 (294)
T ss_dssp CCCCCCCGGGCCS-SEEEEEEEEEEEEEEEE-E-CS--------S----SSEEEEEEEECTTCCE-EEEEEEESSGGGSC
T ss_pred CcceEEEHHHhhC-CCeeEEEEEEEEcCCCc-c-CC--------C----CeEEEEEEEEcCCCCC-EEEEEECCChHHCC
Confidence 3567899999986 44589999999998654 2 23 2 357999999994 55 88888864 344
Q ss_pred CC-CCCCEEEEeceEEceeCCeEEEEeCC
Q 032330 85 IM-TPGTTVILRNAKIDMFKGSMRLAVDK 112 (143)
Q Consensus 85 ~i-~~Gd~v~I~na~~~~~~g~~~L~ig~ 112 (143)
.+ ++||+|+|++..++.|+|.+.+..+.
T Consensus 66 ~v~~~GDII~l~~vki~~~~g~~~~v~~~ 94 (294)
T 1xjv_A 66 IIYKNGDIVRFHRLKIQVYKKETQGITSS 94 (294)
T ss_dssp CCCSTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEEEECCeEEEEccC
Confidence 45 89999999999999999999886543
No 14
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=97.53 E-value=0.0008 Score=48.73 Aligned_cols=73 Identities=14% Similarity=0.060 Sum_probs=56.6
Q ss_pred CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCC-------CCCCCCCCEEEEec
Q 032330 24 TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQ-------VDIMTPGTTVILRN 96 (143)
Q Consensus 24 ~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~-------~~~i~~Gd~v~I~n 96 (143)
-..|.+.|+|.++... ..-....|.|.||.|....|.+. ...+++|+.|++.+
T Consensus 36 i~~V~iVG~V~~~~~~--------------------~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G 95 (136)
T 4gop_B 36 LGQLTFVAVVRNISRN--------------------ATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLG 95 (136)
T ss_dssp CCEEEEEEEEEEEEEC--------------------SSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEE
T ss_pred EEEEEEEEEEEEEEec--------------------CCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEE
Confidence 4567999999998631 12566779999999999999742 45689999999998
Q ss_pred eEEceeCCeEEEEeCCceeEEEcC
Q 032330 97 AKIDMFKGSMRLAVDKWGRIEVTE 120 (143)
Q Consensus 97 a~~~~~~g~~~L~ig~~g~I~~~~ 120 (143)
.. +.|+|..+|.+. .|.++.
T Consensus 96 ~v-~~f~g~~qi~~~---~ir~v~ 115 (136)
T 4gop_B 96 TL-KSFQNRRSISSG---HMRPVI 115 (136)
T ss_dssp EE-EEETTEEEEEES---EEEECS
T ss_pred EE-EEeCCEEEEEEE---EEEECC
Confidence 74 789999999875 455554
No 15
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=97.38 E-value=0.0013 Score=47.32 Aligned_cols=74 Identities=16% Similarity=0.151 Sum_probs=56.0
Q ss_pred CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcc-eEEEEEecCC------CCCCCCCCEEEEec
Q 032330 24 TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTG-AIYFTARNDQ------VDIMTPGTTVILRN 96 (143)
Q Consensus 24 ~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG-~I~ltlW~~~------~~~i~~Gd~v~I~n 96 (143)
-..|.+.|+|.++.+. ..-....|.|.|| +|....|.+. ...+++|+.|++.+
T Consensus 31 i~~V~iVG~V~~~~~~--------------------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G 90 (132)
T 3kdf_D 31 ISQVTIVGIIRHAEKA--------------------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG 90 (132)
T ss_dssp CCEEEEEEEEEEEEEC--------------------SSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEE
T ss_pred EEEEEEEEEEEEEEEc--------------------CCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEE
Confidence 3568899999998631 1256778999999 9999999743 35689999999998
Q ss_pred eEEceeCCeEEEEeCCceeEEEcCC
Q 032330 97 AKIDMFKGSMRLAVDKWGRIEVTEP 121 (143)
Q Consensus 97 a~~~~~~g~~~L~ig~~g~I~~~~~ 121 (143)
. ++.|+|..+|.+. .|.++.+
T Consensus 91 ~-l~~f~g~~qi~~~---~ir~v~d 111 (132)
T 3kdf_D 91 H-LRSFQNKKSLVAF---KIMPLED 111 (132)
T ss_dssp E-EEEETTEEEEEEE---EEEECSS
T ss_pred E-EEeECCEEEEEEE---EEEEcCC
Confidence 7 5789999999864 5666644
No 16
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=97.18 E-value=0.0024 Score=49.47 Aligned_cols=91 Identities=11% Similarity=0.145 Sum_probs=64.8
Q ss_pred CCceeeeccCC---CCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCc---c--eEEEEEecC-
Q 032330 11 KPVFIKVDQLK---PGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDT---G--AIYFTARND- 81 (143)
Q Consensus 11 ~~~~~kI~dL~---p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeT---G--~I~ltlW~~- 81 (143)
...|..+++.. ....-||+.+.|++..++. .+.|| ....++...|.|++ . .+.+.++.+
T Consensus 26 ~~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~-~S~rG-----------tkD~~~TltI~D~S~~~~~~gL~v~iF~~~ 93 (187)
T 1qzg_A 26 ELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSR-QSLHG-----------TKDWVTTVYLWDPTCDTSSIGLQIHLFSKQ 93 (187)
T ss_dssp TEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEE-ECSST-----------TCCEEEEEEEECTTSCTTSCCEEEEEEESS
T ss_pred ceeEEEHHHHHhhccCCCEEEEEEEEEEccCce-ecCCC-----------CccEEEEEEEEeCCCCCCCCceEEEEECCC
Confidence 34555555533 2234589999999999765 33242 12579999999987 1 477777753
Q ss_pred --CCCCC-CCCCEEEEeceEEceeCCeEEEEeCCc
Q 032330 82 --QVDIM-TPGTTVILRNAKIDMFKGSMRLAVDKW 113 (143)
Q Consensus 82 --~~~~i-~~Gd~v~I~na~~~~~~g~~~L~ig~~ 113 (143)
....+ .+||+|++++..++.|+|.+.+...+.
T Consensus 94 ~e~LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 94 GNDLPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp SSCSCCCCSTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred hhhCCCCCCCCCEEEEEEEEEEEECCeEEEEEcCc
Confidence 34445 789999999999999999999865554
No 17
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=97.12 E-value=0.00033 Score=56.82 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=62.0
Q ss_pred ceeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEE-----EEEee-------CcceEEEEEec
Q 032330 13 VFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAE-----CLVGD-------DTGAIYFTARN 80 (143)
Q Consensus 13 ~~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~-----~lVgD-------eTG~I~ltlW~ 80 (143)
.|..|+||+++ ..++|+|+|+.+.... ..+ ..--..|||.-....... ..-|| ...++.+++|+
T Consensus 144 ~~~~L~di~~~-~f~DLv~qVv~v~~~~--~~~-~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d 219 (294)
T 1xjv_A 144 TLLKLCDVQPM-QYFDLTCQLLGKAEVD--GAS-FLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYD 219 (294)
T ss_dssp CCCCGGGCCSS-CEEEEEEEEEEEEECS--SSE-EEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEET
T ss_pred ceeEHHHcccC-CeeeEEEEEEEEEecC--CCe-EEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEc
Confidence 57799999998 5699999999875321 000 000012666311111110 12233 34579999999
Q ss_pred CCC---CCCCCCCEEEEeceEEcee--------CCeEEEEeCC
Q 032330 81 DQV---DIMTPGTTVILRNAKIDMF--------KGSMRLAVDK 112 (143)
Q Consensus 81 ~~~---~~i~~Gd~v~I~na~~~~~--------~g~~~L~ig~ 112 (143)
+++ ..+++||.|+|+|..+++. .++|+..+..
T Consensus 220 ~h~~~~~~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~ 262 (294)
T 1xjv_A 220 NHVHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHG 262 (294)
T ss_dssp THHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECS
T ss_pred chhHHHhcCCCCcEEEEeeeEEEecccccccCCCcceEEEEec
Confidence 764 4589999999999999998 5677777665
No 18
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=97.05 E-value=0.0037 Score=50.17 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=61.4
Q ss_pred CceeeeccCCCCC-------------CCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcc-eEEEE
Q 032330 12 PVFIKVDQLKPGT-------------TGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTG-AIYFT 77 (143)
Q Consensus 12 ~~~~kI~dL~p~~-------------~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG-~I~lt 77 (143)
...+.|++|.... ..|.+.++|.++.. + .......|.|.|| +|...
T Consensus 46 l~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~------~--------------~~~~~~~L~D~TG~~I~~k 105 (270)
T 2pi2_A 46 IVPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK------A--------------PTNIVYKIDDMTAAPMDVR 105 (270)
T ss_dssp CEECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEE------C--------------SSEEEEEEECSSSSCEEEE
T ss_pred eEEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEe------c--------------cceEEEEEECCCCCEEEEE
Confidence 4556667666542 24677777777642 1 2366788999999 89999
Q ss_pred EecCC------CCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEEcCC
Q 032330 78 ARNDQ------VDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEP 121 (143)
Q Consensus 78 lW~~~------~~~i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~~~~ 121 (143)
+|.+. ...+++|+.|+|.+ .++.|+|.++|.+. +|.++.+
T Consensus 106 ~W~~~~~~~~~~~~~~~G~yVrV~G-~v~~f~g~~qi~i~---~ir~v~d 151 (270)
T 2pi2_A 106 QWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNKKSLVAF---KIMPLED 151 (270)
T ss_dssp EECC-------CCCCCTTCEEEEEE-EEEEETTEEEEEEE---EEEECSC
T ss_pred EEcCcCcccchhhcCCCCCEEEEEE-EEEecCCeeEEEEE---EEEecCC
Confidence 99643 34589999999986 56789999999876 4655543
No 19
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=96.85 E-value=0.0059 Score=53.33 Aligned_cols=91 Identities=10% Similarity=0.169 Sum_probs=65.5
Q ss_pred CCCCceeeeccCC-CCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcce--------E-----
Q 032330 9 KRKPVFIKVDQLK-PGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGA--------I----- 74 (143)
Q Consensus 9 ~~~~~~~kI~dL~-p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~--------I----- 74 (143)
..+..|+.|+++. .....+||.|.|++..++. . .| | +..++...|-|++=. +
T Consensus 33 ~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~-~-T~--------G----~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~ 98 (495)
T 1jb7_A 33 GHKYEYVELAKASLTSAQPQHFYAVVIDATFPY-K-TN--------Q----ERYICSLKIVDPTLYLKQQKGAGDASDYA 98 (495)
T ss_dssp ---CCBCCTTTSCSSCCSCEEEEEEEEEECCCE-E-CS--------S----SCEEEEEEEEBTTBSBCCTTSSCSCBCCE
T ss_pred cCCCccEEHHHHHhccCCeEEEEEEEeecCCce-e-cC--------C----CeEEEEEEEEeCCCCcccccccccccCce
Confidence 4457899999885 2355689999999999755 2 22 2 357999999995322 3
Q ss_pred EEEEecC---CCCCC-CCCCEEEEeceEEceeCCeEEEEeCCc
Q 032330 75 YFTARND---QVDIM-TPGTTVILRNAKIDMFKGSMRLAVDKW 113 (143)
Q Consensus 75 ~ltlW~~---~~~~i-~~Gd~v~I~na~~~~~~g~~~L~ig~~ 113 (143)
.+.++.+ ....+ .+||+|+|++..++.|+|.+.+..+..
T Consensus 99 ~v~iF~~~~e~LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~ 141 (495)
T 1jb7_A 99 TLVLYAKRFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANVF 141 (495)
T ss_dssp EEEEEESSGGGSCCCCEETCEEEEEEEEEEEETTEEEEEEETT
T ss_pred EEEEECCChHHCCCCCCCCCEEEEEEEEEEEECCcEEEEecCC
Confidence 6666653 44446 589999999999999999999766543
No 20
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=96.82 E-value=0.0016 Score=48.34 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=59.5
Q ss_pred CceeeeccCCCCCCCceEEEEEEecCcc--eeccCCCccccCCCCCCCCCCeeEEEEE-eeCc------c--eEEEEEec
Q 032330 12 PVFIKVDQLKPGTTGHTLTVKVVSSKPV--QVNKPRGARSLSSLSQPSRPPRIAECLV-GDDT------G--AIYFTARN 80 (143)
Q Consensus 12 ~~~~kI~dL~p~~~~v~i~~kVl~~~~~--~~~~~R~~~~~~~DG~~~~~~~v~~~lV-gDeT------G--~I~ltlW~ 80 (143)
.+|.-|+|+.|+. -++++|.|+.+... .+... .+|+|. ........+ +|++ | ++.++||+
T Consensus 3 ~kf~llkdv~~~~-F~Dl~~qVv~~~~~~~~~~Ly------VTDYT~--N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd 73 (143)
T 4hik_A 3 DSFSLLSQITPHQ-RCSFYAQVIKTWYSDKNFTLY------VTDYTE--NELFFPMSPYTSSSRWRGPFGRFSIRCILWD 73 (143)
T ss_dssp -CCCCGGGCCSSC-EEEEEEEEEEEEECSSCEEEE------EECSCC--CTTSCCBCTTCTTCSCCCCCBSCCEEEEECH
T ss_pred chhhhHHhCCCCC-eEEEEEEEEEEEcCCCeEEEE------EecCCC--CCcccccccCCCCccccCCCCcEEEEEEEEC
Confidence 3566789999854 58999999987632 10000 125552 222222211 1211 3 89999999
Q ss_pred CCC----CCCCCCCEEEEeceEEceeC-CeEEEEeCCc
Q 032330 81 DQV----DIMTPGTTVILRNAKIDMFK-GSMRLAVDKW 113 (143)
Q Consensus 81 ~~~----~~i~~Gd~v~I~na~~~~~~-g~~~L~ig~~ 113 (143)
+++ +.+++||.|+|+|..+++.+ |.|+-.+...
T Consensus 74 ~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~d 111 (143)
T 4hik_A 74 EHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGD 111 (143)
T ss_dssp HHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCC
T ss_pred cHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCC
Confidence 754 45889999999999999885 5677766433
No 21
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=95.16 E-value=0.078 Score=39.71 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=51.7
Q ss_pred CCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcc-eEEEEEecCC-C------CCCCCCCEEEEec
Q 032330 25 TGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTG-AIYFTARNDQ-V------DIMTPGTTVILRN 96 (143)
Q Consensus 25 ~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG-~I~ltlW~~~-~------~~i~~Gd~v~I~n 96 (143)
+.|.|.|+|+++.+. . .-....|-|.|| +|...+|-+. . ..+.+|+.++++|
T Consensus 48 ~~V~IvGiVv~~~~~----~----------------~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G 107 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIY----E----------------GKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG 107 (159)
T ss_dssp CEEEEEEEEEEEEEE----T----------------TEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEEEEEEEEEe----C----------------CEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEE
Confidence 457899999998732 1 124456899999 5999999654 1 2368999999997
Q ss_pred eEEceeCCeEEEEeCCcee
Q 032330 97 AKIDMFKGSMRLAVDKWGR 115 (143)
Q Consensus 97 a~~~~~~g~~~L~ig~~g~ 115 (143)
.. +.|+|..+|.+.+.-.
T Consensus 108 ~v-~~fr~~rqI~~~~i~~ 125 (159)
T 3kf6_A 108 KI-NSFRSEVELIAQSFEE 125 (159)
T ss_dssp EE-ECSSSSCEEEEEEEEE
T ss_pred EE-EeeCCEEEEEEEEEEE
Confidence 66 7789988987665433
No 22
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=92.46 E-value=0.88 Score=39.06 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=61.5
Q ss_pred CCccCCCcCCCCceeeeccCCCC-CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEe
Q 032330 1 MATAGATAKRKPVFIKVDQLKPG-TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTAR 79 (143)
Q Consensus 1 ~~~~~~~~~~~~~~~kI~dL~p~-~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW 79 (143)
|..|.-+.+..++.++|+||... ...|.|.|.|-++ | . .| +.++=+.|-|.+|.|.+.+-
T Consensus 6 ~~~~~~~~~~~~~~~~i~~~~~~~g~~V~v~Gwv~~~--------R---~---~G-----k~~~Fi~LrD~sg~iQvv~~ 66 (456)
T 3m4p_A 6 MTEATTTPVETPIVCNIRDAAGLEGKLVTFKGWAYHI--------R---K---AR-----KTLIFVELRDGSGYCQCVIF 66 (456)
T ss_dssp ----------CCCCEECCSTTCCCSSEEEEEEEEEEE--------E---C---CS-----SSEEEEEEECSSCEEEEEEE
T ss_pred cchhcccCCCcceEEEhhhhhhcCCCEEEEEEEEEEE--------e---c---CC-----CceEEEEEEeCCccEEEEEe
Confidence 45566778888899999999543 2346666766553 2 1 22 24777889999999998876
Q ss_pred cCC------CCCCCCCCEEEEeceEEceeC----------CeEEEEeCCceeEEEc
Q 032330 80 NDQ------VDIMTPGTTVILRNAKIDMFK----------GSMRLAVDKWGRIEVT 119 (143)
Q Consensus 80 ~~~------~~~i~~Gd~v~I~na~~~~~~----------g~~~L~ig~~g~I~~~ 119 (143)
.+. +..+..|++|.|++-.++... |.++|.+.+.--+.+.
T Consensus 67 ~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a 122 (456)
T 3m4p_A 67 GKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES 122 (456)
T ss_dssp STTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC
T ss_pred cccchhhHHhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecC
Confidence 522 235789999999988775433 6788887765444433
No 23
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=91.25 E-value=0.93 Score=39.44 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=65.1
Q ss_pred CCceeeec-cCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEec-CCCCCCCC
Q 032330 11 KPVFIKVD-QLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARN-DQVDIMTP 88 (143)
Q Consensus 11 ~~~~~kI~-dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~-~~~~~i~~ 88 (143)
...|..|+ |++++. .++|+|+||.+... |+ .-....|-|.||.-.++++- .....+++
T Consensus 208 ~~~f~~L~~di~~~~-f~DLv~qVv~~~~~-------------d~------~~~~L~VwDgT~~~~~~~~~~~~fP~~~~ 267 (495)
T 1jb7_A 208 SDMYTALNKAQAQKG-DFDVVAKILQVHEL-------------DE------YTNELKLKDASGQVFYTLSLKLKFPHVRT 267 (495)
T ss_dssp GGGSCCGGGGGGCSS-CEEEEEEEEEEEEC-------------SS------SEEEEEEEETTCCEEEEEEETTTCTTCCT
T ss_pred ccchhhhhhhhccCC-ceeEEEEEeEEecc-------------CC------CeEEEEEEeCCCCCcceeeccccCCceee
Confidence 34567888 999976 48999999998742 11 24678899999999998775 34455788
Q ss_pred CCEEEEeceEEceeCC-eEEEEeCCceeEE
Q 032330 89 GTTVILRNAKIDMFKG-SMRLAVDKWGRIE 117 (143)
Q Consensus 89 Gd~v~I~na~~~~~~g-~~~L~ig~~g~I~ 117 (143)
|++++|.+....+.-. ...+..+.|-.|.
T Consensus 268 G~Vlri~~~~~de~~~~l~~~~~~~w~ni~ 297 (495)
T 1jb7_A 268 GEVVRIRSATYDETSTQKKVLILSHYSNII 297 (495)
T ss_dssp TCEEEEEEEEECTTCCSSCEEEEEEEEEEE
T ss_pred EEEEEEecCccchhhhhhhhhcccccccee
Confidence 9999999998875433 4567777786665
No 24
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=89.99 E-value=0.99 Score=42.73 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=64.8
Q ss_pred CceeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCC------CCC
Q 032330 12 PVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQ------VDI 85 (143)
Q Consensus 12 ~~~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~------~~~ 85 (143)
...++|.+|.....+|.|.+.|.++..+. . | .| ..+...-|-|-|++|.+..|-.. .+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~--~-~-------~~-----~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~ 69 (1041)
T 3f2b_A 5 EPVRRLETIVEEERRVVVQGYVFDAEVSE--L-K-------SG-----RTLLTMKITDYTNSILVKMFSRDKEDAELMSG 69 (1041)
T ss_dssp --CBCGGGCCSCEEEEEEEEEEEEEEEEE--C-T-------TS-----CEEEEEEEECSSCEEEEEEECSSHHHHHHHHT
T ss_pred cCcccHHHhhcccceEEEEEEEEEEEEEE--c-c-------CC-----CEEEEEEEEeCCCCEEEEEeecccchHHHHhc
Confidence 45678999999999999999999977544 3 3 23 36889999999999999888422 346
Q ss_pred CCCCCEEEEeceE-EceeCCeEEEEeCC
Q 032330 86 MTPGTTVILRNAK-IDMFKGSMRLAVDK 112 (143)
Q Consensus 86 i~~Gd~v~I~na~-~~~~~g~~~L~ig~ 112 (143)
+++|+.|++++-. .+.|.+.+.+.+..
T Consensus 70 ~~~g~~~~~~g~~~~d~~~~~~~~~~~~ 97 (1041)
T 3f2b_A 70 VKKGMWVKVRGSVQNDTFVRDLVIIAND 97 (1041)
T ss_dssp CCTTCEEEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCEEEEEEEEEeccCCcceEEEeee
Confidence 8999999998654 35566766666653
No 25
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=88.14 E-value=1.5 Score=29.85 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=45.2
Q ss_pred CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe-----eCcce-------EEEEEecCCCCC----CC
Q 032330 24 TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG-----DDTGA-------IYFTARNDQVDI----MT 87 (143)
Q Consensus 24 ~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg-----DeTG~-------I~ltlW~~~~~~----i~ 87 (143)
++.+.|.+.+..-.+.. .++ .| ..|++..|| ++++- +++++|+.+++. ++
T Consensus 2 ~N~v~L~G~l~~dpelR-~t~--------~G-----~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~ 67 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRK-VSP--------SG-----IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSIT 67 (104)
T ss_dssp CEEEEEEEEEEEEEEEE-ECT--------TS-----CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCC
T ss_pred cEEEEEEEEECCCceEE-ECC--------CC-----CEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCC
Confidence 45678999988766544 233 44 357777775 45777 999999976543 68
Q ss_pred CCCEEEEeceEEc
Q 032330 88 PGTTVILRNAKID 100 (143)
Q Consensus 88 ~Gd~v~I~na~~~ 100 (143)
.|+.|.|.+-...
T Consensus 68 KG~~V~V~G~L~~ 80 (104)
T 1txy_A 68 VGSRITVQGFISC 80 (104)
T ss_dssp TTCEEEEEEEEEC
T ss_pred CCCEEEEEEEEEe
Confidence 9999999987654
No 26
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=86.42 E-value=2.2 Score=33.28 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=46.0
Q ss_pred EEeeCcceEEEEEecCCCCC-CCCCCEEEEeceEEceeCCeEEEEeCCceeEEEc
Q 032330 66 LVGDDTGAIYFTARNDQVDI-MTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVT 119 (143)
Q Consensus 66 lVgDeTG~I~ltlW~~~~~~-i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~~ 119 (143)
-|-|+||.+.+...+...+. .++||-++|.=-..+...+.+.|..+..+-|+..
T Consensus 144 eI~DnTG~MeVvv~G~~~~i~CEeGDKLrL~cFeL~~~~~~~qL~s~~HSfikVi 198 (208)
T 3rn5_A 144 DLSDNTGKMEVLGVRNEDTMKCKEGDKVRLTFFTLSKNGEKLQLTSGVHSTIKVI 198 (208)
T ss_dssp EEEETTEEEEEEEECSTGGGSCCTTCEEEEEEEEEEECSSSEEEECCTTCEEEEE
T ss_pred EEecCCCcEEEEEeccCcccccCCCCeeEEEEEEEeccCCeeeEEEecceeEEEE
Confidence 37899999999888876555 4899999999888888889999999999977654
No 27
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=84.90 E-value=1.8 Score=30.43 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=42.6
Q ss_pred eCcceEEEEEecCCCCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEEcCCCceEEcCCCCccc
Q 032330 69 DDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKESNNLSL 134 (143)
Q Consensus 69 DeTG~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~~~~~~~~v~e~~n~S~ 134 (143)
|+.|.|.+ -++..-.++.||.|++... +|-.+||=..-=+|+..+++.|++.+...+|.
T Consensus 27 ~~~g~Vt~--~~~~~H~l~dGD~V~FseV-----~GM~eLN~~~p~~i~v~~p~tf~I~dts~f~~ 85 (112)
T 2v31_A 27 DNPGVVTC--LDEARHGFETGDFVSFSEV-----QGMIQLNGCQPMEIKVLGPYTFSICDTSNFSD 85 (112)
T ss_dssp SSSEEEEE--CTTCCCCCCTTCEEEECSE-----ESCCTTGGGCCEEEEECSSSEEEESCCTTSCC
T ss_pred CCCcEEEE--ecCCccCCcCCCEEEEEee-----EcchhhCCCcceEEEEcCCCEEEEeccccccc
Confidence 67886554 6666667999999998765 34445554444468888899999988887775
No 28
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=82.63 E-value=8.6 Score=28.88 Aligned_cols=77 Identities=19% Similarity=0.138 Sum_probs=54.8
Q ss_pred cCCCCceeeeccCCCC-CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcc-eEEEEEecC-CCC
Q 032330 8 AKRKPVFIKVDQLKPG-TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTG-AIYFTARND-QVD 84 (143)
Q Consensus 8 ~~~~~~~~kI~dL~p~-~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG-~I~ltlW~~-~~~ 84 (143)
++.+-+...+++|+|| .+++-+.+||+-.-.. +. ..=...++.|..| ++-+|+.+- +--
T Consensus 57 ~~~~l~~~~l~~L~~G~N~g~vv~gKVv~~i~~-------------e~-----~vP~~f~~vD~~g~c~avsVYNl~~~~ 118 (166)
T 2xvs_A 57 QKVTLELKPLSTLQPGVNSGAVILGKVVFSLTT-------------EE-----KVPFTFGLVDSDGPCYAVMVYNIVQSW 118 (166)
T ss_dssp CEECCEECCGGGCCSEECTTEEEEEEEEEEECC-------------TT-----CCSEEEEEESSSSCCEEEEECCCCSSC
T ss_pred CcceeeeeeHHHcccccCCCcEEEEEEEEEecC-------------CC-----CCceEEEEECCCCCEEEEEEEeccCCc
Confidence 4556778899999998 6678899999875421 11 1223456667766 567888883 333
Q ss_pred CCCCCCEEEEeceEEcee
Q 032330 85 IMTPGTTVILRNAKIDMF 102 (143)
Q Consensus 85 ~i~~Gd~v~I~na~~~~~ 102 (143)
.+..||.|.|-..+++..
T Consensus 119 G~~iGDsV~IpeP~v~~v 136 (166)
T 2xvs_A 119 GVLIGDSVAIPEPNLRLH 136 (166)
T ss_dssp CCCTTCEEEEESCEEEEE
T ss_pred ceEecCEEEeCCCcEEEE
Confidence 389999999999998754
No 29
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=81.87 E-value=6.7 Score=30.52 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=60.6
Q ss_pred eeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCCCC-CCCCCEE
Q 032330 14 FIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDI-MTPGTTV 92 (143)
Q Consensus 14 ~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~~~-i~~Gd~v 92 (143)
..||.+|.-...+.-+. =+-.+.... . .+ .-.---|.|+||.+-+..-+.+.+. .++||.+
T Consensus 114 TpKI~~L~~qa~Gt~V~-GlF~v~kk~-v-~~---------------~~~~yeI~D~tG~MeVvv~G~~~~i~CeeGdkL 175 (206)
T 2oq0_A 114 TLKIDILHKQASGNIVY-GVFMLHKKT-V-NQ---------------KTTIYEIQDDRGKMDVVGTGQCHNIPCEEGDKL 175 (206)
T ss_dssp CCCHHHHTTSCTTCEEE-EEEEEEEEE-E-CS---------------SEEEEEEEETTEEEEEEEEGGGSSCCCCTTCEE
T ss_pred CccchhhhccCCccEEc-eEEEEEEEe-e-cc---------------ceEEEEEccCCCcEEEEEeCcccccccCCCCEE
Confidence 34788888777764333 333333222 1 11 1222348999999999877766554 4899999
Q ss_pred EEeceEEceeCCeEEEEeCCceeEEEc
Q 032330 93 ILRNAKIDMFKGSMRLAVDKWGRIEVT 119 (143)
Q Consensus 93 ~I~na~~~~~~g~~~L~ig~~g~I~~~ 119 (143)
++.--..+...+...|..+..+-|+..
T Consensus 176 rL~cF~L~~~~~~~~L~S~~hSfikvi 202 (206)
T 2oq0_A 176 QLFCFRLRKKNQMSKLISEMHSFIQIK 202 (206)
T ss_dssp EEEEEEEEEETTEEEEECCTTCEEEEC
T ss_pred EEEEEEeeccCCcceEEEecceeEEEE
Confidence 999988888889999999998877654
No 30
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=79.34 E-value=5.9 Score=33.65 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=51.7
Q ss_pred eeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecC---C---CCCCCCC
Q 032330 16 KVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARND---Q---VDIMTPG 89 (143)
Q Consensus 16 kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~---~---~~~i~~G 89 (143)
+|.++.|... +-+++.|.+..... + | +.| -..+.|++|+|++.+|.+ . +..+.+|
T Consensus 277 ~i~~~~~~~~-~~v~G~V~~~P~~~----~--------G-----GHV-~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~G 337 (402)
T 3au7_A 277 EVHRLENYRS-YRLRGRVTLEPYDI----E--------G-----GHV-FFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKG 337 (402)
T ss_dssp GCSSCCTTCE-EEEEEEEEEEEEEE----T--------T-----TEE-EEEEEETTEEEEEEECGGGTTHHHHHTTCCTT
T ss_pred cccccccCce-EEEEEEEecCcEec----c--------C-----ceE-EEEEEcCCCEEEEEEEccchHHHHHHhcCCCC
Confidence 4788887554 78999999875322 2 2 222 344678999999999983 2 3446899
Q ss_pred CEEEEeceEEceeCCeEEEEeCCc
Q 032330 90 TTVILRNAKIDMFKGSMRLAVDKW 113 (143)
Q Consensus 90 d~v~I~na~~~~~~g~~~L~ig~~ 113 (143)
|.|.+.++... | .|++-+.
T Consensus 338 D~V~v~G~v~~---g--tLnvEk~ 356 (402)
T 3au7_A 338 DVVEVYGSMKK---D--TINLEKI 356 (402)
T ss_dssp CEEEEEEEEET---T--EEEEEEE
T ss_pred CEEEEEEeecC---C--EEEEEEE
Confidence 99999999544 3 6666554
No 31
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=79.14 E-value=13 Score=25.47 Aligned_cols=73 Identities=15% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeC-----cc------e-EEEEEecCCC---CCCCC
Q 032330 24 TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDD-----TG------A-IYFTARNDQV---DIMTP 88 (143)
Q Consensus 24 ~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDe-----TG------~-I~ltlW~~~~---~~i~~ 88 (143)
|+.+.|.+++..-.+.. .++ .| ..|++..|+-+ .| . |++++|+.++ ..+..
T Consensus 2 MN~v~L~GrLt~dPelR-yTp--------sG-----~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~~~k 67 (101)
T 3en2_A 2 INRLQLVATLVEREVMR-YTP--------AG-----VPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIAP 67 (101)
T ss_dssp CCCEEEEEEEEEECCCE-ECT--------TC-----CEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTTSCT
T ss_pred cCEEEEEEEECcCccEE-ECC--------CC-----CEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhhcCC
Confidence 67889999999877654 222 55 35888777643 23 2 8889998544 34689
Q ss_pred CCEEEEeceEEce-eC-CeEEEEe
Q 032330 89 GTTVILRNAKIDM-FK-GSMRLAV 110 (143)
Q Consensus 89 Gd~v~I~na~~~~-~~-g~~~L~i 110 (143)
|+.|.|.+-.... |+ -.+.|.|
T Consensus 68 Gs~V~VeGrL~trs~~s~~lvlhi 91 (101)
T 3en2_A 68 GTVLECVGFLARKHRSSKALVFHI 91 (101)
T ss_dssp TCEEEEEEEEEECC----CEEEEE
T ss_pred CCEEEEEEEEEeCcCCCCeeEEEE
Confidence 9999999987633 33 3555554
No 32
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=79.03 E-value=8.7 Score=32.66 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=58.6
Q ss_pred eeccCCCC--CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCC--------CCC
Q 032330 16 KVDQLKPG--TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQ--------VDI 85 (143)
Q Consensus 16 kI~dL~p~--~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~--------~~~ 85 (143)
.+++|.+. .+.|.|.|.|-++-. . +.++=+.|-|.+|.|.+.+=.+. +..
T Consensus 6 ~~~~l~~~~~g~~V~v~Gwv~~~R~--------------~------g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~ 65 (438)
T 3nem_A 6 YSSEITEELNGQKVKVAGWVWEVKD--------------L------GGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPK 65 (438)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEEEE--------------E------TTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGG
T ss_pred EHHHcchhcCCCEEEEEEEEEEEec--------------C------CCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhc
Confidence 45666654 345677777765431 1 34778889999999998886543 345
Q ss_pred CCCCCEEEEeceEEceeC--CeEEEEeCCceeEEEc
Q 032330 86 MTPGTTVILRNAKIDMFK--GSMRLAVDKWGRIEVT 119 (143)
Q Consensus 86 i~~Gd~v~I~na~~~~~~--g~~~L~ig~~g~I~~~ 119 (143)
+..||+|.|.+-..+.-+ |.++|.+.+.--+.+.
T Consensus 66 l~~~~~V~V~G~v~~~~~~~~~~el~~~~i~vl~~~ 101 (438)
T 3nem_A 66 LRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRA 101 (438)
T ss_dssp CCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEECB
T ss_pred CCCCCEEEEEEEEEeCCCCCCcEEEEEEEEEEEecC
Confidence 889999999987776554 7899988776544444
No 33
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=77.17 E-value=3.9 Score=28.36 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=45.1
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe-------eCcceEEEEEecCCCCC----CCCCCE
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG-------DDTGAIYFTARNDQVDI----MTPGTT 91 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg-------DeTG~I~ltlW~~~~~~----i~~Gd~ 91 (143)
-|+.|.|.+++..-.+.. .++ +| ...|++..|| |+|--+++++|+.+++. ++.|+-
T Consensus 10 ~~~~v~LiGrL~~DPelR-~t~--------~g----~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~ 76 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLR-YAQ--------DN----QTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDE 76 (108)
T ss_dssp SCEEEEEEEEEEEEEEEE-ECT--------TS----SSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCE
T ss_pred ccceEEEEEEECCCCEEE-EeC--------CC----CEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCE
Confidence 466788999998866544 233 23 1368887776 35667999999976654 689999
Q ss_pred EEEeceEE
Q 032330 92 VILRNAKI 99 (143)
Q Consensus 92 v~I~na~~ 99 (143)
|.|.+-..
T Consensus 77 V~VeGrL~ 84 (108)
T 3koj_A 77 VVLEGRLR 84 (108)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99998643
No 34
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=74.60 E-value=22 Score=29.93 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=56.6
Q ss_pred eeccCC-CCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCCCCCC-CCCEEE
Q 032330 16 KVDQLK-PGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVDIMT-PGTTVI 93 (143)
Q Consensus 16 kI~dL~-p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~~~i~-~Gd~v~ 93 (143)
.+.+|. ...+.|.|.|.|.++-. . +.++=..+-|.+|.|.+.+-. ..+. .||+|.
T Consensus 4 ~~~~l~~~~~~~V~v~Gwv~~~R~--------------~------g~~~F~~lrD~~g~iQ~v~~~---~~l~~~~~~v~ 60 (422)
T 1n9w_A 4 LVRDLKAHVGQEVELLGFLHWRRD--------------L------GRIQFLLLRDRSGVVQVVTGG---LKLPLPESALR 60 (422)
T ss_dssp CGGGGGGCTTSEEEEEEEEEEEEE--------------C------SSEEEEEEEETTEEEEEEEES---CCCCCTTCEEE
T ss_pred EHHHHHhcCCCEEEEEEEEEEEec--------------C------CCeEEEEEEECCEEEEEEEEc---cccCCCCCEEE
Confidence 345554 12344777777766331 1 347888899999999998754 4588 999999
Q ss_pred EeceEEceeC--CeEEEEeCCceeEEEc
Q 032330 94 LRNAKIDMFK--GSMRLAVDKWGRIEVT 119 (143)
Q Consensus 94 I~na~~~~~~--g~~~L~ig~~g~I~~~ 119 (143)
|.+-..+.-. |.++|.+.+.--+.+.
T Consensus 61 v~G~v~~~~~~~~~~el~~~~~~vl~~~ 88 (422)
T 1n9w_A 61 VRGLVVENAKAPGGLEVQAKEVEVLSPA 88 (422)
T ss_dssp EEEEEEECTTSTTSEEEEEEEEEEEECC
T ss_pred EEEEEEecCCCCccEEEEEeEEEEeccC
Confidence 9998776654 4899998876555443
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=74.35 E-value=1.9 Score=39.32 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=50.4
Q ss_pred eeeeccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecC-C-CCCCCC--C
Q 032330 14 FIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARND-Q-VDIMTP--G 89 (143)
Q Consensus 14 ~~kI~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~-~-~~~i~~--G 89 (143)
..+|.++.++.. +.+.++|.+..... .+ ...+..+.+.|+||.+.++.++. . ...+++ |
T Consensus 156 ~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~--------------~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~~~~g 218 (780)
T 1gm5_A 156 IFKLNDLLPGEK-VTTQGKIVSVETKK--FQ--------------NMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTG 218 (780)
T ss_dssp CCCSSCCCSSCC-CEEEECCCCCEEEE--CS--------------SCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCS
T ss_pred CCcHHHcCCCCE-EEEEEEEEEEEeec--CC--------------CCeEEEEEEEECCceEEEEEECcHHHHhhCccCCC
Confidence 346788888764 78999998865322 11 13578899999999999998883 2 234678 9
Q ss_pred CEEEEeceEE
Q 032330 90 TTVILRNAKI 99 (143)
Q Consensus 90 d~v~I~na~~ 99 (143)
..+.+.+-..
T Consensus 219 ~~~~~~G~~~ 228 (780)
T 1gm5_A 219 KEVFVTGTVK 228 (780)
T ss_dssp SCEEEEEEEC
T ss_pred CEEEEEEEEE
Confidence 9999987653
No 36
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=74.21 E-value=18 Score=24.61 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=50.2
Q ss_pred CCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEee-----Ccc------e-EEEEEecCC--CCCCCCCC
Q 032330 25 TGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGD-----DTG------A-IYFTARNDQ--VDIMTPGT 90 (143)
Q Consensus 25 ~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgD-----eTG------~-I~ltlW~~~--~~~i~~Gd 90 (143)
+.|.|.+.+..-.+.+ .++ .| ..|++..||= ++| . +++++|+.+ +..++.|+
T Consensus 8 Nkv~LiG~L~~dPelR-ytp--------~G-----~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae~~~l~KG~ 73 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIR-YTP--------AG-----IPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEEWQYRQGD 73 (103)
T ss_dssp EEEEEEEEEEEECCCE-ECT--------TS-----CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHHHSTTCTTC
T ss_pred cEEEEEEEECCCCceE-ECC--------CC-----CEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhhhhccCCCC
Confidence 5688999998877654 233 45 3588887774 333 3 899999844 45578999
Q ss_pred EEEEeceEE-ceeCC-eEEEEeC
Q 032330 91 TVILRNAKI-DMFKG-SMRLAVD 111 (143)
Q Consensus 91 ~v~I~na~~-~~~~g-~~~L~ig 111 (143)
.|.|.+-.. +-|++ .+.|.+.
T Consensus 74 ~v~veGrL~~rs~~~~~lvlhi~ 96 (103)
T 3k8a_A 74 CATVEGFLAQKSRRSLMPMLRIQ 96 (103)
T ss_dssp EEEEEEEEEESSSSCCCEEEEEE
T ss_pred EEEEEEEEEECccCCccEEEEEE
Confidence 999999866 55554 5555543
No 37
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=74.05 E-value=5.9 Score=30.76 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=42.9
Q ss_pred EEeeCcceEEEEEecCCCCC-CCCCCEEEEeceEEcee-CCeEEEEeCCceeEEEc
Q 032330 66 LVGDDTGAIYFTARNDQVDI-MTPGTTVILRNAKIDMF-KGSMRLAVDKWGRIEVT 119 (143)
Q Consensus 66 lVgDeTG~I~ltlW~~~~~~-i~~Gd~v~I~na~~~~~-~g~~~L~ig~~g~I~~~ 119 (143)
-|-|+||.+.+...+...+. .++||-++|.=-..+.. .+.+.|..+..+-|+..
T Consensus 140 eI~DnTG~MeVvv~G~~~~i~CEeGDKLrL~cFeL~~~~~~~~qL~s~~HSfikVi 195 (204)
T 3rlo_A 140 EIQDNTGKMEVVVHGRLTTINCEEGDKLKLTCFELAPKSGNTGELRSVIHSHIKVI 195 (204)
T ss_dssp EEEETTEEEEEEECGGGGGCCCCTTCEEEEEEEEEECCTTTTCEEEEEEEEEEEEE
T ss_pred EEecCCCcEEEEEeccCcccccCCCCeeEEEEEEEecccCCceeEEEecceeEEEE
Confidence 37899999999888766555 58999999987777654 47889998888876654
No 38
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=73.42 E-value=13 Score=31.45 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=55.0
Q ss_pred eeeccCCCC-CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCCC-----CCCC
Q 032330 15 IKVDQLKPG-TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQVD-----IMTP 88 (143)
Q Consensus 15 ~kI~dL~p~-~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~~-----~i~~ 88 (143)
++|+|+... ...|.|.|.|.++-. .| +.++=+.|-|.+|.+.+.+-++..+ .+..
T Consensus 1 ~~i~~~~~~~~~~V~v~Gwv~~~R~--------------~G-----k~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~ 61 (435)
T 2xgt_A 1 VKIRDLVKHRNERVCIKGWIHRMRR--------------QG-----KSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNT 61 (435)
T ss_dssp CCGGGGGGGTTSEEEEEEEEEEEEE--------------CT-----TSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCT
T ss_pred CchhhhhhcCCCEEEEEEEEEEecc--------------cC-----CCcEEEEEEECCceEEEEECCcchhHHHHhcCCC
Confidence 367777642 334777787766431 22 2477788899999999887543211 3788
Q ss_pred CCEEEEeceEEc-----eeCCeEEEEeCCceeEE
Q 032330 89 GTTVILRNAKID-----MFKGSMRLAVDKWGRIE 117 (143)
Q Consensus 89 Gd~v~I~na~~~-----~~~g~~~L~ig~~g~I~ 117 (143)
||+|.+.+-..+ .-.|.++|.+.+.--+.
T Consensus 62 ~~~v~v~G~v~~~~~~~~~~g~~El~~~~~~vl~ 95 (435)
T 2xgt_A 62 ECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIG 95 (435)
T ss_dssp TCEEEEEEEEEECC------TTEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEecCCCcCCCCcEEEEEEEEEEee
Confidence 999999998765 33467888877664444
No 39
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=73.17 E-value=15 Score=25.47 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=45.2
Q ss_pred CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe-----eCcceEEEEEecCCCCCC--CCCCEEEEec
Q 032330 24 TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG-----DDTGAIYFTARNDQVDIM--TPGTTVILRN 96 (143)
Q Consensus 24 ~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg-----DeTG~I~ltlW~~~~~~i--~~Gd~v~I~n 96 (143)
.+.|.|.|++..-.+-. .+. .| ..++...|| |++--|++++|+.+++.+ ..|+.|.|.+
T Consensus 11 ~N~V~LiGrl~~dpelr-~t~--------~G-----~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~kG~~v~v~G 76 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFS-HEL--------YG-----EKFFNFILEVPRLSETKDYLPITISNRLFEGMNLEVGTRVKIEG 76 (107)
T ss_dssp CSCEEEEEEECSCCEEE-EEE--------TT-----EEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCCTTCEEEEEE
T ss_pred CCEEEEEEEECCCceEE-Eec--------CC-----cEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhcCCCEEEEEE
Confidence 35688999988765533 222 44 357777776 788899999999887765 4799999998
Q ss_pred eE
Q 032330 97 AK 98 (143)
Q Consensus 97 a~ 98 (143)
-.
T Consensus 77 ~l 78 (107)
T 4gs3_A 77 QL 78 (107)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 40
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=71.77 E-value=6.3 Score=28.79 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=43.8
Q ss_pred CCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe-eC------------cceEEEEEecCCCCC--
Q 032330 21 KPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG-DD------------TGAIYFTARNDQVDI-- 85 (143)
Q Consensus 21 ~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg-De------------TG~I~ltlW~~~~~~-- 85 (143)
.|.++.|.|.|++..-.+.. .++ .| ..++...|| +. |--+++++|+.+++.
T Consensus 13 ~~~~N~V~LiGrL~~DPelr-~t~--------~G-----~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~ 78 (153)
T 1z9f_A 13 MSFFNKIILIGRLVRDPEER-YTL--------SG-----TPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFAR 78 (153)
T ss_dssp CSCCCCEEEEEEESSCCEEE-ECC---------------CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHH
T ss_pred ccceeEEEEEEEECCCCEEE-ECC--------CC-----CEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHH
Confidence 46788899999987755443 222 34 356766665 21 345899999866543
Q ss_pred --CCCCCEEEEeceEE
Q 032330 86 --MTPGTTVILRNAKI 99 (143)
Q Consensus 86 --i~~Gd~v~I~na~~ 99 (143)
++.|+.|.|.+-..
T Consensus 79 ~~l~KG~~V~VeGrL~ 94 (153)
T 1z9f_A 79 TYLTKGRLVLVEGEMR 94 (153)
T ss_dssp HHCCTTCEEEEEEEEE
T ss_pred hhCCCCCEEEEEEEEE
Confidence 68999999998754
No 41
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=71.57 E-value=7.4 Score=26.62 Aligned_cols=63 Identities=8% Similarity=0.041 Sum_probs=42.3
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEee-----------CcceEEEEEecCCCC----CCC
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGD-----------DTGAIYFTARNDQVD----IMT 87 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgD-----------eTG~I~ltlW~~~~~----~i~ 87 (143)
.++.+.|.+++..-.+.. .++ .| ..++...|+= +|--+++++|+.+++ .++
T Consensus 4 mmN~v~l~G~l~~dpe~r-~t~--------~G-----~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~ 69 (116)
T 3vdy_A 4 MFNQVMLVGRLTKDPDLR-YTS--------AG-----AAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQ 69 (116)
T ss_dssp CCCCEEEEEEESSCCEEE-ECT--------TS-----CEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCC
T ss_pred eEeEEEEEEEEccCcEEE-ECC--------CC-----CEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCC
Confidence 467788888888755433 222 33 2466655542 234599999997654 368
Q ss_pred CCCEEEEeceEE
Q 032330 88 PGTTVILRNAKI 99 (143)
Q Consensus 88 ~Gd~v~I~na~~ 99 (143)
.|+.|.|.+-..
T Consensus 70 KG~~V~V~G~l~ 81 (116)
T 3vdy_A 70 KGSLVGVSGRIQ 81 (116)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCCEEEEEEEEE
Confidence 999999998765
No 42
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=70.72 E-value=21 Score=31.38 Aligned_cols=90 Identities=7% Similarity=0.081 Sum_probs=64.0
Q ss_pred CCCceeeeccCCCCC--CCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEec-CC----
Q 032330 10 RKPVFIKVDQLKPGT--TGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARN-DQ---- 82 (143)
Q Consensus 10 ~~~~~~kI~dL~p~~--~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~-~~---- 82 (143)
...++++|.+|.+.. +.|.|.|.|-.+ | + .+.++=+.|-|.+|.|.+.+-. +.
T Consensus 46 ~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~--------R-------~-----~gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~ 105 (548)
T 3i7f_A 46 TGLKYTEIEELVPAMAEKTVTIRARVQAV--------R-------G-----KGNMVFLFLRKGIYTCQALVMKSETISKE 105 (548)
T ss_dssp CCCCBCCGGGCSGGGTTCEEEEEEEEEEE--------E-------E-----CSSEEEEEEEETTEEEEEEEECSSSSCHH
T ss_pred CCCceEEhhhcchhcCCCEEEEEEEEEEE--------e-------c-----CCCeEEEEEEECCeeEEEEEECCCccCHH
Confidence 346788999998543 346667776553 2 1 2458888899999999988864 21
Q ss_pred ----CCCCCCCCEEEEeceEEcee-------CCeEEEEeCCceeEEEc
Q 032330 83 ----VDIMTPGTTVILRNAKIDMF-------KGSMRLAVDKWGRIEVT 119 (143)
Q Consensus 83 ----~~~i~~Gd~v~I~na~~~~~-------~g~~~L~ig~~g~I~~~ 119 (143)
+..+..|++|.|.+-..+.- .|.++|.+.+.--+.+.
T Consensus 106 ~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a 153 (548)
T 3i7f_A 106 FVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLA 153 (548)
T ss_dssp HHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECC
T ss_pred HHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecC
Confidence 23578999999998877643 47899998877666554
No 43
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=69.85 E-value=13 Score=25.96 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=48.9
Q ss_pred CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeC-----cce-------EEEEEecCCC---CCCCC
Q 032330 24 TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDD-----TGA-------IYFTARNDQV---DIMTP 88 (143)
Q Consensus 24 ~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDe-----TG~-------I~ltlW~~~~---~~i~~ 88 (143)
|+.+.|.+++..-.+.+ .++ .| .-|++..|+-+ .|. |++++|+.++ ..++.
T Consensus 1 MNkviL~GrL~~dPelR-yTp--------sG-----~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~~~l~k 66 (115)
T 3fhw_A 1 MNTLELSARVLECGAMR-HTP--------AG-----LPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPL 66 (115)
T ss_dssp CEEEEEEEEEEEECCCE-ECT--------TS-----CEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHTTCCT
T ss_pred CCEEEEEEEECcCcceE-ECC--------CC-----CEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhhhccCC
Confidence 45678888888877644 223 45 35888777743 343 8899999554 45789
Q ss_pred CCEEEEeceEEceeC-C-eEEEEeC
Q 032330 89 GTTVILRNAKIDMFK-G-SMRLAVD 111 (143)
Q Consensus 89 Gd~v~I~na~~~~~~-g-~~~L~ig 111 (143)
|+.|.|.+-.....+ | .++|.+.
T Consensus 67 Gs~V~VeGrL~trs~~G~kl~l~a~ 91 (115)
T 3fhw_A 67 GTEMQVQGFLAPARKDSVKVKLHLQ 91 (115)
T ss_dssp TCEEEEEEEEEESSTTCSSEEEEEE
T ss_pred CCEEEEEEEEEECCCCCCEEEEEEE
Confidence 999999988764332 2 4555443
No 44
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=68.81 E-value=5.4 Score=28.70 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=41.4
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe--------------eCcceEEEEEecCCCC----
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG--------------DDTGAIYFTARNDQVD---- 84 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg--------------DeTG~I~ltlW~~~~~---- 84 (143)
.++.|.|+++|..-.+.. .++ +| ..++...|+ |+|=-+++++|+..++
T Consensus 4 ~mN~v~L~GrL~~dPelr-~t~--------~G-----~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~ 69 (145)
T 1qvc_A 4 GVNKVILVGNLGQDPEVR-YMP--------NG-----GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASE 69 (145)
T ss_dssp CEEEEEEEEEESSCCEEE-CCS--------SS-----CCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHH
T ss_pred ceEEEEEEEEeCCCCEEE-ECC--------CC-----CEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHH
Confidence 355677888877655433 222 34 246666664 2344699999986654
Q ss_pred CCCCCCEEEEeceEE
Q 032330 85 IMTPGTTVILRNAKI 99 (143)
Q Consensus 85 ~i~~Gd~v~I~na~~ 99 (143)
.++.|+.|.|.+-..
T Consensus 70 ~l~KG~~V~V~G~L~ 84 (145)
T 1qvc_A 70 YLRKGSQVYIEGQLR 84 (145)
T ss_dssp HCCTTCEEEEEEEEE
T ss_pred hcCCCCEEEEEEEEE
Confidence 378999999998754
No 45
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=67.51 E-value=9.2 Score=26.69 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=47.2
Q ss_pred eeccCC--CCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCC--CCCCCCCE
Q 032330 16 KVDQLK--PGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQV--DIMTPGTT 91 (143)
Q Consensus 16 kI~dL~--p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~--~~i~~Gd~ 91 (143)
.+++++ ++...|.|++.|++--. .. .-++.|.||.|.+.+=++.- -.+.+++.
T Consensus 27 TV~~a~~~~Dd~~V~L~G~Iv~~~~----~d-------------------~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~ 83 (109)
T 1nnx_A 27 TVESAKSLRDDTWVTLRGNIVERIS----DD-------------------LYVFKDASGTINVDIDHKRWNGVTVTPKDT 83 (109)
T ss_dssp CHHHHTTSCSSEEEEEEEEEEEEEE----TT-------------------EEEEEETTEEEEEECCGGGSTTCCCCTTSC
T ss_pred eHHHHhhCcCCCeEEEEEEEEEEeC----CC-------------------eEEEECCCccEEEEEChhhcCCcccCCCCE
Confidence 344443 34556888888876431 01 13588999999998633321 24799999
Q ss_pred EEEeceEEceeCCeEEEEeC
Q 032330 92 VILRNAKIDMFKGSMRLAVD 111 (143)
Q Consensus 92 v~I~na~~~~~~g~~~L~ig 111 (143)
|+|.+-+=+.|+ ..++.+.
T Consensus 84 Vri~GevDkd~~-~~eIdV~ 102 (109)
T 1nnx_A 84 VEIQGEVDKDWN-SVEIDVK 102 (109)
T ss_dssp EEEEEEEEEETT-EEEEEEE
T ss_pred EEEEEEECCCCC-ceEEEEE
Confidence 999998887775 4566544
No 46
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=65.65 E-value=10 Score=28.02 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=41.9
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEee---------------CcceEEEEEecCCCC---
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGD---------------DTGAIYFTARNDQVD--- 84 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgD---------------eTG~I~ltlW~~~~~--- 84 (143)
+++.|.|+++|..-.+.. .++ +| ..|+...|+= +|=-+++++|+.+++
T Consensus 3 ~~N~V~LiG~L~~dPelr-~t~--------~G-----~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~ 68 (168)
T 3afp_A 3 GDTTITIVGNLTADPELR-FTS--------SG-----AAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVA 68 (168)
T ss_dssp CCCEEEEEEEESSSCCCE-ECT--------TS-----CEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHH
T ss_pred ccCEEEEEEEECCCCEEE-ECC--------CC-----CEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHH
Confidence 356678888877655433 222 34 3577766651 244699999986553
Q ss_pred -CCCCCCEEEEeceEE
Q 032330 85 -IMTPGTTVILRNAKI 99 (143)
Q Consensus 85 -~i~~Gd~v~I~na~~ 99 (143)
.++.|+.|.|.+-..
T Consensus 69 ~~l~KG~~V~VeGrL~ 84 (168)
T 3afp_A 69 ESLTRGARVIVTGRLK 84 (168)
T ss_dssp HHCCTTCEEEEEEEEE
T ss_pred HhCCCCCEEEEEEEEE
Confidence 478999999997654
No 47
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=65.41 E-value=9.6 Score=26.98 Aligned_cols=62 Identities=8% Similarity=0.089 Sum_probs=40.8
Q ss_pred CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe------e-------CcceEEEEEecCCCC----CC
Q 032330 24 TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG------D-------DTGAIYFTARNDQVD----IM 86 (143)
Q Consensus 24 ~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg------D-------eTG~I~ltlW~~~~~----~i 86 (143)
++.|.|.+.+..-.+.. .++ .| ..++...|| | +|=-+++++|+.+++ .+
T Consensus 2 mN~V~L~GrL~~dPelr-~t~--------~G-----~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l 67 (134)
T 2vw9_A 2 FNKVIMVGRLTRNVELK-YLP--------SG-----SAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYL 67 (134)
T ss_dssp CCCEEEEEEESSCCEEE-ECT--------TS-----CEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHC
T ss_pred eeEEEEEEEECCCCEEE-ECC--------CC-----CEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhC
Confidence 56678888877655433 222 34 346665553 2 233699999986553 36
Q ss_pred CCCCEEEEeceEE
Q 032330 87 TPGTTVILRNAKI 99 (143)
Q Consensus 87 ~~Gd~v~I~na~~ 99 (143)
+.|+.|.|.+-..
T Consensus 68 ~KG~~V~V~G~L~ 80 (134)
T 2vw9_A 68 SKGSSVLIEGRLT 80 (134)
T ss_dssp CTTCEEEEEEEEE
T ss_pred CCCCEEEEEEEEE
Confidence 8999999998755
No 48
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=64.65 E-value=52 Score=28.14 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=60.0
Q ss_pred CCceeeeccCCCC---CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCee-EEEEEeeCcceEEEEEecC--C--
Q 032330 11 KPVFIKVDQLKPG---TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRI-AECLVGDDTGAIYFTARND--Q-- 82 (143)
Q Consensus 11 ~~~~~kI~dL~p~---~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v-~~~lVgDeTG~I~ltlW~~--~-- 82 (143)
..+++.|.+|.+. ...|.|.|.|.++-. . +.+ +=+.|-|.+|.|.+.+-.+ .
T Consensus 20 ~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~--------------~------g~~l~Fi~LrD~~g~iQvv~~~~~~~~~ 79 (487)
T 1eov_A 20 GQKRVKFVDLDEAKDSDKEVLFRARVHNTRQ--------------Q------GATLAFLTLRQQASLIQGLVKANKEGTI 79 (487)
T ss_dssp CCCCCCGGGCCTTTTTTCEEEEEEEEEEEEE--------------C------SSSEEEEEEEETTEEEEEEEECCSSSSS
T ss_pred ccceeEHHHhcccccCCCEEEEEEEEEEeec--------------c------CCccEEEEEEECCccEEEEEeccccccc
Confidence 3556678898754 344677777765431 2 234 7788899999999987432 1
Q ss_pred -------CCCCCCCCEEEEeceEEcee-------CCeEEEEeCCceeEEEc
Q 032330 83 -------VDIMTPGTTVILRNAKIDMF-------KGSMRLAVDKWGRIEVT 119 (143)
Q Consensus 83 -------~~~i~~Gd~v~I~na~~~~~-------~g~~~L~ig~~g~I~~~ 119 (143)
+..+..||+|.|++-..+.- .|.++|.+.+.--+.+.
T Consensus 80 ~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 80 SKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp CHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred cHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence 23578999999998776554 26788888766555443
No 49
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=63.75 E-value=25 Score=29.60 Aligned_cols=84 Identities=11% Similarity=0.053 Sum_probs=57.8
Q ss_pred eeccCCCC--CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecC-----CCCCCCC
Q 032330 16 KVDQLKPG--TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARND-----QVDIMTP 88 (143)
Q Consensus 16 kI~dL~p~--~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~-----~~~~i~~ 88 (143)
.+++|.+. .+.|.|.|.|.++-. . +.++=..+-|.+|.|.+.+-.+ .+..+..
T Consensus 6 ~~~~l~~~~~~~~V~v~Gwv~~~R~--------------~------g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l~~ 65 (429)
T 1wyd_A 6 FIADVTPEYDGKEVIWAGWVHLLRD--------------L------GGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQ 65 (429)
T ss_dssp CTTTCCGGGTTCEEEEEEEEEEEEE--------------E------TTEEEEEEEETTEEEEEEECTTSTTHHHHTTCCT
T ss_pred EHHHhhHHhCCCEEEEEEEEEEEec--------------C------CCeEEEEEEECCeeEEEEEeCChHHHHHHHhCCC
Confidence 35666542 344677777766431 1 3477888999999999988542 1245789
Q ss_pred CCEEEEeceEEceeCC--eEEEEeCCceeEEEc
Q 032330 89 GTTVILRNAKIDMFKG--SMRLAVDKWGRIEVT 119 (143)
Q Consensus 89 Gd~v~I~na~~~~~~g--~~~L~ig~~g~I~~~ 119 (143)
||+|.|.+-..+.-.+ .++|.+.+.--+.+.
T Consensus 66 ~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 66 ESVIQVRGIVKADKRAPRGIELHAEEITLLSKA 98 (429)
T ss_dssp TCEEEEEEEEEECSSSGGGEEEEEEEEEEEECC
T ss_pred CCEEEEEEEEEecCCCCccEEEEEeEEEEeccC
Confidence 9999999987766554 899988776555443
No 50
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=63.10 E-value=21 Score=25.56 Aligned_cols=62 Identities=10% Similarity=0.095 Sum_probs=43.9
Q ss_pred CCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeC-----cc-------eEEEEEecCCCCC----CCC
Q 032330 25 TGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDD-----TG-------AIYFTARNDQVDI----MTP 88 (143)
Q Consensus 25 ~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDe-----TG-------~I~ltlW~~~~~~----i~~ 88 (143)
+.|.|++.+..-.+.+ .++ .| ..|++..||-+ +| -|++++|+.+++. ++.
T Consensus 20 NkViLiGrL~~DPElR-yTp--------sG-----~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~K 85 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRK-VSP--------SG-----IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITV 85 (134)
T ss_dssp EEEEEEEEEEEEEEEE-ECT--------TC-----CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCT
T ss_pred eEEEEEEEECcCCceE-ECC--------CC-----CEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCC
Confidence 6688999988766554 233 45 35888777543 34 2899999876654 578
Q ss_pred CCEEEEeceEEc
Q 032330 89 GTTVILRNAKID 100 (143)
Q Consensus 89 Gd~v~I~na~~~ 100 (143)
|+.|.|.+-...
T Consensus 86 Gs~V~VeGrL~t 97 (134)
T 1v1q_A 86 GSRITVQGFISC 97 (134)
T ss_dssp TCEEEEEEEEEE
T ss_pred CCEEEEEEEEEE
Confidence 999999987553
No 51
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=63.01 E-value=2 Score=32.11 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=21.0
Q ss_pred CeeEEEEEeeCcceEEEEEecCCCC
Q 032330 60 PRIAECLVGDDTGAIYFTARNDQVD 84 (143)
Q Consensus 60 ~~v~~~lVgDeTG~I~ltlW~~~~~ 84 (143)
..+.++.|.|.||.+.++++++.+.
T Consensus 78 ry~l~~~i~D~Tg~~~~t~F~~~ae 102 (181)
T 1l1o_C 78 RMILSVNIADFQENQWVTCFQESAE 102 (181)
T ss_dssp EEEEEEEEECSSCEEEEEEEHHHHH
T ss_pred EEEEEEEEEeCCCCEEEEEEhHHHH
Confidence 3466799999999999999997653
No 52
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=61.58 E-value=4.6 Score=38.88 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=31.6
Q ss_pred CCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCC----CCCCCCCCEEEEeceE
Q 032330 25 TGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQ----VDIMTPGTTVILRNAK 98 (143)
Q Consensus 25 ~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~----~~~i~~Gd~v~I~na~ 98 (143)
..+.+-+.|.++..+. +++ | ..|+-+.+.|+||.+.+++|.+. ...+.+|..+.|++-.
T Consensus 1043 ~~v~v~G~v~~~~~~~--Tk~--------G-----~~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~~~~~v~G~v 1105 (1220)
T 2hpi_A 1043 PKVLLSGMVEEVVRKP--TRS--------G-----GMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEV 1105 (1220)
T ss_dssp CEEEEEEEECCC---------------------------CEEEEETTEEEEEC-------------CTTCEEEEEEEE
T ss_pred CeEEEEEEEEEEEEee--cCC--------C-----CeEEEEEEEECCCCEEEEEcHHHHHHHHHHhccCCEEEEEEEE
Confidence 4477888888877644 343 2 36899999999999999999754 3446778888887644
No 53
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=59.94 E-value=2.1 Score=32.25 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=20.8
Q ss_pred CeeEEEEEeeCcceEEEEEecCCCC
Q 032330 60 PRIAECLVGDDTGAIYFTARNDQVD 84 (143)
Q Consensus 60 ~~v~~~lVgDeTG~I~ltlW~~~~~ 84 (143)
..+.++.|.|.||.+.++++++.+.
T Consensus 74 RYil~~~i~D~TG~~wvt~F~e~ae 98 (172)
T 3u50_C 74 HLMLRAFVQDSTGTIPVMIFDQQSS 98 (172)
T ss_dssp EECEEEEEEETTEEEEEEECHHHHH
T ss_pred EEEEEEEEEeCCCCEEEEEEhHHHH
Confidence 3467899999999999999986543
No 54
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=59.92 E-value=39 Score=29.27 Aligned_cols=75 Identities=5% Similarity=0.036 Sum_probs=55.3
Q ss_pred CCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecCCC----------CCCCCCCEEEE
Q 032330 25 TGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARNDQV----------DIMTPGTTVIL 94 (143)
Q Consensus 25 ~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~~~----------~~i~~Gd~v~I 94 (143)
..|.|.|.|.++-. .| ..++=+.|-|.+|.|.+.+-.+.. ..+..||+|.|
T Consensus 56 ~~V~v~Grv~~~R~--------------~g-----kk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V 116 (521)
T 3bju_A 56 ITLKVAGRIHAKRA--------------SG-----GKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGV 116 (521)
T ss_dssp CCEEEEEEEEEEEE--------------SS-----SSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEE
T ss_pred cEEEEEEEEEEEec--------------CC-----CCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEE
Confidence 34788888876431 12 157888899999999998864322 23788999999
Q ss_pred eceEEceeCCeEEEEeCCceeEEE
Q 032330 95 RNAKIDMFKGSMRLAVDKWGRIEV 118 (143)
Q Consensus 95 ~na~~~~~~g~~~L~ig~~g~I~~ 118 (143)
.+-..+.-.|.++|.+.++--+.+
T Consensus 117 ~G~v~~t~~ge~ei~~~~i~~l~~ 140 (521)
T 3bju_A 117 QGNPGKTKKGELSIIPYEITLLSP 140 (521)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEEC
T ss_pred EEEEEecCCCCEEEEEeEEEEeec
Confidence 999887778999999887655544
No 55
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=59.19 E-value=9.2 Score=26.54 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=40.1
Q ss_pred CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe--------------eCcceEEEEEec-CCCC----
Q 032330 24 TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG--------------DDTGAIYFTARN-DQVD---- 84 (143)
Q Consensus 24 ~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg--------------DeTG~I~ltlW~-~~~~---- 84 (143)
++.|.|.+++..-.+.. .++ +| ..++...|| |+|=-+++++|+ .+++
T Consensus 6 ~N~v~l~Grl~~dpelr-~t~--------~G-----~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~ 71 (124)
T 3ulp_A 6 LNKIMLIGRVGCEPDIK-ILN--------GG-----DKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDK 71 (124)
T ss_dssp EEEEEEEEEECSCCEEE-ECT--------TS-----CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHH
T ss_pred ceEEEEEEEECCCcEEE-ECC--------CC-----CEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHh
Confidence 45677888877655433 222 33 246665553 134459999999 5554
Q ss_pred CCCCCCEEEEeceEE
Q 032330 85 IMTPGTTVILRNAKI 99 (143)
Q Consensus 85 ~i~~Gd~v~I~na~~ 99 (143)
.++.|+.|.|.+-..
T Consensus 72 ~l~KG~~V~V~G~L~ 86 (124)
T 3ulp_A 72 YLRKGRRVYVQGSLH 86 (124)
T ss_dssp HCCTTCEEEEEEEEE
T ss_pred hcCCCCEEEEEEEEE
Confidence 378999999998765
No 56
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=57.82 E-value=12 Score=29.16 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=27.0
Q ss_pred eEEEEEecCCCCCCCCCCEEEEeceEEceeC
Q 032330 73 AIYFTARNDQVDIMTPGTTVILRNAKIDMFK 103 (143)
Q Consensus 73 ~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~ 103 (143)
++.+.|-++..+.++|||.|.|.|-+...+.
T Consensus 212 si~v~l~~dLvd~~~PGDrV~vtGI~~~~~~ 242 (268)
T 2vl6_A 212 QLEIILEDDLVDSARPGDRVKVTGILDIKQD 242 (268)
T ss_dssp EEEEEEEGGGTTSSCTTCEEEEEEEEEEECS
T ss_pred EEEEEEccCccCcccCCCEEEEEEEEEEeec
Confidence 5677788899999999999999999987665
No 57
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=57.09 E-value=28 Score=30.02 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=46.3
Q ss_pred CeeEEEEEeeCcceEEEEEecC---------CCCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEE
Q 032330 60 PRIAECLVGDDTGAIYFTARND---------QVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEV 118 (143)
Q Consensus 60 ~~v~~~lVgDeTG~I~ltlW~~---------~~~~i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~ 118 (143)
+.++=+.|-|.+|.|.+.+-.+ .+..+..||+|.|.+-..+.-.|.++|.+.+.--+.+
T Consensus 80 gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl~~ 147 (504)
T 1e1o_A 80 GKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTK 147 (504)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEEC
T ss_pred CCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEEEecc
Confidence 3477788999999999988543 2344788999999999888778899999887655544
No 58
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=56.60 E-value=29 Score=29.28 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=57.6
Q ss_pred eeccCCCC--CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecC--------CCCC
Q 032330 16 KVDQLKPG--TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARND--------QVDI 85 (143)
Q Consensus 16 kI~dL~p~--~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~--------~~~~ 85 (143)
.+++|... ...|.|.|.|.++-. . +.++=..|-|.+|.+.+.+-.+ .+..
T Consensus 6 ~~~~l~~~~~~~~V~v~G~v~~~R~--------------~------g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~ 65 (434)
T 1x54_A 6 YCQEVKPELDGKKVRLAGWVYTNMR--------------V------GKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKK 65 (434)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEEEE--------------E------TTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHT
T ss_pred EHHHhhHHhCCCEEEEEEEEEEEec--------------C------CCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhc
Confidence 46677543 344677777766431 1 3477888999999999988532 1245
Q ss_pred CCCCCEEEEeceEEceeCC--eEEEEeCCceeEEEc
Q 032330 86 MTPGTTVILRNAKIDMFKG--SMRLAVDKWGRIEVT 119 (143)
Q Consensus 86 i~~Gd~v~I~na~~~~~~g--~~~L~ig~~g~I~~~ 119 (143)
+..||+|.+.+...+.-.+ .++|.+.+.--+.+.
T Consensus 66 l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 66 LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp CCTTCEEEEEEEEEECTTSGGGEEEEEEEEEEEECC
T ss_pred CCCCCEEEEEEEEEecCCCCccEEEEEeEEEEeecC
Confidence 7899999999987766544 789988776444443
No 59
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=55.74 E-value=57 Score=25.29 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=57.8
Q ss_pred EEEEEEecCcce-eccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEec-CCCCCCCCCCEEEEeceEEceeCCeE
Q 032330 29 LTVKVVSSKPVQ-VNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARN-DQVDIMTPGTTVILRNAKIDMFKGSM 106 (143)
Q Consensus 29 i~~kVl~~~~~~-~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~-~~~~~i~~Gd~v~I~na~~~~~~g~~ 106 (143)
+.+.||...++= ++.+ .| ..+|-.+.||-||--.++-.+| ..-+.+.+..+|.|.|.+- ++|.|
T Consensus 15 ~~VmVLkaTepF~Ye~~--------E~----~~~MFHATVATetqfF~VKVfn~~LKeKF~pk~iI~ISdY~~--~~gfL 80 (208)
T 3rn5_A 15 LPVMVLKAKKPFTFETQ--------EG----KQEMFHATVATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYR--HSGFL 80 (208)
T ss_dssp EEEEEEEECCCEEEEET--------TE----EEEEEEEEEECSSCEEEEEECCGGGGGTCCTTCEEEEESBEE--CSSCE
T ss_pred eEEEEEeccCCeeeecc--------cc----cceEEEEEEeeccceEEEEEecchhhhhcCCCcEEEEEeccc--ccceE
Confidence 788888887633 2222 22 3579999999999999999999 4456689999999999874 57876
Q ss_pred EEEeCCceeEEEcC
Q 032330 107 RLAVDKWGRIEVTE 120 (143)
Q Consensus 107 ~L~ig~~g~I~~~~ 120 (143)
++ .+.+++..++
T Consensus 81 Ei--~~~SsVse~~ 92 (208)
T 3rn5_A 81 EV--NSASRVLDAE 92 (208)
T ss_dssp EE--CTTSEEEECC
T ss_pred EE--ecccEEEEcc
Confidence 65 4667887775
No 60
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=55.45 E-value=16 Score=28.53 Aligned_cols=63 Identities=8% Similarity=0.087 Sum_probs=42.7
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEee----------CcceEEEEEecCCCC---CCCCC
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGD----------DTGAIYFTARNDQVD---IMTPG 89 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgD----------eTG~I~ltlW~~~~~---~i~~G 89 (143)
.++.+.|.+++..-.+.. .++ +| ..++...||= +|--+++++|+.+++ .++.|
T Consensus 127 ~~N~v~l~G~l~~dpe~r-~t~--------~G-----~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~~l~KG 192 (264)
T 2fxq_A 127 ALNQVILMGNLTRDPDLR-YTP--------QG-----TAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWASELRKG 192 (264)
T ss_dssp CCEEEEEEEEESSCCCCE-ECT--------TC-----CEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHTTCCTT
T ss_pred ceEEEEEEEEECCCCEEE-ECC--------CC-----CEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhhhcCCC
Confidence 466778888887655433 222 44 3577766642 345799999985433 68999
Q ss_pred CEEEEeceEE
Q 032330 90 TTVILRNAKI 99 (143)
Q Consensus 90 d~v~I~na~~ 99 (143)
+.|.|.+-..
T Consensus 193 ~~V~V~G~l~ 202 (264)
T 2fxq_A 193 DGLLVIGRLV 202 (264)
T ss_dssp CEEEEEEEEE
T ss_pred CEEEEEEEEE
Confidence 9999998754
No 61
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=55.37 E-value=11 Score=27.55 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=41.7
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe------eC-cc-------eEEEEEecCCCC----
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG------DD-TG-------AIYFTARNDQVD---- 84 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg------De-TG-------~I~ltlW~~~~~---- 84 (143)
+++.|.|+++|..-.+.. .++ .| ..++...|+ |+ +| -+++++|+.+++
T Consensus 7 ~mN~V~LiGrL~~dPelr-~t~--------~G-----~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~ 72 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVR-YTP--------NG-----NAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGE 72 (158)
T ss_dssp CEEEEEEEEEESSSCEEE-ECT--------TC-----CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHH
T ss_pred ccCEEEEEEEECCCCEEE-ECC--------CC-----CEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHh
Confidence 466788888887755443 222 34 346665553 22 34 479999996554
Q ss_pred CCCCCCEEEEeceEE
Q 032330 85 IMTPGTTVILRNAKI 99 (143)
Q Consensus 85 ~i~~Gd~v~I~na~~ 99 (143)
.++.|+.|.|.+-..
T Consensus 73 ~l~KG~~V~VeG~L~ 87 (158)
T 3tqy_A 73 YLRKGSKIYIEGSLR 87 (158)
T ss_dssp HCCTTCEEEEEEEEE
T ss_pred hcCCCCEEEEEEEEE
Confidence 378999999998765
No 62
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=55.15 E-value=14 Score=25.97 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=40.5
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe-------------------eCcceEEEEEecC-C
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG-------------------DDTGAIYFTARND-Q 82 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg-------------------DeTG~I~ltlW~~-~ 82 (143)
+++.|.|.|++..-.+.. .++ .| ..++...|| +.|--+++++|++ +
T Consensus 13 ~mN~V~L~GrL~~dPelr-~t~--------~G-----~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~ 78 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLR-QVE--------GK-----NPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGL 78 (132)
T ss_dssp CEEEEEEEEEECSCCEEE-CCT--------TS-----CCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTH
T ss_pred cCcEEEEEEEECCCCEEE-ECC--------CC-----CEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHH
Confidence 466788888887755433 222 33 235554443 2344688999995 5
Q ss_pred CC----CCCCCCEEEEeceEE
Q 032330 83 VD----IMTPGTTVILRNAKI 99 (143)
Q Consensus 83 ~~----~i~~Gd~v~I~na~~ 99 (143)
++ .++.|+.|.|.+-..
T Consensus 79 Ae~~~~~l~KG~~V~V~G~L~ 99 (132)
T 3ull_A 79 RDVAYQYVKKGSRIYLEGKID 99 (132)
T ss_dssp HHHHHHHCCTTCEEEEEEEEE
T ss_pred HHHHHhhCCCCCEEEEEEEEE
Confidence 54 378999999998765
No 63
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=54.61 E-value=53 Score=28.84 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=47.4
Q ss_pred CeeEEEEEeeCcceEEEEEecC-----CCCCCCCCCEEEEeceEEce-------eCCeEEEEeCCceeEEEcCCCceEE
Q 032330 60 PRIAECLVGDDTGAIYFTARND-----QVDIMTPGTTVILRNAKIDM-------FKGSMRLAVDKWGRIEVTEPADFEV 126 (143)
Q Consensus 60 ~~v~~~lVgDeTG~I~ltlW~~-----~~~~i~~Gd~v~I~na~~~~-------~~g~~~L~ig~~g~I~~~~~~~~~v 126 (143)
+.+.=+.+-|.+|.|.+.+-.+ .+..+..|++|.|.+-.... -.|.++|.+.+.--+.+..+..|.+
T Consensus 32 G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i 110 (580)
T 1l0w_A 32 GGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPV 110 (580)
T ss_dssp SSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCC
T ss_pred CCeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCc
Confidence 3477788999999999988532 23457899999999987654 3578999988775555443233444
No 64
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=53.80 E-value=4.9 Score=36.77 Aligned_cols=49 Identities=12% Similarity=0.142 Sum_probs=41.0
Q ss_pred ceEEEEEecC---CCCCCCCCCEEEEeceEEceeC-----CeEEEEeCCceeEEEcC
Q 032330 72 GAIYFTARND---QVDIMTPGTTVILRNAKIDMFK-----GSMRLAVDKWGRIEVTE 120 (143)
Q Consensus 72 G~I~ltlW~~---~~~~i~~Gd~v~I~na~~~~~~-----g~~~L~ig~~g~I~~~~ 120 (143)
..+.||+|+. +...++||..++|.|-..+..+ +.++|+.++.++++.++
T Consensus 525 k~~iLSIW~P~edl~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk~T~~~~L~ 581 (738)
T 1miu_A 525 KSALLSIWRPSSDLSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKRTQYQQLP 581 (738)
T ss_dssp CCEEEEEESCCHHHHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEEEEEEEEC
T ss_pred ceEEEEEeCCChHHHhhccCCcEEEEEEeeccCCCccCccceEEEeecccceeEECC
Confidence 4889999984 3455899999999999887665 36899999999999986
No 65
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=53.41 E-value=21 Score=27.29 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=39.7
Q ss_pred CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEee---------------CcceEEEEEecCCCC----
Q 032330 24 TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGD---------------DTGAIYFTARNDQVD---- 84 (143)
Q Consensus 24 ~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgD---------------eTG~I~ltlW~~~~~---- 84 (143)
.+.|.|+++|..-.+.+ .++ +| ..|+...|+= +|=-+++++|..+++
T Consensus 4 ~N~V~LiGrL~~DPElR-~T~--------~G-----~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~ 69 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELR-FTP--------SG-----AAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAE 69 (199)
T ss_dssp CCEEEEEEEESSCCEEE-ECT--------TC-----CEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHH
T ss_pred ccEEEEEEEECCCCeEE-ECC--------CC-----CEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHH
Confidence 44567777776655433 222 33 2466655542 344689999997654
Q ss_pred CCCCCCEEEEeceEE
Q 032330 85 IMTPGTTVILRNAKI 99 (143)
Q Consensus 85 ~i~~Gd~v~I~na~~ 99 (143)
.++.|+.|.|.+-..
T Consensus 70 ~L~KG~~V~VeGrL~ 84 (199)
T 3eiv_A 70 SLQRGMRVIVQGRLK 84 (199)
T ss_dssp HCCTTCEEEEEEEEE
T ss_pred hcCCCCEEEEEEEEE
Confidence 378999999997665
No 66
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=53.02 E-value=15 Score=28.93 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=26.8
Q ss_pred eEEEEEecCCCCCCCCCCEEEEeceEEceeC
Q 032330 73 AIYFTARNDQVDIMTPGTTVILRNAKIDMFK 103 (143)
Q Consensus 73 ~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~ 103 (143)
++.+.|-++..+.++|||.|.|.|-+...++
T Consensus 199 si~V~l~~dLvd~~~PGDrV~vtGI~~~~~~ 229 (279)
T 1ltl_A 199 QITVVLEDDLVDTLTPGDIVRVTGTLRTVRD 229 (279)
T ss_dssp EEEEEEEGGGTTCCCTTCEEEEEEEEEEEEE
T ss_pred EEEEEEcccccCccCCCCEEEEEEEEEEeeC
Confidence 5777888899999999999999999987663
No 67
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=51.82 E-value=44 Score=29.16 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=45.7
Q ss_pred CeeEEEEEeeCcceEEEEEecCC--------CCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEEc
Q 032330 60 PRIAECLVGDDTGAIYFTARNDQ--------VDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVT 119 (143)
Q Consensus 60 ~~v~~~lVgDeTG~I~ltlW~~~--------~~~i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~~ 119 (143)
+.++=+.|-|.+|.|.+.+=.+. ...+..||+|.|.+-..+.-.|.++|.+.+.--+.+.
T Consensus 102 Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a 169 (529)
T 4ex5_A 102 GKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKA 169 (529)
T ss_dssp TTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECC
T ss_pred CCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecC
Confidence 34777889999999998875432 2358899999999988887778999988776444443
No 68
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=50.89 E-value=23 Score=27.07 Aligned_cols=96 Identities=18% Similarity=0.049 Sum_probs=59.3
Q ss_pred CCceeeeccCC-----CC--CCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEE---EeeCcceEEEEEec
Q 032330 11 KPVFIKVDQLK-----PG--TTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECL---VGDDTGAIYFTARN 80 (143)
Q Consensus 11 ~~~~~kI~dL~-----p~--~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~l---VgDeTG~I~ltlW~ 80 (143)
.-+++++.+|. |. ..+.-+.+.|++..++. ... .|. ...-.- +.|....|.+-|++
T Consensus 35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk-~~~--------~gk-----~y~~w~l~DL~~~~~~V~lfLFg 100 (200)
T 3ebe_A 35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQ-SSN--------NGK-----TFSIWRLNDLKDLDKYISLFLFG 100 (200)
T ss_dssp TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC---------------------CCEEEEEECSSSTTCCEEEEECH
T ss_pred CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCcc-CcC--------CCC-----eEEEEEEEecCCCCcEEEEEEec
Confidence 34566666662 21 22445778888887654 222 331 122333 45666789999998
Q ss_pred CCC---CCCCCCCEEEEeceEEceeC---CeEEEEeCCceeEEEcC
Q 032330 81 DQV---DIMTPGTTVILRNAKIDMFK---GSMRLAVDKWGRIEVTE 120 (143)
Q Consensus 81 ~~~---~~i~~Gd~v~I~na~~~~~~---g~~~L~ig~~g~I~~~~ 120 (143)
+.. -.+.+|++|-|-|+.+-..+ +...|.++...+|.+++
T Consensus 101 ~a~~~~~k~~~G~ViaiLNP~i~~~~~~~~~~sLsv~~~~~Il~IG 146 (200)
T 3ebe_A 101 DVHKEHWKTDQGTVIGLLNANPMKPKEGTDEVCLSVDNPQKVLLMG 146 (200)
T ss_dssp HHHHHHTTCCTTEEEEEESCEECCCCTTCCCEEEECSSGGGEEEEE
T ss_pred hHHHHhcCcCCceEEEEECCEEccCCCCCcceEEEECCcccEEEEE
Confidence 532 24789999999999974332 36889988888887775
No 69
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=50.58 E-value=58 Score=29.79 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=58.9
Q ss_pred CCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCc-ceEEEEEecCCCCCCCCCCEEEEeceE
Q 032330 20 LKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDT-GAIYFTARNDQVDIMTPGTTVILRNAK 98 (143)
Q Consensus 20 L~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeT-G~I~ltlW~~~~~~i~~Gd~v~I~na~ 98 (143)
..|.-.-|++.|.|+.+.... | .---+.++|+. --+-+..|....+.+++|..|-+.|-.
T Consensus 607 f~p~~~EvDivG~Vv~v~~~~-------------~------~~~~vylsD~~~nll~Ikf~~~l~eD~~~~~~va~sNL~ 667 (738)
T 1miu_A 607 FQPPCSEVDVVGVVVSVVKPI-------------G------LAPLVYLSDECLNLLVVKFGIDLNEDIKPRVLIAASNLQ 667 (738)
T ss_dssp CCTTTTEEEEEEEEEEEECCT-------------T------SCCEEEEECSSSCEEEEEESSCCCSCCCSSCEEEEEEEE
T ss_pred ccCCCCceeEEEEEEEEcccC-------------c------ccceEEEEcCCCcEEEEEEecCchhhCccccEEEEeeeE
Confidence 456667899999999997422 1 11245578987 455667798765559999999999988
Q ss_pred Ecee--CCeEEEEeCCceeEEEcC
Q 032330 99 IDMF--KGSMRLAVDKWGRIEVTE 120 (143)
Q Consensus 99 ~~~~--~g~~~L~ig~~g~I~~~~ 120 (143)
.+-. .+-+.|..+.++.+...|
T Consensus 668 ~r~~~~~~ip~~~a~~~t~fs~~p 691 (738)
T 1miu_A 668 CQPESTSGVPTLFAGHFSIFSASP 691 (738)
T ss_dssp CCSCCSSSCCCEEECTTCEEESSC
T ss_pred eeccccccCceEEeccceEEecCc
Confidence 7544 255788888888776665
No 70
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=49.15 E-value=15 Score=29.54 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=42.8
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe------eCcc-------eEEEEEecCCCC---CC
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG------DDTG-------AIYFTARNDQVD---IM 86 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg------DeTG-------~I~ltlW~~~~~---~i 86 (143)
.++.|.|.+.|..-.+.. .++ .| ..++...|+ |+.| -+++++|+.+++ .+
T Consensus 128 mmN~V~L~GrL~~dPelr-~t~--------~G-----~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~l 193 (301)
T 1se8_A 128 AMNEVLVLGNVTRDPEIR-YTP--------AG-----DAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKEL 193 (301)
T ss_dssp CEEEEEEEEEECSCCEEE-ECT--------TC-----CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTC
T ss_pred ceeEEEEEEEECcCCEEE-ECC--------CC-----CEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHhc
Confidence 355677888887655433 222 34 357776665 2223 699999985432 28
Q ss_pred CCCCEEEEeceEE-cee
Q 032330 87 TPGTTVILRNAKI-DMF 102 (143)
Q Consensus 87 ~~Gd~v~I~na~~-~~~ 102 (143)
+.|+.|.|.+-.. +.|
T Consensus 194 ~KG~~V~V~GrL~~~~y 210 (301)
T 1se8_A 194 RKGDPVMIMGRLVNEGW 210 (301)
T ss_dssp CTTCEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEEEeeeeE
Confidence 9999999998765 344
No 71
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=48.64 E-value=5.7 Score=29.74 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=22.7
Q ss_pred cceEEEEEecCCCC----CCCCCCEEEEeceEE
Q 032330 71 TGAIYFTARNDQVD----IMTPGTTVILRNAKI 99 (143)
Q Consensus 71 TG~I~ltlW~~~~~----~i~~Gd~v~I~na~~ 99 (143)
|=-+++++|+..++ .++.|+.|.|.+-..
T Consensus 53 t~~i~vv~wg~~Ae~~~~~l~KG~~V~VeGrL~ 85 (178)
T 1eqq_A 53 TEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLR 85 (178)
T ss_dssp EEEEEEEECHHHHHHHHHHCCTTCEEEECCEEE
T ss_pred cEEEEEEEccHHHHHHHHhcCCCCEEEEEEEEE
Confidence 34689999986553 378999999998765
No 72
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=47.65 E-value=95 Score=23.95 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=57.5
Q ss_pred EEEEEEecCcce-eccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecC-CCCCCCCCCEEEEeceEEceeCCeE
Q 032330 29 LTVKVVSSKPVQ-VNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARND-QVDIMTPGTTVILRNAKIDMFKGSM 106 (143)
Q Consensus 29 i~~kVl~~~~~~-~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~-~~~~i~~Gd~v~I~na~~~~~~g~~ 106 (143)
+++.||...++= ++.+ . ..+|-.+.||-||--.++-.+|- .-+.+.+..+|.|.|.+ .++|.|
T Consensus 12 ~~VmVLkaTepF~Ye~~--------E-----~k~MFHATVATetqfF~VKVfn~~LKeKF~pk~iI~ISdY~--~~~gfL 76 (204)
T 3rlo_A 12 KEVMVLNATESFVYEPK--------E-----QKKMFHATVATENEVFRVKVFNIDLKEKFTPKKIIAIANYV--CRNGFL 76 (204)
T ss_dssp EEEEEEEECCCEEEETT--------T-----TEEEEEEEEECSSCEEEEEECCGGGTTTTCTTCEEEEESCE--EETTEE
T ss_pred eEEEEEeccCCceeccc--------c-----cceEEEEEEeeccceEEEEEecchhhhhcCCCcEEEEEecc--cccceE
Confidence 678888887643 2222 2 26799999999999999999994 45668999999999987 467876
Q ss_pred EEEeCCceeEEEcC
Q 032330 107 RLAVDKWGRIEVTE 120 (143)
Q Consensus 107 ~L~ig~~g~I~~~~ 120 (143)
++ .+.+++..++
T Consensus 77 Ei--~~~SsVse~~ 88 (204)
T 3rlo_A 77 EV--YPFTLVADVN 88 (204)
T ss_dssp EE--CTTSEEEECC
T ss_pred EE--ecccEEEEcc
Confidence 65 4667887775
No 73
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=46.66 E-value=41 Score=29.00 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=31.5
Q ss_pred EEEEeeCcceEEEEEecCCCCCCCCCCEEEEeceEEceeCCeE
Q 032330 64 ECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSM 106 (143)
Q Consensus 64 ~~lVgDeTG~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~g~~ 106 (143)
+..+.|+||+|+|.. .-+...+-.|-+|-+.+.... +|.+
T Consensus 139 ~l~LEDesGRv~L~g-~~~~~~lVTG~VvaV~G~~~~--~G~F 178 (476)
T 3e0j_A 139 ELVLEDELQRIKLKG-TIDVSKLVTGTVLAVFGSVRD--DGKF 178 (476)
T ss_dssp EEEEECSSCEEEEEE-SCCTTTCCTTCEEEEEEEECT--TSSE
T ss_pred eEEEECCCCEEEEEE-EcccccccCCcEEEEEEEEcC--CCeE
Confidence 589999999999997 445566889999999987654 4543
No 74
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=46.46 E-value=56 Score=20.95 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=25.3
Q ss_pred CCCeeEEE--EEeeCcceEEEEEecCCCCCCCCCCEEEEece
Q 032330 58 RPPRIAEC--LVGDDTGAIYFTARNDQVDIMTPGTTVILRNA 97 (143)
Q Consensus 58 ~~~~v~~~--lVgDeTG~I~ltlW~~~~~~i~~Gd~v~I~na 97 (143)
+.+.+.++ -+-|+.|.+.+.-+.- .+.+||++.|...
T Consensus 21 s~G~~tQVrv~~l~d~~r~i~RnVkG---PVR~GDIl~L~Et 59 (67)
T 3u5c_c 21 SRGGVTQVRVEFLEDTSRTIVRNVKG---PVRENDILVLMES 59 (67)
T ss_dssp SSCCEEEEEEEESSSCSCEEEEECSS---CCCTTCEEEESSS
T ss_pred CcccEEEEEEEEecCCCcEEEecccC---CcccCCEEEEehh
Confidence 34566664 4447888877666653 3799999998754
No 75
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=45.58 E-value=20 Score=26.52 Aligned_cols=84 Identities=10% Similarity=0.144 Sum_probs=50.9
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe--------------eCcceEEEEEecC-CCCC--
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG--------------DDTGAIYFTARND-QVDI-- 85 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg--------------DeTG~I~ltlW~~-~~~~-- 85 (143)
.++.|.|+++|..-.+.. .++ .| ..++...|| |+|--+++++|+. +++.
T Consensus 22 ~mNkV~LiGrL~~DPelr-~t~--------~G-----~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~ 87 (169)
T 3lgj_A 22 MLNKVMLIGYLGDDPESK-TMT--------SG-----AEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIAL 87 (169)
T ss_dssp CEEEEEEEEEESSCCEEE-ECT--------TS-----CEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHH
T ss_pred ceeEEEEEEEECCCCeEE-ECC--------CC-----CEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHH
Confidence 466788888887755543 222 33 245555443 2355789999998 6644
Q ss_pred --CCCCCEEEEeceEE-ceeC---C----eEEEEeCCc-eeEEEcC
Q 032330 86 --MTPGTTVILRNAKI-DMFK---G----SMRLAVDKW-GRIEVTE 120 (143)
Q Consensus 86 --i~~Gd~v~I~na~~-~~~~---g----~~~L~ig~~-g~I~~~~ 120 (143)
++.|+.|.|.+-.. +.|. | .+++.+... ..|+.++
T Consensus 88 ~~l~KG~~V~VeGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~ 133 (169)
T 3lgj_A 88 QYLHKGSKVYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLD 133 (169)
T ss_dssp HHCCTTCEEEEEEEEEEECC--------CEEEEEECTTCCEEEEEC
T ss_pred HhCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEcc
Confidence 68999999998765 3332 3 455655543 3455543
No 76
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=45.54 E-value=23 Score=24.94 Aligned_cols=62 Identities=10% Similarity=0.019 Sum_probs=40.0
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe------e---------CcceEEEEEecCCCCC--
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG------D---------DTGAIYFTARNDQVDI-- 85 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg------D---------eTG~I~ltlW~~~~~~-- 85 (143)
..+.|.|.+.+..-.+.. .++ + +.++..-|| | +|--+++++|+.+++.
T Consensus 14 ~~N~V~LiGrL~~dPelr-~t~--------~------G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~ 78 (128)
T 4dam_A 14 NEIMICAVGNVATTPVFR-DLA--------N------GPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNAS 78 (128)
T ss_dssp CCCEEEEEEEECSCCEEE-EET--------T------EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHH
T ss_pred ceeEEEEEEEECCCCEEE-EcC--------C------CCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHH
Confidence 345577778777644433 222 1 246665554 2 4556899999865543
Q ss_pred --CCCCCEEEEeceEE
Q 032330 86 --MTPGTTVILRNAKI 99 (143)
Q Consensus 86 --i~~Gd~v~I~na~~ 99 (143)
++.|+.|.|.+-..
T Consensus 79 ~~l~KG~~V~VeGrL~ 94 (128)
T 4dam_A 79 GSLAVGDPVVVQGRLK 94 (128)
T ss_dssp HHCCTTCEEEEEEEEE
T ss_pred HhcCCCCEEEEEEEEE
Confidence 68999999998754
No 77
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=45.29 E-value=34 Score=23.36 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=54.7
Q ss_pred eeccCCCCCCCc--eEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeC-cceEEEEEecC--C-CCCCCCC
Q 032330 16 KVDQLKPGTTGH--TLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDD-TGAIYFTARND--Q-VDIMTPG 89 (143)
Q Consensus 16 kI~dL~p~~~~v--~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDe-TG~I~ltlW~~--~-~~~i~~G 89 (143)
-|++|.-+.+.+ .+.++|+-.... +..- . | .+.--..--|. .-.|.|+.|.. + -..++.|
T Consensus 17 lisqlqvgknrfsfkfegrvvyksst---fqnq--q---d------skyffitaqdannqeinmsfwqkvdqsyqtlkvg 82 (117)
T 3u4v_A 17 LISQLQVGKNRFSFKFEGRVVYKSST---FQNQ--Q---D------SKYFFITAQDANNQEINMSFWQKVDQSYQTLKVG 82 (117)
T ss_dssp CGGGCCTTCCTTSCEEEEEEEEECCC---EECT--T---S------CEEEEEEEECTTSCEEEEEEESSTHHHHTTCCTT
T ss_pred ehhhhhcccceeeEEeeeEEEEeecc---cccc--c---c------ccEEEEEeecCCCceechHHHHHhhhhhheEeec
Confidence 478888876655 567788765542 2220 1 2 23333333343 45899999973 2 2348999
Q ss_pred CEEEEeceEEceeCCeEEEEe
Q 032330 90 TTVILRNAKIDMFKGSMRLAV 110 (143)
Q Consensus 90 d~v~I~na~~~~~~g~~~L~i 110 (143)
.-+.+.++-++.|++.++|..
T Consensus 83 qyyyfiggevkqfknnlelkf 103 (117)
T 3u4v_A 83 QYYYFIGGEVKQFKNNLELKF 103 (117)
T ss_dssp CEEEEESCEEEEETTEEEEEE
T ss_pred eEEEEEccchhhhccceEEEE
Confidence 999999999999999999864
No 78
>3j20_X 30S ribosomal protein S28E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.91 E-value=50 Score=21.40 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=23.1
Q ss_pred CCeeEEEEE----eeCcceEEEEEecCCCCCCCCCCEEEEece
Q 032330 59 PPRIAECLV----GDDTGAIYFTARNDQVDIMTPGTTVILRNA 97 (143)
Q Consensus 59 ~~~v~~~lV----gDeTG~I~ltlW~~~~~~i~~Gd~v~I~na 97 (143)
.+.+.++-+ ||++|.+.+.--. ..+.+||++.|...
T Consensus 21 ~G~~tQVrve~l~g~d~~R~i~RNVK---GPVR~GDIl~L~Et 60 (71)
T 3j20_X 21 TGDVTQVKVRILEGRDKGRVIRRNVR---GPVRIGDILILRET 60 (71)
T ss_dssp SCCEEEEEEEECSSSSCSCEEEEEEE---SCCCTTCEEEESCS
T ss_pred CccEEEEEEEEeecCCCCCEEEeecc---CCcccCcEEEeehh
Confidence 455665433 4888876543322 23799999998754
No 79
>2wkd_A ORF34P2; SSB, single-stranded DNA binding, DNA binding protein; 2.10A {Lactococcus phage P2} PDB: 2wkc_A
Probab=42.23 E-value=48 Score=23.28 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=37.7
Q ss_pred ceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEeeCcc----eEEEEEecCCCCCCCCCCEEEEeceEEcee
Q 032330 27 HTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGDDTG----AIYFTARNDQVDIMTPGTTVILRNAKIDMF 102 (143)
Q Consensus 27 v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG----~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~ 102 (143)
++.+++|=++.-+.+++.+| ....+.--++-|++| .+.=++|= .+.++.||++.+.+-.-..-
T Consensus 4 It~t~qvNekNTrtV~TaKG-----------~KkviS~p~~~~e~g~~~k~~ygsaf~--pd~v~~GDivTvsgri~~ke 70 (119)
T 2wkd_A 4 ITVTAQANEKNTRTVSTAKG-----------DKKIISVPLFEKEKGSNVKVAYGSAFM--PDFIQMGDTVTVSGRVQAKE 70 (119)
T ss_dssp EEEEEECCTTTEEEECCTTS-----------CEEEEEEESSCCC----CCCCEEEEEC--CTTCCTTCEEEEEEEEEEC-
T ss_pred EEEEEEeccccceEEeeccC-----------ceeEEEEeeeecccCCceeeEEEEEec--cccccCCcEEEEeceeeeec
Confidence 35567777777666666653 234445567789999 33456674 23589999999965444333
Q ss_pred CC
Q 032330 103 KG 104 (143)
Q Consensus 103 ~g 104 (143)
+|
T Consensus 71 ~G 72 (119)
T 2wkd_A 71 SG 72 (119)
T ss_dssp --
T ss_pred cC
Confidence 44
No 80
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=40.00 E-value=60 Score=20.81 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=16.3
Q ss_pred CCCCCCCCCCEEEEeceEEceeCC
Q 032330 81 DQVDIMTPGTTVILRNAKIDMFKG 104 (143)
Q Consensus 81 ~~~~~i~~Gd~v~I~na~~~~~~g 104 (143)
+....+++||.|++.++ .|.|
T Consensus 13 ~LrK~F~~GDHVkVi~G---~~~g 33 (69)
T 2do3_A 13 ELRKYFKMGDHVKVIAG---RFEG 33 (69)
T ss_dssp CCCSSCCTTCEEEESSS---TTTT
T ss_pred HceeeccCCCeEEEecc---EEcC
Confidence 34567899999999998 4555
No 81
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=39.67 E-value=34 Score=26.61 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=41.3
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe------eCcc-------eEEEEEecCCC----CC
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG------DDTG-------AIYFTARNDQV----DI 85 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg------DeTG-------~I~ltlW~~~~----~~ 85 (143)
+++.|.|.+.+..-.+.. .++ .| ..++...|+ |+.| -+++++|+.++ ..
T Consensus 4 ~~N~v~L~G~l~~dpelr-~t~--------~G-----~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~ 69 (264)
T 2fxq_A 4 GLNQVFLIGTLTARPDMR-YTP--------GG-----LAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDL 69 (264)
T ss_dssp CEEEEEEEEEESSCCCCE-ECT--------TC-----CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTT
T ss_pred ceeEEEEEEEeccCCeEE-ECC--------CC-----CEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHh
Confidence 355678888877655443 222 34 356666554 2334 48999998654 34
Q ss_pred CCCCCEEEEeceEE-cee
Q 032330 86 MTPGTTVILRNAKI-DMF 102 (143)
Q Consensus 86 i~~Gd~v~I~na~~-~~~ 102 (143)
++.|+.|.|.+-.. +.|
T Consensus 70 l~KG~~V~V~G~L~~~~~ 87 (264)
T 2fxq_A 70 LEKGQLIFVEGRLEYRQW 87 (264)
T ss_dssp CCTTCEEEEEEEEEEC--
T ss_pred CCCCCEEEEEEEEEeeeE
Confidence 78999999998754 344
No 82
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=37.04 E-value=75 Score=22.91 Aligned_cols=64 Identities=8% Similarity=-0.028 Sum_probs=42.6
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEe--------------eCcceEEEEEecCC-CCC--
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVG--------------DDTGAIYFTARNDQ-VDI-- 85 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVg--------------DeTG~I~ltlW~~~-~~~-- 85 (143)
+++.|.|.+.+..-.+ . .+ .| ..|+..-|| ++|--+++++|+.+ ++.
T Consensus 5 ~~NkV~LiGrLg~DPe-r-~t---------~G-----~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~ 68 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-G-FV---------YE-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVK 68 (148)
T ss_dssp CCCCEEEEEEEEEEEE-E-ES---------SS-----SEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHH
T ss_pred cCcEEEEEEEeccCCE-e-ee---------CC-----cEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHH
Confidence 4677888888877554 3 22 12 346655443 34567999999986 543
Q ss_pred --CCCCCEEEEeceEE-cee
Q 032330 86 --MTPGTTVILRNAKI-DMF 102 (143)
Q Consensus 86 --i~~Gd~v~I~na~~-~~~ 102 (143)
++.|+.|.|.+-.. +.|
T Consensus 69 ~yl~KG~~V~VeGrL~~r~~ 88 (148)
T 3k7u_C 69 QKVKEGNVVCVNGRLRLSPQ 88 (148)
T ss_dssp HHCCTTCEEEEEEEEEECCC
T ss_pred hhCCCCCEEEEEEEEEeeee
Confidence 68999999998765 344
No 83
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=36.48 E-value=30 Score=26.37 Aligned_cols=84 Identities=10% Similarity=0.184 Sum_probs=50.8
Q ss_pred CCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEee--------------CcceEEEEEecC-CCC---
Q 032330 23 GTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGD--------------DTGAIYFTARND-QVD--- 84 (143)
Q Consensus 23 ~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgD--------------eTG~I~ltlW~~-~~~--- 84 (143)
.++.|.|++++..-.+.. .++ .| ..|+...||= +|=-+++++|++ .++
T Consensus 25 ~mNkV~LiGrLg~DPElR-~t~--------~G-----~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~ 90 (193)
T 3pgz_A 25 SLNKVILIGNLGADPEIR-RLN--------SG-----DQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVE 90 (193)
T ss_dssp CEEEEEEEEEESSCCEEE-ECT--------TS-----CEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHH
T ss_pred hcCEEEEEEEECCCCeEE-ECC--------CC-----CEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHH
Confidence 356678888887755443 222 33 3566665542 233489999985 443
Q ss_pred -CCCCCCEEEEeceEE-ceeC---C----eEEEEeCCce-eEEEcC
Q 032330 85 -IMTPGTTVILRNAKI-DMFK---G----SMRLAVDKWG-RIEVTE 120 (143)
Q Consensus 85 -~i~~Gd~v~I~na~~-~~~~---g----~~~L~ig~~g-~I~~~~ 120 (143)
.++.|+.|.|.+-.. +.|. | .+++.+.+.+ .|+.++
T Consensus 91 ~yL~KGs~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~ 136 (193)
T 3pgz_A 91 QYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLD 136 (193)
T ss_dssp HHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC
T ss_pred hhcCCCCEEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECc
Confidence 378999999997665 3442 2 4455555542 455443
No 84
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=36.34 E-value=40 Score=29.00 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=45.8
Q ss_pred CeeEEEEEeeCcceEEEEEecC--------CCCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEE
Q 032330 60 PRIAECLVGDDTGAIYFTARND--------QVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEV 118 (143)
Q Consensus 60 ~~v~~~lVgDeTG~I~ltlW~~--------~~~~i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~ 118 (143)
+.++=+.|-|.+|.|.+.+-.+ .+..+..||+|.|.+-..+.-.|.++|.+.+.--+.+
T Consensus 72 gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl~~ 138 (493)
T 3a74_A 72 GKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTK 138 (493)
T ss_dssp TTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEEC
T ss_pred CCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEEccc
Confidence 3477788999999999988532 1234789999999999888778899998887654443
No 85
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=34.38 E-value=21 Score=22.76 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=24.8
Q ss_pred CCeeEEEEEeeCcceEEEE--EecCCC----CCCCCCCEEEEec
Q 032330 59 PPRIAECLVGDDTGAIYFT--ARNDQV----DIMTPGTTVILRN 96 (143)
Q Consensus 59 ~~~v~~~lVgDeTG~I~lt--lW~~~~----~~i~~Gd~v~I~n 96 (143)
.+.+.+.+ .+.+|.|++- .|.... ..+.+|+.|+|..
T Consensus 28 ~~~v~~~i-~~~~G~V~~~G~~W~A~s~~~~~~i~~G~~V~Vv~ 70 (82)
T 3cp0_A 28 RAEVLEDV-GATSGQVRLDGSIWSARSMDPTHTFAEGEIVSVID 70 (82)
T ss_dssp EEEEEECB-CSSCCEEEETTEEEEEEESSTTCCBCTTCEEEEEE
T ss_pred EEEEEEEe-CCCCEEEEECCEEEEEEECCCCCccCCCCEEEEEE
Confidence 44454433 3457888884 787443 4589999999875
No 86
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=32.91 E-value=13 Score=24.05 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=19.1
Q ss_pred eCcceEEE-----E-EecCCC---CCCCCCCEEEEece
Q 032330 69 DDTGAIYF-----T-ARNDQV---DIMTPGTTVILRNA 97 (143)
Q Consensus 69 DeTG~I~l-----t-lW~~~~---~~i~~Gd~v~I~na 97 (143)
+.+|.|+| . .|.... ..+.+|+.|+|...
T Consensus 34 ~~~G~V~i~g~gg~~~W~A~s~~~~~i~~G~~V~Vv~v 71 (84)
T 2k14_A 34 DGFGEVVIEGIGGTISKSAVSFDNQQISYGTTVLVVDI 71 (84)
T ss_dssp TCEEEEEESCTTSCCCEEEEETTSCCBCSSCEEEEEEE
T ss_pred CCcEEEEEeeECccEEEEEEeCCCCccCCCCEEEEEEE
Confidence 44667776 3 576432 34899999998753
No 87
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=31.97 E-value=59 Score=28.50 Aligned_cols=60 Identities=8% Similarity=0.017 Sum_probs=44.5
Q ss_pred CeeEEEEEeeCcceEEEEEecC------CCCCCCCCCEEEEeceEEce---------eCCeEEEEeCCceeEEEc
Q 032330 60 PRIAECLVGDDTGAIYFTARND------QVDIMTPGTTVILRNAKIDM---------FKGSMRLAVDKWGRIEVT 119 (143)
Q Consensus 60 ~~v~~~lVgDeTG~I~ltlW~~------~~~~i~~Gd~v~I~na~~~~---------~~g~~~L~ig~~g~I~~~ 119 (143)
+.+.=..|-|.+|.|.+.+=.+ .+..+..|++|.|.+-.... -.|.++|.+.+.--+.+.
T Consensus 31 G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a 105 (585)
T 1c0a_A 31 GSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105 (585)
T ss_dssp SSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECC
T ss_pred CCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEEEEEeEEEEEecc
Confidence 3577788999999999987432 23458899999999977654 357899998877555544
No 88
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=29.44 E-value=43 Score=21.67 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=31.5
Q ss_pred CCCCCCEEEEeceEEceeCC-eEEEEeCCce----eEEEcCCCceEEcCCCCccccceeee
Q 032330 85 IMTPGTTVILRNAKIDMFKG-SMRLAVDKWG----RIEVTEPADFEVKESNNLSLVEYELV 140 (143)
Q Consensus 85 ~i~~Gd~v~I~na~~~~~~g-~~~L~ig~~g----~I~~~~~~~~~v~e~~n~S~~eye~v 140 (143)
+++.|+.|+|.+.-.-.|+. ..-.++++.| -+-+-+...+.=..++|++.-|-|.+
T Consensus 1 Mi~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~v 61 (70)
T 1qp2_A 1 MVQRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVEV 61 (70)
T ss_dssp CCCTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEEC
T ss_pred CcCCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeEe
Confidence 36889999999887655554 4445555554 33333333332223455666555544
No 89
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=27.28 E-value=61 Score=20.24 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=22.5
Q ss_pred CCCCCCCEEEEeceEEceeCCeEEEEeC
Q 032330 84 DIMTPGTTVILRNAKIDMFKGSMRLAVD 111 (143)
Q Consensus 84 ~~i~~Gd~v~I~na~~~~~~g~~~L~ig 111 (143)
+.++.||.|+++=..++..++++.|++-
T Consensus 44 ~~~~~Gd~V~v~V~~vd~~~~~i~lsl~ 71 (80)
T 2k52_A 44 ENLNVGDEIIVQAIDVRPEKREIDFKYI 71 (80)
T ss_dssp GGCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred eeeCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 4689999999887777777788888753
No 90
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=27.01 E-value=7.1 Score=28.64 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=20.8
Q ss_pred CcceEEEEEec--CCCCCCCCCCEEEEe
Q 032330 70 DTGAIYFTARN--DQVDIMTPGTTVILR 95 (143)
Q Consensus 70 eTG~I~ltlW~--~~~~~i~~Gd~v~I~ 95 (143)
.-|||||.-|| +..+.++.|+.|.|.
T Consensus 137 ShGCIrl~~~d~~~L~~~v~~Gt~V~I~ 164 (165)
T 4a1k_A 137 SKGCIRMHNKDVIELASIVPNGTRVTIN 164 (165)
T ss_dssp ESSSEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred cCCCcCCCHHHHHHHHhcCCCCCEEEEE
Confidence 45999999998 345667899999885
No 91
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=26.55 E-value=77 Score=23.49 Aligned_cols=67 Identities=7% Similarity=-0.047 Sum_probs=42.9
Q ss_pred eccCCCCCCCceEEEEEEecCcceeccCCCccccCCCCCCCCCCeeEEEEEee--------------CcceEEEEEecCC
Q 032330 17 VDQLKPGTTGHTLTVKVVSSKPVQVNKPRGARSLSSLSQPSRPPRIAECLVGD--------------DTGAIYFTARNDQ 82 (143)
Q Consensus 17 I~dL~p~~~~v~i~~kVl~~~~~~~~~~R~~~~~~~DG~~~~~~~v~~~lVgD--------------eTG~I~ltlW~~~ 82 (143)
+.....+++.|.|.+.+..-.+.. .++ ..|++.-||= +|--+++++|+.+
T Consensus 15 ~~r~a~smNkViLiGrLg~DPElR-~t~---------------~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~ 78 (164)
T 3k81_C 15 FMRCCKSVNSVTLVGVVHDIQSGF-VYE---------------DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGEL 78 (164)
T ss_dssp -----CCEEEEEEEEEEECCCCEE-SSS---------------CEECCEEEEECCC--------CCCCCEEEEEEECCHH
T ss_pred hhHHhcCCcEEEEEEEeccCCEEE-EcC---------------ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCH
Confidence 344456678888888888766543 111 2355554442 3556999999977
Q ss_pred -CCC----CCCCCEEEEeceEE
Q 032330 83 -VDI----MTPGTTVILRNAKI 99 (143)
Q Consensus 83 -~~~----i~~Gd~v~I~na~~ 99 (143)
++. ++.|+.|.|.+-..
T Consensus 79 lAE~~~~yL~KGs~V~VeGrL~ 100 (164)
T 3k81_C 79 FSAEVKQKVKEGNVVCVNGRLR 100 (164)
T ss_dssp HHHHHHHHCCTTCEEEECCEEE
T ss_pred HHHHHHhhcCCCCEEEEEEEEE
Confidence 543 68999999998754
No 92
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=25.15 E-value=2.4e+02 Score=21.76 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=57.8
Q ss_pred EEEEEEecCcce-eccCCCccccCCCCCCCCCCeeEEEEEeeCcceEEEEEecC-CCCCCCCCCEEEEeceEEceeCCeE
Q 032330 29 LTVKVVSSKPVQ-VNKPRGARSLSSLSQPSRPPRIAECLVGDDTGAIYFTARND-QVDIMTPGTTVILRNAKIDMFKGSM 106 (143)
Q Consensus 29 i~~kVl~~~~~~-~~~~R~~~~~~~DG~~~~~~~v~~~lVgDeTG~I~ltlW~~-~~~~i~~Gd~v~I~na~~~~~~g~~ 106 (143)
+++.||...++- +++++ .| ...|-.+.||-+|---++-..+- .-+.+.+..+|.|.|-+- ++|.+
T Consensus 18 ~~VmVLkat~pF~ye~~E-------~~----k~~MFHATVATetqfF~VKVfn~~LkeKF~~k~iI~ISdY~~--~~g~l 84 (206)
T 2oq0_A 18 VIVKVLSTTKPFEYETPE-------ME----KKIMFHATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDYLE--YDSLL 84 (206)
T ss_dssp EEEEEEEECCCEEEECCC-------------EEEEEEEEEECSSCEEEEEECCGGGGGGGSSSSEEEEESBEE--ETTEE
T ss_pred eEEEEEecccceEEechh-------cc----cceeEEEEEeecceeEEEEEeechhhhhcccCceEEEEeecc--cccee
Confidence 788898888643 33333 23 35699999999999999999994 445589999999999874 57766
Q ss_pred EEEeCCceeEEEcC
Q 032330 107 RLAVDKWGRIEVTE 120 (143)
Q Consensus 107 ~L~ig~~g~I~~~~ 120 (143)
++ .+.+.|..++
T Consensus 85 Ev--~~~ssVse~~ 96 (206)
T 2oq0_A 85 EV--NEESTVSEAG 96 (206)
T ss_dssp EE--CTTCEEEECC
T ss_pred ee--eccceEEecc
Confidence 55 5778887775
No 93
>3tur_A Mycobacteria tuberculosis LD-transpeptidase type; protein-peptidoglycan complex, peptidoglycan binding protein; HET: 0JC DGL 6CL; 1.72A {Mycobacterium tuberculosis} PDB: 3u1p_A 3u1q_A 3vae_A 3tx4_A 4huc_A
Probab=22.65 E-value=13 Score=29.95 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=22.2
Q ss_pred CcceEEEEEec--CCCCCCCCCCEEEEece
Q 032330 70 DTGAIYFTARN--DQVDIMTPGTTVILRNA 97 (143)
Q Consensus 70 eTG~I~ltlW~--~~~~~i~~Gd~v~I~na 97 (143)
.-|||||.-.+ ..-+.+..|+.|.|.|.
T Consensus 230 SHGCIrL~~~da~~Ly~~v~~GTpV~I~~s 259 (287)
T 3tur_A 230 SHGCLNVSPSNAQWFYDHVKRGDIVEVVNT 259 (287)
T ss_dssp BSSSEEECHHHHHHHHHHCCTTCEEEEESC
T ss_pred CccCcCCCHHHHHHHHHhCCCCCEEEEEeC
Confidence 57899998887 24456789999999875
No 94
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=22.33 E-value=2.2e+02 Score=20.36 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=33.9
Q ss_pred CeeEEEEEeeCcceEEEEEecCCCCCCCCCCEEEEeceEE
Q 032330 60 PRIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKI 99 (143)
Q Consensus 60 ~~v~~~lVgDeTG~I~ltlW~~~~~~i~~Gd~v~I~na~~ 99 (143)
+.-....|-|....|.++--+-..|.|++|.-|.+.+.+.
T Consensus 48 ~~~v~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~ 87 (136)
T 1sr3_A 48 SLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE 87 (136)
T ss_dssp SSEEEEEEECSSCEEEEEEESCCCTTCCTTSEEEEEEEEC
T ss_pred CCEEEEEEEeCCcEEEEEECCCCCccccCCCeEEEEEEEC
Confidence 3467788899999999888788899999999999988764
No 95
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=20.75 E-value=24 Score=25.34 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=27.6
Q ss_pred CCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEEc
Q 032330 83 VDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVT 119 (143)
Q Consensus 83 ~~~i~~Gd~v~I~na~~~~~~g~~~L~ig~~g~I~~~ 119 (143)
...++.||.|+++|....-+---+.+.=|+.|.|+.+
T Consensus 34 ~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~ 70 (126)
T 2zzd_A 34 KSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRL 70 (126)
T ss_dssp SCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEE
T ss_pred CCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEE
Confidence 3458999999999877655544566667888888775
No 96
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=20.57 E-value=67 Score=27.86 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=26.6
Q ss_pred eEEEEEecCCCCCCCCCCEEEEeceEEceeC
Q 032330 73 AIYFTARNDQVDIMTPGTTVILRNAKIDMFK 103 (143)
Q Consensus 73 ~I~ltlW~~~~~~i~~Gd~v~I~na~~~~~~ 103 (143)
++.+.|-++..+.+++||.|.|.|-+...+.
T Consensus 206 ~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~ 236 (595)
T 3f9v_A 206 QLEIILEDDLVDSARPGDRVKVTGILDIKQD 236 (595)
T ss_dssp EEEEEEEGGGTTCSCSSCEEEEEEECCCCCS
T ss_pred eEEEEEecccccccccCCEEEEEEEEEeccc
Confidence 4777888899999999999999999887664
Done!