BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032331
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VPX|A Chain A, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|B Chain B, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|C Chain C, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|D Chain D, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|E Chain E, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|F Chain F, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|G Chain G, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|H Chain H, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|I Chain I, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|J Chain J, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|K Chain K, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|L Chain L, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|M Chain M, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|N Chain N, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|O Chain O, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|P Chain P, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|Q Chain Q, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|R Chain R, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|S Chain S, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
pdb|1VPX|T Chain T, Crystal Structure Of Transaldolase (Ec 2.2.1.2) (Tm0295)
From Thermotoga Maritima At 2.40 A Resolution
Length = 230
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 95 ERFVKEWKKYLE 106
ERF+++WKKYLE
Sbjct: 215 ERFMEDWKKYLE 226
>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb
pdb|3DXY|A Chain A, Crystal Structure Of Ectrmb In Complex With Sam
pdb|3DXZ|A Chain A, Crystal Structure Of Ectrmb In Complex With Sah
Length = 218
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 96 RFVKEWKKYLEYEAEVMKDVPGWKVGENVYNSGRWMP-PAS 135
+W+ Y E+ EVM + G+K N+ S ++P PAS
Sbjct: 147 HMATDWEPYAEHMLEVMSSIDGYK---NLSESNDYVPRPAS 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,660,875
Number of Sequences: 62578
Number of extensions: 174241
Number of successful extensions: 297
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 6
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)